RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16067
(1386 letters)
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 199 bits (506), Expect = 1e-54
Identities = 114/584 (19%), Positives = 183/584 (31%), Gaps = 184/584 (31%)
Query: 596 GPKCCSDSGDRVRSTSGNCRPILIPSNDDFYSQFNRRCLEYKRSLAINCSVGALQPDKIC 655
C + + C P+ IP ND C+ + RS C
Sbjct: 104 AVNCETSCVQQ-----PPCFPLKIPPNDPRIKN-QADCIPFFRSCPA------------C 145
Query: 656 PGRESNPRPSAYKADVLATKLIRLKNFFFTDVETCTFQIVQSTHFIDVSFMYGSHPDKAR 715
PG R QI T F+D S +YGS AR
Sbjct: 146 PGSNITIRN----------------------------QINALTSFVDASMVYGSEEPLAR 177
Query: 716 ELRSLSRGKLRVREVNGRTFMPTGDPSNCVNASSNICYDAGDIRVNQQLDLAVSQTVWLR 775
LR++S + + F G L
Sbjct: 178 NLRNMSNQLGLLAV--NQRFQDNGRA-------------------------------LLP 204
Query: 776 FHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGDIRVNQQLDLA 835
F N + + N S I CF L GD R ++ +L
Sbjct: 205 FDNLHDDPCLLTNRSAR--------------IPCF-----------LAGDTRSSEMPELT 239
Query: 836 VSQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGESY 895
T+ LR HN +A +L NP W E +YQEAR++V Q I Y ++LP+++G +
Sbjct: 240 SMHTLLLREHNRLATELKSLNPRWD--GERLYQEARKIVGAMVQIITYRDYLPLVLGPTA 297
Query: 896 TKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGESYTKDVGLSPTSSGYFQGYDPEV 955
+ ++ Y+ V+P F
Sbjct: 298 MRKYL------PTYRSYNDSVDPRIANVFTN----------------------------- 322
Query: 956 NPSTLADFAAGAFRGLHSLIPGTIKLVNER---RVTNQELPFSSTMQHPGDILEVMDVFD 1012
AFR H+LI + ++ R N +P S ++ D
Sbjct: 323 -----------AFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVL-EGGID 370
Query: 1013 STLRGLTNQLQQYQ--DRFITEQTIDFLFR-VGSLSLEKVIVDL-VGLTLGF-FYLWYCG 1067
LRGL + ++ ++ + LF V + L+ +++ G Y +
Sbjct: 371 PILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRR 430
Query: 1068 GFLLQ-----------------VTRLSQVYRGVNDIDYYIGGLLESVIRGTLSSPSFRCV 1110
L +L + Y N+ID ++GG+ E + R P C+
Sbjct: 431 FCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACI 490
Query: 1111 FAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLTSLASL 1154
F + + GDR+++E N G F+ +Q + SL +
Sbjct: 491 IGTQFRKLRDGDRFWWE-----NEGVFSM-QQRQALAQISLPRI 528
Score = 134 bits (338), Expect = 4e-33
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 278 GEFGDDLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFM-DSEQVTRLSQVYRG 336
G DL A ++QR RD+GL Y +R CGL + G L + + + +L + Y
Sbjct: 403 MRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGT 462
Query: 337 VNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQ 396
N+ID ++GG+ E + R P C+ F + + GDR+++E N G F+ +Q
Sbjct: 463 PNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWE-----NEGVFSM-QQ 516
Query: 397 LTLTSLTSLAS 407
+ SL
Sbjct: 517 RQALAQISLPR 527
Score = 102 bits (255), Expect = 7e-23
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 173 CNRRTKYRTLDGTCNNLRRPWWGAVDTAHVRLMRPYYEDGVSSYRVS----QVDASPLPN 228
C + KYRT+ G CNN R P GA + A VR + YEDG S + + P+
Sbjct: 1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVAL 60
Query: 229 ARVLSRVFL---PDRNISD-VHTRMYLEFSQLVAHDITLNPQES 268
AR +S + D+ D + M++++ QL+ HD+ P+ +
Sbjct: 61 ARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 104
Score = 34.3 bits (78), Expect = 0.13
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 540 EAQLDAIKKVFLSQIICIGSDRIVKMQLQSFYMPSERQFNVTLSDNLHLDL 590
Q A+ ++ L +IIC + + F S + V S L+L
Sbjct: 514 MQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNL 564
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 176 bits (448), Expect = 2e-47
Identities = 51/361 (14%), Positives = 99/361 (27%), Gaps = 81/361 (22%)
Query: 809 CFQHIVYNEWLPILIGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQ 868
E L +G L + T+WLR H V + L Q++P W DE ++Q
Sbjct: 201 MIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWG--DEQLFQ 258
Query: 869 EARRLVIGCFQHIVYNEWLPILIGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGA 928
++ ++IG IV +++ L G +
