RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16067
(1386 letters)
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP:
d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 343 bits (882), Expect = e-109
Identities = 127/157 (80%), Positives = 148/157 (94%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 1286
+IPNK+++TLTI+D+GIGMTKADL+NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY
Sbjct: 108 LIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 167
Query: 1287 SAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIE 1346
SAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D EP+GRGTK++LH+KEDQ EY+E
Sbjct: 168 SAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLE 227
Query: 1347 EKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEE 1383
E++IKEIVKKHSQFIGYPI L VEKER+KE+S+DE E
Sbjct: 228 ERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 264
Score = 177 bits (451), Expect = 4e-50
Identities = 66/88 (75%), Positives = 79/88 (89%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVK 494
TV +KHNDDEQY WESSAGGSFT++ D EP+GRGTK++LH+KEDQ EY+EE++IKEIVK
Sbjct: 177 TVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVK 236
Query: 495 KHSQFIGYPIKLLVEKEREKELSEDEEE 522
KHSQFIGYPI L VEKER+KE+S+DE E
Sbjct: 237 KHSQFIGYPITLFVEKERDKEVSDDEAE 264
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 341 bits (878), Expect = e-109
Identities = 127/157 (80%), Positives = 148/157 (94%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 1286
+IPNK+++TLTI+D+GIGMTKADL+NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY
Sbjct: 72 LIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 131
Query: 1287 SAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIE 1346
SAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D EP+GRGTK++LH+KEDQ EY+E
Sbjct: 132 SAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLE 191
Query: 1347 EKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEE 1383
E++IKEIVKKHSQFIGYPI L VEKER+KE+S+DE E
Sbjct: 192 ERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 228
Score = 176 bits (449), Expect = 3e-50
Identities = 66/88 (75%), Positives = 79/88 (89%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVK 494
TV +KHNDDEQY WESSAGGSFT++ D EP+GRGTK++LH+KEDQ EY+EE++IKEIVK
Sbjct: 141 TVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVK 200
Query: 495 KHSQFIGYPIKLLVEKEREKELSEDEEE 522
KHSQFIGYPI L VEKER+KE+S+DE E
Sbjct: 201 KHSQFIGYPITLFVEKERDKEVSDDEAE 228
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 341 bits (877), Expect = e-108
Identities = 127/157 (80%), Positives = 148/157 (94%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 1286
+IPNK+++TLTI+D+GIGMTKADL+NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY
Sbjct: 100 LIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 159
Query: 1287 SAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIE 1346
SAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D EP+GRGTK++LH+KEDQ EY+E
Sbjct: 160 SAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLE 219
Query: 1347 EKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEE 1383
E++IKEIVKKHSQFIGYPI L VEKER+KE+S+DE E
Sbjct: 220 ERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 256
Score = 176 bits (449), Expect = 7e-50
Identities = 66/88 (75%), Positives = 79/88 (89%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVK 494
TV +KHNDDEQY WESSAGGSFT++ D EP+GRGTK++LH+KEDQ EY+EE++IKEIVK
Sbjct: 169 TVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVK 228
Query: 495 KHSQFIGYPIKLLVEKEREKELSEDEEE 522
KHSQFIGYPI L VEKER+KE+S+DE E
Sbjct: 229 KHSQFIGYPITLFVEKERDKEVSDDEAE 256
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor
complex; HET: 7PP; 2.20A {Homo sapiens}
Length = 239
Score = 335 bits (862), Expect = e-106
Identities = 119/156 (76%), Positives = 141/156 (90%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 1286
IIPN +E+TLT++D+GIGMTKADL+NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY
Sbjct: 79 IIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 138
Query: 1287 SAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIE 1346
SAYLVA+KV V +KHNDDEQY WESSAGGSFT++ D+ EP+GRGTK++LH+KEDQ EY+E
Sbjct: 139 SAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLE 198
Query: 1347 EKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEE 1382
E+++KE+VKKHSQFIGYPI L +EKEREK +
Sbjct: 199 ERRVKEVVKKHSQFIGYPITLYLEKEREKGEFNSKL 234
Score = 169 bits (430), Expect = 2e-47
Identities = 58/87 (66%), Positives = 73/87 (83%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVK 494
V +KHNDDEQY WESSAGGSFT++ D+ EP+GRGTK++LH+KEDQ EY+EE+++KE+VK
Sbjct: 148 VVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVK 207
Query: 495 KHSQFIGYPIKLLVEKEREKELSEDEE 521
KHSQFIGYPI L +EKEREK +
Sbjct: 208 KHSQFIGYPITLYLEKEREKGEFNSKL 234
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding,
phosphoprotein, stress respo nucleotide-binding; HET:
RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A*
2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A*
2ygf_A* 2akp_A
Length = 220
Score = 331 bits (851), Expect = e-105
Identities = 106/151 (70%), Positives = 127/151 (84%), Gaps = 1/151 (0%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 1286
I P E+K L I DSGIGMTKA+L+NNLGTIAKSGTKAFMEAL AGAD+SMIGQFGVGFY
Sbjct: 66 ITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFY 125
Query: 1287 SAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNS-EPLGRGTKIVLHMKEDQAEYI 1345
S +LVAD+V V SK NDDEQYIWES+AGGSFT+ D E +GRGT + L +K+DQ EY+
Sbjct: 126 SLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYL 185
Query: 1346 EEKKIKEIVKKHSQFIGYPIKLLVEKEREKE 1376
EEK+IKE++K+HS+F+ YPI+L+V KE EKE
Sbjct: 186 EEKRIKEVIKRHSEFVAYPIQLVVTKEVEKE 216
Score = 164 bits (419), Expect = 2e-46
Identities = 51/82 (62%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNS-EPLGRGTKIVLHMKEDQAEYIEEKKIKEIV 493
V SK NDDEQYIWES+AGGSFT+ D E +GRGT + L +K+DQ EY+EEK+IKE++
Sbjct: 135 QVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVI 194
Query: 494 KKHSQFIGYPIKLLVEKEREKE 515
K+HS+F+ YPI+L+V KE EKE
Sbjct: 195 KRHSEFVAYPIQLVVTKEVEKE 216
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 329 bits (846), Expect = e-103
Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 5/162 (3%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG-----ADISMIGQF 1281
I +KE+ L + D+G+GMT+ +LV NLGTIAKSGT F+ + + +IGQF
Sbjct: 68 IKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQF 127
Query: 1282 GVGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQ 1341
GVGFYSA+LVADKV VTSKHN+D Q+IWES + I LGRGT I L +KE+
Sbjct: 128 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEA 187
Query: 1342 AEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEE 1383
++Y+E IK +VKK+SQFI +PI + K E +EEE
Sbjct: 188 SDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEE 229
Score = 185 bits (472), Expect = 8e-53
Identities = 47/114 (41%), Positives = 66/114 (57%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVK 494
VTSKHN+D Q+IWES + I LGRGT I L +KE+ ++Y+E IK +VK
Sbjct: 142 IVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVK 201
Query: 495 KHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKK 548
K+SQFI +PI + K E +EEE KEE+++ D +E+E + K
Sbjct: 202 KYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKT 255
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA,
NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus
familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A*
1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A*
1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Length = 236
Score = 325 bits (836), Expect = e-103
Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 5/163 (3%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG-----ADISMIGQF 1281
I +KE+ L + D+G+GMT+ +LV NLGTIAKSGT F+ + + +IGQF
Sbjct: 72 IKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQF 131
Query: 1282 GVGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQ 1341
GVGFYSA+LVADKV VTSKHN+D Q+IWES + I LGRGT I L +KE+
Sbjct: 132 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEA 191
Query: 1342 AEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEV 1384
++Y+E IK +VKK+SQFI +PI + K + + E+
Sbjct: 192 SDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWEL 234
Score = 168 bits (427), Expect = 3e-47
Identities = 37/88 (42%), Positives = 51/88 (57%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVK 494
VTSKHN+D Q+IWES + I LGRGT I L +KE+ ++Y+E IK +VK
Sbjct: 146 IVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVK 205
Query: 495 KHSQFIGYPIKLLVEKEREKELSEDEEE 522
K+SQFI +PI + K + + E
Sbjct: 206 KYSQFINFPIYVWSSKTGGGGKTVWDWE 233
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding; HET:
IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 326 bits (839), Expect = e-102
Identities = 90/159 (56%), Positives = 117/159 (73%), Gaps = 2/159 (1%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL-QAGADISMIGQFGVGF 1285
I NKE+ L+I D+GIGMTK DL+NNLGTIAKSGT F+EA+ ++G D+S+IGQFGVGF
Sbjct: 86 ISANKEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGF 145
Query: 1286 YSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNS-EPLGRGTKIVLHMKEDQAEY 1344
YSA+LVADKV V +K+NDDEQYIWES+A FTI D L RGT+I LH+KED
Sbjct: 146 YSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIYKDPRGATLKRGTRISLHLKEDATNL 205
Query: 1345 IEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEE 1383
+ +KK+ +++ K+SQFI +PI LL E +E+ D +
Sbjct: 206 LNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAK 244
Score = 175 bits (446), Expect = 4e-49
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNS-EPLGRGTKIVLHMKEDQAEYIEEKKIKEIV 493
V +K+NDDEQYIWES+A FTI D L RGT+I LH+KED + +KK+ +++
Sbjct: 156 IVYTKNNDDEQYIWESTADAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLI 215
Query: 494 KKHSQFIGYPIKLLVEKEREKELS--EDEEEEKKEEEKEEDKTPKLEDEAQLDAIKK 548
K+SQFI +PI LL E +E+ ++ + + ++K
