RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1607
(241 letters)
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 77.9 bits (190), Expect = 3e-17
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Query: 40 HCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAART 99
H T+ G+V + G G GQLG + + +P + VVQ AGG H+ +
Sbjct: 7 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERK-KPALVSIPED--VVQAEAGGMHTVCLS 63
Query: 100 QDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCD 159
+ G +Y++G N+ G +G + ++ P + E + A +
Sbjct: 64 KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 123
Query: 160 DNSLWGCGW 168
+ G
Sbjct: 124 GSFRDNNGV 132
Score = 74.8 bits (182), Expect = 3e-16
Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 8/162 (4%)
Query: 1 MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQ 60
+ ++ G S + G H + + EG +S G G+
Sbjct: 246 LSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGR 305
Query: 61 LGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGK 120
LG + ++ P I L V ++ G A T+DG ++AWG Q+G
Sbjct: 306 LGLGEGAEEKSI-PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD 362
Query: 121 LDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNS 162
D P M +N V+ V+ G +HT+ L D
Sbjct: 363 ED--AWSPVEMMGK---QLENRVVLSVSSGGQHTVLLVKDKE 399
Score = 68.3 bits (165), Expect = 6e-14
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 10/205 (4%)
Query: 7 SGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSS 66
G ++L M + D CG A++ EG V+ +G + QLG P +
Sbjct: 198 QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGT 257
Query: 67 GTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVH 126
+ + S V S G H+ +G Y+ G G++G+ G+
Sbjct: 258 ESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGL-GEGAEEKS 316
Query: 127 DPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVM 186
P +S V VACG+ A+ D ++ G QL G G + +
Sbjct: 317 IPTLISRLP-------AVSSVACGASVGYAVTKDGRVFAWGMGTNYQL--GTGQDEDAWS 367
Query: 187 TRLSVPEHVKNCPIVKLFAEHWNSA 211
+ + ++N ++ + + ++
Sbjct: 368 PVEMMGKQLENRVVLSVSSGGQHTV 392
Score = 62.9 bits (151), Expect = 3e-12
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 94 HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRH 153
H + T+ G + G + GQ+G+ G+ + P +S ED VV G H
Sbjct: 7 HRSHSTEPGLVLTLGQGDVGQLGL-GENVMERKKPALVSIPED-------VVQAEAGGMH 58
Query: 154 TLALCDDNSLWGCGWNEYNQL 174
T+ L ++ G N+ L
Sbjct: 59 TVCLSKSGQVYSFGCNDEGAL 79
Score = 53.7 bits (127), Expect = 5e-09
Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 8/172 (4%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
V G H + L++ G V+S+G G LG +S + M P ++ + V
Sbjct: 49 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGD 108
Query: 91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
+ FL+ +N G +G + +P S ++ VV VA G
Sbjct: 109 SHTAALTDDGRVFLWGSFRDNNGVIG--------LLEPMKKSMVPVQVQLDVPVVKVASG 160
Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVK 202
+ H + L D L+ G E QL + + V C ++K
Sbjct: 161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 212
Score = 50.2 bits (118), Expect = 7e-08
Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 19/210 (9%)
Query: 1 MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQ 60
+G + +L + + LD+ V +A G DH + LT +G +++ G G +GQ
Sbjct: 124 GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 183
Query: 61 LGYPSSGTDAN--------------MEPREIRALSGLGVVQISAGGWHSAARTQDGFLYA 106
LG + + + + G + + A + +G +Y
Sbjct: 184 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG 243
Query: 107 WGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGC 166
+G +N Q+G G F + V + G HT+ + + +
Sbjct: 244 FGLSNYHQLGTPGT-----ESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 298
Query: 167 GWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
G EY +L +G G + S+ T +S V
Sbjct: 299 GRAEYGRLGLGEGAEEKSIPTLISRLPAVS 328
Score = 34.8 bits (78), Expect = 0.008
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 150 GSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
H + + G + QL +G V + +S+PE V
Sbjct: 4 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVV 50
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
