BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1607
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 14 SQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME 73
S P + + + IACG HCLA+T EG V SWG GQLG T+ ++
Sbjct: 106 SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLV 163
Query: 74 PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSW 133
P++I+A G+ + ++AG H+AA T+DG LY WGW G +G+ + D +V + +
Sbjct: 164 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 223
Query: 134 SEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
E K+ VACG RHT+++ +L+ GW++Y QL G
Sbjct: 224 GE-------KMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG 260
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 15/198 (7%)
Query: 19 MPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIR 78
+P R+ ++ +ACG+ H ++++ G ++++G GQLG+ + ++ P ++
Sbjct: 215 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD--LEDHLIPHKLE 272
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
ALS + QIS G H+ A T DG LY WGWN GQVGV LD P + + +D
Sbjct: 273 ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC--SPVQVRFPDD-- 328
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQ--VSVMTRLSVP---- 192
KVV V+CG RHTLA+ + N+++ G QL +G V + ++ LSV
Sbjct: 329 ---QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASG 385
Query: 193 EHVKNCPIVKLFAEHWNS 210
+H+++ I + W S
Sbjct: 386 QHIESSNIDPSSGKSWVS 403
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGI-VFSWGNGSRGQLGYPSSGTDANMEPREIR 78
P+++ + + CG DH +A +Q G+ V+SWG G G+LG+ +S +D P I+
Sbjct: 59 PTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNS-SDL-FTPLPIK 116
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
AL G+ + QI+ G H A T +G + +WG N GQ+G+ D +V P + + F+
Sbjct: 117 ALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKI---QAFE 171
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNC 198
IK+ VA G+ HT A+ +D L+G GW Y L +G ++ VPE V +
Sbjct: 172 GIRIKM--VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL-------VPERVTST 222
Query: 199 PIVKL 203
K+
Sbjct: 223 GGEKM 227
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 34 IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW 93
I+ G H +AL IV SWG G GQLG+ + + P ++ AL G +V ++ G
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA--EDRPSPTQLSALDGHQIVSVTCGAD 78
Query: 94 HSAARTQDGF-LYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSR 152
H+ A +Q G +Y+WGW + G++G DL P P+ I++ +ACG
Sbjct: 79 HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFT--PLPIK-----ALHGIRIKQIACGDS 131
Query: 153 HTLALCDDNSLWGCGWNEYNQLSMG 177
H LA+ + + G N+ QL +G
Sbjct: 132 HCLAVTMEGEVQSWGRNQNGQLGLG 156
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 85 VVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKV 144
V+ ISAG HS A + +WG GQ+G D P P S D I
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDR----PSPTQLSA-LDGHQI-- 70
Query: 145 VDVACGSRHTLALCDDN-SLWGCGWNEYNQLSMG 177
V V CG+ HT+A ++ GW ++ +L G
Sbjct: 71 VSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG 104
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 9/149 (6%)
Query: 29 LVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQI 88
+ + IACG HCLA+T EG V SWG GQLG T+ ++ P++I+A G+ + +
Sbjct: 109 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLVPQKIQAFEGIRIKMV 166
Query: 89 SAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA 148
+AG H+AA T+DG LY WGW G +G+ + D +V + + E K+ VA
Sbjct: 167 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE-------KMSMVA 219
Query: 149 CGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
CG RHT+++ +L+ GW++Y QL G
Sbjct: 220 CGWRHTISVSYSGALYTYGWSKYGQLGHG 248
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 19 MPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIR 78
+P R+ ++ +ACG+ H ++++ G ++++G GQLG+ + ++ P ++
Sbjct: 203 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD--LEDHLIPHKLE 260