Sbjct: 216 SKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEK 272
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A
{Escherichia coli}
Length = 235
Score = 294 bits (755), Expect = 1e-91
Identities = 62/151 (41%), Positives = 105/151 (69%), Gaps = 7/151 (4%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQA--GADISMIGQFGVG 1284
+ +K+++TLTI D+G+GMT+ +++++LGTIAKSGTK+F+E+L + D +IGQFGVG
Sbjct: 87 VSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVG 146
Query: 1285 FYSAYLVADKVTVTSK---HNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQ 1341
FYSA++VADKVTV ++ + WES+ G +T+ E RGT+I LH++E +
Sbjct: 147 FYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKED--RGTEITLHLREGE 204
Query: 1342 AEYIEEKKIKEIVKKHSQFIGYPIKLLVEKE 1372
E++++ +++ I+ K+S I P+++ +E
Sbjct: 205 DEFLDDWRVRSIISKYSDHIALPVEIEKREE 235
Score = 137 bits (348), Expect = 1e-36
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 435 TVTSK---HNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKE 491
TV ++ + WES+ G +T+ E RGT+I LH++E + E++++ +++
Sbjct: 158 TVRTRAAGEKPENGVFWESAGEGEYTVADITKED--RGTEITLHLREGEDEFLDDWRVRS 215
Query: 492 IVKKHSQFIGYPIKLLVEKE 511
I+ K+S I P+++ +E
Sbjct: 216 IISKYSDHIALPVEIEKREE 235
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura
genomics consortium, SGC, stress response; HET: AN2;
2.01A {Plasmodium falciparum}
Length = 272
Score = 294 bits (755), Expect = 4e-91
Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 18/225 (8%)
Query: 1156 IFSCFQALDKIRPSNHPGPNSLMDQPCRGGAAPGPGDGDVVANVNNNNNNNNNNNITNVY 1215
I + A DK R + A + N N +
Sbjct: 56 ISNASDACDKKRII------LENN-KLIKDAEVVTNEEIKNETEKEKTENVNESTDKKEN 108
Query: 1216 FFLFPGFGQDP---IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG 1272
+ I P+KE+KTLTI D+GIGM K++L+NNLGTIA+SGT F++ ++ G
Sbjct: 109 VEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEG 168
Query: 1273 -ADISMIGQFGVGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKP------DNSE 1325
AD ++IGQFGVGFYS++LV+++V V +K +D+ Y W S GSF++ + +
Sbjct: 169 KADSNLIGQFGVGFYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDD 227
Query: 1326 PLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVE 1370
G GTKI+LH+KE+ EY+E+ K+KE++KK+S+FI +PI++ E
Sbjct: 228 IKGSGTKIILHLKEECDEYLEDYKLKELIKKYSEFIKFPIEIWSE 272
Score = 138 bits (348), Expect = 2e-36
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKP------DNSEPLGRGTKIVLHMKEDQAEYIEEKK 488
V +K +D+ Y W S GSF++ + + G GTKI+LH+KE+ EY+E+ K
Sbjct: 193 EVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYK 251
Query: 489 IKEIVKKHSQFIGYPIKLLVE 509
+KE++KK+S+FI +PI++ E
Sbjct: 252 LKELIKKYSEFIKFPIEIWSE 272
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 300 bits (770), Expect = 6e-88
Identities = 109/158 (68%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 1286
I P E+K L I DSGIGMTKA+L+NNLGTIAKSGTKAFMEAL AGAD+SMIGQFGVGFY
Sbjct: 66 ITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFY 125
Query: 1287 SAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNS-EPLGRGTKIVLHMKEDQAEYI 1345
S +LVAD+V V SK NDDEQYIWES+AGGSFT+ D E +GRGT + L +K+DQ EY+
Sbjct: 126 SLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYL 185
Query: 1346 EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEE 1383
EEK+IKE++K+HS+F+ YPI+L+V KE EKE+ EEE
Sbjct: 186 EEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEE 223
Score = 167 bits (424), Expect = 6e-43
Identities = 61/115 (53%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNS-EPLGRGTKIVLHMKEDQAEYIEEKKIKEIV 493
V SK NDDEQYIWES+AGGSFT+ D E +GRGT + L +K+DQ EY+EEK+IKE++
Sbjct: 135 QVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVI 194
Query: 494 KKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKK 548
K+HS+F+ YPI+L+V KE EKE+ EEE+K EE+K+E+K + + + +L+ + +
Sbjct: 195 KRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDE 249
Score = 54.4 bits (131), Expect = 2e-07
Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 1 IVETLRQKAD-ADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ 41
I++ L+++ D DK VKDL LL+ET+LL+SGF+L++P
Sbjct: 621 IIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPT 662
Score = 36.7 bits (85), Expect = 0.063
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 28/109 (25%)
Query: 473 VLHMKEDQAE--YI---EEKKIK-----EIVKKH----------------SQFIGYPIKL 506
V M E Q YI K ++ + +K +Q + K
Sbjct: 461 VTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKT 520
Query: 507 LVEKEREKELSEDEEEEKKEEEKEEDKTPKLED--EAQLDAIKKVFLSQ 553
LV+ ++ EL E +EE+ + E++ ++ P + E D ++KV +S
Sbjct: 521 LVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSY 569
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 293 bits (752), Expect = 1e-85
Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 5/163 (3%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG-----ADISMIGQF 1281
I +KE+ L + D+G+GMT+ +LV NLGTIAKSGT F+ + + +IGQF
Sbjct: 85 IKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQF 144
Query: 1282 GVGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQ 1341
GVGFYSA+LVADKV VTSKHN+D Q+IWES + I LGRGT I L +KE+
Sbjct: 145 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEA 204
Query: 1342 AEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEV 1384
++Y+E IK +VKK+SQFI +PI + K + + E+
Sbjct: 205 SDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWEL 247
Score = 156 bits (396), Expect = 2e-39
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 435 TVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVK 494
VTSKHN+D Q+IWES + I LGRGT I L +KE+ ++Y+E IK +VK
Sbjct: 159 IVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVK 218
Query: 495 KHSQFIGYPIKLLVEKEREKELSEDEEEE----------KKEEEKEED 532
K+SQFI +PI + K + + E +E ++++
Sbjct: 219 KYSQFINFPIYVWSSKTGGGGKTVWDWELMNDIKPIWQRPSKEVEDDE 266
Score = 58.8 bits (143), Expect = 9e-09
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 1 IVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ 41
+++ + ++ D++DK V DL +LFET+ L SG+ L D +
Sbjct: 605 LIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTK 645
Score = 33.0 bits (76), Expect = 0.81
Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 48/152 (31%)
Query: 476 MKEDQAE--YI---EEKKIK-----EIVKKH-------------------SQFIGYPIKL 506
MKE Q + ++ K+ + E + K +F G +
Sbjct: 443 MKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQN 502
Query: 507 LVEKEREKELSEDEEEEKKEEEKEEDKTP---KLEDEAQLDAIKKVFLSQII-----CIG 558
V KE + E E+ ++ E E++ P ++D+A D I+K +SQ + +
Sbjct: 503 -VAKE-GVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALV 560
Query: 559 SD---------RIVKMQLQSFYMPSERQFNVT 581
+ RI+K Q + +
Sbjct: 561 ASQYGWSGNMERIMKAQAYQTGKDISTNYYAS 592
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP;
2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 271 bits (695), Expect = 5e-79
Identities = 64/163 (39%), Positives = 111/163 (68%), Gaps = 7/163 (4%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQA--GADISMIGQFGVG 1284
+ +K+++TLTI D+G+GMT+ +++++LGTIAKSGTK+F+E+L + D +IGQFGVG
Sbjct: 67 VSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVG 126
Query: 1285 FYSAYLVADKVTVTSK---HNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQ 1341
FYSA++VADKVTV ++ + WES+ G +T+ E RGT+I LH++E +
Sbjct: 127 FYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKED--RGTEITLHLREGE 184
Query: 1342 AEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEV 1384
E++++ +++ I+ K+S I P+++ +E++ E E++
Sbjct: 185 DEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKI 227
Score = 123 bits (310), Expect = 5e-29
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 435 TVTSK---HNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKE 491
TV ++ + WES+ G +T+ E RGT+I LH++E + E++++ +++
Sbjct: 138 TVRTRAAGEKPENGVFWESAGEGEYTVADITKED--RGTEITLHLREGEDEFLDDWRVRS 195
Query: 492 IVKKHSQFIGYPIKLLVEKEREKELSEDEEE---------EKKEEEKEED 532
I+ K+S I P+++ +E++ E E+ K E +E+
Sbjct: 196 IISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSEITDEE 245
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia
coli} PDB: 2iop_A
Length = 624
Score = 272 bits (699), Expect = 6e-79
Identities = 64/163 (39%), Positives = 111/163 (68%), Gaps = 7/163 (4%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQA--GADISMIGQFGVG 1284
+ +K+++TLTI D+G+GMT+ +++++LGTIAKSGTK+F+E+L + D +IGQFGVG
Sbjct: 67 VSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVG 126
Query: 1285 FYSAYLVADKVTVTSK---HNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQ 1341
FYSA++VADKVTV ++ + WES+ G +T+ E RGT+I LH++E +
Sbjct: 127 FYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKED--RGTEITLHLREGE 184
Query: 1342 AEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEV 1384
E++++ +++ I+ K+S I P+++ +E++ E E++
Sbjct: 185 DEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKI 227
Score = 124 bits (314), Expect = 2e-29
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 435 TVTSK---HNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKE 491
TV ++ + WES+ G +T+ E RGT+I LH++E + E++++ +++
Sbjct: 138 TVRTRAAGEKPENGVFWESAGEGEYTVADITKED--RGTEITLHLREGEDEFLDDWRVRS 195
Query: 492 IVKKHSQFIGYPIKLLVEKEREKELSEDEEE---------EKKEEEKEED 532
I+ K+S I P+++ +E++ E E+ K E +E+
Sbjct: 196 IISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSEITDEE 245
Score = 45.3 bits (108), Expect = 1e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 7 QKADADKNDKAVKDLVNLLFETSLLSSGFTLEDP 40
++A +++ + V LL + +LL+ TLEDP
Sbjct: 578 KRAADTEDEAKFSEWVELLLDQALLAERGTLEDP 611
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A*
3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P*
2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A*
1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 165 bits (420), Expect = 3e-43
Identities = 54/348 (15%), Positives = 104/348 (29%), Gaps = 81/348 (23%)
Query: 822 LIGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHI 881
+G L + T+WLR HN V + L ++P+W DE ++Q AR ++IG I
Sbjct: 255 AVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWG--DEQLFQTARLILIGETIKI 312
