RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1607
(241 letters)
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 149 bits (378), Expect = 4e-43
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN-MEPREIR 78
P + + + IACG HCLA+T EG V SWG GQLG G + + P++I+
Sbjct: 112 PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGL---GDTEDSLVPQKIQ 168
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
A G+ + ++AG H+AA T+DG LY WGW G +G+ + D +V P ++
Sbjct: 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVT-----S 221
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
+ K+ VACG RHT+++ +L+ GW++Y QL
Sbjct: 222 TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQL 257
Score = 146 bits (370), Expect = 6e-42
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 18 HMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI 77
+P ++ F + + +A G +H A+T++G ++ WG G G LG + P +
Sbjct: 162 LVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD--RTDRLVPERV 219
Query: 78 RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
+ G + ++ G H+ + + G LY +GW+ GQ+G D ++ PH +
Sbjct: 220 TSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI--PHKLE----- 272
Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
N + ++ G RHT+AL D L+G GWN++ Q+
Sbjct: 273 ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQV 309
Score = 142 bits (361), Expect = 1e-40
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 9/155 (5%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
P R+ ++ +ACG+ H ++++ G ++++G GQLG+ + ++ P ++ A
Sbjct: 216 PERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD--LEDHLIPHKLEA 273
Query: 80 LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS 139
LS + QIS G H+ A T DG LY WGWN GQVGV LD P + + +D
Sbjct: 274 LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD--QCSPVQVRFPDDQ-- 329
Query: 140 QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
KVV V+CG RHTLA+ + N+++ G QL
Sbjct: 330 ---KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 361
Score = 142 bits (361), Expect = 1e-40
Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 20/198 (10%)
Query: 18 HMPSRMDHFLDLVVTDIACGFDHCLALTQEGI-VFSWGNGSRGQLGYPSSGTDANMEPRE 76
P+++ + + CG DH +A +Q G+ V+SWG G G+LG+ + + P
Sbjct: 57 PSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN--SSDLFTPLP 114
Query: 77 IRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSED 136
I+AL G+ + QI+ G H A T +G + +WG N GQ+G+ D +V P +
Sbjct: 115 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQ---- 168
Query: 137 FDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
+ I++ VA G+ HT A+ +D L+G GW Y L +G + VPE V
Sbjct: 169 -AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDR-------LVPERVT 220
Query: 197 ---NCPIVKLFAEHWNSA 211
+ + ++
Sbjct: 221 STGGEKMSMVACGWRHTI 238
Score = 135 bits (343), Expect = 5e-38
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V I+ G H +AL IV SWG G GQLG+ + P ++ AL G +V ++
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD--AEDRPSPTQLSALDGHQIVSVTC 75
Query: 91 GGWHSAARTQDGF-LYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVAC 149
G H+ A +Q G +Y+WGW + G++G D + P P+ I++ +AC
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSD--LFTPLPIK-----ALHGIRIKQIAC 128
Query: 150 GSRHTLALCDDNSLWGCGWNEYNQL 174
G H LA+ + + G N+ QL
Sbjct: 129 GDSHCLAVTMEGEVQSWGRNQNGQL 153
Score = 123 bits (311), Expect = 2e-33
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
P +++ + ++ I+ G+ H +ALT +G ++ WG GQ+G + P ++R
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN--NLDQCSPVQVRF 325
Query: 80 LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS 139
VVQ+S G H+ A T+ ++AWG GQ+G+ +D + P +
Sbjct: 326 PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVD--RNFPKIIEA------ 377
Query: 140 QNIKVVDVACGSRHTLALCDDNSL--WGCG 167
VD A G + D +S W
Sbjct: 378 ---LSVDGASGQHIESSNIDPSSGKSWVSP 404
Score = 88.8 bits (221), Expect = 9e-21
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 67 GTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVH 126
G +M E+ V+ ISAG HS A + +WG GQ+G D
Sbjct: 1 GMAEDMAADEV-TAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED--RP 57
Query: 127 DPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDD-NSLWGCGWNEYNQL 174
P +S ++V V CG+ HT+A ++ GW ++ +L