Sbjct: 259 TSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPEL------------------------- 293
Query: 929 FRGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERRVT 988
++ + H L+P T +
Sbjct: 294 ---------------------LFNQQFQYQNRIASEFNTLYHWHPLLPDTF------NIE 326
Query: 989 NQELPFSSTMQHPGDILEVMDVFDSTLRGLTNQLQQYQDRFITEQTIDFLFRVGSLSLEK 1048
+QE F + + +LE + T Q+ + V S+++
Sbjct: 327 DQEYSFKQFLYNNSILLE--HGLTQFVESFTRQIAGRVAGGRN--VPIAVQAVAKASIDQ 382
Query: 1049 VIVDLVGLTLGF-FYLWYCGGFLLQ--------------VTRLSQVYRGVNDIDYYIGGL 1093
+ + Y F L+ L +Y ++ ++ Y L
Sbjct: 383 ------SREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALL 436
Query: 1094 LESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLTSLAS 1153
+E + + + A + G+ P F + + S+ S
Sbjct: 437 VEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQY--WKPSTFGGEVGFKIINTASIQS 494
Query: 1154 L 1154
L
Sbjct: 495 L 495
Score = 155 bits (393), Expect = 2e-40
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 682 FFFTDVETCTFQIVQSTHFIDVSFMYGSHPDKARELRSLSRGKLRVREVNGRTFMPTGDP 741
FF TD + H +D++ +YG D+ +LR GKL+ + + G + PT
Sbjct: 137 FFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 196
Query: 742 SNCV-----NASSNICYDAGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDE 796
+ + N+ + G L + T+WLR H V + L Q++P W DE
Sbjct: 197 TQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWG--DE 254
Query: 797 LVYQEARRLVIGCFQHIVYNEWLPILIGD 825
++Q ++ ++IG IV +++ L G
Sbjct: 255 QLFQTSKLILIGETIKIVIEDYVQHLSGY 283
Score = 130 bits (328), Expect = 4e-32
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 4/129 (3%)
Query: 279 EFGDDLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMDSEQVTRLSQVYRGVN 338
+A I + R+ + +YR+ L SF +L + E L +Y ++
Sbjct: 370 IAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDID 427
Query: 339 DIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLT 398
++ Y L+E + + + A + G+ P F
Sbjct: 428 VMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQY--WKPSTFGGEVGFK 485
Query: 399 LTSLTSLAS 407
+ + S+ S
Sbjct: 486 IINTASIQS 494
Score = 50.7 bits (121), Expect = 1e-06
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 15/95 (15%)
Query: 171 PQCNRRTKYRTLDGTCNNLRRPWWGAVDTAHVRLMRPYYEDGVSSYRVSQVDASPLPNAR 230
P N Y++ + N + + R + P +D + V LP+++
Sbjct: 56 PTYNVHYGYKSWEAFSNL----------SYYTRALPPVADDCPTPMGV--KGNKELPDSK 103
Query: 231 VLSRVFLPDRNISDVHTR---MYLEFSQLVAHDIT 262
+ L R M+ F+Q
Sbjct: 104 EVLEKVLLRREFIPDPQGSNMMFAFFAQHFTAQFF 138
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 156 bits (396), Expect = 6e-44
Identities = 119/145 (82%), Positives = 137/145 (94%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 1286
+IPNK+++TLTI+D+GIGMTKADL+NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY
Sbjct: 64 LIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 123
Query: 1287 SAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIE 1346
SAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D EP+GRGTK++LH+KEDQ EY+E
Sbjct: 124 SAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLE 183
Query: 1347 EKKIKEIVKKHSQFIGYPIKLLVEK 1371
E++IKEIVKKHSQFIGYPI L VEK
Sbjct: 184 ERRIKEIVKKHSQFIGYPITLFVEK 208
Score = 95.5 bits (237), Expect = 9e-23
Identities = 58/77 (75%), Positives = 69/77 (89%)
Query: 434 MTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIV 493
+TV +KHNDDEQY WESSAGGSFT++ D EP+GRGTK++LH+KEDQ EY+EE++IKEIV
Sbjct: 132 VTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIV 191
Query: 494 KKHSQFIGYPIKLLVEK 510
KKHSQFIGYPI L VEK
Sbjct: 192 KKHSQFIGYPITLFVEK 208
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 165 bits (419), Expect = 7e-44
Identities = 57/352 (16%), Positives = 107/352 (30%), Gaps = 75/352 (21%)
Query: 815 YNEWLPILIGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLV 874
+ +G L + T+WLR HN V + L ++P+W DE ++Q AR ++
Sbjct: 206 IPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWG--DEQLFQTARLIL 263