Query: 882 VYNEWLPILIGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGESYTKDVGLS 941
V E++ L G +DPE+
Sbjct: 313 VIEEYVQQLSGYFLQLK-------------FDPELLF----------------------- 336
Query: 942 PTSSGYFQGYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERRVTNQELPFSSTMQHP 1001
G + +F H L+P + RV Q+ + + +
Sbjct: 337 --------GAQFQYRNRIAMEFN--QLYHWHPLMPDSF------RVGPQDYSYEQFLFNT 380
Query: 1002 GDILEVMDVFDSTLRGLTNQLQQYQDRFITEQTIDFLFRVGSLSLEKVIVDLVGLTLGF- 1060
+++ ++ + + Q + V +++ L
Sbjct: 381 SMLVD--YGVEALVDAFSRQPAGRIGG--GRNIDHHILHVAVDVIKE------SRVLRLQ 430
Query: 1061 FYLWYCGGFLLQ--------------VTRLSQVYRGVNDIDYYIGGLLESVIRGTLSSPS 1106
+ Y F ++ L ++Y ++ +++Y G LLE ++ S
Sbjct: 431 PFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGES 490
Query: 1107 FRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLTSLASL 1154
+ A + G+ F L +L L
Sbjct: 491 MIEMGAPFSLKGLLGNPICSPEY--WKASTFGGEVGFNLVKTATLKKL 536
Score = 152 bits (384), Expect = 1e-38
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 8/173 (4%)
Query: 682 FFFTDVETCTFQIVQSTHFIDVSFMYGSHPDKARELRSLSRGKLRVREVNGRTFMPTGDP 741
FF T + H +D+ +YG + ++ +LR GKL+ + +NG + P+ +
Sbjct: 178 FFKTSGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEE 237
Query: 742 SNCV-----NASSNICYDAGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDE 796
+ + G L + T+WLR HN V + L ++P+W DE
Sbjct: 238 APVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWG--DE 295
Query: 797 LVYQEARRLVIGCFQHIVYNEWLPILIGDIRVNQQLDLAVSQTVWLRFHNYVA 849
++Q AR ++IG IV E++ L G + + D + ++ N +A
Sbjct: 296 QLFQTARLILIGETIKIVIEEYVQQLSGY-FLQLKFDPELLFGAQFQYRNRIA 347
Score = 124 bits (313), Expect = 1e-29
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 4/129 (3%)
Query: 279 EFGDDLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMDSEQVTRLSQVYRGVN 338
+A I+ R L+P+ +YR+ G+ SF +L + E L ++Y ++
Sbjct: 411 HHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELT--GEKEMAAELEELYGDID 468
Query: 339 DIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLT 398
+++Y G LLE ++ S + A + G+ F
Sbjct: 469 ALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEY--WKASTFGGEVGFN 526
Query: 399 LTSLTSLAS 407
L +L
Sbjct: 527 LVKTATLKK 535
Score = 45.0 bits (106), Expect = 1e-04
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 15/94 (15%)
Query: 171 PQCNRRTKYRTLDGTCNNLRRPWWGAVDTAHVRLMRPYYEDGVSSYRVSQVDASPLPNAR 230
P N Y + + N ++ R++ D + LP+A
Sbjct: 97 PTYNIAHDYISWESFSNV---SYYT-------RILPSVPRDCPTPMGTKGK--KQLPDAE 144
Query: 231 VLSRVFLPDRNISDVHTR---MYLEFSQLVAHDI 261
LSR FL R M+ F+Q H
Sbjct: 145 FLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTHQF 178
Score = 31.5 bits (71), Expect = 2.0
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 540 EAQLDAIKKVFLSQIICIGSDRIVKMQLQSFYMP 573
E + +K L +++C+ + + F++P
Sbjct: 522 EVGFNLVKTATLKKLVCLNTKTCPYVS---FHVP 552
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl
isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM
NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A*
2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A*
3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A*
3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 165 bits (417), Expect = 1e-42
Identities = 112/612 (18%), Positives = 202/612 (33%), Gaps = 114/612 (18%)
Query: 592 CVSLGPKCCSDSGDRVRSTSGNCRPILIPSNDDFYSQFNRRCLEYKRSLAINCSVGALQP 651
C + P D R+ +G+C N+ R L G P
Sbjct: 6 CGAPVPLVKCDENSPYRTITGDC-------NNRRSPALGAANRALARWLPAEYEDGLALP 58
Query: 652 DKICPGRESNPRPSAYKADVLATKLIRLKNFFFTDVETCTFQIVQSTHFI--DVSFMYGS 709
+ N A ++ K++ + + + +Q + D+ F +
Sbjct: 59 FGWTQRKTRNGFRV-PLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPET 117
Query: 710 HPDKARELRSLSRGKLRVREVNGRTFMPTGDP---------------SNCVNASSNICYD 754
++ + P DP C
Sbjct: 118 ELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAR 177
Query: 755 AGDIRVNQQLDLAV------SQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIG 808
V LD ++ S LR + + +W + + ++
Sbjct: 178 EQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPS-P 236
Query: 809 CFQHIVYNEWLPILIGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQ 868
C L GD R ++Q+ LA + T+ LR HN +A +L + NP W+ E +YQ
Sbjct: 237 CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWN--GEKLYQ 294
Query: 869 EARRLVIGCFQHIVYNEWLPILIGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGA 928
EAR+++ Q I + ++LPI++G K + +QGY+ V+P F
Sbjct: 295 EARKILGAFIQIITFRDYLPIVLGSEMQKWI-------PPYQGYNNSVDPRISNVFTF-- 345
Query: 929 FRGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERR-- 986
AFR H +P T+ ++E
Sbjct: 346 --------------------------------------AFRFGHMEVPSTVSRLDENYQP 367
Query: 987 -VTNQELPFSSTMQHPGDILEVMDVFDSTLRGLTNQLQQYQ--DRFITEQTIDFLFR--- 1040
ELP + + I++ D +RGL + + D+ +T + + LF+
Sbjct: 368 WGPEAELPLHTLFFNTWRIIKDGG-IDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTH 426
Query: 1041 ------VGSLSLEK----------VIVDLVGLTL--GFFYLWYCGGFLLQVTRLSQVYRG 1082
+ +++L++ GL+ L + +L +Y+
Sbjct: 427 KIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKT 486
Query: 1083 VNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQ 1142
++ID +IGG E ++ P C+ F + + GDR+++E NPG FT KQ
Sbjct: 487 PDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE-----NPGVFTE-KQ 540
Query: 1143 LTLTSLTSLASL 1154
S + L
Sbjct: 541 RDSLQKVSFSRL 552
Score = 113 bits (284), Expect = 6e-26
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 8/185 (4%)
Query: 225 PLPNARVLSRVFLPDRNISDVHTRMYLEFSQLVAHDITLNPQESTAVPTRGLRGEFGDDL 284
PL + + D I + + + S+L+ D + E + G DL
Sbjct: 375 PLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTS-ELRNKLFQPTHKIHGFDL 433
Query: 285 AARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMDSEQVT-RLSQVYRGVNDIDYY 343
AA ++QR RD+G+ Y +R CGLS ++ L + ++ + +L +Y+ ++ID +
Sbjct: 434 AAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIW 493
Query: 344 IGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLT 403
IGG E ++ P C+ F + + GDR+++E NPG FT KQ
Sbjct: 494 IGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE-----NPGVFTE-KQRDSLQKV 547
Query: 404 SLASW 408
S +
Sbjct: 548 SFSRL 552
Score = 94.7 bits (234), Expect = 7e-20
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 170 APQCNRRTKYRTLDGTCNNLRRPWWGAVDTAHVRLMRPYYEDGVSS----YRVSQVDASP 225
+C+ + YRT+ G CNN R P GA + A R + YEDG++ + +
Sbjct: 12 LVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFR 71
Query: 226 LPNARVLSRVFLPDRNISDVH----TRMYLEFSQLVAHDITLNPQES 268
+P AR +S + + V + +++++ Q+V HD+ P+
Sbjct: 72 VPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETE 118
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 158 bits (401), Expect = 2e-41
Identities = 75/390 (19%), Positives = 134/390 (34%), Gaps = 74/390 (18%)
Query: 784 LIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGDIRVNQQLDLAVSQTVWLR 843
L+ N + + + C L GD R ++ +L T+ LR
Sbjct: 84 LLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLR 143
Query: 844 FHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGESYTKDVGLSP 903
HN +A +L NP W E +YQEAR++V Q I Y ++LP+++G + +
Sbjct: 144 EHNRLATELKSLNPRWD--GERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYL--- 198
Query: 904 TSSGYFQGYDPEVNPSTLADFAAGAFRGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADF 963
++ Y+ V+P F
Sbjct: 199 ---PTYRSYNDSVDPRIANVFTN------------------------------------- 218
Query: 964 AAGAFRGLHSLIPGTIKLVNERR---VTNQELPFSSTMQHPGDILEVMDVFDSTLRGLTN 1020
AFR H+LI + ++ R N +P S ++ D LRGL
Sbjct: 219 ---AFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVL-EGGIDPILRGLMA 274
Query: 1021 QLQQ--YQDRFITEQTIDFLFRVGSLSLEKVIVDLV------GLTLGFFYLWYCGGFLLQ 1072
+ Q++ ++ + LF + + GL + +CG +
Sbjct: 275 TPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPE 334
Query: 1073 --------------VTRLSQVYRGVNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRY 1118
+L + Y N+ID ++GG+ E + R P C+ F +
Sbjct: 335 TVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKL 394
Query: 1119 KYGDRYFYEGPPATNPGAFTPGKQLTLTSL 1148
+ GDR+++E + Q++L +
Sbjct: 395 RDGDRFWWENEGVFSMQQRQALAQISLPRI 424
Score = 143 bits (362), Expect = 2e-36
Identities = 71/326 (21%), Positives = 112/326 (34%), Gaps = 71/326 (21%)
Query: 599 CCSDSGDRVRSTSGNCRPILIPSNDDFYSQFNRRCLEYKRSLAINCSVGALQPDKICPGR 658
C + C P+ IP ND C+ + RS CPG
Sbjct: 3 CETS-----CVQQPPCFPLKIPPNDPRIK-NQADCIPFFRS------------CPACPGS 44
Query: 659 ESNPRPSAYKADVLATKLIRLKNFFFTDVETCTFQIVQSTHFIDVSFMYGSHPDKARELR 718
R QI T F+D S +YGS AR LR
Sbjct: 45 NITIRN----------------------------QINALTSFVDASMVYGSEEPLARNLR 76
Query: 719 SLSRGKLRVR-----EVNGRTFMPTGD--PSNCV---NASSNICYDAGDIRVNQQLDLAV 768
++S + + NGR +P + C+ ++ C+ AGD R ++ +L
Sbjct: 77 NMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTS 136
Query: 769 SQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGDIRV 828
T+ LR HN +A +L NP W E +YQEAR++V Q I Y ++LP+++G +
Sbjct: 137 MHTLLLREHNRLATELKSLNPRWD--GERLYQEARKIVGAMVQIITYRDYLPLVLGPTAM 194
Query: 829 NQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLP 888
+ L + +Y +P +N ++ L+ +
Sbjct: 195 RKYL---------PTYRSYND----SVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPM 241
Query: 889 ILIGESYTKDVGLSPTSSGYFQGYDP 914
V + G DP
Sbjct: 242 EPNPRVPLSRVFFASWRVVLEGGIDP 267
Score = 113 bits (284), Expect = 2e-26
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%)
Query: 254 SQLVAHDITLNPQESTAVPTRGLRGEFGDDLAARDIQRGRDYGLRPYVDYRELCGLSTVR 313
++L + + + G DL A ++QR RD+GL Y +R CGL
Sbjct: 277 AKLNRQNQIAVDEIRERLF--EQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPE 334
Query: 314 SFGDLNDFM-DSEQVTRLSQVYRGVNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRY 372
+ G L + + + +L + Y N+ID ++GG+ E + R P C+ F +
Sbjct: 335 TVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKL 394
Query: 373 KYGDRYFYEGPPATNPGAFTPGKQLTLTSL 402
+ GDR+++E + Q++L +
Sbjct: 395 RDGDRFWWENEGVFSMQQRQALAQISLPRI 424
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A*
3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A*
3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A*
3hs7_A* 3krk_A* ...