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
ALS + QIS G H+ A T DG LY WGWN GQVGV LD P + + +D
Sbjct: 261 ALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC--SPVQVRFPDD-- 316
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQ 182
KVV V+CG RHTLA+ + N+++ G QL +G V +
Sbjct: 317 ---QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDR 357
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGI-VFSWGNGSRGQLGYPSSGTDANMEPREIR 78
P+++ + + CG DH +A +Q G+ V+SWG G G+LG+ +S +D P I+
Sbjct: 47 PTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNS-SDL-FTPLPIK 104
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
AL G+ + QI+ G H A T +G + +WG N GQ+G+ D +V P + + F+
Sbjct: 105 ALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKI---QAFE 159
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNC 198
IK+ VA G+ HT A+ +D L+G GW Y L +G ++ VPE V +
Sbjct: 160 GIRIKM--VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL-------VPERVTST 210
Query: 199 PIVKL 203
K+
Sbjct: 211 GGEKM 215
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 34 IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW 93
I+ G H +AL IV SWG G GQLG+ + + P ++ AL G +V ++ G
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA--EDRPSPTQLSALDGHQIVSVTCGAD 66
Query: 94 HSAARTQDGF-LYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSR 152
H+ A +Q G +Y+WGW + G++G DL P P+ I++ +ACG
Sbjct: 67 HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFT--PLPIK-----ALHGIRIKQIACGDS 119
Query: 153 HTLALCDDNSLWGCGWNEYNQLSMG 177
H LA+ + + G N+ QL +G
Sbjct: 120 HCLAVTMEGEVQSWGRNQNGQLGLG 144
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALS 81
D V ++CG+ H LA+T+ VF+WG G+ GQLG S D N P+ I ALS
Sbjct: 316 DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES-VDRNF-PKIIEALS 367
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 85 VVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKV 144
V+ ISAG HS A + +WG GQ+G D P P S D I
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED----RPSPTQLSA-LDGHQI-- 58
Query: 145 VDVACGSRHTLALCDDN-SLWGCGWNEYNQLSMG 177
V V CG+ HT+A ++ GW ++ +L G
Sbjct: 59 VSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG 92
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 14 SQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME 73
S P + + + IACG HCLA+T EG V SWG GQLG T+ ++
Sbjct: 96 SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGD--TEDSLV 153
Query: 74 PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSW 133
P++I+A G+ + ++AG H+AA T+DG LY WGW G +G+ + D +V + +
Sbjct: 154 PQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 213
Query: 134 SEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
E K VACG RHT+++ +L+ GW++Y QL G
Sbjct: 214 GE-------KXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHG 250
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 19 MPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIR 78
+P R+ + +ACG+ H ++++ G ++++G GQLG+ + ++ P ++
Sbjct: 205 VPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGD--LEDHLIPHKLE 262
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
ALS + QIS G H+ A T DG LY WGWN GQVGV LD P + + +D
Sbjct: 263 ALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQC--SPVQVRFPDD-- 318
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQ 182
KVV V+CG RHTLA+ + N+++ G QL +G V +
Sbjct: 319 ---QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDR 359
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 17/180 (9%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGI-VFSWGNGSRGQLGYPSSGTDANMEPREIR 78
P+++ + + CG DH +A +Q G V+SWG G G+LG+ +S +D P I+
Sbjct: 49 PTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNS-SDL-FTPLPIK 106
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
AL G+ + QI+ G H A T +G + +WG N GQ+G+ D +V P + E
Sbjct: 107 ALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFE--- 161