Sbjct: 58 SPTQLSA-----LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRL 101
Score = 33.0 bits (76), Expect = 0.073
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGS 57
D A G + SW + +
Sbjct: 379 SVDGASGQHIESSNIDPSSGKSWVSPA 405
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 150 bits (380), Expect = 5e-43
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 6/183 (3%)
Query: 18 HMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI 77
P ++ F + +A G DH L L +EG+VF+WGNG + QLG ++ +
Sbjct: 193 KTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVM-ERFRLKTLDP 251
Query: 78 RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
R V I++G H A T+D L +WG N GQ GV ++ P +
Sbjct: 252 RPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP- 310
Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKN 197
N+ + +A G H+L L D L+ CG + ++ G + T V +
Sbjct: 311 --DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEV--GIPKDNLPEYTYKDVHGKARA 366
Query: 198 CPI 200
P+
Sbjct: 367 VPL 369
Score = 144 bits (366), Expect = 7e-41
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 7/170 (4%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN--MEPREIRALSGLGVVQI 88
V IA G +HC ALT++ + SWG GQ G D +P+ + + + I
Sbjct: 259 VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSI 318
Query: 89 SAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQ-----NIK 143
+AG HS +QDG LY+ G + +VG+ + K
Sbjct: 319 AAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPK 378
Query: 144 VVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPE 193
VA GS H++A+ + + G+ E + +G V TR+
Sbjct: 379 FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTA 428
Score = 141 bits (356), Expect = 2e-39
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 11/179 (6%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNG--SRGQLGYPSSGTDANMEPREI 77
S V +A + AL G V++WG + G LG+ P ++
Sbjct: 139 ESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKV 198
Query: 78 RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
S +VQ++ G H ++G ++AWG Q+G V + + +
Sbjct: 199 PTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG------RKVMERFRLKTLDPR 252
Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
V +A G H AL DN L G N++ Q G V ++ P+ +
Sbjct: 253 PFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQC--GVS-EDVEDGALVTKPKRLA 308
Score = 134 bits (338), Expect = 7e-37
Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 28/191 (14%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME-PREIRALS--GLGVVQ 87
+ + + H Q +F WG GS +LG + ++ PR L ++
Sbjct: 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71
Query: 88 ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS-------- 139
+ GG H+ A ++ +++WG N+ G +G + S D +
Sbjct: 72 FAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELES 131
Query: 140 --------------QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSV 185
+ KVV +A + AL + ++ G N+ +G ++
Sbjct: 132 TPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKI-- 189
Query: 186 MTRLSVPEHVK 196
P V
Sbjct: 190 -KIQKTPWKVP 199
Score = 120 bits (303), Expect = 6e-32
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT----------D 69
P R+ ++V+ IA G H L L+Q+G ++S G ++G P
Sbjct: 304 PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGK 363
Query: 70 ANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
A P + + ++AG HS A Q+G Y+WG+ VG+ G + P
Sbjct: 364 ARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGL-GPFEDDTEVPT 422
Query: 130 PMSWSEDFDSQNIKVVDVACGSRHTLAL-----CDDNSLWGCGWNEYNQ 173
+ ++ +Q+ ++ V CG + +++ +D ++
Sbjct: 423 RI---KNTATQDHNIILVGCGGQFSVSGGVKLSDEDAEKRADEMDDLEH 468
Score = 96.0 bits (239), Expect = 4e-23
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 84 GVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIK 143
++ H Q ++ WG + ++G+ + + K
Sbjct: 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAK--NKEVKRPRLNPFLPRDEAK 68
Query: 144 VVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKL 203
++ A G HTLAL +++++W G N+ L G S + + + L
Sbjct: 69 IISFAVGGMHTLALDEESNVWSWGCNDVGAL--GRDTSNAKEQLKDMDADDSSDDEDGDL 126
Query: 204 FAEHWNSA---RLSVPEHAKDSSIVKLFAGHWNSGIL 237
A R S P A+ +V+L A S L
Sbjct: 127 NELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCAL 163