Length = 587
Score = 158 bits (401), Expect = 1e-40
Identities = 55/363 (15%), Positives = 106/363 (29%), Gaps = 81/363 (22%)
Query: 807 IGCFQHIVYNEWLPILIGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELV 866
+ E L +G L + T+WLR HN V + L Q++P W DE +
Sbjct: 240 VEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWG--DEQL 297
Query: 867 YQEARRLVIGCFQHIVYNEWLPILIGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAA 926
+Q +R ++IG IV +++ L G + +DPE+
Sbjct: 298 FQTSRLILIGETIKIVIEDYVQHLSGYHFKLK-------------FDPEL---------- 334
Query: 927 GAFRGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERR 986
++ + H L+P T + ++
Sbjct: 335 -----------------------LFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQ-- 369
Query: 987 VTNQELPFSSTMQHPGDILEVMDVFDSTLRGLTNQLQQYQDRFITEQTIDFLFRVGSLSL 1046
E F + + +LE + T Q+ + V S+
Sbjct: 370 ----EYSFKQFLYNNSILLE--HGLTQFVESFTRQIAGRVAGG--RNVPIAVQAVAKASI 421
Query: 1047 EKVIVDLVGLTLGFF-YLWYCGGFLLQ--------------VTRLSQVYRGVNDIDYYIG 1091
++ + + Y F L+ L +Y ++ ++ Y
Sbjct: 422 DQ------SREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPA 475
Query: 1092 GLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLTSL 1151
L+E + + + A + G+ P F + + S+
Sbjct: 476 LLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQ--YWKPSTFGGEVGFKIINTASI 533
Query: 1152 ASL 1154
SL
Sbjct: 534 QSL 536
Score = 151 bits (381), Expect = 5e-38
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 8/174 (4%)
Query: 681 NFFFTDVETCTFQIVQSTHFIDVSFMYGSHPDKARELRSLSRGKLRVREVNGRTFMPTGD 740
FF TD + H +D++ +YG D+ +LR GKL+ + + G + PT
Sbjct: 177 QFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVK 236
Query: 741 PSNCV-----NASSNICYDAGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRD 795
+ + N+ + G L + T+WLR HN V + L Q++P W D
Sbjct: 237 DTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWG--D 294
Query: 796 ELVYQEARRLVIGCFQHIVYNEWLPILIGDIRVNQQLDLAVSQTVWLRFHNYVA 849
E ++Q +R ++IG IV +++ L G + D + ++ N +A
Sbjct: 295 EQLFQTSRLILIGETIKIVIEDYVQHLSGY-HFKLKFDPELLFNQQFQYQNRIA 347
Score = 124 bits (312), Expect = 2e-29
Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
Query: 280 FGDDLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMDSEQVTRLSQVYRGVND 339
+A I + R+ + +YR+ L SF +L + E L +Y ++
Sbjct: 412 AVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDV 469
Query: 340 IDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTL 399
++ Y L+E + + + A + G+ P F +
Sbjct: 470 MELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQ--YWKPSTFGGEVGFKI 527
Query: 400 TSLTSLAS 407
+ S+ S
Sbjct: 528 INTASIQS 535
Score = 54.7 bits (131), Expect = 2e-07
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 15/95 (15%)
Query: 171 PQCNRRTKYRTLDGTCNNLRRPWWGAVDTAHVRLMRPYYEDGVSSYRVSQVDASPLPNAR 230
P N Y++ + N ++ R + P D + + LP+++
Sbjct: 97 PTYNVHYGYKSWEAFSNL---SYYT-------RALPPVA-DDCPTPMGVK-GNKELPDSK 144
Query: 231 VLSRVFLPDRNISDVHTR---MYLEFSQLVAHDIT 262
+ L R M+ F+Q H
Sbjct: 145 EVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQFF 179
Score = 35.9 bits (82), Expect = 0.100
Identities = 6/64 (9%), Positives = 12/64 (18%), Gaps = 3/64 (4%)
Query: 540 EAQLDAIKKVFLSQIICIGSDRIVKMQLQSFYMPSERQFNVTLSDNLHLDLLCVSLGPKC 599
E I + +IC + + S + + P
Sbjct: 522 EVGFKIINTASIQSLICNNVKGCPFTSFNVQDPQPTKTATINASASH---SRLDDINPTV 578
Query: 600 CSDS 603
Sbjct: 579 LIKR 582
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A*
4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Length = 104
Score = 99.3 bits (247), Expect = 8e-25
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 173 CNRRTKYRTLDGTCNNLRRPWWGAVDTAHVRLMRPYYEDGVSSYRVS----QVDASPLPN 228
C + KYRT+ G CNN R P GA + A VR + YEDG S + + P+
Sbjct: 1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVAL 60
Query: 229 ARVLSRVFL---PDRNISD-VHTRMYLEFSQLVAHDITLNPQ 266
AR +S + D+ D + M++++ QL+ HD+ P+
Sbjct: 61 ARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPE 102
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 65.4 bits (160), Expect = 5e-11
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 9/64 (14%)
Query: 1 IVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ---------VELTLSGRPD 51
I++ LR++ AD+NDKAVKDLV LLF+TSLL+SGF LEDP ++L LS +
Sbjct: 368 IIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEE 427
Query: 52 RSPE 55
Sbjct: 428 EEEA 431
Score = 33.4 bits (77), Expect = 0.52
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 508 VEKEREKELSEDEEEEKKEEEKEEDKTPKLED--EAQLDAIKKVFLSQ 553
+ KE E EEE+++ EE++ + E D ++KV +S+
Sbjct: 270 LTKE-GVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSE 316
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 6e-10
Identities = 105/743 (14%), Positives = 208/743 (27%), Gaps = 273/743 (36%)
Query: 246 HTRMYLEFSQLVAH--DITLNPQESTAVPTRGLRGEFGDDLAARDIQRGRDYGLRPYVDY 303
H M E + DI +++ F D+ +D+Q D + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDA-----------FVDNFDCKDVQ---DM-PKSILSK 48
Query: 304 RELCGLSTVRSFGD--LNDFMDSEQVTRL---------SQVYRGVNDI---DYYIGGLLE 349
E+ D + RL V + V ++ +Y L
Sbjct: 49 EEI----------DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFLM 95
Query: 350 SVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPG--------KQLT--L 399
S I+ PS Y DR + + F +L L
Sbjct: 96 SPIKTEQRQPSMM----TRMYIE-QRDRLYNDNQV------FAKYNVSRLQPYLKLRQAL 144
Query: 400 TSL----------------TSLASWRLQKVYHAPKEKHRFS----WLTTVRGGPMTVTSK 439
L T +A V + K + + WL + +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVAL----DVCLSYKVQCKMDFKIFWLN--------LKNC 192
Query: 440 HNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQF 499
++ + + E + I P+ + + I L + + +++ ++K
Sbjct: 193 NSPET--VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS------IQAELRRLLKSKP-- 242
Query: 500 IGYPIKLLV-----EKE---------------REKELSEDEEEEKKEEEKEEDKTPKL-E 538
Y LLV + R K++++ + + L
Sbjct: 243 --YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 539 DEAQLDAIKKVFLSQIICIGSDRIVKMQLQSFYMPSERQFNVTLSDNLHLDLLCVSLGPK 598
DE K + L + + + Q +P E V ++ L ++
Sbjct: 301 DEV-----KSLLL---------KYLDCRPQD--LPRE----VLTTNPRRLSII------- 333
Query: 599 CCSDSGDRVRSTSGNCRPILIPSNDDFYSQFNRRCLEYKRSLAINCSVGALQPDKICPGR 658
+ +R G D + N K + I S+ L+P + R
Sbjct: 334 -----AESIRD--GLATW-------DNWKHVNC----DKLTTIIESSLNVLEPAEY---R 372
Query: 659 ESNPRPSAYKA------DV-LATKLIRLKNFFFTDVETCTFQIVQ--------------S 697
+ + + T L L +F +++ +V S
Sbjct: 373 K------MFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 698 THFI-DVSFMYGSHPDKAREL-RSLSRGKLRVREVNGRTFMPTGDPSNCVNASSN----- 750
T I + + L RS+ V N + D
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSI------VDHYNIPKTFDSDDLI--PPYLDQYFYSH 476
Query: 751 ICYDAGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELV--------YQEA 802
I + +I +++ L + V+L F ++ +K+ + +W+ ++ Y+
Sbjct: 477 IGHHLKNIEHPERMTLF--RMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYK-- 531
Query: 803 RRLVIGCFQHIVYNEWLPI---LIGDIRVNQQLDLAVSQTVWLRF-----HNYVAEK--- 851
+I N+ P L+ I L F N + K
Sbjct: 532 --------PYICDND--PKYERLVNAI---------------LDFLPKIEENLICSKYTD 566
Query: 852 LIQQNPSWSNRDELVYQEARRLV 874
L++ + DE +++EA + V
Sbjct: 567 LLRI--ALMAEDEAIFEEAHKQV 587
Score = 54.9 bits (131), Expect = 2e-07
Identities = 77/551 (13%), Positives = 162/551 (29%), Gaps = 169/551 (30%)
Query: 659 ESNPRPSAYKADVLATKLIRL-KNFFFTDVETCTFQIVQSTHFIDVSFMYGSHPDKAREL 717
E+ YK D+L+ NF DV+ I+ ++ + S + L
Sbjct: 10 ETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKE---EIDHIIMSKDAVSGTL 65
Query: 718 RSLSRGKLRVREVNG-RTFMPTGDPSNCVNASSNICYD--AGDIRVNQQLDLAVSQTVWL 774
R L ++ + F+ N Y I+ +Q ++ +++
Sbjct: 66 RLF--WTLLSKQEEMVQKFVEEVLRIN---------YKFLMSPIK-TEQRQPSMMTRMYI 113
Query: 775 RFHNYVAEKLIQQNPSWS----NRDELVY---------QEARRLVI----GCFQHIVYNE 817
+ +L N ++ +R + + A+ ++I G +
Sbjct: 114 EQRD----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----- 164
Query: 818 WLPI-LIGDIRVNQQLDLAVSQTVWLRFHNYVAEKLI---QQN------PSWSNRD---- 863
W+ + + +V ++D + WL N + + + Q P+W++R
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 864 ------ELVYQEARRLVIGCFQHIVYNEWLPILIGESYTKDVGLSPTSSGYFQGYDPEV- 916
+ E RRL + Y L +L +V + +
Sbjct: 222 NIKLRIHSIQAELRRL----LKSKPYENCLLVL------LNV------------QNAKAW 259
Query: 917 ---NPS-----TLADFAAGAFRGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAF 968
N S T F + T + L S E +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDE----VKSLLL---- 308
Query: 969 RGLHSLIPGTIKLVNERRVTNQELPFSSTMQHPGDILEVMDVFDSTLRGLTNQLQQYQ-- 1026
K ++ R Q+LP +P + + ++R ++
Sbjct: 309 -----------KYLDCR---PQDLPREVLTTNP---R-RLSIIAESIRDGLATWDNWKHV 350
Query: 1027 --DRF--ITEQTIDFL--------FRVGSLSL--EKVIVDLVGLTLGFFYLWY------C 1066
D+ I E +++ L F LS+ + + L+L +W+
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFD--RLSVFPPSAHIPTILLSL----IWFDVIKSDV 404
Query: 1067 GGFLLQVTRLSQVYRGVNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYK------- 1119
+ ++ + S V + + I + + + + + Y
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDD 463
Query: 1120 ----YGDRYFY 1126
Y D+YFY
Sbjct: 464 LIPPYLDQYFY 474
Score = 54.1 bits (129), Expect = 4e-07
Identities = 103/659 (15%), Positives = 206/659 (31%), Gaps = 200/659 (30%)
