Query psy1607
Match_columns 241
No_of_seqs 135 out of 1484
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 20:06:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 4.5E-40 1.6E-44 289.1 25.8 211 16-239 108-346 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 3.3E-40 1.1E-44 288.5 21.9 212 16-240 146-387 (389)
3 4d9s_A UVB-resistance protein 100.0 1.3E-39 4.4E-44 286.3 24.8 210 17-239 56-294 (406)
4 3kci_A Probable E3 ubiquitin-p 100.0 2.5E-39 8.6E-44 282.9 20.6 188 16-216 198-387 (389)
5 1a12_A RCC1, regulator of chro 100.0 1.1E-38 3.9E-43 280.7 24.2 223 5-239 127-408 (413)
6 3mvd_K Regulator of chromosome 100.0 2E-38 7E-43 279.8 24.5 224 5-240 143-418 (423)
7 3of7_A Regulator of chromosome 100.0 3E-38 1E-42 282.6 23.7 222 5-239 164-449 (473)
8 1a12_A RCC1, regulator of chro 100.0 3.3E-38 1.1E-42 277.8 21.1 188 18-217 216-410 (413)
9 3of7_A Regulator of chromosome 100.0 1.3E-37 4.3E-42 278.6 22.3 211 18-239 131-394 (473)
10 3mvd_K Regulator of chromosome 100.0 5.2E-37 1.8E-41 270.8 21.5 190 17-218 230-420 (423)
11 3qhy_B Beta-lactamase inhibito 100.0 2.3E-32 7.8E-37 229.0 18.6 190 7-239 41-271 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 5.6E-32 1.9E-36 226.7 18.2 171 28-238 23-235 (282)
13 4gbf_A Phikz131; 7-bladed beta 97.1 0.0013 4.4E-08 52.9 7.2 72 29-115 309-380 (400)
14 4gbf_A Phikz131; 7-bladed beta 97.0 0.0019 6.5E-08 51.9 6.8 73 83-175 309-381 (400)
15 1wp5_A Topoisomerase IV; broke 83.2 18 0.00062 29.8 13.2 133 28-175 38-179 (323)
16 1suu_A DNA gyrase subunit A; t 83.0 18 0.00061 29.6 16.3 133 28-176 46-187 (312)
17 3no0_A DNA gyrase subunit A; D 81.9 18 0.00063 29.0 14.2 124 27-176 22-152 (276)
18 3uc1_A DNA gyrase subunit A; D 80.9 22 0.00077 29.3 16.2 126 28-169 41-175 (327)
19 3l6v_A GYRA, DNA gyrase subuni 75.4 36 0.0012 28.7 17.6 128 27-170 44-180 (370)
20 1zi0_A DNA gyrase subunit A; b 70.2 42 0.0015 27.3 17.2 133 28-176 41-182 (307)
21 1k3i_A Galactose oxidase precu 64.7 41 0.0014 30.3 9.9 18 151-168 288-305 (656)
22 1p22_A F-BOX/WD-repeat protein 61.8 69 0.0024 26.6 15.2 68 29-110 174-241 (435)
23 1suu_A DNA gyrase subunit A; t 61.0 66 0.0023 26.2 10.7 119 38-170 8-133 (312)
24 1p22_A F-BOX/WD-repeat protein 59.4 76 0.0026 26.4 13.8 72 28-110 213-284 (435)
25 3no0_A DNA gyrase subunit A; D 53.3 84 0.0029 25.0 14.1 131 27-176 114-252 (276)
26 1zvt_A Topoisomerase IV subuni 52.5 84 0.0029 24.8 11.2 131 27-175 31-168 (256)
27 3k26_A Polycomb protein EED; W 47.4 89 0.003 24.6 8.4 124 29-167 232-363 (366)
28 2ovr_B FBW7, F-BOX/WD repeat p 45.9 1.3E+02 0.0043 24.9 13.7 66 84-168 281-346 (445)
29 1q7f_A NHL, brain tumor CG1071 45.6 1E+02 0.0034 23.6 11.9 16 94-109 210-225 (286)
30 2zwa_A Leucine carboxyl methyl 44.9 1E+02 0.0034 28.1 9.0 18 151-168 598-615 (695)
31 2zwa_A Leucine carboxyl methyl 42.5 84 0.0029 28.7 8.1 63 39-110 442-509 (695)
32 1xip_A Nucleoporin NUP159; bet 35.6 1.2E+02 0.004 25.6 7.4 73 72-166 79-151 (388)
33 3p6j_A De novo designed beta-t 35.0 92 0.0032 22.3 5.7 64 30-107 73-139 (142)
34 2ovr_B FBW7, F-BOX/WD repeat p 32.8 2.1E+02 0.0071 23.6 20.9 110 29-168 280-389 (445)
35 4asc_A Kelch repeat and BTB do 32.3 1.1E+02 0.0037 24.2 6.5 17 93-110 141-157 (315)
36 3uc1_A DNA gyrase subunit A; D 32.1 2.1E+02 0.0071 23.4 17.2 132 28-175 145-284 (327)
37 4aez_A CDC20, WD repeat-contai 29.9 2.2E+02 0.0076 23.0 12.4 68 31-111 96-165 (401)
38 1zvu_A Topoisomerase IV subuni 29.5 3.4E+02 0.012 25.1 12.4 125 34-176 510-639 (716)
39 1wp5_A Topoisomerase IV; broke 28.9 2.3E+02 0.0078 23.1 8.0 74 87-168 45-123 (323)
40 3sfz_A APAF-1, apoptotic pepti 28.2 4E+02 0.014 25.5 12.1 28 29-56 1128-1157(1249)
41 1zgk_A Kelch-like ECH-associat 27.3 1.8E+02 0.0063 22.7 7.1 16 152-168 255-270 (308)
42 3ii7_A Kelch-like protein 7; p 26.7 2.2E+02 0.0077 22.0 8.2 16 152-168 193-208 (306)
43 2vpj_A Kelch-like protein 12; 24.6 2.4E+02 0.0083 21.7 8.2 18 92-110 104-121 (301)
44 2ftc_O L27MT, MRP-L27, mitocho 23.2 59 0.002 20.2 2.4 20 32-51 49-68 (69)
45 2z3g_A Blasticidin-S deaminase 20.0 64 0.0022 22.6 2.5 17 154-171 31-47 (130)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.5e-40 Score=289.13 Aligned_cols=211 Identities=30% Similarity=0.542 Sum_probs=182.3
Q ss_pred eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeE
Q psy1607 16 VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHS 95 (241)
Q Consensus 16 ~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s 95 (241)
....|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.+.+|++|+||.+|+
T Consensus 108 ~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~--~~~~p~~v~~~~~~~i~~va~G~~hs 185 (406)
T 4d9s_A 108 DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE--DSLVPQKIQAFEGIRIKMVAAGAEHT 185 (406)
T ss_dssp CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCC--CEEEEEECGGGTTCCEEEEEECSSEE
T ss_pred ccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCC--CcccceEecccCCCcEEEEecCCCeE
Confidence 3457888888888999999999999999999999999999999999999877 67889999988889999999999999
Q ss_pred EEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCccc
Q psy1607 96 AARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLS 175 (241)
Q Consensus 96 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG 175 (241)
++|+++|+||+||.|.+||||.+..... ..|.++... ...+|++|+||.+|+++|+++|+||+||.|.+||||
T Consensus 186 ~alt~~G~v~~wG~n~~GqlG~g~~~~~--~~p~~v~~~-----~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG 258 (406)
T 4d9s_A 186 AAVTEDGDLYGWGWGRYGNLGLGDRTDR--LVPERVTST-----GGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG 258 (406)
T ss_dssp EEEETTSCEEEEECCTTSTTCSSSSCCE--EEEEECCCS-----TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTC
T ss_pred EEEeCCCCEEEeeCCCCCCCCCCCCCCc--CccEEeccc-----CCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCC
Confidence 9999999999999999999999877653 456666544 456899999999999999999999999999999999
Q ss_pred CCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCC----------------------------CCCceeEE
Q psy1607 176 MGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA----------------------------KDSSIVKL 227 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~----------------------------~~~~~~~~ 227 (241)
+++.. ....|.++..+ .+.+|++|+||.+|+++|+.++.. ....+.+|
T Consensus 259 ~g~~~-~~~~p~~v~~~---~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v 334 (406)
T 4d9s_A 259 HGDLE-DHLIPHKLEAL---SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 334 (406)
T ss_dssp SSSCC-CEEEEEECGGG---TTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEE
T ss_pred CCCCc-CccccEEeccc---CCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEE
Confidence 98763 45566666544 345699999999999999988422 12357789
Q ss_pred ecccccceeeee
Q psy1607 228 FAGHWNSGILVQ 239 (241)
Q Consensus 228 ~~~~~~s~~~~~ 239 (241)
.+|.+++.+|+.
T Consensus 335 a~G~~hs~alt~ 346 (406)
T 4d9s_A 335 SCGWRHTLAVTE 346 (406)
T ss_dssp EECSSEEEEEET
T ss_pred EeCCCeEEEEeC
Confidence 999999999875
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=288.52 Aligned_cols=212 Identities=22% Similarity=0.404 Sum_probs=182.6
Q ss_pred eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCC--C
Q psy1607 16 VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGG--W 93 (241)
Q Consensus 16 ~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~ 93 (241)
....|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.+.+|++|+||. .