Query: 875 IGCFQHIVYNEWLPILIGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGESY 934
IG IV E++ L G +DPE+
Sbjct: 264 IGETIKIVIEEYVQQLSGYFLQLK-------------FDPELLF---------------- 294
Query: 935 TKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERRVTNQELPF 994
G + +F H L+P + RV Q+ +
Sbjct: 295 ---------------GAQFQYRNRIAMEFN--QLYHWHPLMPDSF------RVGPQDYSY 331
Query: 995 SSTMQHPGDILEVMDVFDSTLRGLTNQLQQYQDRFITEQTID-FLFRVGSLSLEKVIVDL 1053
+ + +++ ++ + + Q R + ID + V +++ V
Sbjct: 332 EQFLFNTSMLVD--YGVEALVDAFSRQPAG---RIGGGRNIDHHILHVAVDVIKESRV-- 384
Query: 1054 VGLTLGFFYLWYCGGFLLQ-----------VTRLSQVYRGVNDIDYYIGGLLESVIRGTL 1102
+ L Y G L ++Y ++ +++Y G LLE ++
Sbjct: 385 LRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSI 444
Query: 1103 SSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLTSLASL 1154
S + A + G+ L +L L
Sbjct: 445 FGESMIEMGAPFSLKGLLGNPICSPEYW-KASTFGGEV-GFNLVKTATLKKL 494
Score = 159 bits (403), Expect = 1e-41
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 682 FFFTDVETCTFQIVQSTHFIDVSFMYGSHPDKARELRSLSRGKLRVREVNGRTFMPTGDP 741
FF T + H +D+ +YG + ++ +LR GKL+ + +NG + P+ +
Sbjct: 136 FFKTSGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEE 195
Query: 742 SNCV-----NASSNICYDAGDIRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDE 796
+ + G L + T+WLR HN V + L ++P+W DE
Sbjct: 196 APVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWG--DE 253
Query: 797 LVYQEARRLVIGCFQHIVYNEWLPILIGD 825
++Q AR ++IG IV E++ L G
Sbjct: 254 QLFQTARLILIGETIKIVIEEYVQQLSGY 282
Score = 121 bits (305), Expect = 3e-29
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 4/129 (3%)
Query: 279 EFGDDLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMDSEQVTRLSQVYRGVN 338
+A I+ R L+P+ +YR+ G+ SF +L + E L ++Y ++
Sbjct: 369 HHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDID 426
Query: 339 DIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLT 398
+++Y G LLE ++ S + A + G+
Sbjct: 427 ALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYW-KASTFGGEV-GFN 484
Query: 399 LTSLTSLAS 407
L +L
Sbjct: 485 LVKTATLKK 493
Score = 50.4 bits (120), Expect = 1e-06
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 15/95 (15%)
Query: 171 PQCNRRTKYRTLDGTCNNLRRPWWGAVDTAHVRLMRPYYEDGVSSYRVSQVDASPLPNAR 230
P N Y + + N + + R++ D + + LP+A
Sbjct: 55 PTYNIAHDYISWESFSNV----------SYYTRILPSVPRDCPTP--MGTKGKKQLPDAE 102
Query: 231 VLSRVFLPDRNISDVHTR---MYLEFSQLVAHDIT 262
LSR FL R M+ F+Q H
Sbjct: 103 FLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTHQFF 137
Score = 30.3 bits (68), Expect = 2.1
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 532 DKTPKLEDEAQLDAIKKVFLSQIICIGSDRIVKMQLQSFYMP 573
K E + +K L +++C+ + + F++P
Sbjct: 472 WKASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVS---FHVP 510
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 213
Score = 154 bits (389), Expect = 6e-43
Identities = 104/152 (68%), Positives = 125/152 (82%), Gaps = 1/152 (0%)
Query: 1224 QDPIIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGV 1283
I P E+K L I DSGIGMTKA+L+NNLGTIAKSGTKAFMEAL AGAD+SMIGQFGV
Sbjct: 62 FIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGV 121
Query: 1284 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNS-EPLGRGTKIVLHMKEDQA 1342
GFYS +LVAD+V V SK NDDEQYIWES+AGGSFT+ D E +GRGT + L +K+DQ
Sbjct: 122 GFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 181
Query: 1343 EYIEEKKIKEIVKKHSQFIGYPIKLLVEKERE 1374
EY+EEK+IKE++K+HS+F+ YPI+L+V KE E
Sbjct: 182 EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVE 213
Score = 96.7 bits (240), Expect = 5e-23
Identities = 49/81 (60%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Query: 434 MTVTSKHNDDEQYIWESSAGGSFTIKPDNS-EPLGRGTKIVLHMKEDQAEYIEEKKIKEI 492
+ V SK NDDEQYIWES+AGGSFT+ D E +GRGT + L +K+DQ EY+EEK+IKE+
Sbjct: 133 VQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEV 192