Query: 458 IKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELS 517
+ D GT + + E + +K ++E+++ + +F+ PIK ++R+ +
Sbjct: 56 MSKDAVS----GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMM 108
Query: 518 EDEEEEKKE------EEKEEDKTPKLEDEAQL-DAIKKVFLSQIICI----GS------- 559
E+++ + + +L+ +L A+ ++ ++ + I GS
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 560 ------DRIVKMQLQSFYMPSERQFNVTLSDNLHLDLLCVSLGPKCCSDSGDRVRSTSGN 613
KM + F++ + + N + L L + P S S D +
Sbjct: 169 DVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSN---- 222
Query: 614 CRPILIPSNDDFYSQFNRRCLE---YKRSLAINCSVGALQPDKICPGRESNPRPSAYKA- 669
I RR L+ Y+ L + L + A+ A
Sbjct: 223 -----IKLRIHSIQAELRRLLKSKPYENCLLV------L--LNVQ-------NAKAWNAF 262
Query: 670 DVLATKLIRLKNFFFTDVETCTFQIVQSTHFIDVSFMYGSHPDKARELRS----LSRGKL 725
++ L+ + TD +TH PD+ + L L
Sbjct: 263 NLSCKILLTTRFKQVTDF----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 726 RVREVNGRTFMPTGDPSNCVNASSNICYDAGDIRVNQQLDLAVSQTVWLRFHNYVAEKL- 784
RE + T +P S I A IR W + + +KL
Sbjct: 319 P-RE------VLTTNPRRL----SII---AESIRDGLAT--------WDNWKHVNCDKLT 356
Query: 785 --IQQNPSWSNRDELVYQEA-RRLVIGCFQHIVYNEWLP-----ILIGDIRVNQQLDLAV 836
I+ S + + Y++ RL + F + +P ++ D+ + + +
Sbjct: 357 TIIES--SLNVLEPAEYRKMFDRLSV--FP---PSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 837 SQTVWLRFHNYVAEKLIQQNPSWSNRDEL--VYQEARRLVIGCFQ-H--IV--YNEWLPI 889
H Y L+++ P + + +Y E + + + H IV YN
Sbjct: 410 K------LHKY---SLVEKQPK-ESTISIPSIYLELKVKLENEYALHRSIVDHYN----- 454
Query: 890 LIGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGESYTKDVGLSPTSSGYFQ 949
I +++ D + P YF + + E T F
Sbjct: 455 -IPKTFDSDDLIPPYLDQYFYSH--------IGHHLKNIEHPERMT-----------LF- 493
Query: 950 GYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERRVTNQELPFSSTMQHPGDILEVMD 1009
DF R L E+++ + +++ G IL +
Sbjct: 494 -------RMVFLDF-----RFL------------EQKIRHDSTAWNA----SGSILNTL- 524
Query: 1010 VFDSTLRGLTNQLQQYQDRFITEQT----------IDFLFRVGSLSLEKVIVDLVGLTL 1058
QL+ Y+ +I + +DFL ++ + DL+ + L
Sbjct: 525 ----------QQLKFYKP-YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 62.0 bits (151), Expect = 8e-10
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 9/64 (14%)
Query: 1 IVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ---------VELTLSGRPD 51
I+ETLRQKA+ADKNDK+VKDLV LL+ET+LLSSGF+LEDPQ ++L L D
Sbjct: 352 IIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDED 411
Query: 52 RSPE 55
Sbjct: 412 DPTA 415
Score = 34.6 bits (80), Expect = 0.23
Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 56/156 (35%)
Query: 473 VLHMKEDQAE--YI---EEKKIK-----EIVKKHSQFIGYPIKLLVE----------KER 512
MKE+Q YI + ++ E ++KH G + ++E KE
Sbjct: 191 CTRMKENQKHIYYITGETKDQVANSAFVERLRKH----GLEVIYMIEPIDEYCVQQLKEF 246
Query: 513 EK-----------ELSEDEEEEKKEEEKEEDKTPKLED--EAQLDAIKKVFLSQII---- 555
E EL EDEEE+KK+EEK+ + + ++KV +S +
Sbjct: 247 EGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSP 306
Query: 556 -CIGSD---------RIVKMQLQ-----SFYMPSER 576
CI + RI+K Q YM +++
Sbjct: 307 CCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKK 342
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 6e-09
Identities = 90/587 (15%), Positives = 152/587 (25%), Gaps = 222/587 (37%)
Query: 714 ARELRS--LSRGKLRVREVNGRTFM-PTGDPSNCV------NASSNICYD--AGDIRVNQ 762
A R LS G L + PT N + A D
Sbjct: 3 AYSTRPLTLSHGSLEH------VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 763 QLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPIL 822
+L +F YV+ + D+++ L + F++ L
Sbjct: 57 PAEL------VGKFLGYVSSLVEPSKVG--QFDQVL-----NLCLTEFEN-------CYL 96
Query: 823 IG-DI-----RVNQQLDLAVSQT-VWLRFHNYVAEKLIQQNPSWSNRDELVYQEARR--- 872
G DI ++ Q+ D + +T ++ NY+ +++ + P + +++
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIK--NYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 873 ---LVIG-------CF---QHI--VYNEWLPILIGESYTKDVGLSPTSSG----YFQGYD 913
+ G F + + Y+ + LI S L T+ + QG +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 914 -------PEVNPST-----------------LADFAA-----GAFRGESYTKDVGLSPTS 944
P P LA + G GE + G + S
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 945 SG---------------------------YFQGY-------DPEVNPSTLADFAAG---- 966
G +F G + + PS L D
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 967 -----AFRGLHSLIPGTIKLVNER-RVTNQELPFSSTMQ--------------HPGDILE 1006
+ L T + V + TN LP ++ P
Sbjct: 335 PSPMLSISNL------TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP----- 383
Query: 1007 VMDVFDSTLRGLTNQLQQYQDRFITEQT-IDFLFRVGSLSLEKVIVDLVGLTLG--FF-- 1061
+L GL L++ + +Q+ I F S K+ L + F
Sbjct: 384 ------QSLYGLNLTLRKAKAPSGLDQSRIPF-------SERKLKFSNRFLPVASPFHSH 430
Query: 1062 YL----------WYCGGFLLQVTRLS-QVYRGVN--DIDYYIGGLLESVIRGTLSSPSFR 1108
L + VY + D+ G + E ++ + P
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP--- 487
Query: 1109 CVFAEAFYRYKYGDRYFYEGPPATNPGA-----FTPGKQLTLTSLTS 1150
V E T A F PG L LT
Sbjct: 488 -VKWET----------------TTQFKATHILDFGPGGASGLGVLTH 517
Score = 57.8 bits (139), Expect = 3e-08
Identities = 83/534 (15%), Positives = 148/534 (27%), Gaps = 176/534 (32%)
Query: 205 MRPYY-EDGVSSYRVS-QVDASPLPNARVLSRVF---LP---------DRNISDVHTRMY 250
RP G S V + A L F LP D + +
Sbjct: 6 TRPLTLSHG--SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE--LV 61
Query: 251 LEFSQLVAHDITLNPQESTAVPTRGLRGEFGDD-LAARDI--------------QRGRDY 295
+F V+ + + EF + L DI
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 296 GLRPYVDYRELCG-----------LSTVRS--------F---GDLNDFMDSE-QVTRLSQ 332
++ Y+ R + V F G+ +D+ + E + L Q
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-ELR--DLYQ 178
Query: 333 VYRG-VNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPA----TN 387
Y V D+ + L +IR TL + ++ F +G N
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDA-----------------EKVFTQGLNILEWLEN 221
Query: 388 PGAFTPGKQLTLTS--------LTSLASW-RLQKVYH-APKE-KHRFSWLTTVRGG--PM 434
P TP K L+ + LA + K+ P E + T G
Sbjct: 222 PSN-TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 435 TVTSKHNDDEQ-------------YI-WES-SAGGSFTIKP---DNSEPLGRGTK----I 472
++ + E +I A + ++ P ++S G
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 473 VLHMKEDQAE-YI--------EEKKIKEI--VKKHSQFI--GYPIKL--LVEKEREKELS 517
+ ++ ++Q + Y+ K++ EI V + G P L L R+
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGAKNLVVSGPPQSLYGLNLTLRK---- 395
Query: 518 EDEEEEKKEEEKEEDKTPKLEDEAQLDAIKKVFLSQIICIGSDRIVKMQLQ--------- 568
K ++ + P F S+R +K +
Sbjct: 396 -----AKAPSGLDQSRIP--------------F--------SERKLKFSNRFLPVASPFH 428
Query: 569 SFYM-PSERQFNVTLSDNLHLDLLCVSLG-PKCCSDSGDRVRSTSGNCRPILIP 620
S + P+ N L N ++ + P + G +R SG+ ++
Sbjct: 429 SHLLVPASDLINKDLVKN-NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Score = 51.2 bits (122), Expect = 2e-06
Identities = 97/623 (15%), Positives = 166/623 (26%), Gaps = 243/623 (39%)
Query: 510 KER-EKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKKVFLSQII------CIGS-DR 561
+E+ K L E E ++E P A+L FL + +G D+
Sbjct: 34 QEQFNKILPEPTEGFAADDE------P--TTPAELVG---KFLGYVSSLVEPSKVGQFDQ 82
Query: 562 IVKMQLQSFYMPSERQFNVTLSDN-LHLDLLCVSL---GPKCCSDSGDRVRS-----TSG 612
++ + L F E + L N +H L L + + +++
Sbjct: 83 VLNLCLTEF----ENCY---LEGNDIHA--LAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 613 NCRPILIPSND-----------DFYSQF-----NRRCLE--------YKRSLA--INCSV 646
RP SN + F E Y + I S
Sbjct: 134 K-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 647 GALQP--------DKICP-G-------RESNPRPSAYKADVLAT-----KLIRLKNFFFT 685
L +K+ G + P D L + LI
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK---DYLLSIPISCPLI-------- 241
Query: 686 DVETCTFQIVQSTHFIDVSFMYGSHPDKARELRSLSRGKLRVREVNGRTFMPTGDPSNCV 745
++Q H++ + + G P ELRS +G TG V
Sbjct: 242 -------GVIQLAHYVVTAKLLGFTPG---ELRSYLKGA-------------TGHSQGLV 278
Query: 746 NASSNICYDAGDIRVNQQLDLAVSQTVWLRFHNYVAEKL-----I----QQNPSWSNRDE 796
A + +A + + W F V + + I + ++
Sbjct: 279 TAVA----------------IAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 797 LVYQEARR----------LVIGC-----FQHIVY-NEWLP----ILIGDIRVNQQLDLAV 836
+ +++ + ++ N LP + I VN +L V
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKNLVV 379
Query: 837 S------QTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPIL 890
S + L A PS ++ + + E R+L N +LP+
Sbjct: 380 SGPPQSLYGLNLTLRKAKA-------PSGLDQSRIPFSE-RKLKF-------SNRFLPV- 423
Query: 891 IGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGESYTKDVGLSP---TSSGY 947
SP S + D + KD+ + P T G
Sbjct: 424 ----------ASPFHSHLLV----PASDLINKDLVKNNVSFNA--KDIQI-PVYDTFDGS 466
Query: 948 -FQGYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERRVTNQELPFSSTMQH-----P 1001
+ ++ + D I V T F +T H P
Sbjct: 467 DLRVLSGSISER-IVD-----------CI--IRLPVKWETTTQ----FKAT--HILDFGP 506
Query: 1002 GDILEVMDVFDSTLRGLTNQLQQ 1024
G S L LT++ +
Sbjct: 507 GGA--------SGLGVLTHRNKD 521
Score = 50.0 bits (119), Expect = 6e-06
Identities = 51/338 (15%), Positives = 96/338 (28%), Gaps = 110/338 (32%)
Query: 212 GVSSYRVSQVDASPLPNARVLSRVFLPDRNISDVHTRMYLEFSQLVAHDITL-NPQESTA 270
G+ Y+ S+ A+ V+ +R +D H + FS L DI + NP T
Sbjct: 1632 GMDLYKTSKA-------AQ---DVW--NR--ADNHFKDTYGFSIL---DIVINNPVNLT- 1673