T Consensus 146 ~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~--~~~~p~~v~~~~~~~v~~ia~G~g~~ 223 (389)
T 3kci_A 146 PCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE--DQLKPKLVEALQGHRVVDIACGSGDA 223 (389)
T ss_dssp CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCC--CEEEEEECGGGTTSCEEEEEECCSSC
T ss_pred cCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc--ccccceEecccCCCeEEEEEEcCCCc
Confidence 3467888988888999999999999999999999999999999999999877 77889999999999999999995 8
Q ss_pred eEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCc
Q psy1607 94 HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQ 173 (241)
Q Consensus 94 ~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gq 173 (241)
|+++|+++|+||+||.|.+||||.+.... ...|.+++.+ .+.+|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 224 ~t~~l~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~~-----~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~Gq 296 (389)
T 3kci_A 224 QTLCLTDDDTVWSWGDGDYGKLGRGGSDG--CKVPMKIDSL-----TGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHR 296 (389)
T ss_dssp EEEEEETTTEEEEEECCGGGTTSSSSCCC--EEEEEECGGG-----TTSCEEEEEEETTEEEEEETTSCEEEEECCGGGT
T ss_pred EEEEEccCCEEEEEeCCCCCCCCCCCCCC--ccccEEeccc-----CCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC
Confidence 99999999999999999999999987654 3567777655 4568999999999999999999999999999999
Q ss_pred ccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCC----------------------------CCCcee
Q psy1607 174 LSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA----------------------------KDSSIV 225 (241)
Q Consensus 174 lG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~----------------------------~~~~~~ 225 (241)
||++.. .....|+++..+ .+.+|++|+||.+|+++|+.++.. ....+.
T Consensus 297 LG~g~~-~~~~~P~~v~~l---~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~ 372 (389)
T 3kci_A 297 LGHGSD-DHVRRPRQVQGL---QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVN 372 (389)
T ss_dssp TCSSSC-CCEEEEEECGGG---TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCC
T ss_pred CCCCCC-ccccCCeEeccC---CCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEE
Confidence 999876 445667766644 345699999999999999998321 133577
Q ss_pred EEecccccceeeeec
Q psy1607 226 KLFAGHWNSGILVQS 240 (241)
Q Consensus 226 ~~~~~~~~s~~~~~~ 240 (241)
++.+|.++|.+|+.+
T Consensus 373 ~va~G~~ht~al~~~ 387 (389)
T 3kci_A 373 RVACGSAHTLAWSTS 387 (389)
T ss_dssp EEEEETTEEEEECC-
T ss_pred EEEecCCcEEEEecC
Confidence 899999999999764
No 3
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.3e-39 Score=286.25 Aligned_cols=210 Identities=28% Similarity=0.477 Sum_probs=180.5
Q ss_pred EecCeeeeccCCccEEEEecCCCEEEEEECCC-cEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeE
Q psy1607 17 FHMPSRMDHFLDLVVTDIACGFDHCLALTQEG-IVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHS 95 (241)
Q Consensus 17 ~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g-~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s 95 (241)
...|.+++.+.+.+|++|+||..|+++|++++ +||+||.|.+||||.+... ....|.++..+.+.+|++|+||..|+
T Consensus 56 ~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~--~~~~p~~v~~l~~~~i~~ia~G~~h~ 133 (406)
T 4d9s_A 56 RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS--DLFTPLPIKALHGIRIKQIACGDSHC 133 (406)
T ss_dssp EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCC--CEEEEEECGGGTTCCEEEEEECSSEE
T ss_pred CcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCC--ccccceEecccCCCCEEEEEEChhhe
Confidence 45788888888889999999999999999886 9999999999999998876 77889999988989999999999999
Q ss_pred EEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCccc
Q psy1607 96 AARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLS 175 (241)
Q Consensus 96 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG 175 (241)
++|+++|+||+||.|.+||||.+.... ...|.++..+ .+.+|++|+||.+|+++|+++|+||+||.|.+||||
T Consensus 134 ~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~~-----~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG 206 (406)
T 4d9s_A 134 LAVTMEGEVQSWGRNQNGQLGLGDTED--SLVPQKIQAF-----EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLG 206 (406)
T ss_dssp EEEETTSCEEEEECCTTSTTCSSSCCC--EEEEEECGGG-----TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred EEEcCCCcEEEeCCCCCccCCCCCCCC--cccceEeccc-----CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCC
Confidence 999999999999999999999987665 3467777655 456899999999999999999999999999999999
Q ss_pred CCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCC----------------------------CCCceeEE
Q psy1607 176 MGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA----------------------------KDSSIVKL 227 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~----------------------------~~~~~~~~ 227 (241)
++...+ ...|.++..+ .+.+|++|+||.+|+++|+.++.. ....+.+|
T Consensus 207 ~g~~~~-~~~p~~v~~~---~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i 282 (406)
T 4d9s_A 207 LGDRTD-RLVPERVTST---GGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 282 (406)
T ss_dssp SSSSCC-EEEEEECCCS---TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred CCCCCC-cCccEEeccc---CCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEE
Confidence 987643 4456665433 345699999999999999988422 12347889
Q ss_pred ecccccceeeee
Q psy1607 228 FAGHWNSGILVQ 239 (241)
Q Consensus 228 ~~~~~~s~~~~~ 239 (241)
.+|..++.+|+.
T Consensus 283 ~~G~~hs~alt~ 294 (406)
T 4d9s_A 283 SGGWRHTMALTS 294 (406)
T ss_dssp EECSSEEEEEET
T ss_pred EecCCEEEEEcC
Confidence 999999999875
No 4
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=282.89 Aligned_cols=188 Identities=28% Similarity=0.427 Sum_probs=165.4
Q ss_pred eEecCeeeeccCCccEEEEecCC--CEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCC
Q psy1607 16 VFHMPSRMDHFLDLVVTDIACGF--DHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW 93 (241)
Q Consensus 16 ~~~~p~~i~~~~~~~i~~i~~G~--~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~ 93 (241)
....|++++.+.+.+|++|+||. .|+++|+++|+||+||.|.+||||.+... ....|.++..+.+.+|++|+||.+
T Consensus 198 ~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~--~~~~p~~v~~~~~~~v~~v~~G~~ 275 (389)
T 3kci_A 198 DQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSD--GCKVPMKIDSLTGLGVVKVECGSQ 275 (389)
T ss_dssp CEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCC--CEEEEEECGGGTTSCEEEEEEETT
T ss_pred ccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCC--CccccEEecccCCCcEEEEeCCCC
Confidence 34578889889999999999995 99999999999999999999999999876 778899999888889999999999
Q ss_pred eEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCc
Q psy1607 94 HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQ 173 (241)
Q Consensus 94 ~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gq 173 (241)
|+++|+++|+||+||.|.++|||.+.... ...|+++..+ .+.+|++|+||.+|+++++++|+||+||.|.+||
T Consensus 276 hs~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~P~~v~~l-----~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 276 FSVALTKSGAVYTWGKGDYHRLGHGSDDH--VRRPRQVQGL-----QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGG-----TTCCEEEEEECSSEEEEEETTCCEEEEECCTTST
T ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCcc--ccCCeEeccC-----CCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCc
Confidence 99999999999999999999999987654 4567777655 4568999999999999999999999999999999
Q ss_pred ccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecC
Q psy1607 174 LSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVP 216 (241)
Q Consensus 174 lG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~ 216 (241)
||.+... ....|+.+..+ .+.+|++|+||.+||++|+.+
T Consensus 349 LG~g~~~-~~~~P~~v~~~---~~~~v~~va~G~~ht~al~~~ 387 (389)
T 3kci_A 349 LGDGTTN-AIQRPRLVAAL---QGKKVNRVACGSAHTLAWSTS 387 (389)
T ss_dssp TCSSSCC-CEEEEEECGGG---TTSCCCEEEEETTEEEEECC-
T ss_pred CCCCCCC-CccCcEEeccc---CCCCEEEEEecCCcEEEEecC
Confidence 9998763 45667776544 345699999999999999875
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.1e-38 Score=280.70 Aligned_cols=223 Identities=20% Similarity=0.333 Sum_probs=178.3
Q ss_pred CCCCccccCcee---------------EecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCC
Q psy1607 5 LASGPLKMLSQV---------------FHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD 69 (241)
Q Consensus 5 ~~~g~l~~~g~~---------------~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 69 (241)
-.+|+++.||.. ...|.++ +...+|++|+||.+|+++|+++|+||+||.|.+||||.+.....
T Consensus 127 t~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~ 204 (413)
T 1a12_A 127 TDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFA 204 (413)
T ss_dssp ETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTS
T ss_pred cCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccc
Confidence 356777777752 1235555 56678999999999999999999999999999999998754211
Q ss_pred ---------CCccCeEeeec-----CCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccc
Q psy1607 70 ---------ANMEPREIRAL-----SGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSE 135 (241)
Q Consensus 70 ---------~~~~p~~v~~~-----~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~ 135 (241)
....|..+... ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+..+.
T Consensus 205 ~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~--~~~P~~v~~l~ 282 (413)
T 1a12_A 205 NRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTES--CFIPQNLTSFK 282 (413)
T ss_dssp SSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSC--EEEEEECGGGC
T ss_pred cccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCc--ccccEEchhcc
Confidence 12456555543 446899999999999999999999999999999999987655 35677776541
Q ss_pred cCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEec
Q psy1607 136 DFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSV 215 (241)
Q Consensus 136 ~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~ 215 (241)
. ...+|++|+||.+|+++|+++|+||+||.|.+||||++........|++++.+. +|++|+||.+|+++|+.