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNC 198
I++ VA G+ HT A+ +D L+G GW Y L +G ++ VPE V +
Sbjct: 162 --GIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL-------VPERVTST 212
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 34 IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW 93
I+ G H +AL IV SWG G GQLG+ + + P ++ AL G +V ++ G
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA--EDRPSPTQLSALDGHQIVSVTCGAD 68
Query: 94 HSAARTQDGF-LYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSR 152
H+ A +Q G +Y+WGW + G++G DL P P+ I++ +ACG
Sbjct: 69 HTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFT--PLPIK-----ALHGIRIKQIACGDS 121
Query: 153 HTLALCDDNSLWGCGWNEYNQLSMG 177
H LA+ + + G N+ QL +G
Sbjct: 122 HCLAVTXEGEVQSWGRNQNGQLGLG 146
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALS 81
D V ++CG+ H LA+T+ VF+WG G+ GQLG S D N P+ I ALS
Sbjct: 318 DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES-VDRNF-PKIIEALS 369
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 85 VVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKV 144
V+ ISAG HS A + +WG GQ+G D P P S D I
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDR----PSPTQLSA-LDGHQI-- 60
Query: 145 VDVACGSRHTLALCDDN-SLWGCGWNEYNQLSMG 177
V V CG+ HT+A ++ GW ++ +L G
Sbjct: 61 VSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHG 94
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 14 SQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME 73
S P + + + IACG HCLA+T EG V SWG GQLG T+ ++
Sbjct: 94 SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLV 151
Query: 74 PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSW 133
P++I+A G+ + ++AG H+AA T+DG LY WGW G +G+ + D +V + +
Sbjct: 152 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 211
Query: 134 SEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
E K+ VACG RHT+++ +L+ GW++Y QL G
Sbjct: 212 GE-------KMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG 248
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 19 MPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIR 78
+P R+ ++ +ACG+ H ++++ G ++++G GQLG+ + ++ P ++
Sbjct: 203 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD--LEDHLIPHKLE 260
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
ALS + QIS G H+ A T DG LY WGWN GQVGV LD P + + +D
Sbjct: 261 ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC--SPVQVRFPDD-- 316
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQ 182
KVV V+CG RHTLA+ + N+++ G QL +G V +
Sbjct: 317 ---QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDR 357
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGI-VFSWGNGSRGQLGYPSSGTDANMEPREIR 78
P+++ + + CG DH +A +Q G+ V+SWG G G+LG+ +S +D P I+
Sbjct: 47 PTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNS-SDL-FTPLPIK 104
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
AL G+ + QI+ G H A T +G + +WG N GQ+G+ D +V P + + F+
Sbjct: 105 ALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKI---QAFE 159
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNC 198
IK+ VA G+ HT A+ +D L+G GW Y L +G ++ VPE V +
Sbjct: 160 GIRIKM--VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL-------VPERVTST 210
Query: 199 PIVKL 203
K+
Sbjct: 211 GGEKM 215
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 34 IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW 93
I+ G H +AL IV SWG G GQLG+ + + P ++ AL G +V ++ G
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA--EDRPSPTQLSALDGHQIVSVTCGAD 66
Query: 94 HSAARTQDGF-LYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSR 152
H+ A +Q G +Y+WGW + G++G DL P P+ I++ +ACG
Sbjct: 67 HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFT--PLPIK-----ALHGIRIKQIACGDS 119
Query: 153 HTLALCDDNSLWGCGWNEYNQLSMG 177
H LA+ + + G N+ QL +G
Sbjct: 120 HCLAVTMEGEVQSWGRNQNGQLGLG 144
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALS 81
D V ++CG+ H LA+T+ VF+WG G+ GQLG S D N P+ I ALS
