RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1607
(241 letters)
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1
domain-containing proteins [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 476
Score = 99 bits (249), Expect = 3e-24
Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 20/209 (9%)
Query: 28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQ 87
+ +A G DH +ALT EG V+ WG+ +GQLG P+S + + +
Sbjct: 230 KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTS-ERLKLVVLVGDPFAIRNIKY 288
Query: 88 ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV 147
++ G HS A +DG +YAWG N GQ+G ++ P ++ + I +
Sbjct: 289 VACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKP-NYKQLLSGVTICS--I 345
Query: 148 ACGSRHTLALCDDNSLWGCGWNEYNQLSMG-CGVSQVSVMTRLSVPEHVKNCPIVKLFAE 206
+ G H+L L D +L+ G + QL + VS T+LSV + E
Sbjct: 346 SAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKL----------E 395
Query: 207 HWNSARLSVPEHAKDSSIVKLFAGHWNSG 235
D S+ W G
Sbjct: 396 QVACGTHHNIARTDDGSVYS-----WGWG 419
Score = 88.7 bits (220), Expect = 3e-20
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 11/147 (7%)
Query: 34 IACGFDHCLALTQEGIVFSWGNGSRGQLG---YPSSGTDANMEPREIRALSGLGVVQISA 90
+ACG DH LAL ++G +++WG GQLG G + + LSG+ + ISA
Sbjct: 289 VACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYK-QLLSGVTICSISA 347
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
G HS +DG LYA+G + GQ+G++ ++ + V P +S IK+ VACG
Sbjct: 348 GESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS-------VAIKLEQVACG 400
Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMG 177
+ H +A DD S++ GW E+ L G
Sbjct: 401 THHNIARTDDGSVYSWGWGEHGNLGNG 427
Score = 84.1 bits (208), Expect = 9e-19
Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 13/206 (6%)
Query: 17 FHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQL--GYPSSGTDANMEP 74
F +P L V +ACG++ + LT +G V+SWG G+L G + +++
Sbjct: 164 FKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQF 223
Query: 75 REIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVG--VEGKLDLVVHDPHPMS 132
++ + +VQ++AG H A T +G +Y WG N GQ+G +L LVV P
Sbjct: 224 TPLK-VPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP-- 280
Query: 133 WSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVP 192
F +NIK VACG H+LAL +D ++ G N + QL G ++ T+ +
Sbjct: 281 ----FAIRNIK--YVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYK 334
Query: 193 EHVKNCPIVKLFAEHWNSARLSVPEH 218
+ + I + A +S L
Sbjct: 335 QLLSGVTICSISAGESHSLILRKDGT 360
Score = 76.8 bits (189), Expect = 4e-16
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
P+ + + I+ G H L L ++G ++++G G RGQLG + ++
Sbjct: 331 PNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQ---EEITIDVSTPTK 387
Query: 80 LSGLG-VVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
LS + Q++ G H+ ART DG +Y+WGW G +G K V +
Sbjct: 388 LSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADV--LVPTLIRQPLLS 445
Query: 139 SQNIKVVDVA 148
NI +
Sbjct: 446 GHNIILAGYG 455
Score = 69.9 bits (171), Expect = 7e-14
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 22/162 (13%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT------------DANME----- 73
+ IACG +H L L +G ++SWG+ G LG D +E
Sbjct: 106 IIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFK 165
Query: 74 -PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMS 132
P A S L VV+++ G S T DG +Y+WG G+ +G +
Sbjct: 166 VPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGE-LGQGSYKNSQKTSIQFT 224
Query: 133 WSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
+ +V +A G+ H +AL ++ ++G G N+ QL
Sbjct: 225 PLKVPKK---AIVQLAAGADHLIALTNEGKVYGWGSNQKGQL 263
Score = 67.6 bits (165), Expect = 4e-13
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 40 HCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPRE-IRALSGLGVVQISAGGWHSAAR 98
H L + V+SWG+ +LG + T + + +++I+ GG HS
Sbjct: 60 HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGL 119
Query: 99 TQDGFLYAWGWNNGGQVGVEGKLDL-------VVHDPHPMSWS------EDFDSQNIKVV 145
DG LY+WG N+ G +G + D+ + D + + + +++VV
Sbjct: 120 DHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV 179
Query: 146 DVACGSRHTLALCDDNSLWGCG 167
+ACG ++ L D ++ G
Sbjct: 180 KLACGWEISVILTADGRVYSWG 201
Score = 56.0 bits (135), Expect = 4e-09
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 94 HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRH 153
H+ + +Y+WG N ++G+ G + V P + ++ +ACG H
Sbjct: 60 HTHLLVKMASVYSWGSNGMNELGL-GNDETKVDRPQLNPF---GRIDKASIIKIACGGNH 115
Query: 154 TLALCDDNSLWGCGWNEYNQLS 175
+L L D +L+ G N+ L
Sbjct: 116 SLGLDHDGNLYSWGDNDDGALG 137
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1)
repeat.
Length = 50
Score = 53.7 bits (130), Expect = 4e-10
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 47 EGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAA 97
+G V++WG GQLG + + P+ + LSG+ VVQ++ G H+ A
Sbjct: 1 DGRVYTWGRNEYGQLGLGD--EEDVLVPQLVEGLSGVRVVQVACGASHTVA 49
Score = 48.3 bits (116), Expect = 3e-08
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLAL 157
DG +Y WG N GQ+G+ + D++V P + ++VV VACG+ HT+AL
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLV--PQLVEGLS-----GVRVVQVACGASHTVAL 50
Score = 27.5 bits (62), Expect = 0.88
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLAL 44
P ++ + V +ACG H +AL
Sbjct: 26 PQLVEGLSGVRVVQVACGASHTVAL 50
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1)
repeat.
Length = 30
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 144 VVDVACGSRHTLALCDDNSLWGCGWNEYNQ 173
VV +A G HTLAL D +++ G N Y Q
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 45.6 bits (109), Expect = 2e-07
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQ 60
V IA G H LALT +G V+ WG+ S GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 45.2 bits (108), Expect = 3e-07
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 85 VVQISAGGWHSAARTQDGFLYAWGWNNGGQ 114
VV I+AG +H+ A T DG +Y WG N+ GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
>gnl|CDD|148739 pfam07304, SRA1, Steroid receptor RNA activator (SRA1). This
family consists of several hypothetical mammalian
steroid receptor RNA activator proteins. SRA-RNAs likely
to encode stable proteins are widely expressed in breast
cancer cell lines. SRA-RNA is a steroid receptor
co-activator which acts as a functional RNA and is
classified as belonging to the growing family of
functional non-coding RNAs.
Length = 157
Score = 27.2 bits (60), Expect = 6.0
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 201 VKLFAEHWNSARLSVPEHAKDSSIVK-LFAGHWNS 234
+KL + W +LS P + +VK L G W++
Sbjct: 74 LKLLEDMWMGGKLSKPVKKRMIKLVKELDDGQWDA 108
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG.
Length = 431
Score = 27.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 139 SQNIKVVDVACGSRHTL---ALCDDNS 162
SQN+++ D+ CG H + +L DDNS
Sbjct: 273 SQNVQINDITCGPGHGISIGSLGDDNS 299
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.445
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,925,967
Number of extensions: 1075317
Number of successful extensions: 780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 19
Length of query: 241
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 147
Effective length of database: 6,768,326
Effective search space: 994943922
Effective search space used: 994943922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)