T Consensus 283 ~---~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~-----~v~~v~~G~~hs~alt~ 354 (413)
T 1a12_A 283 N---STKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-----AVSSVACGASVGYAVTK 354 (413)
T ss_dssp C---TTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS-----SEEEEEECSSEEEEEET
T ss_pred C---CCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC-----ceeEEEECcceEEEEeC
Confidence 1 225699999999999999999999999999999999986556677787776543 59999999999999999
Q ss_pred CCCC------------------------------CCCceeEEecccccceeeee
Q psy1607 216 PEHA------------------------------KDSSIVKLFAGHWNSGILVQ 239 (241)
Q Consensus 216 ~~~~------------------------------~~~~~~~~~~~~~~s~~~~~ 239 (241)
++.. ....+..+.+|.++|.+|+.
T Consensus 355 ~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~ 408 (413)
T 1a12_A 355 DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408 (413)
T ss_dssp TSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEE
T ss_pred CCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEe
Confidence 8321 11347789999999999875
No 6
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2e-38 Score=279.81 Aligned_cols=224 Identities=23% Similarity=0.230 Sum_probs=184.6
Q ss_pred CCCCccccCce------------eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCC-----
Q psy1607 5 LASGPLKMLSQ------------VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSG----- 67 (241)
Q Consensus 5 ~~~g~l~~~g~------------~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~----- 67 (241)
-.+|+++.||. ....|.++..+...+|++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 143 ~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~ 222 (423)
T 3mvd_K 143 LEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGE 222 (423)
T ss_dssp ETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSC
T ss_pred eCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccc
Confidence 35666666664 1123556667788899999999999999999999999999999999997643
Q ss_pred ----CCCCccCeEeeecCCCCeEEEEcCCCeEEEE-EcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCC
Q psy1607 68 ----TDANMEPREIRALSGLGVVQISAGGWHSAAR-TQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNI 142 (241)
Q Consensus 68 ----~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~l-t~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~ 142 (241)
......|.++......+|++|+||.+|++++ +++|+||+||.|.++|||.+.........|.++.+ .
T Consensus 223 ~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~--------~ 294 (423)
T 3mvd_K 223 GRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL--------K 294 (423)
T ss_dssp STTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECC--------C
T ss_pred cccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCC--------C
Confidence 1245688888887888999999999999999 59999999999999999997665555556666552 4
Q ss_pred cEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCC---
Q psy1607 143 KVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA--- 219 (241)
Q Consensus 143 ~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~--- 219 (241)
+|++|+||.+|+++|+++|+||+||.|.+||||++...+....|.+++.+.. +|++|+||.+|+++|+.++..
T Consensus 295 ~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~----~v~~ia~G~~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE----KIVSVGCGEVCSYAVTIDGKLYSW 370 (423)
T ss_dssp SEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS----CEEEEEEETTEEEEEETTSCEEEE
T ss_pred CeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC----CEEEEEcCCCeEEEEcCCCCEEEE
Confidence 7999999999999999999999999999999999987666677777765543 699999999999999988311
Q ss_pred ---------------------------CCCceeEEecccccceeeeec
Q psy1607 220 ---------------------------KDSSIVKLFAGHWNSGILVQS 240 (241)
Q Consensus 220 ---------------------------~~~~~~~~~~~~~~s~~~~~~ 240 (241)
....+.++.+|.+++.+|+..
T Consensus 371 G~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~ 418 (423)
T 3mvd_K 371 GSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKA 418 (423)
T ss_dssp ECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcc
Confidence 123478899999999999864
No 7
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-38 Score=282.57 Aligned_cols=222 Identities=27% Similarity=0.421 Sum_probs=175.5
Q ss_pred CCCCccccCce----------------eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCC
Q psy1607 5 LASGPLKMLSQ----------------VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT 68 (241)
Q Consensus 5 ~~~g~l~~~g~----------------~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~ 68 (241)
-.+|+++.||. ....|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 164 t~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~ 243 (473)
T 3of7_A 164 FSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMER 243 (473)
T ss_dssp ETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGG
T ss_pred eCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccc
Confidence 45677777764 34578888888888999999999999999999999999999999999986541
Q ss_pred --CCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCC--ceeeCCccccccccCCCCCCcE
Q psy1607 69 --DANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLD--LVVHDPHPMSWSEDFDSQNIKV 144 (241)
Q Consensus 69 --~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~--~~~~~p~~v~~~~~~~~~~~~i 144 (241)
.....|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.... .....|.++..+ .+.+|
T Consensus 244 ~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~-----~~~~i 315 (473)
T 3of7_A 244 FRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP-----DNVVI 315 (473)
T ss_dssp GTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCC-----TTCCE
T ss_pred ccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccccc-----CCccE
Confidence 12445666542 5799999999999999999999999999999999887543 234567777755 45689
Q ss_pred EEEEccCCceEEEecCCcEEEEecCCCCcccCCCCC-----------Cc--eecceEecccccccCcCeeEEeccCCeeE
Q psy1607 145 VDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGV-----------SQ--VSVMTRLSVPEHVKNCPIVKLFAEHWNSA 211 (241)
Q Consensus 145 ~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~-----------~~--~~~~~~~~~~~~~~~~~i~~vacG~~~s~ 211 (241)
++|+||.+|+++|+++|+||+||.|.+||||.+... .. ...|..+. ... +|++|+||.+|++
T Consensus 316 ~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~---~~~--~v~~Ia~G~~hs~ 390 (473)
T 3of7_A 316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN---NVP--KFKSVAAGSHHSV 390 (473)
T ss_dssp EEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC---SSC--CEEEEEECSSEEE
T ss_pred EEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC---CCC--ceEEEEeCCCeEE
Confidence 999999999999999999999999999999987531 11 12233222 111 6999999999999
Q ss_pred EEecCCCC-------------------------------CCCceeEEecccccceeeee
Q psy1607 212 RLSVPEHA-------------------------------KDSSIVKLFAGHWNSGILVQ 239 (241)
Q Consensus 212 ~lt~~~~~-------------------------------~~~~~~~~~~~~~~s~~~~~ 239 (241)
+|+.++.. ....+..+.+|.++|.++..
T Consensus 391 al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 391 AVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp EEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred EEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 99988311 11236778999999998875
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=3.3e-38 Score=277.78 Aligned_cols=188 Identities=20% Similarity=0.296 Sum_probs=161.3
Q ss_pred ecCeeeecc-----CCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCC--CCeEEEEc
Q psy1607 18 HMPSRMDHF-----LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSG--LGVVQISA 90 (241)
Q Consensus 18 ~~p~~i~~~-----~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~--~~i~~I~~ 90 (241)
..|+.+..+ ...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|..+..+.+ .+|++|+|
T Consensus 216 ~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~--~~~~P~~v~~l~~~~~~v~~ia~ 293 (413)
T 1a12_A 216 LVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE--SCFIPQNLTSFKNSTKSWVGFSG 293 (413)
T ss_dssp HSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCS--CEEEEEECGGGCCTTCCEEEEEE
T ss_pred ccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCC--cccccEEchhccCCCceEEEEec
Confidence 456666654 45789999999999999999999999999999999998876 6788999888876 67999999
Q ss_pred CCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCC
Q psy1607 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNE 170 (241)
Q Consensus 91 G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~ 170 (241)
|.+|+++|+++|+||+||.|.+||||.+..... ...|+++..+ .+|++|+||.+|+++|+++|+||+||.|.
T Consensus 294 G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~-~~~P~~v~~l-------~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 294 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE-KSIPTLISRL-------PAVSSVACGASVGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCC-EEEEEECCSS-------SSEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred ccceEEEEeCCCCEEEeeCCCCCccCCCCCCcc-ccCCEEeccc-------CceeEEEECcceEEEEeCCCCEEEecCCC
Confidence 999999999999999999999999998854432 4567777655 38999999999999999999999999999
Q ss_pred CCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607 171 YNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE 217 (241)
Q Consensus 171 ~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~ 217 (241)
+||||.+.. .....|.++... .+.+.+|++|+||.+|+++|+.++
T Consensus 366 ~gqLG~g~~-~~~~~P~~v~~~-~~~~~~v~~v~~G~~ht~~l~~~g 410 (413)
T 1a12_A 366 NYQLGTGQD-EDAWSPVEMMGK-QLENRVVLSVSSGGQHTVLLVKDK 410 (413)
T ss_dssp TSTTCSSSC-SCEEEEEECCST-TTTTEEEEEEEECSSEEEEEEEEC
T ss_pred CCCCCCCCC-CCcccCeEcccc-ccCCCeEEEEeeCCCcEEEEEecC
Confidence 999999886 446667776632 234567999999999999999875
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=278.58 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=172.9
Q ss_pred ecCeeeec--c----CCccEEEEecCCCEEEEEECCCcEEEEeC--CCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEE
Q psy1607 18 HMPSRMDH--F----LDLVVTDIACGFDHCLALTQEGIVFSWGN--GSRGQLGYPSSGTDANMEPREIRALSGLGVVQIS 89 (241)
Q Consensus 18 ~~p~~i~~--~----~~~~i~~i~~G~~h~~~lt~~g~v~~~G~--n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~ 89 (241)
..|.+++. + .+.+|++|+||.+|+++|+++|+||+||. +.+||||...........|.++..+.+.+|++|+
T Consensus 131 ~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va 210 (473)
T 3of7_A 131 STPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLA 210 (473)
T ss_dssp HSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEE
T ss_pred cCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEE
Confidence 46777774 4 46899999999999999999999999998 6799999866544466788888888888999999
Q ss_pred cCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCce--eeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEe
Q psy1607 90 AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLV--VHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCG 167 (241)
Q Consensus 90 ~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~--~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG 167 (241)
||.+|+++|+++|+||+||.|.+||||.+...... ...|.++.+ .+|++|+||.+|+++|+++|+||+||
T Consensus 211 ~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~--------~~v~~Ia~G~~hs~alt~~G~v~~wG 282 (473)
T 3of7_A 211 PGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL--------RHVKYIASGENHCFALTKDNKLVSWG 282 (473)
T ss_dssp ECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC--------CSEEEEEECSSEEEEEETTSCEEEEE
T ss_pred ecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC--------cceEEEecCCCeEEEEecCCCEEEeC
Confidence 99999999999999999999999999987654321 234555543 48999999999999999999999999
Q ss_pred cCCCCcccCCCCC---CceecceEecccccccCcCeeEEeccCCeeEEEecCCCC-----------C-------------
Q psy1607 168 WNEYNQLSMGCGV---SQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA-----------K------------- 220 (241)
Q Consensus 168 ~n~~gqlG~~~~~---~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~-----------~------------- 220 (241)
.|.+||||.+... .....|+++..+ .+.+|++|+||.+|+++|+.++.. .