{Streptomyces exfoliatus [TaxId: 1905]}
Length = 273
Score = 49.0 bits (115), Expect = 1e-07
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 15/95 (15%)
Query: 34 IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW 93
G ++G V +WG+ Q P+ GV I++G W
Sbjct: 186 DVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALS--------------GVSAIASGEW 231
Query: 94 HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDP 128
+S A +G + AWG + V+ + + P
Sbjct: 232 YSLALK-NGKVIAWGSSRTAPSSVQSGVSSIEAGP 265
Score = 43.6 bits (101), Expect = 7e-06
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 87 QISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVD 146
AGG + +DG + AWG N Q V + V
Sbjct: 185 DDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALS-------------------GVSA 225
Query: 147 VACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVS 184
+A G ++LAL + + G + S+ GVS +
Sbjct: 226 IASGEWYSLAL-KNGKVIAWGSSRTAPSSVQSGVSSIE 262
Score = 39.0 bits (89), Expect = 2e-04
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSG 82
V+ IA G + LAL G V +WG+ S + P AL G
Sbjct: 223 VSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG 273
Score = 37.0 bits (84), Expect = 0.001
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 50 VFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGW 109
V +WG + + A + GV I+ G +H A + G + WG
Sbjct: 6 VVAWGGNNDWG-------------EATVPAEAQSGVDAIAGGYFHGLA-LKGGKVLGWGA 51
Query: 110 NNGGQVGV 117
N GQ+ +
Sbjct: 52 NLNGQLTM 59
Score = 35.5 bits (80), Expect = 0.004
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 21/79 (26%)
Query: 101 DGFLYAWGWNN-GGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCD 159
+ AWG NN G+ V + V +A G H LAL
Sbjct: 3 ATSVVAWGGNNDWGEATVPAEA-------------------QSGVDAIAGGYFHGLAL-K 42
Query: 160 DNSLWGCGWNEYNQLSMGC 178
+ G G N QL+M
Sbjct: 43 GGKVLGWGANLNGQLTMPA 61
Score = 35.1 bits (79), Expect = 0.005
Identities = 36/216 (16%), Positives = 65/216 (30%), Gaps = 16/216 (7%)
Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPS---------SGTDANMEPREIRALS 81
V IA G+ H LAL G V WG GQL P+ + + + + +
Sbjct: 28 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVI 86
Query: 82 GLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQN 141
G + + AR+ + A W + V+ ++
Sbjct: 87 AWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKD-----GKVIAWGDDSDGQTTVPAEA 141
Query: 142 IKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIV 201
V G +T + + G N + Q ++ + +
Sbjct: 142 QSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGK 201
Query: 202 KLFAEHWNSARLSVPEHAKDSSIVKLFAGHWNSGIL 237
+ + +VP A S + + +G W S L
Sbjct: 202 VIAWGDNRYKQTTVPTEA-LSGVSAIASGEWYSLAL 236
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Bacillus subtilis [TaxId: 1423]}
Length = 204
Score = 30.2 bits (67), Expect = 0.17
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 122 DLVVHDPHPM--SWSEDFDSQNIKVVDVACGS-RHTLALCDDN 161
D+ + +P W+ F + N ++V G + + N
Sbjct: 9 DIAISNPADYKGKWNTVFGNDNPIHIEVGTGKGQFISGMAKQN 51
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 27.5 bits (60), Expect = 1.1
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 122 DLVVHDP--HPMSWSEDFDSQNIKVVDVACGS-RHTLALCDDN 161
VV +P W + F + N V+V G + N
Sbjct: 11 QYVVLNPLEAKAKWRDLFGNDNPIHVEVGSGKGAFVSGMAKQN 53
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 26.5 bits (58), Expect = 2.7
Identities = 17/138 (12%), Positives = 38/138 (27%), Gaps = 9/138 (6%)
Query: 71 NMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYA--WGWNNGGQVGVEGKLDLVVHDP 128
L G V ++ G+ A + + +G +D+V++
Sbjct: 73 CYVKLAREELEGTDVKVVTVVGFPLGANETRTKAHEAIFAVESGADE-----IDMVINVG 127
Query: 129 HPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTR 188
+ ++ ++I+ V + + + + L +S G V T
Sbjct: 128 MLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTG 187
Query: 189 LSVPEHVKNCPIVKLFAE 206
V L
Sbjct: 188 FGTGGA--TAEDVHLMKW 203
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.445
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 947,966
Number of extensions: 41454
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 23
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)