Query: 493 VKKHSQFIGYPIKLLVEKERE 513
+K+HS+F+ YPI+L+V KE E
Sbjct: 193 IKRHSEFVAYPIQLVVTKEVE 213
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
9615]}
Length = 227
Score = 147 bits (373), Expect = 1e-40
Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 5/163 (3%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG-----ADISMIGQF 1281
I +KE+ L + D+G+GMT+ +LV NLGTIAKSGT F+ + + +IGQF
Sbjct: 63 IKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQF 122
Query: 1282 GVGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQ 1341
GVGFYSA+LVADKV VTSKHN+D Q+IWES + I LGRGT I L +KE+
Sbjct: 123 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEA 182
Query: 1342 AEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEV 1384
++Y+E IK +VKK+SQFI +PI + K + + E+
Sbjct: 183 SDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWEL 225
Score = 90.1 bits (223), Expect = 1e-20
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 434 MTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIV 493
+ VTSKHN+D Q+IWES + I LGRGT I L +KE+ ++Y+E IK +V
Sbjct: 136 VIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLV 195
Query: 494 KKHSQFIGYPIKLLVEKEREKELSEDEEE 522
KK+SQFI +PI + K + + E
Sbjct: 196 KKYSQFINFPIYVWSSKTGGGGKTVWDWE 224
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 47.6 bits (113), Expect = 4e-07
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 7 QKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ 41
++A +++ + V LL + +LL+ TLEDP
Sbjct: 69 KRAADTEDEAKFSEWVELLLDQALLAERGTLEDPN 103
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 35.6 bits (82), Expect = 0.009
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 476 MKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTP 535
K + AE + + E++K + E ERE EE + +E
Sbjct: 49 KKLEAAEERRKYQEAELLKH--------LAEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100
Query: 536 KLE-----DEAQLDAIKK 548
K+E EA L A+ +
Sbjct: 101 KMESNKENREAHLAAMLE 118
Score = 29.1 bits (65), Expect = 2.0
Identities = 7/69 (10%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 474 LHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDK 533
E + ++ +K + + ++ E E E+ ++K
Sbjct: 72 KREHEREVIQKAIEENNNFIKMAKEKL--------AQKMESNKENREAHLAAMLERLQEK 123
Query: 534 TPKLEDEAQ 542
E+ +
Sbjct: 124 DKHAEEVRK 132
Score = 27.5 bits (61), Expect = 5.2
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 477 KEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 530
A+ +K++ + + ++E+ +EK+ EE K +E KE
Sbjct: 90 FIKMAKEKLAQKMESNKENREAHL----AAMLERLQEKDK-HAEEVRKNKELKE 138
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 34.0 bits (77), Expect = 0.14
Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 18/116 (15%)
Query: 468 RGTKIVLHMKEDQAEYIEE----------KKIKEIVK--KHSQFIGYPIKLLVEKE-REK 514
+ + Q ++I+ K I++ ++ F + +
Sbjct: 596 ERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPND 655
Query: 515 ELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKKVFLSQIICIGSDRIVKMQLQSF 570
E++E + K EED+ ED + + + ++ M++ S
Sbjct: 656 EIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGT-----YEYLLGMRIWSL 706
Score = 31.3 bits (70), Expect = 1.1
Identities = 12/115 (10%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 430 RGGPMTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYI----- 484
+ G S +++ + I + S ++S EY+
Sbjct: 644 KEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRI 703
Query: 485 ------EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDK 533
+K+ + ++ + +KL + +L E ++ +++ +
Sbjct: 704 WSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 30.9 bits (69), Expect = 0.92
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 475 HMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKT 534
+ E + E E+ E + ++ + + + +KE +E K+ EK E+
Sbjct: 198 TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE-RSYQEHLKQLTEKMENDR 256
Query: 535 PKLEDEAQLDAIKK 548