T Consensus 283 ~n~~GqlG~~~~~~~~~~~~~P~~v~~~---~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 359 (473)
T 3of7_A 283 LNQFGQCGVSEDVEDGALVTKPKRLALP---DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKD 359 (473)
T ss_dssp ECTTSTTCCCSCCCTTCEEEEEEECCCC---TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEEC
T ss_pred CCCCCCcCCCCcccCCceeecccccccc---CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccc
Confidence 9999999998754 234556666544 345699999999999999988422 0
Q ss_pred ----------------CCceeEEecccccceeeee
Q psy1607 221 ----------------DSSIVKLFAGHWNSGILVQ 239 (241)
Q Consensus 221 ----------------~~~~~~~~~~~~~s~~~~~ 239 (241)
...+..|.+|.+++.+|+.
T Consensus 360 ~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~ 394 (473)
T 3of7_A 360 VHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQ 394 (473)
T ss_dssp TTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEET
T ss_pred cCCceeeeccCcccCCCCceEEEEeCCCeEEEEeC
Confidence 0157789999999999875
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=5.2e-37 Score=270.83 Aligned_cols=190 Identities=18% Similarity=0.183 Sum_probs=159.9
Q ss_pred EecCeeeeccCCccEEEEecCCCEEEEE-ECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeE
Q psy1607 17 FHMPSRMDHFLDLVVTDIACGFDHCLAL-TQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHS 95 (241)
Q Consensus 17 ~~~p~~i~~~~~~~i~~i~~G~~h~~~l-t~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s 95 (241)
...|.++..+...+|++|+||.+|++++ +++|+||+||.|.++|||.+.........|.++. ..+|++|+||.+|+
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht 306 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHT 306 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEE
T ss_pred ccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeE
Confidence 3478888888888999999999999999 6999999999999999999766534455565554 45799999999999
Q ss_pred EEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCccc
Q psy1607 96 AARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLS 175 (241)
Q Consensus 96 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG 175 (241)
++|+++|+||+||.|.+||||.+..... ...|.++..+ .. +|++|+||.+|+++|+++|+||+||.|.+||||
T Consensus 307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~-~~~p~~v~~l-----~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG 379 (423)
T 3mvd_K 307 VILTTDLKCSVVGRPEYGRLGLGDVKDV-VEKPTIVKKL-----TE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLG 379 (423)
T ss_dssp EEEETTCCEEEEECCGGGTTCSSSCCSC-EEEEEECTTC-----CS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSS
T ss_pred EEEeCCCcEEEEECCCCCCCCCCCcccc-ccCceEeccC-----CC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCC
Confidence 9999999999999999999999876543 3467777655 22 899999999999999999999999999999999
Q ss_pred CCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCC
Q psy1607 176 MGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEH 218 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~ 218 (241)
+++.. ....|+++.. ....+.+|++|+||.+|+++|+.+++
T Consensus 380 ~g~~~-~~~~P~~v~~-~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 380 VGDGD-DELEPIVVVS-KNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp SSSSC-CEEEEEECCS-TTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CCCCC-CcccCeEEeC-cccCCCEEEEEEECCCcEEEEEcccc
Confidence 99874 3556777663 23455679999999999999999874
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.3e-32 Score=229.03 Aligned_cols=190 Identities=29% Similarity=0.366 Sum_probs=129.4
Q ss_pred CCccccCceeEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeE
Q psy1607 7 SGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVV 86 (241)
Q Consensus 7 ~g~l~~~g~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~ 86 (241)
+|+++.||.+..-..-++.....+|++|+||.+|+++|+ +|+||+||.|.+||||.+.. + ..+|+
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~----------~----~~~v~ 105 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAE----------A----RSGVD 105 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGG----------G----SSSEE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcc----------c----CCCeE
Confidence 455555554333222222233346777777777777775 77777777777777775321 1 13577
Q ss_pred EEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCcee-----------------------------eCCccccccccC
Q psy1607 87 QISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVV-----------------------------HDPHPMSWSEDF 137 (241)
Q Consensus 87 ~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~-----------------------------~~p~~v~~~~~~ 137 (241)
+|+||.+|+++|+ +|+||+||.|.++||+........+ ..|..
T Consensus 106 ~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~~G~v~~wG~n~~gqlg~p~~------- 177 (282)
T 3qhy_B 106 AIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAE------- 177 (282)
T ss_dssp EEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECCTTSTTSCCGG-------
T ss_pred EEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEECCEEEEecCCCCCCCCCcee-------
Confidence 7777777777777 7777777777777776543211000 01222
Q ss_pred CCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE 217 (241)
Q Consensus 138 ~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~ 217 (241)
...+|++|+||.+|+++| ++|+||+||.|.+||||.... . ..+|++|+||.+|+++|+ ++
T Consensus 178 --~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~--------------~--~~~v~~i~~G~~h~~al~-~g 237 (282)
T 3qhy_B 178 --AQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE--------------A--LSGVSAIASGEWYSLALK-NG 237 (282)
T ss_dssp --GGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG--------------G--GSSCCEEEECSSCEEEEE-TT
T ss_pred --cCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc--------------c--CCCceEEEcCCCEEEEEE-CC
Confidence 135799999999999999 899999999999999985321 0 124899999999999999 74
Q ss_pred CC------------CCCceeEEecccccceeeee
Q psy1607 218 HA------------KDSSIVKLFAGHWNSGILVQ 239 (241)
Q Consensus 218 ~~------------~~~~~~~~~~~~~~s~~~~~ 239 (241)
.. ....+..|.+|..++.+|+.
T Consensus 238 ~v~~wG~n~~gq~~v~~~v~~iaaG~~h~~al~~ 271 (282)
T 3qhy_B 238 KVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG 271 (282)
T ss_dssp EEEEESTTCCCCGGGSSCEEEEEECSSCEEEEEC
T ss_pred EEEEecCCCCccccCCCCcEEEEECcCeEEEEec
Confidence 22 25568889999999999975
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=5.6e-32 Score=226.70 Aligned_cols=171 Identities=32% Similarity=0.420 Sum_probs=126.6
Q ss_pred CccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEE
Q psy1607 28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAW 107 (241)
Q Consensus 28 ~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~ 107 (241)
..+|++|+||..|+++|+ +|+||+||.|.+||||.+... ..+|++|+||.+|+++|+ +|+||+|
T Consensus 23 ~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~--------------~~~i~~ia~G~~hs~~l~-~G~v~~w 86 (282)
T 3qhy_B 23 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAAT--------------QSGVDAIAAGNYHSLALK-DGEVIAW 86 (282)
T ss_dssp SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGG--------------GSCCCEEEECSSEEEEEE-TTEEEEE
T ss_pred cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccC--------------CCCEEEEEeCCCEEEEEE-CCEEEEe
Confidence 347999999999999998 999999999999999998764 126899999999999996 9999999
Q ss_pred eCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecce
Q psy1607 108 GWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMT 187 (241)
Q Consensus 108 G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~ 187 (241)
|.|.+||||. |..+. .+|++|+||.+|+++|+ +|+||+||.|.+||||..... .....
T Consensus 87 G~n~~Gqlg~----------P~~~~---------~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~--~~~i~ 144 (282)
T 3qhy_B 87 GGNEDGQTTV----------PAEAR---------SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEA--QSGVT 144 (282)
T ss_dssp ECCTTSTTCC----------CGGGS---------SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGG--GSSEE
T ss_pred eCCCCCCCCC----------CcccC---------CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccC--CCCeE
Confidence 9999999995 44442 25788888888888888 888888888888888754211 00000
Q ss_pred Ee--------------------------cccccccCcCeeEEeccCCeeEEEecCCCC----------------CCCcee
Q psy1607 188 RL--------------------------SVPEHVKNCPIVKLFAEHWNSARLSVPEHA----------------KDSSIV 225 (241)
Q Consensus 188 ~~--------------------------~~~~~~~~~~i~~vacG~~~s~~lt~~~~~----------------~~~~~~ 225 (241)
.+ ..+. ....+|++|+||.+|+++| .++.. ....+.