Sbjct: 316 DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES-VDRNF-PKIIEALS 367
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 85 VVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKV 144
V+ ISAG HS A + +WG GQ+G D P P S D I
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED----RPSPTQLSA-LDGHQI-- 58
Query: 145 VDVACGSRHTLALCDDN-SLWGCGWNEYNQLSMG 177
V V CG+ HT+A ++ GW ++ +L G
Sbjct: 59 VSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG 92
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 13/168 (7%)
Query: 14 SQVFHMPSRMDHFLDLVVTDIAC--GFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN 71
++ P+ ++ + + +A G HCLAL+ EG V+SWG G+LG+ +
Sbjct: 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR--SPC 147
Query: 72 MEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPM 131
PR I +L G+ VV ++AGG HSA T G LY WG G++G D + P +
Sbjct: 148 DRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL--KPKLV 205
Query: 132 SWSEDFDSQNIKVVDVACGS--RHTLALCDDNSLWGCGWNEYNQLSMG 177
Q +VVD+ACGS TL L DD+++W G +Y +L G
Sbjct: 206 E-----ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRG 248
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 9/138 (6%)
Query: 19 MPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIR 78
+P ++D L V + CG +ALT+ G V++WG G +LG+ S D PR+++
Sbjct: 255 VPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD--DHVRRPRQVQ 312
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
L G V+ I+ G H T+DG +Y WG N+ GQ+G +G + + P ++
Sbjct: 313 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG-DGTTN-AIQRPRLVA-----A 365
Query: 139 SQNIKVVDVACGSRHTLA 156
Q KV VACGS HTLA
Sbjct: 366 LQGKKVNRVACGSAHTLA 383
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 11/160 (6%)
Query: 20 PSRMDHFLDLVVTDIACGFD--HCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI 77
P ++ V DIACG L LT + V+SWG+G G+LG G+D P +I
Sbjct: 202 PKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG--RGGSDGCKVPMKI 259
Query: 78 RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
+L+GLGVV++ G S A T+ G +Y WG + ++G D H +
Sbjct: 260 DSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHG-------SDDHVRRPRQVQ 312
Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
Q KV+ +A GS H + +D ++ G N+ QL G
Sbjct: 313 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG 352
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 13/161 (8%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
P ++ + V D+A G H +T G +++WG G G+LG+ S + ++P+ + A
Sbjct: 150 PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS--EDQLKPKLVEA 207
Query: 80 LSGLGVVQIS--AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
L G VV I+ +G + T D +++WG + G++G G V PM
Sbjct: 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKV----PMK----I 259
Query: 138 DS-QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
DS + VV V CGS+ ++AL +++ G +Y++L G
Sbjct: 260 DSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHG 300
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 68/170 (40%), Gaps = 11/170 (6%)
Query: 42 LALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQD 101
L G ++ WG+ RGQLG G + P AL+ L VQ+ G A T D
Sbjct: 14 LYFQGSGTIYGWGHNHRGQLG-GIEGAKVKV-PTPCEALATLRPVQLIGGEQTLFAVTAD 71
Query: 102 GFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDN 161
G LYA G+ + V P + E IK V V G +H LAL +
Sbjct: 72 GKLYATGYGA--GGRLGIGGTESVSTPTLL---ESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 162 SLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSA 211
++ G E +L G S R V E ++ +V + A +SA
Sbjct: 127 EVYSWGEAEDGKLGHG----NRSPCDRPRVIESLRGIEVVDVAAGGAHSA 172
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 15 QVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEP 74
++ P ++ F + +A G DH L L +EG+VF+WGNG + QLG ME
Sbjct: 190 KIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKV------MER 243