Query: 271 VPTRGLRG-EFGDDLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMDSEQVTR 329
+ G +G ++ +A + D L+ ++E+ ST +F + + Q T
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT- 1732
Query: 330 LSQ---------VYR-----GVNDIDYYIGGLLESV--------IRGTLSSPSFRCVFAE 367
Q + G+ D G S+ + +S
Sbjct: 1733 --QPALTLMEKAAFEDLKSKGLIPADATFAGH--SLGEYAALASLADVMS-------IES 1781
Query: 368 A----FYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLTSLASWRLQKVYHAPKEKHRF 423
FYR G P G G
Sbjct: 1782 LVEVVFYR---G-MTMQVAVPRDELGRSNYG----------------------------- 1808
Query: 424 SWLTTVRGGPMTVTSKHNDDEQYIWESSAGGSFTIKP--DNSEPLGR-----GTKIVLHM 476
+ + G + + + + + ++ N E + G L
Sbjct: 1809 --MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--NQQYVAAGDLRALDT 1864
Query: 477 KEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREK 514
+ +I+ +KI I++ L +E+
Sbjct: 1865 VTNVLNFIKLQKID-IIE-------LQKSLSLEEVEGH 1894
Score = 43.9 bits (103), Expect = 5e-04
Identities = 55/298 (18%), Positives = 92/298 (30%), Gaps = 119/298 (39%)
Query: 832 LDL----AVSQTVWLRFHNYVAEKL-------IQQNPSWSNRDEL-VY---QEARRLVIG 876
+DL +Q VW R N+ + + NP L ++ ++ +R+
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-----NLTIHFGGEKGKRIREN 1687
Query: 877 CFQHIVYNEWLPILIGESYTKDV--GLSPTSSGY-FQGYDPEVN------PSTLADFAAG 927
+ +++ I+ G+ T+ + ++ S+ Y F+ ++ P A
Sbjct: 1688 -YSAMIFET---IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP---ALTLME 1740
Query: 928 --AFRGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGLHSLIPG-------- 977
AF K GL P + F AG HSL G
Sbjct: 1741 KAAFE---DLKSKGLIPADA-TF----------------AG-----HSL--GEYAALASL 1773
Query: 978 --------TIKLVNER-RVTNQELPFSST------MQ--HPGDI-----LEVMDVFDSTL 1015
+++V R +P M +PG + E + +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 1016 RGLTNQL----------QQY------QD--------RFITEQTIDFLFRVGSLSLEKV 1049
T L QQY + FI Q ID + SLSLE+V
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 40.8 bits (95), Expect = 0.004
Identities = 40/191 (20%), Positives = 61/191 (31%), Gaps = 52/191 (27%)
Query: 134 SGRPDQASGLCKPRINKFKAQPEADQNIADQCFASQAPQCNRRTKY--RTLDGTCNNLRR 191
SG P GL + K KA DQ S+ P R+ K+ R L
Sbjct: 380 SGPPQSLYGLNL-TLRKAKAPSGLDQ--------SRIPFSERKLKFSNRFLPVAS----- 425
Query: 192 PWWGAVDTAHVRLMRPYYEDGVSSYRVSQV--DASPL--P--------NARVLSRVFLPD 239
P+ H L+ P + + V +A + P + RVLS
Sbjct: 426 PF-------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE- 477
Query: 240 RNISDVHTRMYLEFSQLVA----HDITLNPQESTAVPT--------RGLRGEFGDDLAAR 287
I D R+ +++ H + P ++ + G+R L
Sbjct: 478 -RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL--- 533
Query: 288 DIQRGRDYGLR 298
DI DYG +
Sbjct: 534 DINPDDDYGFK 544
Score = 40.0 bits (93), Expect = 0.008
Identities = 60/420 (14%), Positives = 112/420 (26%), Gaps = 195/420 (46%)
Query: 999 QHPG---DILE----VMDVFDSTLRGLTNQLQQYQDRFITEQTIDFLFRVGSLSLEKVIV 1051
Q G D+ + DV++ R D + + F I+
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWN---RA---------DNHFKDT---YGFS---------IL 1662
Query: 1052 DLV-----GLTLGFFYLWYCGGFLLQVTRLSQVYRGVNDIDYYIGGLLESVIRGTLSSPS 1106
D+V LT+ F GG + R + Y + E+++ G
Sbjct: 1663 DIVINNPVNLTIHF------GGEKGKRIR-----------ENYSAMIFETIVDG---KLK 1702
Query: 1107 FRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLTSLASLCI-FSCFQALDK 1165
+F E Y + L+ T T A + + F+ L
Sbjct: 1703 TEKIFKEINEHST---SYTFRSEKGL----------LSATQFTQPALTLMEKAAFEDLKS 1749
Query: 1166 --IRPSN-----HPGPNSLMDQPCRGG-----AAPGPGDGDVVANVNNNNNNNNNNNITN 1213
+ P++ H SL G A+ +A+V
Sbjct: 1750 KGLIPADATFAGH----SL-------GEYAALAS--------LADV-------------- 1776
Query: 1214 VYFFLFPGFGQDPIIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG- 1272
++I ++V G A+
Sbjct: 1777 ----------------------MSIESL------VEVVFYRG-------MTMQVAVPRDE 1801
Query: 1273 ---ADISMI----GQFGVGFYSAYL--VADKVTVTSK-------HN-DDEQYIWESSAGG 1315
++ MI G+ F L V ++V + +N +++QY+ +AG
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV---AAG- 1857
Query: 1316 SFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREK 1375
L + +I+ +KI I++ L +E+
Sbjct: 1858 ---------------DLRALDTVTNVLNFIKLQKID-IIE-------LQKSLSLEEVEGH 1894
Score = 35.0 bits (80), Expect = 0.26
Identities = 35/283 (12%), Positives = 74/283 (26%), Gaps = 118/283 (41%)
Query: 357 SSPSFRCVF--AEAFYRYKYG---------------------------DRY---FYEGPP 384
+S + + V+ A+ ++ YG + Y +E
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 385 ATNPGA---------------FT-PGKQLTLTS-------LTSLASWR-LQKVYHAPKEK 420
F L+ T L A++ L+ P +
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 421 ----H---------------RFS---WLTTVRGGPMTVTSKHNDDEQYIWESSAGGSFTI 458
H + RG MT+ DE S G I
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRG--MTMQVAVPRDEL---GRSNYGMIAI 1812
Query: 459 KPDNSEPLGRGTKIVLHMKEDQAEYIEEK------KIKEIV---KKHSQFI--GYPIKLL 507
P ++ ++ +Y+ E+ + EIV ++ Q++ G
Sbjct: 1813 NPG---------RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG------ 1857
Query: 508 VEKEREKELSE--DEEEEKKEEEKEEDKTPKLEDEAQLDAIKK 548
+ ++ + + +K +L+ L+ ++
Sbjct: 1858 -DLRALDTVTNVLNFIKLQKI------DIIELQKSLSLEEVEG 1893
Score = 34.6 bits (79), Expect = 0.33
Identities = 42/256 (16%), Positives = 69/256 (26%), Gaps = 92/256 (35%)
Query: 986 RVTNQELPFSSTMQHPGDILEVMDVFDSTLRGLTNQLQQYQDRFITEQTIDFLFRV---G 1042
FS IL++ V ++ + LT + + I E +F G
Sbjct: 1651 NHFKDTYGFS--------ILDI--VINNPVN-LTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 1043 SLSLEKVIVDLVGLTLGFFYLWYCGGFLLQVTRLSQ---------VYR-----GVNDIDY 1088
L EK+ ++ + Y + LL T+ +Q + G+ D
Sbjct: 1700 KLKTEKIFKEINEHSTS--YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 1089 YIGGLLESV--------IRGTLSSPSFRCVFAEA----FYRYKYGDRYFYEGPPATNPG- 1135
G S+ + +S FYR G P G
Sbjct: 1758 TFAGH--SLGEYAALASLADVMS-------IESLVEVVFYR---G-MTMQVAVPRDELGR 1804
Query: 1136 ------AFTPGKQLTLTSLTSLASLCIFSCFQALDKIRPSNHPGPNSLMDQPCRGGAAPG 1189
A PG+ S +L + +++ G
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVV--------ERV----------------------G 1834
Query: 1190 PGDGDVVANVNNNNNN 1205
G +V VN N N
Sbjct: 1835 KRTGWLVEIVNYNVEN 1850
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 58.4 bits (142), Expect = 7e-09
Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 1 IVETLRQKAD-ADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ 41
I++ L+++ D DK VKDL LL+ET+LL+SGF+L++P
Sbjct: 349 IIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPT 390
Score = 36.1 bits (84), Expect = 0.083
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 28/106 (26%)
Query: 476 MKEDQAE--YI---EEKKIK-----EIVKKH----------------SQFIGYPIKLLVE 509
M E Q YI K ++ + +K +Q + K LV+
Sbjct: 192 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 251
Query: 510 KEREKELSEDEEEEKKEEEKEEDKTPKLED--EAQLDAIKKVFLSQ 553
++ EL E +EE+ + E++ ++ P + E D ++KV +S
Sbjct: 252 ITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSY 297
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 53.8 bits (130), Expect = 1e-08
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 7 QKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ 41
++A +++ + V LL + +LL+ TLEDP
Sbjct: 80 KRAADTEDEAKFSEWVELLLDQALLAERGTLEDPN 114
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 49.0 bits (116), Expect = 2e-06
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 503 PIKLLVEKEREKELSE-DEEEEKKEEEKEEDKTPKLED-----EAQLDAIK-------KV 549
I+ E E+ K L E D + E+E E LE+ Q++ K K
Sbjct: 86 SIRKWRE-EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Query: 550 FLSQ 553
F Q
Sbjct: 145 FYQQ 148
Score = 33.6 bits (76), Expect = 0.28
Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 1338 KEDQAEYIEEK------KIKEIVKKHSQFI-GYPIKLLVEKEREKELSEDEEE 1383
+E+Q + ++E +E +K + + + + + E+ K + ++
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 30.9 bits (69), Expect = 2.1
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 11/44 (25%)
Query: 512 REKELSEDEE------EEKKEE-----EKEEDKTPKLEDEAQLD 544
+ L+++ E EE+++ + + ++A+ D
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD 119
Score = 30.5 bits (68), Expect = 2.6
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 17/75 (22%)
Query: 48 GRPDRS---PERLIAAVPIRQTCQHEDNRVYERQANPER-EPEVRGYGTRYRQSSYSSSY 103
+ DR PE IR+ + + R+ E A + E E R + +
Sbjct: 75 AQADRLTQEPE------SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR-- 126
Query: 104 GYN----RNSRESRE 114
+ +N +R
Sbjct: 127 -QSEQVEKNKINNRI 140
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 35.3 bits (81), Expect = 0.040
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 463 SEPLGRGTKIVLHMKEDQAEYI--------EEKKIKEIVKKHSQFIGYPIKLLVEKEREK 514
S PL + + M + E+ E + KE+ +K + L ++ + E+
Sbjct: 2 SSPLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQ 61
Query: 515 ELSEDEEEEKKE--------EEKEEDKTPKLEDE----AQLDAIKK 548
+ D EE + E K ++ +LEDE A+L A K+
Sbjct: 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKR 107
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 33.3 bits (75), Expect = 0.19
Identities = 7/34 (20%), Positives = 23/34 (67%)
Query: 509 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQ 542
+++ +++ +D++E+++EEE+ D+ L + +
Sbjct: 52 DEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFK 85