T Consensus 145 ~i~~G~~~~~~l~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~ 222 (282)
T 3qhy_B 145 ALDGGVYTALAVKNGGVIAWGDNYFGQTTVPA-EAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVS 222 (282)
T ss_dssp EEEECSSEEEEEETTEEEEEECCTTSTTSCCG-GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCC
T ss_pred EEEcccCEEEEEECCEEEEecCCCCCCCCCce-ecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCce
Confidence 00 0011 1123588888888888888 55311 134566
Q ss_pred EEecccccceeee
Q psy1607 226 KLFAGHWNSGILV 238 (241)
Q Consensus 226 ~~~~~~~~s~~~~ 238 (241)
+|.+|..++.+|+
T Consensus 223 ~i~~G~~h~~al~ 235 (282)
T 3qhy_B 223 AIASGEWYSLALK 235 (282)
T ss_dssp EEEECSSCEEEEE
T ss_pred EEEcCCCEEEEEE
Confidence 7888888887776
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=97.12 E-value=0.0013 Score=52.91 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=60.5
Q ss_pred ccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEe
Q psy1607 29 LVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWG 108 (241)
Q Consensus 29 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G 108 (241)
..|.+|+--..|..++--+++++.+|+++.||+-.+... -++.++.+|..+++-+..-+.+..||
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta---------------gPfla~~AG~~fTVTVn~~nyv~FWG 373 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA---------------GPYIQLAAGHNFTVTVNTLNQVMFWG 373 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG---------------CCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc---------------chHHhHhccCCeEEEEeceeeEEEec
Confidence 467788888999999999999999999999998776543 36889999999999999999999999
Q ss_pred CCCCCcc
Q psy1607 109 WNNGGQV 115 (241)
Q Consensus 109 ~n~~gql 115 (241)
+.-...|
T Consensus 374 DSPDNSL 380 (400)
T 4gbf_A 374 DSPDNSL 380 (400)
T ss_dssp CCTTSTT
T ss_pred CCCCcce
Confidence 8544333
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.95 E-value=0.0019 Score=51.94 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=62.0
Q ss_pred CCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCc
Q psy1607 83 LGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNS 162 (241)
Q Consensus 83 ~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~ 162 (241)
.++-.|+.-+.|.+++--+++++.+|+|++||+-+.... .++.++.+|.++++-+...+.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------------gPfla~~AG~~fTVTVn~~ny 368 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------------GPYIQLAAGHNFTVTVNTLNQ 368 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------------CCEEEEEECSSEEEEEETTCC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------------chHHhHhccCCeEEEEeceee
Confidence 468889999999999999999999999999998653222 368999999999999999999
Q ss_pred EEEEecCCCCccc
Q psy1607 163 LWGCGWNEYNQLS 175 (241)
Q Consensus 163 v~~wG~n~~gqlG 175 (241)
+-.||+.....|-
T Consensus 369 v~FWGDSPDNSLL 381 (400)
T 4gbf_A 369 VMFWGDSPDNSLL 381 (400)
T ss_dssp EEEEECCTTSTTC
T ss_pred EEEecCCCCccee
Confidence 9999998766664
No 15
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=83.17 E-value=18 Score=29.83 Aligned_cols=133 Identities=11% Similarity=-0.027 Sum_probs=74.3
Q ss_pred CccEEE--EecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcC-----CCeEEEEEc
Q psy1607 28 DLVVTD--IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG-----GWHSAARTQ 100 (241)
Q Consensus 28 ~~~i~~--i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G-----~~~s~~lt~ 100 (241)
+..+.. ++...++.+++|+.|++|..-...-...+..... .+....+...++++|+.+..- ..+.+++|+
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G---~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~ 114 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG---QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTR 114 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC---EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEET
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC---cChhhccCCCCCCEEEEEEEecccCCCceEEEEeC
Confidence 344444 5567889999999999999887655444433222 111111222245677765433 235788999
Q ss_pred CCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEE--EEccCCceEEEecCCcEEEEecCCCCccc
Q psy1607 101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVD--VACGSRHTLALCDDNSLWGCGWNEYNQLS 175 (241)
Q Consensus 101 ~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~--i~~G~~h~~~lt~~g~v~~wG~n~~gqlG 175 (241)
+|.+--.-...+..... .... ..+.+. .+..++. +..+..+.+++|++|+++-+-.++--..|
T Consensus 115 ~G~iKrt~l~e~~~~~r-~~G~------~ai~l~-----e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~g 179 (323)
T 1wp5_A 115 NGMVKKTELKHYKAQRY-SKPL------TGINLK-----NDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVG 179 (323)
T ss_dssp TSEEEEEEGGGGCCSCC-SSCE------ECSCCC-----TTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CCeEEEeEHHHhhhccc-cCce------EEEEeC-----CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence 99888765443322110 0000 011221 1234443 33467789999999999887665443333
No 16
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=83.03 E-value=18 Score=29.64 Aligned_cols=133 Identities=10% Similarity=-0.010 Sum_probs=74.3
Q ss_pred CccEEE--EecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcC-----CCeEEEEEc
Q psy1607 28 DLVVTD--IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG-----GWHSAARTQ 100 (241)
Q Consensus 28 ~~~i~~--i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G-----~~~s~~lt~ 100 (241)
+..+.. +..+.++.+++|+.|++|..-...-...+..... ......+...++.+|+.+... ..+.+++|+
T Consensus 46 ~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G---~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~ 122 (312)
T 1suu_A 46 GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG---QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA 122 (312)
T ss_dssp TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEET
T ss_pred CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC---cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeC
Confidence 344544 4556788999999999999886554433332211 111112222356677777654 456789999
Q ss_pred CCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEE--ccCCceEEEecCCcEEEEecCCCCcccC
Q psy1607 101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA--CGSRHTLALCDDNSLWGCGWNEYNQLSM 176 (241)
Q Consensus 101 ~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~--~G~~h~~~lt~~g~v~~wG~n~~gqlG~ 176 (241)
+|.++-.-...+.... .... ..+.+. .+..++.+. .+..+.+++|++|.++-+-..+.-..|.
T Consensus 123 ~G~~kr~~l~~~~~~r--~~G~------~~i~L~-----~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR 187 (312)
T 1suu_A 123 SGKIARFESTDFKAVK--SRGV------IVIKLN-----DKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNR 187 (312)
T ss_dssp TSEEEEEEGGGGCC------CE------ECBCCC-----TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CCeEEEEEHHHhhccC--CCcE------EEEecC-----CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCC
Confidence 9999987654431110 0000 011222 234555543 3566789999999988876655444333
No 17
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=81.94 E-value=18 Score=29.02 Aligned_cols=124 Identities=12% Similarity=0.016 Sum_probs=72.2
Q ss_pred CCccEEEEecC--CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEc---CCCeEEEEEcC
Q psy1607 27 LDLVVTDIACG--FDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA---GGWHSAARTQD 101 (241)
Q Consensus 27 ~~~~i~~i~~G--~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~---G~~~s~~lt~~ 101 (241)
.+..+..+..+ .++.+++|++|++|.--........ .. . + ...+++|+.+.+ .....+++|++
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~---~~--~------l-l~~~e~i~~v~~~~~~~~~~v~~T~~ 89 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS---KV--S------L-KSREEKIVGAFIREKFGNRLLLATKK 89 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE---EC--C------C-SSTTCCEEEEEEGGGSCSEEEEEETT
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc---cc--c------c-CCCCCEEEEEECCcCCCCEEEEEeCC
Confidence 45556665544 4668899999999976543221110 00 0 2 225678888865 23578899999
Q ss_pred CCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEE--ccCCceEEEecCCcEEEEecCCCCcccC
Q psy1607 102 GFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA--CGSRHTLALCDDNSLWGCGWNEYNQLSM 176 (241)
Q Consensus 102 g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~--~G~~h~~~lt~~g~v~~wG~n~~gqlG~ 176 (241)
|.+.-.-...+.+- ... ...+.+. .+..++.+. .+..+.+++|++|++|-+-..+.-..|.
T Consensus 90 G~iKr~~l~~~~~~----~~G-----~~~i~lk-----egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR 152 (276)
T 3no0_A 90 GYVKKIPLAEFEYK----AQG-----MPIIKLT-----EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTP 152 (276)
T ss_dssp SEEEEEEGGGTTTC----STT-----EECSCCC-----TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CEEEEEEHHHhhhh----cCC-----eEEEecC-----CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCC
Confidence 99987765444210 000 1112222 233555543 3556789999999999986655444443
No 18
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.93 E-value=22 Score=29.35 Aligned_cols=126 Identities=11% Similarity=0.034 Sum_probs=72.7
Q ss_pred CccEEE--EecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCC-----CeEEEEEc
Q psy1607 28 DLVVTD--IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGG-----WHSAARTQ 100 (241)
Q Consensus 28 ~~~i~~--i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~-----~~s~~lt~ 100 (241)
+..+.. .+...++.+++|+.|++|..-...-...+..... .+....+....+++|+.+.... ...+++|+
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G---~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~ 117 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG---QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATR 117 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC---EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEET
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC---EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcC
Confidence 334544 4456788888999999998876544433322211 1111122223567888876654 46789999
Q ss_pred CCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEE--EEccCCceEEEecCCcEEEEecC
Q psy1607 101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVD--VACGSRHTLALCDDNSLWGCGWN 169 (241)
Q Consensus 101 ~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~--i~~G~~h~~~lt~~g~v~~wG~n 169 (241)
+|.+.-.-...+.... ... ...+.+. .+..++. ++.+..+.+++|++|++|-+-..