Query: 75 REIRALS----GLGVVQ-ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLD--LVVHD 127
++ L GL V+ I++G H A T+D L +WG N GQ GV ++ +V
Sbjct: 244 FRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTK 303
Query: 128 PHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCG 167
P ++ + N+ + +A G H+L L D L+ CG
Sbjct: 304 PKRLALPD-----NVVIRSIAAGEHHSLILSQDGDLYSCG 338
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 30/205 (14%)
Query: 3 DHLASGPLKMLSQVFHMPSRMDHFLDLVVTD-IACGFDHCLALTQEGIVFSWGNG--SRG 59
+ L S P K+ + F + + L TD ++C AL G V++WG + G
Sbjct: 127 NELESTPAKIPRESFPPLAEGHKVVQLAATDNMSC------ALFSNGEVYAWGTFRCNEG 180
Query: 60 QLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVG--V 117
LG+ P ++ S +VQ++ G H ++G ++AWG Q+G V
Sbjct: 181 ILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKV 240
Query: 118 EGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
+ L DP P F +++K +A G H AL DN L G N++ Q
Sbjct: 241 MERFRLKTLDPRP------FGLRHVKY--IASGENHCFALTKDNKLVSWGLNQFGQ---- 288
Query: 178 CGVSQ-------VSVMTRLSVPEHV 195
CGVS+ V+ RL++P++V
Sbjct: 289 CGVSEDVEDGALVTKPKRLALPDNV 313
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANM--EPREIRALSGLGVVQI 88
V IA G +HC ALT++ + SWG GQ G D + +P+ + + + I
Sbjct: 259 VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSI 318
Query: 89 SAGGWHSAARTQDGFLYAWGWNNGGQVGV--EGKLDLVVHDPHPMSWSEDFDSQ--NI-K 143
+AG HS +QDG LY+ G + +VG+ + + D H + + ++ N+ K
Sbjct: 319 AAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPK 378
Query: 144 VVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLS 190
VA GS H++A+ + + G+ E + +G V TR+
Sbjct: 379 FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIK 425
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSG------TDANME 73
P R+ ++V+ IA G H L L+Q+G ++S G ++G P D + +
Sbjct: 304 PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGK 363
Query: 74 PREIRALSGLGVV----QISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
R + + L V ++AG HS A Q+G Y+WG+ VG L D
Sbjct: 364 ARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVG----LGPFEDDTE 419
Query: 130 PMSWSEDFDSQNIKVVDVACGSRHTLA 156
+ ++ +Q+ ++ V CG + +++
Sbjct: 420 VPTRIKNTATQDHNIILVGCGGQFSVS 446
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 38 FDHCLALTQEGIVFSWGNGSRGQLGY-PSSGTDANMEPR--EIRALSGLGVVQISAGGWH 94
+ H Q +F WG GS +LG P + PR ++ + GG H
Sbjct: 19 YKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMH 78
Query: 95 SAARTQDGFLYAWGWNNGGQVG 116
+ A ++ +++WG N+ G +G
Sbjct: 79 TLALDEESNVWSWGCNDVGALG 100
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 143 KVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
K++ A G HTLAL +++++W G N+ L
Sbjct: 68 KIISFAVGGMHTLALDEESNVWSWGCNDVGAL 99
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V G H + L++ G V+S+G G LG +S + M P ++ VVQ+SA
Sbjct: 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK--VVQVSA 118
Query: 91 GGWHSAARTQDGFLYAWG--WNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA 148
G H+AA T DG ++ WG +N G +G+ L+ + P+ D + VV VA
Sbjct: 119 GDSHTAALTDDGRVFLWGSFRDNNGVIGL---LEPMKKSMVPVQVQLD-----VPVVKVA 170
Query: 149 CGSRHTLALCDDNSLWGCGWNEYNQL 174
G+ H + L D L+ G E QL
Sbjct: 171 SGNDHLVMLTADGDLYTLGCGEQGQL 196
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 45 TQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGL--GVVQISAGGWHSAARTQDG 102
T+ G+V + G G GQLG N+ R+ AL + VVQ AGG H+ ++ G
Sbjct: 24 TEPGLVLTLGQGDVGQLGL-----GENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSG 78
Query: 103 FLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNS 162
+Y++G N+ G +G + ++ P + E KVV V+ G HT AL DD
Sbjct: 79 QVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE-------KVVQVSAGDSHTAALTDDGR 131
Query: 163 --LWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK-NCPIVKL 203
LWG + + N + + + M + VP V+ + P+VK+
Sbjct: 132 VFLWGS-FRDNNGV-----IGLLEPMKKSMVPVQVQLDVPVVKV 169