Score = 31.8 bits (71), Expect = 0.63
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 509 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKKV 549
E++ E+ EDE+E++ E++ ++D + E+E D ++ +
Sbjct: 40 EEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDL 80
Score = 29.9 bits (66), Expect = 3.6
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 476 MKEDQAEYIEEKKIKEI---VKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEED 532
M E EY E+ KI + + E E ++E + DE+E++ E+E ++D
Sbjct: 2 MLELVGEYWEQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDD 61
Query: 533 KTPKLEDE 540
+ E+E
Sbjct: 62 DDDEDEEE 69
Score = 29.1 bits (64), Expect = 6.5
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 509 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKK 548
E+E E +++E+E +++ +ED+ + E QL+ +++
Sbjct: 43 EEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLRE 82
Score = 28.7 bits (63), Expect = 8.2
Identities = 9/35 (25%), Positives = 24/35 (68%)
Query: 509 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQL 543
+E+E+E +++E+E ++E+ ++D E+E ++
Sbjct: 39 GEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEV 73
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 34.2 bits (77), Expect = 0.31
Identities = 12/73 (16%), Positives = 33/73 (45%)
Query: 471 KIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 530
+I + + ++ K + E+ +K+ Q + + E ++ + + + +E+E
Sbjct: 488 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE 547
Query: 531 EDKTPKLEDEAQL 543
KL+++ QL
Sbjct: 548 RTLALKLQEQEQL 560
Score = 31.1 bits (69), Expect = 3.3
Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 475 HMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKT 534
M++ + Y ++ +K++ +K ++LL E+ER L E+E+ +E ++ ++
Sbjct: 516 MMEQKERSY--QEHLKQLTEKMENDR---VQLLKEQERTLALKLQEQEQLLKEGFQK-ES 569
Query: 535 PKLEDEAQ 542
+++E Q
Sbjct: 570 RIMKNEIQ 577
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 33.3 bits (75), Expect = 0.67
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 444 EQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYP 503
E Y A ++ +N + M+E++ E++ + K E+ + +
Sbjct: 288 ENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVK 347
Query: 504 IKLLVEKEREKELSEDEEEEKKEEEKE----EDKTPKLEDEAQLDAIKKVFLSQ 553
K+ K+ E EL E+ KK E + E+K + EDE ++ L Q
Sbjct: 348 EKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQ 401
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 31.9 bits (71), Expect = 0.80
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 502 YPIK--LLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQ 542
YP++ L ++K+R + +E+++ E E++K + E E
Sbjct: 5 YPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERD 47
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 31.4 bits (70), Expect = 0.98
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 464 EPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK-EREKELSEDEEE 522
E L + K + K Y + K+ +K+ +K L E +E EL EE
Sbjct: 8 EQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE 67
Query: 523 EKKEEEKE-EDKTPKLEDEAQ 542
E + KE ED T L DEA
Sbjct: 68 EADKLNKEVEDLTASLFDEAN 88
>2kk4_A Uncharacterized protein AF_2094; protein of unknown function,
structural genomics, PSI-2, protein structure
initiative; NMR {Archaeoglobus fulgidus}
Length = 95
Score = 30.1 bits (67), Expect = 1.1
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 471 KIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREK-ELSEDEEEEKKEEEK 529
V +E E I+ IVK ++F+ P K + E + + E +EEE +E +
Sbjct: 9 MYVFKGEESFGESIDVYGDYLIVKVGTEFLAVPKKSIKSVEDGRIVIGEFDEEEARELGR 68
Query: 530 ----EEDKTPKLED 539
E+ K LE+
Sbjct: 69 KWLEEKSKPVTLEE 82
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 32.1 bits (72), Expect = 1.3
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 779 YVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGDIRVNQQLDLAVSQ 838
Y E++I NPS + + A R G + L IL+ + +V + V+
Sbjct: 190 YEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLTNTKVPRSTKALVAG 249
Query: 839 TVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLV 874
V R + P ++ D + E R++
Sbjct: 250 -VRSRLIKFPE----IMAPLLTSIDAIS-LECERVL 279
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 31.5 bits (72), Expect = 1.7
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 501 GYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDE 540
I++L +KE E+ + + EEEE K E ++++K K +D+
Sbjct: 222 KTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 31.5 bits (70), Expect = 1.9
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 449 ESSAGG-SF--TIKPDNSEPLGRGTKIVLHMKEDQAEYIEEK--KIKEIVKKHSQFIGYP 503
+ G S+ +KP + + + + ++ E I++K +E K +
Sbjct: 9 NKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKH 68
Query: 504 IKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLED-----EAQLDAIKK 548
+ E ERE EE + +E K+E EA A+ +
Sbjct: 69 LAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLE 118
Score = 31.1 bits (69), Expect = 2.3
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 475 HMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKT 534
H E+ K E V++ + + + KE+ + E +E +K +E E K
Sbjct: 112 HFAAMLERLQEKDKHAEEVRQRAI-EENNNWIKMAKEKLAQKMESNKENRKYQEAELLKH 170
Query: 535 PKLEDEAQLDAIKKV 549
+ E + + I++
Sbjct: 171 LAEKREHEREVIQRA 185
Score = 29.9 bits (66), Expect = 5.6
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 476 MKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKEL--SEDEEEEKKEEEKEEDK 533
+ E + +K + Q L ++E E+E+ EE + +E
Sbjct: 141 WIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKL 200
Query: 534 TPKLEDEAQ 542
K+E +
Sbjct: 201 AQKMESNKE 209
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.7 bits (72), Expect = 1.9
Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 470 TKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK--EREKELSEDEEEEKKEE 527
+ ++ + Y E ++++ + Q + + + + E E+ + + E+KK +
Sbjct: 895 NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954
Query: 528 EKEEDKTPKLEDEAQL 543
++ D +LE+E
Sbjct: 955 QQMLDLEEQLEEEEAA 970
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix,
transferase; HET: GOL; 1.65A {Escherichia coli} SCOP:
a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Length = 618
Score = 31.6 bits (71), Expect = 2.0
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 283 DLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMD 323
D+ + + +DY L PY++YR++ + + +F+
Sbjct: 23 DVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVR 63
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 31.4 bits (72), Expect = 2.0
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 26/89 (29%)
Query: 476 MKEDQAE--YI---EEKKIK-----EIVKKH----------------SQFIGYPIKLLVE 509
M E Q YI K ++ + +K +Q + K LV+
Sbjct: 192 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 251
Query: 510 KEREKELSEDEEEEKKEEEKEEDKTPKLE 538
++ EL E +EE+ + E++ ++ P +
Sbjct: 252 ITKDFELEETDEEKAEREKEIKEYEPLTK 280
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 31.6 bits (72), Expect = 2.2
Identities = 5/73 (6%), Positives = 15/73 (20%), Gaps = 3/73 (4%)
Query: 476 MKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTP 535
I + K + + + E + + D + +
Sbjct: 905 KSVYLGSNETGDSITAVQAKLKNLEAFDGEC---QSLEGQSNSDLLSILAQLTELNYNGV 961
Query: 536 KLEDEAQLDAIKK 548
E + +
Sbjct: 962 PELTERKDTFFAQ 974
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 2.3
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 11/38 (28%)
Query: 712 DKARELRSL-SRGKLRVREVNGRTFMPTGDPSNCVNAS 748
+K + L+ L + KL + P+ + A+
Sbjct: 18 EK-QALKKLQASLKL---------YADDSAPALAIKAT 45
Score = 29.5 bits (65), Expect = 4.6
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 523 EKKEEEKEE--------DKTPKLEDEAQLD 544
EK+ +K + D P L +A ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 30.9 bits (71), Expect = 2.8
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 14/68 (20%)
Query: 479 DQAEYIEEK-----KIKEIVKKH---SQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 530
+ +YI +K KIKE V K+ + I + L E +L E EE+++ +
Sbjct: 232 SEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGAL------ELKLQELSAEERQKYLEA 285
Query: 531 EDKTPKLE 538
L
Sbjct: 286 NMTQSALP 293
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 30.9 bits (70), Expect = 2.8
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 509 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKK 548
E E + E + EE K E +++ ++ +
Sbjct: 198 ELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 31.0 bits (69), Expect = 2.9
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 21/83 (25%)
Query: 480 QAEYIEEKKIKEIVKK-HSQFIGYPIKLLVEKEREKEL--------------------SE 518
QA + + + ++V K +Q ++ E+ +EL +
Sbjct: 258 QAAIEDPEVVPDLVSKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTAS 317
Query: 519 DEEEEKKEEEKEEDKTPKLEDEA 541
+++ + + +E D +++A
Sbjct: 318 EDDADADDAAEEADDDDDDDEDA 340
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 30.5 bits (68), Expect = 3.4
Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 463 SEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKERE--KELSEDE 520
E R ++H+ E+ + ++ KE + ++ +L EK+ K L E