T Consensus 118 ~G~iKr~~l~~~~~~~---r~G-----~~~i~lk-----e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 118 NGLVKKSKLTDFDSNR---SGG-----IVAVNLR-----DNDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp TSEEEEEEGGGGCCCC---SSC-----EESCBCC-----TTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred CCEEEEeEHHHhhccc---cCc-----eEEEEEC-----CCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 9988876544332110 000 0112221 1234443 34567789999999999988776
No 19
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=75.41 E-value=36 Score=28.68 Aligned_cols=128 Identities=15% Similarity=0.056 Sum_probs=72.3
Q ss_pred CCccEEE--EecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcC-----CCeEEEEE
Q psy1607 27 LDLVVTD--IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG-----GWHSAART 99 (241)
Q Consensus 27 ~~~~i~~--i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G-----~~~s~~lt 99 (241)
.+..+.. ++.+.++.+++|+.|++|.+-...-...|..... ......+....+.+|+.+..- ..+.+++|
T Consensus 44 e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G---~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T 120 (370)
T 3l6v_A 44 EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARG---RPIINWIPLESGERVQAVLPVREYADNRYVFMAT 120 (370)
T ss_dssp CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC---EEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEE
T ss_pred CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCC---cCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEe
Confidence 3445544 4456677889999999998886554444433221 111111222256778877653 34678999
Q ss_pred cCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEE--EEccCCceEEEecCCcEEEEecCC
Q psy1607 100 QDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVD--VACGSRHTLALCDDNSLWGCGWNE 170 (241)
Q Consensus 100 ~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~--i~~G~~h~~~lt~~g~v~~wG~n~ 170 (241)
++|.+--.-...+.... ... . ..+.+. .+..++. +..+..+.+++|++|++.-+-..+
T Consensus 121 ~~G~vKrt~l~e~~~~~---~~G--~---~ai~L~-----~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 121 RNGTVKKTPLSEFAFRL---ARG--K---IAINLD-----EGDALVGVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp TTSEEEEEEGGGGCSCC---TTC--E---ESSCCC-----TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred CCCeEEEeEHHHhhccc---CCc--e---EEEEeC-----CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 99988877654442211 000 0 011221 1233333 345677899999999988764433
No 20
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=70.23 E-value=42 Score=27.26 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=74.1
Q ss_pred CccEEE--EecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEc-----CCCeEEEEEc
Q psy1607 28 DLVVTD--IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA-----GGWHSAARTQ 100 (241)
Q Consensus 28 ~~~i~~--i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~-----G~~~s~~lt~ 100 (241)
+..+.. ++...++.+++|+.|++|..-...-...+..... .+....+....+++|+.+.. ...+.+++|+
T Consensus 41 ~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G---~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~ 117 (307)
T 1zi0_A 41 EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG---RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 117 (307)
T ss_dssp -CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC---EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEET
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC---eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeC
Confidence 344444 5567789999999999999887655544432221 11111122225567776644 2345778899
Q ss_pred CCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEE--EccCCceEEEecCCcEEEEecCCCCcccC
Q psy1607 101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV--ACGSRHTLALCDDNSLWGCGWNEYNQLSM 176 (241)
Q Consensus 101 ~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i--~~G~~h~~~lt~~g~v~~wG~n~~gqlG~ 176 (241)
+|.+--.-...+.... ... . ..+.+. .+..++.+ ..+..+.+++|++|+++-+-..+--..|.
T Consensus 118 ~G~~Krt~l~e~~~~~---r~G--~---~~i~l~-----~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr 182 (307)
T 1zi0_A 118 NGTVKKTVLTEFNRLR---TAG--K---VAIKLV-----DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 182 (307)
T ss_dssp TSEEEEEEGGGGTTCC---TTC--E---ESSCCC-----TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CCeEEEEEHHHhhccc---cCC--e---EEEEEC-----CCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCC
Confidence 9988766443321111 000 0 011221 12344443 34667899999999999886655444433
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=64.73 E-value=41 Score=30.31 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.7
Q ss_pred CCceEEEecCCcEEEEec
Q psy1607 151 SRHTLALCDDNSLWGCGW 168 (241)
Q Consensus 151 ~~h~~~lt~~g~v~~wG~ 168 (241)
.+|++++..+|+||++|-
T Consensus 288 ~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 288 GYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SSCEEEECTTSCEEEECC
T ss_pred cccceEEecCCeEEEEeC
Confidence 357777777999999986
No 22
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=61.76 E-value=69 Score=26.62 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=40.5
Q ss_pred ccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEe
Q psy1607 29 LVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWG 108 (241)
Q Consensus 29 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G 108 (241)
..|..++......+.-..+|.|..|-..... ....+. .....|..++......+.-..+|.|..|-
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-------------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGE-------------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWD 239 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSCC-------------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEE
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCCc-------------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEe
Confidence 3566666655555566677777777642210 001111 12235677776666777778899999996
Q ss_pred CC
Q psy1607 109 WN 110 (241)
Q Consensus 109 ~n 110 (241)
..
T Consensus 240 ~~ 241 (435)
T 1p22_A 240 MA 241 (435)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 23
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.96 E-value=66 Score=26.16 Aligned_cols=119 Identities=10% Similarity=0.010 Sum_probs=63.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeE--EEEcCCCeEEEEEcCCCEEEEeCCCCCcc
Q psy1607 38 FDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVV--QISAGGWHSAARTQDGFLYAWGWNNGGQV 115 (241)
Q Consensus 38 ~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~--~I~~G~~~s~~lt~~g~vy~~G~n~~gql 115 (241)
....+++|.+|.+-..-...+.....+... ...+..-.+..++ .+.....+.+++|++|++|..--..-...
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g------~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~ 81 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKG------LSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDS 81 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCC------EECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCC------ceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCC
Confidence 345778899999886654444322211100 0001111222333 34556778899999999998865432222
Q ss_pred CCCCCCCceeeCCccccccccCCCCCCcEEEEEcc-----CCceEEEecCCcEEEEecCC
Q psy1607 116 GVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG-----SRHTLALCDDNSLWGCGWNE 170 (241)
Q Consensus 116 g~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G-----~~h~~~lt~~g~v~~wG~n~ 170 (241)
+..... .+....+.+. .+.+|+.+... ..+.+++|++|.++-.--.+
T Consensus 82 ~r~~~G---~~i~~~l~l~-----~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~ 133 (312)
T 1suu_A 82 SRASKG---QNISELINLG-----DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTD 133 (312)
T ss_dssp ---------CBGGGTSCCC-----TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred CccCCC---cChhhccCCC-----CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHH
Confidence 211111 1122334433 34577777654 34578899999888765543
No 24
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=59.45 E-value=76 Score=26.35 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=43.1
Q ss_pred CccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEE
Q psy1607 28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAW 107 (241)
Q Consensus 28 ~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~ 107 (241)
...|..++......+.-..+|.|..|-...... ........-....|..++....+.+.-..+|.|..|
T Consensus 213 ~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 213 CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281 (435)
T ss_dssp CSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-----------CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC-----------ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 346777777777777778889999886532111 011111111223566666655666667778888888
Q ss_pred eCC
Q psy1607 108 GWN 110 (241)
Q Consensus 108 G~n 110 (241)
-..
T Consensus 282 d~~ 284 (435)
T 1p22_A 282 NTS 284 (435)
T ss_dssp ETT
T ss_pred ECC
Confidence 654
No 25
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=53.34 E-value=84 Score=25.03 Aligned_cols=131 Identities=12% Similarity=-0.036 Sum_probs=77.1
Q ss_pred CCccEEEEec--CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcC--CCeEEEEEcCC
Q psy1607 27 LDLVVTDIAC--GFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG--GWHSAARTQDG 102 (241)
Q Consensus 27 ~~~~i~~i~~--G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~~s~~lt~~g 102 (241)
.+..+..+.. +.++.+++|++|++|.+-......+|..... .. .+....+.+|+.+... ..+.+++|++|
T Consensus 114 egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G--v~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 114 EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG--VQ----GIKLEKNDETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC--EE----CCCCCTTCCEEEEEEESSCSEEEEEETTS
T ss_pred CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC--EE----EEccCCCCEEEEEEEeCCCCEEEEEeCCC
Confidence 4456666543 4567999999999999987766666554332 00 1111234566665443 34678889999
Q ss_pred CEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEE--EccCCceEEEecCCcEEE--EecCCCCcccC
Q psy1607 103 FLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV--ACGSRHTLALCDDNSLWG--CGWNEYNQLSM 176 (241)
Q Consensus 103 ~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i--~~G~~h~~~lt~~g~v~~--wG~n~~gqlG~ 176 (241)
.+.-.-.+.+...+.+..... .. . .+.+++.+ ..++...+++|++|++.- +-.++.-..|.