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 27 LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLG-----YPSSGTDANME----PR-- 75
LD+ V +A G DH + LT +G +++ G G +GQLG + + G +E P+
Sbjct: 162 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCV 221
Query: 76 EIRALSGLGVVQIS---AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMS 132
+++ G V+ G + + A + +G +Y +G +N Q+G G + P ++
Sbjct: 222 MLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFI--PQNLT 279
Query: 133 WSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLS 190
F + V + G HT+ + + + G EY +L +G G + S+ T +S
Sbjct: 280 ---SFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS 334
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANM-EPREI--RALSGLGVVQ 87
V+ +ACG A+T++G VF+WG G+ QLG +G D + P E+ + L V+
Sbjct: 339 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLG---TGQDEDAWSPVEMMGKQLENRVVLS 395
Query: 88 ISAGGWHSAARTQD 101
+S+GG H+ +D
Sbjct: 396 VSSGGQHTVLLVKD 409
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 37 GFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSA 96
G H + + EG +S G G+LG G + P I L V ++ G
Sbjct: 294 GQHHTVCMDSEGKAYSLGRAEYGRLGL-GEGAEEKSIPTLISRLPA--VSSVACGASVGY 350
Query: 97 ARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWS--EDFDSQ--NIKVVDVACGSR 152
A T+DG ++AWG Q+G D +WS E Q N V+ V+ G +
Sbjct: 351 AVTKDGRVFAWGMGTNYQLGTGQDED---------AWSPVEMMGKQLENRVVLSVSSGGQ 401
Query: 153 HTLALCDDN 161
HT+ L D
Sbjct: 402 HTVLLVKDK 410
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V G H + L++ G V+S+G G LG +S + M P ++ VVQ+SA
Sbjct: 50 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK--VVQVSA 107
Query: 91 GGWHSAARTQDGFLYAWGW---NNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV 147
G H+AA T DG ++ WG NN GV G L+ + P+ D + VV V
Sbjct: 108 GDSHTAALTDDGRVFLWGSFRDNN----GVIGLLEPMKKSMVPVQVQLD-----VPVVKV 158
Query: 148 ACGSRHTLALCDDNSLWGCGWNEYNQL 174
A G+ H + L D L+ G E QL
Sbjct: 159 ASGNDHLVMLTADGDLYTLGCGEQGQL 185
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 45 TQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGL--GVVQISAGGWHSAARTQDG 102
T+ G+V + G G GQLG N+ R+ AL + VVQ AGG H+ ++ G
Sbjct: 13 TEPGLVLTLGQGDVGQLGL-----GENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSG 67
Query: 103 FLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNS 162
+Y++G N+ G +G + ++ P + E KVV V+ G HT AL DD
Sbjct: 68 QVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE-------KVVQVSAGDSHTAALTDDGR 120
Query: 163 --LWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK-NCPIVKL 203
LWG + + N + + + M + VP V+ + P+VK+
Sbjct: 121 VFLWGS-FRDNNGV-----IGLLEPMKKSMVPVQVQLDVPVVKV 158
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 27 LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLG-----YPSSGTDANME----PR-- 75
LD+ V +A G DH + LT +G +++ G G +GQLG + + G +E P+
Sbjct: 151 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCV 210
Query: 76 EIRALSGLGVVQIS---AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMS 132
+++ G V+ G + + A + +G +Y +G +N Q+G G + P ++
Sbjct: 211 MLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFI--PQNLT 268
Query: 133 WSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLS 190
F + V + G HT+ + + + G EY +L +G G + S+ T +S
Sbjct: 269 ---SFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS 323
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANM-EPREI--RALSGLGVVQ 87
V+ +ACG A+T++G VF+WG G+ QLG +G D + P E+ + L V+
Sbjct: 328 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLG---TGQDEDAWSPVEMMGKQLENRVVLS 384
Query: 88 ISAGGWHSAARTQD 101
+S+GG H+ +D
Sbjct: 385 VSSGGQHTVLLVKD 398
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 37 GFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSA 96
G H + + EG +S G G+LG G + P I L V ++ G
Sbjct: 283 GQHHTVCMDSEGKAYSLGRAEYGRLGL-GEGAEEKSIPTLISRLPA--VSSVACGASVGY 339
Query: 97 ARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLA 156
A T+DG ++AWG Q+G D P M + +N V+ V+ G +HT+