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 144 bits (365), Expect = 3e-41
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 19/180 (10%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLG---------YPSSGTDANMEPREIRA-- 79
V +A G DH + LT +G +++ G G +GQLG G + + P+ +
Sbjct: 166 VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKS 225
Query: 80 ---LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSED 136
+ G + + A + +G +Y +G +N Q+G G + P +
Sbjct: 226 RGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFI--PQNL---TS 280
Query: 137 FDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
F + V + G HT+ + + + G EY +L +G G + S+ T +S V
Sbjct: 281 FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVS 340
Score = 138 bits (351), Expect = 3e-39
Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 12/146 (8%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLG--VVQI 88
D CG A++ EG V+ +G + QLG P T++ P+ + + V
Sbjct: 234 FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG--TESCFIPQNLTSFKNSTKSWVGF 291
Query: 89 SAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA 148
S G H+ +G Y+ G G++G+ G+ P +S V VA
Sbjct: 292 SGGQHHTVCMDSEGKAYSLGRAEYGRLGL-GEGAEEKSIPTLISRLP-------AVSSVA 343
Query: 149 CGSRHTLALCDDNSLWGCGWNEYNQL 174
CG+ A+ D ++ G QL
Sbjct: 344 CGASVGYAVTKDGRVFAWGMGTNYQL 369
Score = 138 bits (349), Expect = 9e-39
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 14/155 (9%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNG--SRGQLGYPSSGTDANMEPREIRALSGLGVVQI 88
V ++ G H ALT +G VF WG+ + G +G ++ + VV++
Sbjct: 113 VVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGL---LEPMKKSMVPVQVQLDVPVVKV 169
Query: 89 SAGGWHSAARTQDGFLYAWGWNNGGQVG---------VEGKLDLVVHDPHPMSWSEDFDS 139
++G H T DG LY G GQ+G + + P +
Sbjct: 170 ASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSR 229
Query: 140 QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
+++ D CG+ T A+ + ++G G + Y+QL
Sbjct: 230 GHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQL 264
Score = 136 bits (344), Expect = 4e-38
Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 16/184 (8%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V G H + L++ G V+S+G G LG +S + M P ++ VVQ+SA
Sbjct: 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVSA 118
Query: 91 GGWHSAARTQDGFLYAWG--WNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA 148
G H+AA T DG ++ WG +N G +G+ + P + VV VA
Sbjct: 119 GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK-KSMVPVQVQLDV-------PVVKVA 170
Query: 149 CGSRHTLALCDDNSLWGCGWNEYNQL----SMGCGVSQVSVMTRLSVPEHVKNCPIVKLF 204
G+ H + L D L+ G E QL + + RL VP+ V
Sbjct: 171 SGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRG 230
Query: 205 AEHW 208
+
Sbjct: 231 HVRF 234
Score = 134 bits (340), Expect = 2e-37
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 27 LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVV 86
D + H T+ G+V + G G GQLG + + +P + VV
Sbjct: 6 ADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERK-KPALVSIPED--VV 62
Query: 87 QISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVD 146
Q AGG H+ ++ G +Y++G N+ G +G + ++ P + E KVV
Sbjct: 63 QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE-------KVVQ 115
Query: 147 VACGSRHTLALCDDNSL--WGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
V+ G HT AL DD + WG + + + + + V ++ + V
Sbjct: 116 VSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVV 167
Score = 124 bits (314), Expect = 8e-34
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
+ G H + + EG +S G G+LG + P I L V ++
Sbjct: 288 WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE-KSIPTLISRLPA--VSSVAC 344
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
G A T+DG ++AWG Q+G D P M +N V+ V+ G
Sbjct: 345 GASVGYAVTKDGRVFAWGMGTNYQLGTGQDED--AWSPVEMMGK---QLENRVVLSVSSG 399
Query: 151 SRHTLALCDD 160
+HT+ L D
Sbjct: 400 GQHTVLLVKD 409
Score = 90.5 bits (225), Expect = 3e-21
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
+ H + T+ G + G + GQ+G+ G+ + P +S ED
Sbjct: 4 PPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGL-GENVMERKKPALVSIPED-- 60
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
VV G HT+ L ++ G N+ L
Sbjct: 61 -----VVQAEAGGMHTVCLSKSGQVYSFGCNDEGAL 91
Score = 77.4 bits (191), Expect = 1e-16