Sbjct: 77 VELKERLEMELIHLGEEYHD--GIRRRKE--QHATEQTAKITELAREKQIAELKALKESS 132
Query: 521 EEEKKEEEKEEDK---------TPKLEDEAQLDAIKKVFLSQIICIGSDRIVKMQLQ 568
E K+ +K+ + D+A + +KK + I I + +
Sbjct: 133 ESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEK 189
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 30.8 bits (70), Expect = 3.6
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 477 KEDQAEYIEEKKIKEIVKKHSQ--------FIGYPIKLLVEKEREKELSEDEEEEKKEEE 528
K+ +A IEE ++K+ K S+ +LV E E + ++ E
Sbjct: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000
Query: 529 KEEDKTPKLEDEAQLDAIKKVFLSQIICIGSDRIVK 564
D+ E + QL+ + + + K
Sbjct: 1001 GLTDE----EKQNQLEQLAEQYDELKHEFEKKLEAK 1032
>3zud_A GH61 isozyme A; hydrolase, degradation of recalcitrant biomass; HET:
HIC NAG TAM; 1.25A {Thermoascus aurantiacus} PDB: 2yet_A*
Length = 228
Score = 30.1 bits (67), Expect = 4.2
Identities = 29/193 (15%), Positives = 54/193 (27%), Gaps = 34/193 (17%)
Query: 1121 GDRYFYEGPPATNPGAFTPGKQLTLTSLTSLASLCIFSCFQ------------ALDKIR- 1167
++Y Y P T L T + I C + +
Sbjct: 19 VNQYPYMSNPPEVIAWSTTATDLGFVDGTGYQTPDI-ICHRGAKPGALTAPVSPGGTVEL 77
Query: 1168 -----PSNHPGPNSLMDQPCRGGAAPGPGDGDVVANVNNNNNNNNNNNITNVYFFLFPGF 1222
P +H GP PC G + + + N++N +
Sbjct: 78 QWTPWPDSHHGPVINYLAPCNGDCSTVDKTQLEFFKIAESGLINDDNPPGI--------W 129
Query: 1223 GQDPIIPNKEEKTLTI---IDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ----AGADI 1275
D +I T+TI I G + + +++ + G + + + + G
Sbjct: 130 ASDNLIAANNSWTVTIPTTIAPGNYVLRHEIIALHSAQNQDGAQNYPQCINLQVTGGGSD 189
Query: 1276 SMIGQFGVGFYSA 1288
+ G G Y
Sbjct: 190 NPAGTLGTALYHD 202
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 30.7 bits (69), Expect = 4.8
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 24/88 (27%)
Query: 227 PNARVLSRVFLPDRNISDVHTRMYLEFSQLVAHDITLNPQESTAVPTRGLR----GE--- 279
P +R + ++S+ F + D+ L+ + + R R GE
Sbjct: 734 PRSRDVIAKLASTVDVSNE------GFKFMAFKDVVLD----SGIEARISRISFSGELAF 783
Query: 280 -------FGDDLAARDIQRGRDYGLRPY 300
G + G ++ + PY
Sbjct: 784 EIAVPAWHGLRVWEDVYAAGEEFNITPY 811
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 29.6 bits (67), Expect = 5.1
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 17/56 (30%)
Query: 477 KEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEED 532
K+ +++Y K++KE V+K E ++ +D++++ +++ E D
Sbjct: 131 KDHKSQY--VKRVKETVEKSW---------------EDDMDDDDDDDDDDDDDEAD 169
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 30.2 bits (69), Expect = 5.1
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 479 DQAEYIEEK-----KIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 530
+ +++ +K KIK+ + ++S G + + + E+ L+ EEE EE K+
Sbjct: 234 SERDFLRQKNKYLPKIKKWIDENSP--GDTL-IPMSVAFEERLTNFTEEEAIEECKK 287
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase,
alpha-helical domain, structural genomics; NMR {Mus
musculus} SCOP: a.4.9.1
Length = 104
Score = 28.1 bits (63), Expect = 6.0
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 478 EDQAEYIEE---KKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKE-EEKEEDK 533
+ +Y + +K+ + K R++ +++ + ++ +EK +
Sbjct: 16 AEIVKYTKIIAMEKLYAVFT-----DYEHDK----VSRDEAVNKIRLDTEEHLKEKFPEV 66
Query: 534 TPKLEDEAQLDAIKKVFLSQII 555
E+ K+VF S I+
Sbjct: 67 DQFEIIESFNIVAKEVFRSIIL 88
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase
III TAU subunit, transferase; HET: DNA; NMR {Escherichia
coli}
Length = 128
Score = 28.6 bits (64), Expect = 6.2
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 462 NSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK-EREKELSEDE 520
N+ + LH++ Q +++ + S G ++L + + + + E
Sbjct: 45 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 104
Query: 521 EEEKKEEEKEE 531
+ EEK
Sbjct: 105 WRQAIYEEKLA 115
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding
motif, structural genomics, PSI-2, Pro structure
initiative; 1.70A {Rhodococcus SP}
Length = 194
Score = 29.3 bits (66), Expect = 6.2
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Query: 204 LMRPYYEDGVSSYRVSQVDASPLPNARVLSRVFLPDRNISDVHTRMYLEFSQLVAHDITL 263
E + DA+ L R+L R +P + R+ +D +
Sbjct: 61 SYEHISEATDRRIAEALGDATGLDALRILCREVMPINEEQLLEARIAASLWPRAMYDEQM 120
Query: 264 NPQESTAVPTRGLRGEFGDDLAARDIQRGRDYGLRPYVD 302
+ R + A +++ R+ G +D
Sbjct: 121 --AATNRRTMDNWR-----EQMAIFLEQAREEGSVGDID 152
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.5 bits (65), Expect = 6.3
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 477 KEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEE--EEKKEEEKEEDK 533
+E+Q + ++E V + + +K+ E+ E E+ K + DK
Sbjct: 106 REEQRKRLQELDAASKVMEQE------WREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 6.6
Identities = 23/139 (16%), Positives = 36/139 (25%), Gaps = 31/139 (22%)
Query: 862 RDELVYQEARRLVIGCFQHIVYNEWL---PILIGESYTKDVGLSPTSSGYFQGYDP---- 914
R ++ EA + Q + + I GL+ G +
Sbjct: 1290 RTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKA 1349
Query: 915 -EVNPSTLADFAAGAFRGESYTKDVGLSPTSS--GYFQGYDPEVNPSTLADFAAGAFRGL 971
+ N S + G S V G+ +G AAGA+
Sbjct: 1350 NDKNESATINEMMKHL-GRSEGNPVIGVFQKFLTGHPKG-------------AAGAWMMN 1395
Query: 972 -------HSLIPGTIKLVN 983
+IPG N
Sbjct: 1396 GALQILNSGIIPGNRNADN 1414
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 29.2 bits (65), Expect = 6.9
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 505 KLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKKV 549
KL ++++E L +++ ++ + E+ ED+ K+ D+A + IKK
Sbjct: 110 KLTKKEKKEANLFPEQQNKEIKAERVEDQ--KVVDKALIAEIKKT 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.6 bits (66), Expect = 7.1
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 487 KKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDK 533
I++++ + + Y L +R K +E KE ++ K
Sbjct: 200 DCIEDLLMEKNGDH-YTNGLYSLIQRSKCGPVGSDERVKEFKQSLIK 245
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.9 bits (64), Expect = 7.3
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 475 HMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK-----EREKELSEDEEEEKKEEEK 529
H K+ E + +K+ ++ VK G + L+ E+ E K E++ + KE++K
Sbjct: 58 HHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKK 117
Query: 530 EEDKTPKLEDEAQLDAIKKVFLSQ 553
E K E F Q
Sbjct: 118 AEKAARKAEKAKSAGTQSSKFSKQ 141
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 29.5 bits (67), Expect = 8.3
Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 484 IEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQL 543
+ +++K ++++ I+ + + +++ E +EE + E + K E E L
Sbjct: 17 LTPEQMKNYGMEYAK-----IEEIENITNRIKETQEFIELLREEGENELEIEKYEKE--L 69
Query: 544 DAIKKVFL 551
D + + L
Sbjct: 70 DQLYQELL 77
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 29.5 bits (67), Expect = 8.6
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 1239 IDSGIGMTKADLVNNLGT----IAKSGTKAFMEALQAGADISMIGQFGVG 1284
+D ++K +L+N +G + +S TK + ++ G + +I + G+G
Sbjct: 29 VDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIG 78
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.8 bits (66), Expect = 8.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 505 KLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDA 545
K+L + E EK E E E E K E E++ +A
Sbjct: 692 KILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEA 732
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 29.6 bits (67), Expect = 8.9
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 1239 IDSGIGMTKADLVNNLGT----IAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 1292
+ G + L+ + + +S T E L A + ++ + GVG + + A
Sbjct: 27 VRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDA 84
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 28.8 bits (65), Expect = 9.2
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 510 KEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKKVFL 551
+ER E + +++ E +E + + E +L +K +L
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYL 43
>3h6x_A Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Streptococcus
mutans}
Length = 148
Score = 28.4 bits (64), Expect = 9.3
Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 258 AHDITLNPQESTAVPTRGLRGEFGDDLAA 286
A ++ VPT G++
Sbjct: 35 AERTEISAGAIVLVPT-GVKAYMQVGEVL 62
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus
horikoshii}
Length = 151
Score = 28.4 bits (63), Expect = 9.4
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 469 GTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEE 528
G+ + D+A EK++KE + + L E E+ + +E ++++
Sbjct: 87 GSGYAVERSIDEAISFLEKRLKEYDEAIKKT----QGALAELEKRIGEVARKAQEVQQKQ 142
Query: 529 KEED-KTPK 536
K K
Sbjct: 143 SMTSFKVKK 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.403
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,406,158
Number of extensions: 1343018
Number of successful extensions: 3871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3636
Number of HSP's successfully gapped: 150
Length of query: 1386
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1281
Effective length of database: 3,770,088
Effective search space: 4829482728
Effective search space used: 4829482728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.8 bits)