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~--~i------~-----~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTE--VS------G-----TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEE--CC------C-----SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBCCT
T ss_pred cEEEeEHHHcccCCCCCcceE--EE------c-----CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCcCC
Confidence 988776555443332221111 00 1 12344443 235678899999999988 76555444443
No 26
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=52.46 E-value=84 Score=24.76 Aligned_cols=131 Identities=10% Similarity=0.031 Sum_probs=71.6
Q ss_pred CCccEEEE--ecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcC--CCeEEEEEcCC
Q psy1607 27 LDLVVTDI--ACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG--GWHSAARTQDG 102 (241)
Q Consensus 27 ~~~~i~~i--~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~~s~~lt~~g 102 (241)
.+..+..+ ....++.+++|+.|++|..-....... . .. -.+....+....+.+|+.+... ..+.+++|++|
T Consensus 31 e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r--~~--G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G 105 (256)
T 1zvt_A 31 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-R--GQ--GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAG 105 (256)
T ss_dssp TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-S--SC--CEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTS
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc-C--CC--CeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCC
Confidence 44555554 455678899999999999886543221 1 11 0111112222346678877663 44577889999
Q ss_pred CEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEE--E-ccCCceEEEecCCcEEEEecCCCCccc
Q psy1607 103 FLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV--A-CGSRHTLALCDDNSLWGCGWNEYNQLS 175 (241)
Q Consensus 103 ~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i--~-~G~~h~~~lt~~g~v~~wG~n~~gqlG 175 (241)
.+.-.-...+.... .... ..+.+. .+..++.+ . .+..+.+++|++|++.-+-.++.-..|
T Consensus 106 ~~Kr~~~~e~~~~~---r~G~-----~~i~L~-----~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 106 YGFVCTFNDLVARN---RAGK-----ALITLP-----ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp EEEEEEGGGGCCCS---TTCE-----ECBCCC-----TTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred eEEEeEHHHhcccC---cCce-----EEEEEC-----CCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 88876554431111 0000 011111 11222222 2 367789999999998887665544443
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=47.41 E-value=89 Score=24.57 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=57.6
Q ss_pred ccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecC--CCCeEEE--EcC--CCeEEEEEcCC
Q psy1607 29 LVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALS--GLGVVQI--SAG--GWHSAARTQDG 102 (241)
Q Consensus 29 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~--~~~i~~I--~~G--~~~s~~lt~~g 102 (241)
..|..++......+....+|.|..|-.....+.-..... .......+..+. ...|..+ +-. ..+.+.-..+|
T Consensus 232 ~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 309 (366)
T 3k26_A 232 NYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKP--SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG 309 (366)
T ss_dssp SCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCT--TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred ceEEEEEEcCCEEEEEecCCEEEEEeCCCcccccccccc--CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence 345555544667777778899999886433221111111 111111122111 1122222 222 34455566789
Q ss_pred CEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEcc--CCceEEEecCCcEEEEe
Q psy1607 103 FLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG--SRHTLALCDDNSLWGCG 167 (241)
Q Consensus 103 ~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G--~~h~~~lt~~g~v~~wG 167 (241)
.|++|-......... ....+... .....|..++.- ....+.-.++|.|+.|=
T Consensus 310 ~i~vwd~~~~~~~~~---------~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 310 KLYVWDLEVEDPHKA---------KCTTLTHH----KCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp CEEEEECCSSSGGGC---------EEEEECCT----TCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cEEEEECCCCCCccc---------cceEEccc----ccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 999997643211100 00011100 002456666644 34455566788898884
No 28
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=45.87 E-value=1.3e+02 Score=24.93 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=38.2
Q ss_pred CeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcE
Q psy1607 84 GVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSL 163 (241)
Q Consensus 84 ~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v 163 (241)
.|..++....+.+.-..+|.|..|-......+ . .+.. ....+..++...+..+.-..+|.|
T Consensus 281 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~----~~~~------~~~~v~~~~~~~~~l~~~~~dg~i 341 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI---------H----TLTG------HQSLTSGMELKDNILVSGNADSTV 341 (445)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTCCEE---------E----EECC------CCSCEEEEEEETTEEEEEETTSCE
T ss_pred ceEEEEECCCEEEEEeCCCeEEEEECCCCCEE---------E----EEcC------CcccEEEEEEeCCEEEEEeCCCeE
Confidence 56666665566666677888888865431111 0 0000 112455555555666666778888
Q ss_pred EEEec
Q psy1607 164 WGCGW 168 (241)
Q Consensus 164 ~~wG~ 168 (241)
..|=.
T Consensus 342 ~vwd~ 346 (445)
T 2ovr_B 342 KIWDI 346 (445)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88854
No 29
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=45.63 E-value=1e+02 Score=23.65 Aligned_cols=16 Identities=6% Similarity=-0.062 Sum_probs=10.1
Q ss_pred eEEEEEcCCCEEEEeC
Q psy1607 94 HSAARTQDGFLYAWGW 109 (241)
Q Consensus 94 ~s~~lt~~g~vy~~G~ 109 (241)
..++++.+|++|+...
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4566666777776654
No 30
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=44.89 E-value=1e+02 Score=28.14 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=14.5
Q ss_pred CCceEEEecCCcEEEEec
Q psy1607 151 SRHTLALCDDNSLWGCGW 168 (241)
Q Consensus 151 ~~h~~~lt~~g~v~~wG~ 168 (241)
..|++++..+++||++|-
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 467888887799999985
No 31
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=42.46 E-value=84 Score=28.67 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=32.6
Q ss_pred CEEEEEEC-CCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEE----EcCCCeEEEEEcCCCEEEEeCC
Q psy1607 39 DHCLALTQ-EGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQI----SAGGWHSAARTQDGFLYAWGWN 110 (241)
Q Consensus 39 ~h~~~lt~-~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I----~~G~~~s~~lt~~g~vy~~G~n 110 (241)
.|++++.. +++||.+|-.....- ..+ .-...+ ....+...+ ..-..|++++-.+|+||++|-.
T Consensus 442 ~hs~~~~~~~~~lyv~GG~~~~~~---~~~-----dv~~yd-~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 442 CHTFTTISRNNQLLLIGGRKAPHQ---GLS-----DNWIFD-MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp SCEEEEETTTTEEEEECCBSSTTC---BCC-----CCEEEE-TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCB
T ss_pred ceEEEEEccCCEEEEEcCCCCCCC---ccc-----cEEEEe-CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCC
Confidence 68877776 999999994221110 000 000111 111111111 1234677777568999999853
No 32
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=35.60 E-value=1.2e+02 Score=25.64 Aligned_cols=73 Identities=10% Similarity=0.036 Sum_probs=42.4
Q ss_pred ccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccC
Q psy1607 72 MEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGS 151 (241)
Q Consensus 72 ~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~ 151 (241)
..|.....+.. |.+++. ....+++.++|.|..|-.....+... +... ...+..+.+-.
T Consensus 79 ~~~~~~~~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~~-------------~~~~------~~~v~~i~~~~ 136 (388)
T 1xip_A 79 LTFKWEKEIPD--VIFVCF-HGDQVLVSTRNALYSLDLEELSEFRT-------------VTSF------EKPVFQLKNVN 136 (388)
T ss_dssp CCCSEEEECTT--EEEEEE-ETTEEEEEESSEEEEEESSSTTCEEE-------------EEEC------SSCEEEEEECS
T ss_pred ccceEEeeCCC--eeEEEE-CCCEEEEEcCCcEEEEEchhhhccCc-------------ccee------ecceeeEEecC
Confidence 34433333554 889999 77777777889999997654332110 0000 11344444444
Q ss_pred CceEEEecCCcEEEE
Q psy1607 152 RHTLALCDDNSLWGC 166 (241)
Q Consensus 152 ~h~~~lt~~g~v~~w 166 (241)
...++++.+|.|+.|
T Consensus 137 p~~av~~~dG~L~v~ 151 (388)
T 1xip_A 137 NTLVILNSVNDLSAL 151 (388)
T ss_dssp SEEEEEETTSEEEEE
T ss_pred CCEEEEECCCCEEEE
Confidence 446777788888877
No 33
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=35.05 E-value=92 Score=22.28 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=34.2
Q ss_pred cEEEEecC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecC--CCCeEEEEcCCCeEEEEEcCCCEEE
Q psy1607 30 VVTDIACG-FDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALS--GLGVVQISAGGWHSAARTQDGFLYA 106 (241)
Q Consensus 30 ~i~~i~~G-~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~--~~~i~~I~~G~~~s~~lt~~g~vy~ 106 (241)
.++.|-|= ..+.+.+..+|+||+--. . . .......+.... ...|+.+..|+ -++++++|++|.
T Consensus 73 G~V~L~g~~sg~yL~mn~~G~l~Gs~~--~--------t--~ecsflEi~~en~y~v~i~g~~sg~--YLamnk~Grlyg 138 (142)
T 3p6j_A 73 GEVLLKSTETGQYLRINPDGTVDGTRD--R--------S--DTHIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDG 138 (142)
T ss_dssp TEEEEEETTTTEEEEECTTSBEEEECC--T--------T--CGGGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEE
T ss_pred CEEEEEEecCCEEEeECCCCCEeeccc--C--------C--CCceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCcc
Confidence 35555543 356677888999996322 1 0 111112222111 12333444454 789999999995
Q ss_pred E
Q psy1607 107 W 107 (241)
Q Consensus 107 ~ 107 (241)
-
T Consensus 139 s 139 (142)
T 3p6j_A 139 T 139 (142)
T ss_dssp E
T ss_pred C
Confidence 3
No 34
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=32.81 E-value=2.1e+02 Score=23.57 Aligned_cols=110 Identities=8% Similarity=0.030 Sum_probs=62.0
Q ss_pred ccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEe
Q psy1607 29 LVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWG 108 (241)
Q Consensus 29 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G 108 (241)
..|..++....+.+.-..+|.|..|-...... ...+. .....+..++......+.-..+|.|..|-
T Consensus 280 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 280 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-------------IHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWD 345 (445)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEETTTCCE-------------EEEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CceEEEEECCCEEEEEeCCCeEEEEECCCCCE-------------EEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEE
Confidence 35666666666666667778887776432110 00111 11224555555556666777899999996
Q ss_pred CCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEec
Q psy1607 109 WNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGW 168 (241)
Q Consensus 109 ~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~ 168 (241)
......+ .. +... ......|..++...++.+.-..+|.|..|--
T Consensus 346 ~~~~~~~---------~~----~~~~---~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 346 IKTGQCL---------QT----LQGP---NKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp TTTCCEE---------EE----ECST---TSCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred CCCCcEE---------EE----EccC---CCCCCCEEEEEECCCEEEEEeCCCeEEEEEC
Confidence 5421110 00 1100 0012467777776677777788999999964
No 35
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=32.31 E-value=1.1e+02 Score=24.17 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=12.0
Q ss_pred CeEEEEEcCCCEEEEeCC
Q psy1607 93 WHSAARTQDGFLYAWGWN 110 (241)
Q Consensus 93 ~~s~~lt~~g~vy~~G~n 110 (241)
.|++++ -+++||++|-.