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN-MEPREIR--ALSGLGVVQ 87
V+ +ACG A+T++G VF+WG G+ QLG G D + P E+ L V+
Sbjct: 339 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGT---GQDEDAWSPVEMMGKQLENRVVLS 395
Query: 88 ISAGGWHSAARTQDG 102
+S+GG H+ +D
Sbjct: 396 VSSGGQHTVLLVKDK 410
Score = 31.1 bits (71), Expect = 0.34
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 24 DHFLDLVVTDIACGFDHCLALTQEG 48
+ VV ++ G H + L ++
Sbjct: 386 KQLENRVVLSVSSGGQHTVLLVKDK 410
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 141 bits (357), Expect = 4e-40
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
P ++ + V D+A G H +T G +++WG G G+LG+ ++ ++P+ + A
Sbjct: 150 PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSD--SEDQLKPKLVEA 207
Query: 80 LSGLGVVQIS--AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
L G VV I+ +G + T D +++WG + G++G G V P +
Sbjct: 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKV--PMKID----- 260
Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
+ VV V CGS+ ++AL +++ G +Y++L
Sbjct: 261 SLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRL 297
Score = 140 bits (355), Expect = 7e-40
Identities = 55/149 (36%), Positives = 76/149 (51%), Gaps = 11/149 (7%)
Query: 28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQ 87
+ + G HCLAL+ EG V+SWG G+LG+ + PR I +L G+ VV
Sbjct: 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN--RSPCDRPRVIESLRGIEVVD 163
Query: 88 ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV 147
++AGG HSA T G LY WG G++G D P + Q +VVD+
Sbjct: 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED--QLKPKLVE-----ALQGHRVVDI 216
Query: 148 ACGS--RHTLALCDDNSLWGCGWNEYNQL 174
ACGS TL L DD+++W G +Y +L
Sbjct: 217 ACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245
Score = 139 bits (352), Expect = 2e-39
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 18 HMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI 77
+P+ + L + G A+T +G +++ G G+ G+LG T++ P +
Sbjct: 42 KVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG--TESVSTPTLL 99
Query: 78 RALSGLGV--VQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSE 135
++ + + V +++GG H A + +G +Y+WG G++G + P +
Sbjct: 100 ESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDR--PRVIE--- 154
Query: 136 DFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
+ I+VVDVA G H+ + L+ G Y +L
Sbjct: 155 --SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRL 191
Score = 139 bits (352), Expect = 2e-39
Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 7/141 (4%)
Query: 34 IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW 93
L G ++ WG+ RGQLG P AL+ L VQ+ G
Sbjct: 6 HHSSGRENLYFQGSGTIYGWGHNHRGQLGGIE--GAKVKVPTPCEALATLRPVQLIGGEQ 63
Query: 94 HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRH 153
A T DG LYA G+ GG++G+ G V P + E IK V V G +H
Sbjct: 64 TLFAVTADGKLYATGYGAGGRLGIGGTES--VSTPTLL---ESIQHVFIKKVAVNSGGKH 118
Query: 154 TLALCDDNSLWGCGWNEYNQL 174
LAL + ++ G E +L
Sbjct: 119 CLALSSEGEVYSWGEAEDGKL 139
Score = 138 bits (349), Expect = 5e-39
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 20 PSRMDHFLDLVVTDIAC--GFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI 77
P ++ V DIAC G L LT + V+SWG+G G+LG +D P +I
Sbjct: 202 PKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG--SDGCKVPMKI 259
Query: 78 RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
+L+GLGVV++ G S A T+ G +Y WG + ++G V P + +
Sbjct: 260 DSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDH--VRRPRQVQGLQ-- 315
Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
KV+ +A GS H + +D ++ G N+ QL
Sbjct: 316 ---GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQL 349
Score = 126 bits (319), Expect = 1e-34
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 20 PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
P ++D L V + CG +ALT+ G V++WG G +LG+ S D PR+++
Sbjct: 256 PMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--DDHVRRPRQVQG 313
Query: 80 LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS 139
L G V+ I+ G H T+DG +Y WG N+ GQ+G + P ++ +
Sbjct: 314 LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNA--IQRPRLVAALQGK-- 369
Query: 140 QNIKVVDVACGSRHTLALCD 159
KV VACGS HTLA
Sbjct: 370 ---KVNRVACGSAHTLAWST 386
Score = 90.8 bits (226), Expect = 2e-21