+L E + K
Sbjct: 257 VQLLKEQERTLALK 270
Score = 28.2 bits (62), Expect = 7.2
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 475 HMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKT 534
+ E Q + + + KE K+ ++ + + E K +E+++ K
Sbjct: 222 MLHEMQRKNEQMMEQKER-SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 280
Query: 535 PKLEDEAQ 542
+ E++
Sbjct: 281 -GFQKESR 287
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 31.0 bits (69), Expect = 0.96
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 458 IKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFI 500
+ D+ L + + ++ IEEK + + +H+ FI
Sbjct: 253 VTKDSETKLLLSEE-----EIEKGVEIEEKIVDNLQSRHTAFI 290
Score = 31.0 bits (69), Expect = 0.96
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 1319 IKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFI 1361
+ D+ L + + ++ IEEK + + +H+ FI
Sbjct: 253 VTKDSETKLLLSEE-----EIEKGVEIEEKIVDNLQSRHTAFI 290
>d1q8da_ a.228.1.1 (A:) GDNF receptor alpha {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 108
Score = 29.1 bits (65), Expect = 1.2
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 139 QASGLCKPRINKFKAQPEADQNIADQCFASQAPQCNRRTKYRTLDGTC 186
+ + +C+ R+ F + + C C Y L GT
Sbjct: 13 KTNYICRSRLADFFTNCQPESRSVSNCLKENYADCLLA--YSGLIGTV 58
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 30.0 bits (66), Expect = 1.2
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 509 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQ 542
+K+ K + ++ K +EE + K+ + +
Sbjct: 3 DKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDE 36
Score = 28.5 bits (62), Expect = 4.3
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 475 HMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK-----EREKELSEDEEEEKKEEEK 529
+ Y + ++ + K+ + + EK + K+L E ++ K K
Sbjct: 117 LHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNK 176
Query: 530 EEDKTPKLE 538
+ + ++
Sbjct: 177 VQKEKQDVD 185
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase
(SLT70), superhelical domain {Escherichia coli [TaxId:
562]}
Length = 450
Score = 30.6 bits (68), Expect = 1.6
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 283 DLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMD 323
D+ + + +DY L PY++YR++ + + +F+
Sbjct: 23 DVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVR 63
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 131
Score = 28.7 bits (64), Expect = 2.1
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 499 FIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAI----KKVFLSQ 553
P++ + + EKE ++ + + T L +E L+ KK F+
Sbjct: 74 LDDIPVEDV--RRFEKEFYLWLDQNGQHLLEHIRTTKDLPNEDDLNQAIEAFKKTFVVS 130
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 29.7 bits (67), Expect = 2.2
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 503 PIKLLVEKERE--KELSEDEEEEKKEEEKEEDK 533
+ + + E K++S++E+ + KEE ++ K
Sbjct: 104 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLK 136
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 29.0 bits (64), Expect = 3.5
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 487 KKIKEIVKKHS---QFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 530
KIK+ + ++S I + E+ L+ EEE EE K+
Sbjct: 237 PKIKKWIDENSPGDTLIPMSVAF------EERLTNFTEEEAIEECKK 277
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 28.8 bits (64), Expect = 5.0
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 510 KEREKELSEDEEEEKKEEEKEEDKTPKLEDEAQLDAIKKV 549
K + ++ E E E D+ K +++++ + +K +
Sbjct: 77 KPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 116
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 28.3 bits (62), Expect = 5.0
Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 12/140 (8%)
Query: 1227 IIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 1286
+ + + + D+G G+ + + S + F + Q G G
Sbjct: 29 KLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVET----FGFRGEALS 84