Sbjct: 340 AVTKDGRVFAWGMGTNYQLGTGQDED--AWSPVEMMGKQ---LENRVVLSVSSGGQHTVL 394
Query: 157 LCDDN 161
L D
Sbjct: 395 LVKDK 399
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 11 KMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDA 70
K LS V +P DI+ G H L LT+ G ++S+G G LG +S +
Sbjct: 66 KRLSPVAGIPD---------AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS 116
Query: 71 NMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWG 108
+P ++ L G + ISAG HSA +DG ++AWG
Sbjct: 117 ESKP-DLIDLPGKALC-ISAGDSHSACLLEDGRVFAWG 152
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 48 GIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGL-GVVQISAGGWHSAARTQDGFLYA 106
G V GNG GQLG G D +E + + ++G+ V ISAGG H+ T+ G +Y+
Sbjct: 43 GNVLVCGNGDVGQLGL---GEDI-LERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYS 98
Query: 107 WGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGC 166
+G N+ G +G + D P D K + ++ G H+ L +D ++
Sbjct: 99 FGCNDEGALGRDTSEDGSESKP-------DLIDLPGKALCISAGDSHSACLLEDGRVFAW 151
Query: 167 GWNEYNQLSMG 177
G + +MG
Sbjct: 152 GSFRDSHGNMG 162
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 18/165 (10%)
Query: 23 MDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSS---------GTDANME 73
+D V IA G DH + LT G VF+ G +GQLG S G +
Sbjct: 173 IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLR 232
Query: 74 PREIRALSGLGVVQISAGGWHSAAR-TQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMS 132
P ++ I A + + R +Q ++A G NN Q+ E K P
Sbjct: 233 PTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE 292
Query: 133 WSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
+ + +A G HT+ L D G EY +L +G
Sbjct: 293 LKD--------IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLG 329
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 13 LSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANM 72
+ V P+ + + +V+ + CG A+T +G ++SWG+G QLG D +
Sbjct: 331 VKDVVEKPTIVKKLTEKIVS-VGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDG--DDEL 387
Query: 73 EPREI--RALSGLGVVQISAGGWHS 95
EP + + G ++ S GG H+
Sbjct: 388 EPIVVVSKNTQGKHMLLASGGGQHA 412
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 45 TQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFL 104
+Q ++++ G + QL + + G + + P + + I+ G H+ T D
Sbjct: 259 SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD---IRHIAGGQHHTVILTTDLKC 315
Query: 105 YAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSL- 163
G G++G+ G + VV P + + K+V V CG + A+ D L
Sbjct: 316 SVVGRPEYGRLGL-GDVKDVVEKPTIVKKLTE------KIVSVGCGEVCSYAVTIDGKLY 368
Query: 164 -WGCGWNEYNQLSMGCGVSQVSVMTRLS 190
WG G N NQL +G G ++ + +S
Sbjct: 369 SWGSGVN--NQLGVGDGDDELEPIVVVS 394
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 23/155 (14%)
Query: 34 IACGFDHCLALTQEGIVFSWGN--GSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG 91
I+ G H L ++G VF+WG+ S G +G G I + G I++G
Sbjct: 132 ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT----PIDLMEGTVCCSIASG 187
Query: 92 GWHSAARTQDGFLYAWGWNNGGQV-----------GVEGKLDLVVHDPHPMSWSEDFDSQ 140
H T G ++ G GQ+ G GK DL+ ++ ++ F++
Sbjct: 188 ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEA- 246
Query: 141 NIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLS 175
I + R + +W G N + QL+
Sbjct: 247 -IWATNYCTFMRES----QTQVIWATGLNNFKQLA 276
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 29/133 (21%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V IA G+ H LAL + G V WG GQL P A + GV I+A
Sbjct: 26 VDAIAGGYFHGLAL-KGGKVLGWGANLNGQLTMP--------------AATQSGVDAIAA 70
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGK----LDLV---------VHDPHPMSWSEDF 137
G +HS A +DG + AWG N GQ V + +D + + D ++W +D
Sbjct: 71 GNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDS 129
Query: 138 DSQNIKVVDVACG 150
D Q + G
Sbjct: 130 DGQTTVPAEAQSG 142
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 89/236 (37%), Gaps = 72/236 (30%)