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 85 VVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKV 144
+ G + G +Y WG N+ GQ+G V P P ++
Sbjct: 3 HHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAK--VKVPTPCEALA-----TLRP 55
Query: 145 VDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
V + G + A+ D L+ G+ +L
Sbjct: 56 VQLIGGEQTLFAVTADGKLYATGYGAGGRL 85
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 139 bits (352), Expect = 3e-39
Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 18/170 (10%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN---------MEPREIRALS 81
IA G DH + LT G VF+ G +GQLG S + + + P ++
Sbjct: 181 CCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR 240
Query: 82 GLGVVQISAGGWHSAART-QDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQ 140
I A + + R Q ++A G NN Q+ E K P ++
Sbjct: 241 AKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFA--LTP------IKTE 292
Query: 141 NIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLS 190
+ +A G HT+ L D G EY +L +G V T +
Sbjct: 293 LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVK 342
Score = 137 bits (347), Expect = 2e-38
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 10/149 (6%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
IA + T G V GNG GQLG G D R V ISA
Sbjct: 26 RARIAFHLELPKRRTVLGNVLVCGNGDVGQLGL---GEDILERKRLSPVAGIPDAVDISA 82
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
GG H+ T+ G +Y++G N+ G +G + D P + K + ++ G
Sbjct: 83 GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG-------KALCISAG 135
Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMGCG 179
H+ L +D ++ G + +MG
Sbjct: 136 DSHSACLLEDGRVFAWGSFRDSHGNMGLT 164
Score = 132 bits (334), Expect = 1e-36
Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 11/169 (6%)
Query: 7 SGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQE-GIVFSWGNGSRGQLGYPS 65
SG + + P+++ I + ++++ G + QL + +
Sbjct: 220 SGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHET 279
Query: 66 SGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVV 125
I+ + I+ G H+ T D G G++G+ G + VV
Sbjct: 280 --KGKEFALTPIKTE-LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGL-GDVKDVV 335
Query: 126 HDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
P + + K+V V CG + A+ D L+ G NQL
Sbjct: 336 EKPTIVKKLTE------KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQL 378
Score = 127 bits (321), Expect = 9e-35
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 11/151 (7%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNG--SRGQLGYPSSGTDANMEPREIRALSGLGVVQI 88
I+ G H L ++G VF+WG+ S G +G D N + I + G I
Sbjct: 129 ALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGL---TIDGN-KRTPIDLMEGTVCCSI 184
Query: 89 SAGGWHSAARTQDGFLYAWGWNNGGQVG----VEGKLDLVVHDPHPMSWSEDFDSQNIKV 144
++G H T G ++ G GQ+G + + ++ ++
Sbjct: 185 ASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPF 244
Query: 145 VDVACGSRHTLALCDDNS-LWGCGWNEYNQL 174
+ + T +W G N + QL
Sbjct: 245 EAIWATNYCTFMRESQTQVIWATGLNNFKQL 275
Score = 123 bits (310), Expect = 4e-33
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
+ IA G H + LT + G G+LG D +P ++ L+ +V +
Sbjct: 296 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDV-KDVVEKPTIVKKLTE-KIVSVGC 353
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
G S A T DG LY+WG Q+GV D +P + ++Q ++ + G
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD--ELEPIVVVSK---NTQGKHMLLASGG 408
Query: 151 SRHTLALCDDN 161
+H + L +
Sbjct: 409 GQHAIFLVKAD 419
Score = 95.1 bits (237), Expect = 6e-23
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 14/121 (11%)
Query: 54 GNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGG 113
G+ R L + N + +I+ RT G + G + G
Sbjct: 1 GSPRRKALT------NNNNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVG 54
Query: 114 QVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQ 173
Q+G+ G+ L P++ D VD++ G H L L ++ G N+
Sbjct: 55 QLGL-GEDILERKRLSPVAGIPD-------AVDISAGGMHNLVLTKSGDIYSFGCNDEGA 106
Query: 174 L 174
L
Sbjct: 107 L 107
Score = 46.2 bits (110), Expect = 4e-06
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 143 KVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
K +A ++ CG + QL +G + + ++ ++
Sbjct: 25 KRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAV 78