T Consensus 141 ~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred ceeEEE-ECCEEEEEeCC
Confidence 455555 57789999864
No 36
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=32.14 E-value=2.1e+02 Score=23.38 Aligned_cols=132 Identities=12% Similarity=0.118 Sum_probs=74.0
Q ss_pred CccEEE--EecCCCEEEEEECCCcEEEEeCC--CCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcC--CCeEEEEEcC
Q psy1607 28 DLVVTD--IACGFDHCLALTQEGIVFSWGNG--SRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG--GWHSAARTQD 101 (241)
Q Consensus 28 ~~~i~~--i~~G~~h~~~lt~~g~v~~~G~n--~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~~s~~lt~~ 101 (241)
+..++. +..+.++.+++|++|++|.+-.. .-..+|..... . ..+....+.+|+.+..- ..+.+++|++
T Consensus 145 ~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G--v----~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~ 218 (327)
T 3uc1_A 145 NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG--V----QGMRFNIDDRLLSLNVVREGTYLLVATSG 218 (327)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC--E----ESSCCCTTCCEEEEEECCTTCEEEEEETT
T ss_pred CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC--e----eeecCCCCCEEEEEEEECCCCEEEEEeCC
Confidence 445544 34567889999999999999877 55445544322 0 01222245677776553 3467888999
Q ss_pred CCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEE--EccCCceEEEecCCcEEEEecCCCCccc
Q psy1607 102 GFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV--ACGSRHTLALCDDNSLWGCGWNEYNQLS 175 (241)
Q Consensus 102 g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i--~~G~~h~~~lt~~g~v~~wG~n~~gqlG 175 (241)
|.+--.-...+...+.+..... .+.+. ..+..++.+ ..+....+++|++|++.-+-..+--..|
T Consensus 219 G~~Krt~l~e~~~~~R~~~G~~------~~~l~----~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 219 GYAKRTAIEEYPVQGRGGKGVL------TVMYD----RRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAG 284 (327)
T ss_dssp SEEEEEEGGGSCBCCTTSCCEE------SSCCC----TTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCC
T ss_pred CcEEEEEHHHccccCcCCCcEE------EEEec----CCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccC
Confidence 9777664443332222111110 01111 012234433 3466789999999998877554444433
No 37
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.86 E-value=2.2e+02 Score=23.03 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=39.0
Q ss_pred EEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEc--CCCeEEEEEcCCCEEEEe
Q psy1607 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA--GGWHSAARTQDGFLYAWG 108 (241)
Q Consensus 31 i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~--G~~~s~~lt~~g~vy~~G 108 (241)
+..++-...+.++...+|.|+.|-..... ....+.......|..++- ...+.++-..+|.|..|-
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS-------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC-------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc-------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 33455556778888899999999753210 111111112334555543 334555566789999996
Q ss_pred CCC
Q psy1607 109 WNN 111 (241)
Q Consensus 109 ~n~ 111 (241)
...
T Consensus 163 ~~~ 165 (401)
T 4aez_A 163 VES 165 (401)
T ss_dssp TTT
T ss_pred CcC
Confidence 543
No 38
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=29.49 E-value=3.4e+02 Score=25.05 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=68.9
Q ss_pred EecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcC--CCeEEEEEcCCCEEEEeCCC
Q psy1607 34 IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG--GWHSAARTQDGFLYAWGWNN 111 (241)
Q Consensus 34 i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~~s~~lt~~g~vy~~G~n~ 111 (241)
.+...++.+++|+.|++|..-...-... ... -.+....+..-.+++|+.+... ..+.++.|++|.+.-.-...
T Consensus 510 ~~~t~d~ll~ft~~Gr~y~~~~~~lP~~---~~~--G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~ 584 (716)
T 1zvu_A 510 KGKSNQPVVFVDSTGRSYAIDPITLPSA---RGQ--GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 584 (716)
T ss_dssp CCCSSSCEEEEETTSEEEEECTTTSCCC---C-----CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EecCCCEEEEEecCCcEEEEEeeecccc---ccc--CeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHH
Confidence 3444577888999999998776543331 111 1111222232356788887765 34567888899888664433
Q ss_pred CCccCCCCCCCceeeCCccccccccCCCCCCcEE---EEEccCCceEEEecCCcEEEEecCCCCcccC
Q psy1607 112 GGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVV---DVACGSRHTLALCDDNSLWGCGWNEYNQLSM 176 (241)
Q Consensus 112 ~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~---~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~ 176 (241)
+... ..... ..+.+. .+..++ .+..+..+.+++|++|++.-|-.++--..|.
T Consensus 585 ~~~~---~~~g~-----~ai~L~-----~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 585 LVAR---NRAGK-----ALITLP-----ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp GCCC---STTCE-----ECBCCC-----TTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred hccc---Cccce-----EEEeeC-----CCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 2110 00000 112222 112222 2224678899999999999887765544433
No 39
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=28.94 E-value=2.3e+02 Score=23.06 Aligned_cols=74 Identities=5% Similarity=-0.152 Sum_probs=43.5
Q ss_pred EEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccC-----CceEEEecCC
Q psy1607 87 QISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGS-----RHTLALCDDN 161 (241)
Q Consensus 87 ~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~-----~h~~~lt~~g 161 (241)
.++....+.+++|+.|++|..--..-...+.... -.+....+.+. .+.+|+.+..-. ...+++|++|
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~---G~~i~~~i~L~-----~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDL---GQHIANIIPID-----RDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSC---CEEGGGTSCCC-----TTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCC---CcChhhccCCC-----CCCEEEEEEEecccCCCceEEEEeCCC
Confidence 3556778889999999999886654333332111 11222334333 345677664432 2478888898
Q ss_pred cEEEEec
Q psy1607 162 SLWGCGW 168 (241)
Q Consensus 162 ~v~~wG~ 168 (241)
.+.-.=-
T Consensus 117 ~iKrt~l 123 (323)
T 1wp5_A 117 MVKKTEL 123 (323)
T ss_dssp EEEEEEG
T ss_pred eEEEeEH
Confidence 7765433
No 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=28.21 E-value=4e+02 Score=25.48 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=17.1
Q ss_pred ccEEEEecCCC--EEEEEECCCcEEEEeCC
Q psy1607 29 LVVTDIACGFD--HCLALTQEGIVFSWGNG 56 (241)
Q Consensus 29 ~~i~~i~~G~~--h~~~lt~~g~v~~~G~n 56 (241)
..|..++...+ ..+.-+.+|.|+.|-..
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEESS
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 35666665543 34444677888888654
No 41
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=27.27 E-value=1.8e+02 Score=22.69 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=11.8
Q ss_pred CceEEEecCCcEEEEec
Q psy1607 152 RHTLALCDDNSLWGCGW 168 (241)
Q Consensus 152 ~h~~~lt~~g~v~~wG~ 168 (241)
.|++++. +++||++|-
T Consensus 255 ~~~~~~~-~~~i~v~GG 270 (308)
T 1zgk_A 255 ALGITVH-QGRIYVLGG 270 (308)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceEEEEE-CCEEEEEcC
Confidence 5666655 788999985
No 42
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=26.75 E-value=2.2e+02 Score=22.04 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=11.9
Q ss_pred CceEEEecCCcEEEEec
Q psy1607 152 RHTLALCDDNSLWGCGW 168 (241)
Q Consensus 152 ~h~~~lt~~g~v~~wG~ 168 (241)
.|++++. +++||++|-
T Consensus 193 ~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 193 NHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 5666665 788999974
No 43
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=24.56 E-value=2.4e+02 Score=21.71 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=12.4
Q ss_pred CCeEEEEEcCCCEEEEeCC
Q psy1607 92 GWHSAARTQDGFLYAWGWN 110 (241)
Q Consensus 92 ~~~s~~lt~~g~vy~~G~n 110 (241)
..|++++. +++||++|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 34555554 7899999853
No 44
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=23.20 E-value=59 Score=20.24 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=15.2
Q ss_pred EEEecCCCEEEEEECCCcEE
Q psy1607 32 TDIACGFDHCLALTQEGIVF 51 (241)
Q Consensus 32 ~~i~~G~~h~~~lt~~g~v~ 51 (241)
..|-+|.+|+++...+|.|.
T Consensus 49 ~nVg~GkD~TLfAl~~G~V~ 68 (69)
T 2ftc_O 49 AHVGVGKNKCLYALEEGIVR 68 (69)
T ss_pred CCeeecCCCcEEEccceEEe
Confidence 35678888888888888763
No 45
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=20.02 E-value=64 Score=22.65 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=13.6
Q ss_pred eEEEecCCcEEEEecCCC
Q psy1607 154 TLALCDDNSLWGCGWNEY 171 (241)
Q Consensus 154 ~~~lt~~g~v~~wG~n~~ 171 (241)
+++++++|+||. |.|--
T Consensus 31 Aal~~~dG~i~~-G~NvE 47 (130)
T 2z3g_A 31 SAALSSDGRIFT-GVNVY 47 (130)
T ss_dssp EEEEETTSCEEE-EECCC
T ss_pred EEEEecCCeEEE-Eeccc
Confidence 456779999996 99866
Done!