Query: 13 LSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPS---SGTD 69
L+ MP+ +D IA G H LAL ++G V +WG GQ P+ SG D
Sbjct: 51 LNGQLTMPAATQSGVDA----IAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVD 105
Query: 70 A--------------------------NMEPREIRALSGLGVVQISAGGWHSAARTQDGF 103
A P E ++ GV + GG ++A ++G
Sbjct: 106 AIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQS----GVTALD-GGVYTALAVKNGG 160
Query: 104 LYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSL 163
+ AWG N GQ V P D DVA G H+LAL D +
Sbjct: 161 VIAWGDNYFGQTTV------------PAEAQSGVD-------DVAGGIFHSLALKDGKVI 201
Query: 164 -WGCGWNEYNQLSMGC----GVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLS 214
WG N Y Q ++ GVS ++ S+ +KN ++ W S+R +
Sbjct: 202 AWGD--NRYKQTTVPTEALSGVSAIASGEWYSLA--LKNGKVIA-----WGSSRTA 248
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 29/124 (23%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V IA G+ H LAL + G V WG GQL P A + GV I+A
Sbjct: 28 VDAIAGGYFHGLAL-KGGKVLGWGANLNGQLTMP--------------AATQSGVDAIAA 72
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGK----LDLV---------VHDPHPMSWSEDF 137
G +HS A +DG + AWG N GQ V + +D + + D ++W +D
Sbjct: 73 GNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDS 131
Query: 138 DSQN 141
D Q
Sbjct: 132 DGQT 135
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 89/236 (37%), Gaps = 72/236 (30%)
Query: 13 LSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPS---SGTD 69
L+ MP+ +D IA G H LAL ++G V +WG GQ P+ SG D
Sbjct: 53 LNGQLTMPAATQSGVDA----IAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVD 107
Query: 70 A--------------------------NMEPREIRALSGLGVVQISAGGWHSAARTQDGF 103
A P E ++ GV + GG ++A ++G
Sbjct: 108 AIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQS----GVTALD-GGVYTALAVKNGG 162
Query: 104 LYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSL 163
+ AWG N GQ V P D DVA G H+LAL D +
Sbjct: 163 VIAWGDNYFGQTTV------------PAEAQSGVD-------DVAGGIFHSLALKDGKVI 203
Query: 164 -WGCGWNEYNQLSMGC----GVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLS 214
WG N Y Q ++ GVS ++ S+ +KN ++ W S+R +
Sbjct: 204 AWGD--NRYKQTTVPTEALSGVSAIASGEWYSLA--LKNGKVIA-----WGSSRTA 250
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 86 VQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLV-----VHDPHPMSWSEDFDSQ 140
+Q +A G + ++D + W W G V ++ + V + D +SWS FD
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS--FDG- 1065
Query: 141 NIKVVDVACGSRHTLALCDDNSLWGCG 167
+KV +V G C ++ C
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLSCA 1092
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 86 VQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLV-----VHDPHPMSWSEDFDSQ 140
+Q +A G + ++D + W W G V ++ + V + D +SWS FD
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS--FDG- 1072
Query: 141 NIKVVDVACGSRHTLALCDDNSLWGCG 167
+KV +V G C ++ C
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLSCA 1099
>pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor
pdb|4EMV|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor
Length = 226
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 40 HCLALTQEGIVFSW--GNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA-GGWHSA 96
H + + ++F+ G GQ GY +SG L G+G ++A W
Sbjct: 88 HAMGIPTVEVIFTILHAGGKFGQGGYKTSG-----------GLHGVGSSVVNALSSWLEV 136
Query: 97 ARTQDGFLYAWGWNNGGQ 114
T+DG +Y + NGG+
Sbjct: 137 EITRDGAVYKQRFENGGK 154
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 64 PSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNN 111
PSSGT + R + + G V +AGG H A +Q G ++WG N
Sbjct: 444 PSSGTVQELNFRSNKNVWGYFSVA-AAGGLHEFADSQFGHCFSWGENR 490
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,928,866
Number of Sequences: 62578
Number of extensions: 342385
Number of successful extensions: 977
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 71
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)