Score = 29.2 bits (66), Expect = 1.2
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 25 HFLDLVVTDIACGFDHCLALTQEG 48
+ + + G H + L +
Sbjct: 396 NTQGKHMLLASGGGQHAIFLVKAD 419
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 105 bits (263), Expect = 2e-27
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 36/155 (23%)
Query: 30 VVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQIS 89
VT + G LA+ G V +WG+ GQ P+ GV ++
Sbjct: 142 GVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQS--------------GVDDVA 186
Query: 90 AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVAC 149
G +HS A DG + AWG N Q V P V +A
Sbjct: 187 GGIFHSLALK-DGKVIAWGDNRYKQTTV------------PTEALSG-------VSAIAS 226
Query: 150 GSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVS 184
G ++LAL + + G + S+ GVS +
Sbjct: 227 GEWYSLAL-KNGKVIAWGSSRTAPSSVQSGVSSIE 260
Score = 103 bits (260), Expect = 6e-27
Identities = 41/147 (27%), Positives = 55/147 (37%), Gaps = 36/147 (24%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V IA G+ H LAL G V WG GQL P++ GV I+A
Sbjct: 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQS--------------GVDAIAA 70
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
G +HS A DG + AWG N GQ V + V +A G
Sbjct: 71 GNYHSLALK-DGEVIAWGGNEDGQTTVPAEA-------------------RSGVDAIAAG 110
Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMG 177
+ + AL D + G + Q ++
Sbjct: 111 AWASYAL-KDGKVIAWGDDSDGQTTVP 136
Score = 102 bits (256), Expect = 2e-26
Identities = 43/158 (27%), Positives = 59/158 (37%), Gaps = 40/158 (25%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V IA G AL +G V +WG+ S GQ P+ V
Sbjct: 104 VDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEA---------------QSGVTALD 147
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
GG ++A ++G + AWG N GQ V + V DVA G
Sbjct: 148 GGVYTALAVKNGGVIAWGDNYFGQTTVPAEA-------------------QSGVDDVAGG 188
Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMG----CGVSQVS 184
H+LAL D + G N Y Q ++ GVS ++
Sbjct: 189 IFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIA 225
Score = 101 bits (253), Expect = 7e-26
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 36/145 (24%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V IA G H LAL +G V +WG GQ P+ GV I+A
Sbjct: 65 VDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEARS--------------GVDAIAA 109
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
G W S A +DG + AWG ++ GQ V + V + G
Sbjct: 110 GAWASYA-LKDGKVIAWGDDSDGQTTVPAEA-------------------QSGVTALDGG 149
Query: 151 SRHTLALCDDNSLWGCGWNEYNQLS 175
LA+ + + G N + Q +
Sbjct: 150 VYTALAV-KNGGVIAWGDNYFGQTT 173
Score = 89.3 bits (222), Expect = 2e-21
Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 42/143 (29%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V D+A G H LAL +G V +WG+ Q P+ GV I++
Sbjct: 182 VDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTVPTEALS--------------GVSAIAS 226
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
G W+S A +G + AWG + V+ V + G
Sbjct: 227 GEWYSLALK-NGKVIAWGSSRTAPSSVQS-----------------------GVSSIEAG 262
Query: 151 SRHTLALCDDNSLWGCGWNEYNQ 173
AL + G G + ++
Sbjct: 263 PNAAYALKGGS---GSGHHHHHH 282
Score = 84.3 bits (209), Expect = 1e-19
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 38/141 (26%)
Query: 48 GIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAW 107
V +WG + + A + GV I+ G +H A G + W
Sbjct: 2 TSVVAWGGNNDWGEA-------------TVPAEAQSGVDAIAGGYFHGLALK-GGKVLGW 47
Query: 108 GWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCG 167
G N GQ+ + V +A G+ H+LAL D + G
Sbjct: 48 GANLNGQLTMPAATQS-------------------GVDAIAAGNYHSLAL-KDGEVIAWG 87
Query: 168 WNEYNQLSMGC----GVSQVS 184
NE Q ++ GV ++
Sbjct: 88 GNEDGQTTVPAEARSGVDAIA 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.69
Identities = 47/295 (15%), Positives = 77/295 (26%), Gaps = 131/295 (44%)
Query: 3 DHLA----SGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDH--------CLALTQEGIV 50
D+L S PL + Q + H+ VVT GF +G+V
Sbjct: 229 DYLLSIPISCPLIGVIQ-------LAHY---VVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 51 F--------SWGN---------------GSRGQLGYPSSGTDANMEPREIRALSGLGVVQ 87
SW + G R YP++ ++ P +++
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT----SLPPS---------ILE 325