Query: 1287 SAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEY-- 1344
S ++D T + G K P G + +
Sbjct: 85 SLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKE 144
Query: 1345 ------IEEKKIKEIVKKHS 1358
E K+ +++ +
Sbjct: 145 FQRNIKKEYAKMVQVLHAYC 164
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 28.8 bits (64), Expect = 6.1
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 454 GSFTIKPDNSEPLGRGTKIVLHMKEDQAEYI-----------EEKKIKEIVKKHSQFIGY 502
G +P+ EP + ++ E QA+ I E +K+ + K+ I
Sbjct: 399 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 458
Query: 503 PIKLLVEKEREKELSEDEEEEKKEEEKEEDKT 534
+++L +R E+ +E E +E+ ++ +T
Sbjct: 459 LLRILGSADRLMEVIREELELVREQFGDKRRT 490
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1
alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 28.0 bits (61), Expect = 6.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 528 EKEEDKTPKLEDEAQLDAIKKVFLSQIICIGS 559
+ D ++ + L I+ +I CIGS
Sbjct: 163 KPPRDHVFQVNNFEALKTIQNQLREKIFCIGS 194
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.1 bits (63), Expect = 6.5
Identities = 5/33 (15%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 503 PIKLLVEKERE--KELSEDEEEEKKEEEKEEDK 533
+ + ++E K+L+ E+++ + E ++ ++
Sbjct: 96 KMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEE 128
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
3 {Cow (Bos taurus) [TaxId: 9913]}
Length = 131
Score = 27.2 bits (60), Expect = 6.7
Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 460 PDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVK--KHSQFIGYPIKLLVEKEREKELS 517
+ L RG ++ +K+ Q + ++ ++ + + E
Sbjct: 33 AATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKI--TKFENAFL 90
Query: 518 EDEEEEKKEEEKEEDKTPKLED--EAQLDAIKKVFLSQ 553
+ + + K+ + +A+L I FL+
Sbjct: 91 SHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAG 128
>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 26.5 bits (59), Expect = 7.3
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 484 IEEKKIKEIVKKHSQFIGYPIKLLVEKE 511
+ E++ + + +K +++IG ++LLV++
Sbjct: 4 LTEEETRVMFEKIAKYIGENLQLLVDRP 31
Score = 26.5 bits (59), Expect = 7.3
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 1345 IEEKKIKEIVKKHSQFIGYPIKLLVEKE 1372
+ E++ + + +K +++IG ++LLV++
Sbjct: 4 LTEEETRVMFEKIAKYIGENLQLLVDRP 31
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.0 bits (62), Expect = 7.3
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 471 KIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 530
++ + D + ++E F ++ + E ++ +E E K +EK
Sbjct: 272 ELGDYFVFDPKKL----SVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKA 327
Query: 531 EDK 533
E +
Sbjct: 328 EKE 330
>d3vuba_ b.34.6.1 (A:) CcdB {Escherichia coli [TaxId: 562]}
Length = 101
Score = 26.6 bits (59), Expect = 7.8
Identities = 6/52 (11%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 237 LPDRNISDVHTRMYLEFSQLVAHDITLNPQESTAVPTRGLRGEFGDDLAARD 288
L D+ +++ +++ + + +VP + E D +
Sbjct: 42 LSDKVSRELYPVVHIGDESWR-----MMTTDMASVPVSVIGEEVADLSHREN 88
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
[TaxId: 32046]}
Length = 743
Score = 28.3 bits (63), Expect = 8.3
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 1054 VGLTLGFFYLWYCGGFLLQVTRLSQVYRGVNDIDYYIGGLLESVI 1098
+ +T G F LW G T Q+Y IGGL+ + +
Sbjct: 125 IQITSGLFQLWRASGI----TNEFQLYCTA------IGGLVMAGL 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.403
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,238,901
Number of extensions: 258783
Number of successful extensions: 781
Number of sequences better than 10.0: 1
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 60
Length of query: 1386
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1289
Effective length of database: 1,075,786
Effective search space: 1386688154
Effective search space used: 1386688154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)