Query: 88 ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPM-SWSEDFDSQNIKVVD 146
S N EG P PM S S Q V+
Sbjct: 326 DS-------------------LENN-----EGV-------PSPMLSISNLTQEQVQDYVN 354
Query: 147 VAC----GSRH-TLALC--DDN--------SLWG-CGWNEYNQLSMGCGVSQV------- 183
+ ++L N SL+G + G S++
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 184 SVMTR---LSVPEHVKNCPI----VKLFAEH-------WNSARLSVP-EHAKDSS 223
R ++ P H + L + +N+ + +P D S
Sbjct: 415 KFSNRFLPVASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 27.3 bits (60), Expect = 6.3
Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 29/104 (27%)
Query: 1 MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSR-G 59
+ S +++ + +P + + T H L F G S G
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKAT-------HIL-------DFGPGGASGLG 513
Query: 60 QLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGF 103
L T N + G GV I AG GF
Sbjct: 514 VL------THRNKD--------GTGVRVIVAGTLDINPDDDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 2.9
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 37/133 (27%)
Query: 138 DSQNIKVVDVA-CGSRHTLAL--CDDNSL-----WGCGWNEYNQLSMGCGVSQVSVMTRL 189
++N+ + V G + +AL C + + W L++ S +V+ L
Sbjct: 149 PAKNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFKIFW-----LNLKNCNSPETVLEML 202
Query: 190 ------------SVPEHVKNCPIVKLFAEHWNSARLSVPEHAK---------DSSIVKLF 228
S +H N + + L + ++ F
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 229 AGHWNSGILVQSQ 241
IL+ ++
Sbjct: 263 NLS--CKILLTTR 273
Score = 27.9 bits (61), Expect = 3.6
Identities = 38/256 (14%), Positives = 75/256 (29%), Gaps = 84/256 (32%)
Query: 2 CDHLASGPLKM------LSQVFHMPSRMDHFLDLVVTD------IACGFD-HC--LALTQ 46
DH ++ L++ L ++ + L+V F+ C L T+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 47 EGIVFSWGNGSRGQ---LGYPSSG---------------TDANMEPREIRALSGLGVVQI 88
V + + + L + S PRE+ + + I
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 89 SAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVH------DPHPMSWSEDFDSQNI 142
A +DG W+N V + KL ++ +P + FD ++
Sbjct: 334 -------AESIRDGLAT---WDNWKHVNCD-KLTTIIESSLNVLEPAEY--RKMFDRLSV 380
Query: 143 --KVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPI 200
+ L+L +W ++ M V+ +L H
Sbjct: 381 FPPSAHI---PTILLSL-----IW---FDVIKSDVM-------VVVNKL----HKY---- 414
Query: 201 VKLFAEHWNSARLSVP 216
L + + +S+P
Sbjct: 415 -SLVEKQPKESTISIP 429
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 27.8 bits (61), Expect = 3.9
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 93 WHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSR 152
HSA DG + G GV +++++ + + ++ + +
Sbjct: 492 RHSACSLPDGNVLILG-------GVTEGPAMLLYNVTEEIFKD-VTPKDEFFQNSLVSAG 543
Query: 153 HTLALCDDNSLW-GCGWNEYNQLS 175
+ G G+ + +S
Sbjct: 544 LEFDPVSKQGIILGGGFMDQTTVS 567
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 26.8 bits (60), Expect = 4.9
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 122 DLVVHDP--HPMSWSEDFDSQNIKVVDVACGS-RHTLALCDDN 161
D+ + +P + W+ F + N ++V G + + N
Sbjct: 18 DIAISNPADYKGKWNTVFGNDNPIHIEVGTGKGQFISGMAKQN 60
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 26.9 bits (59), Expect = 6.4
Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 143 KVVDVACGS-RHTLAL 157
+V+DVACG+ ++ L
Sbjct: 60 RVLDVACGTGVDSIML 75
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 26.6 bits (59), Expect = 8.1
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 121 LDLVVHDPHPMSWSEDFDSQNIKVVDVACGS-RHTLAL 157
L P E ++ D+ CG + L
Sbjct: 27 LTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVEL 64
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 26.2 bits (58), Expect = 9.6
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 120 KLDLVVHDPHPMSWSEDFDSQNIKVVDVACGS-RHTLALCDDN 161
+D P+ + ++ + + D+ CG + L
Sbjct: 29 DMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAF 71
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 26.3 bits (58), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 143 KVVDVACGS-RHTLALCD 159
+V+D+ACG+ TL L +
Sbjct: 44 RVLDLACGTGIPTLELAE 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.445
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,778,592
Number of extensions: 216865
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 66
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)