Query psy16071
Match_columns 225
No_of_seqs 132 out of 1357
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 20:08:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00330 acetyltransferase; Pr 99.7 1.8E-16 3.9E-21 114.6 16.8 134 10-191 5-140 (147)
2 PRK10146 aminoalkylphosphonic 99.7 5.2E-17 1.1E-21 117.0 13.4 130 11-190 3-136 (144)
3 PF13527 Acetyltransf_9: Acety 99.7 4.4E-17 9.6E-22 114.9 12.1 126 13-190 1-127 (127)
4 TIGR02382 wecD_rffC TDP-D-fuco 99.7 1.4E-16 3.1E-21 120.3 12.8 140 10-193 42-186 (191)
5 TIGR03827 GNAT_ablB putative b 99.7 5.2E-16 1.1E-20 123.0 15.6 138 8-198 112-251 (266)
6 KOG3139|consensus 99.7 9.8E-16 2.1E-20 108.0 14.9 91 65-193 55-147 (165)
7 PRK10975 TDP-fucosamine acetyl 99.7 6.8E-16 1.5E-20 116.9 15.2 140 11-194 46-190 (194)
8 PRK03624 putative acetyltransf 99.7 2.2E-15 4.8E-20 107.6 16.0 132 11-199 2-137 (140)
9 TIGR02406 ectoine_EctA L-2,4-d 99.7 7.7E-16 1.7E-20 112.6 13.1 134 14-200 1-136 (157)
10 PHA00673 acetyltransferase dom 99.7 1.2E-15 2.7E-20 109.1 13.4 137 15-195 10-149 (154)
11 PLN02706 glucosamine 6-phospha 99.7 2.6E-15 5.6E-20 109.0 15.2 134 10-191 5-143 (150)
12 KOG3216|consensus 99.7 8.8E-16 1.9E-20 107.1 11.6 139 10-192 2-146 (163)
13 COG1247 Sortase and related ac 99.7 3.3E-15 7.1E-20 108.4 14.7 145 12-198 2-149 (169)
14 PF13420 Acetyltransf_4: Acety 99.6 1.5E-14 3.3E-19 105.4 15.7 140 14-198 1-145 (155)
15 PF13523 Acetyltransf_8: Acety 99.6 7E-15 1.5E-19 107.0 13.3 139 14-196 1-145 (152)
16 PRK07922 N-acetylglutamate syn 99.6 7E-15 1.5E-19 108.8 13.0 127 9-194 3-129 (169)
17 PRK10140 putative acetyltransf 99.6 2.9E-14 6.3E-19 104.6 15.8 139 11-195 3-144 (162)
18 PF00583 Acetyltransf_1: Acety 99.6 6.9E-15 1.5E-19 95.7 10.3 59 130-188 23-83 (83)
19 PRK10514 putative acetyltransf 99.6 1.9E-14 4.1E-19 103.8 12.9 128 12-195 2-129 (145)
20 PRK09491 rimI ribosomal-protei 99.6 2.5E-14 5.4E-19 103.4 13.5 60 134-193 65-126 (146)
21 PRK07757 acetyltransferase; Pr 99.6 1.4E-14 2.9E-19 105.4 12.1 149 12-223 2-150 (152)
22 TIGR03103 trio_acet_GNAT GNAT- 99.6 6.7E-14 1.4E-18 120.9 17.6 154 8-214 79-237 (547)
23 PLN02825 amino-acid N-acetyltr 99.6 1.6E-14 3.5E-19 122.5 12.4 147 13-225 369-515 (515)
24 COG1246 ArgA N-acetylglutamate 99.6 6.7E-14 1.5E-18 98.8 12.1 122 13-192 2-123 (153)
25 PRK09831 putative acyltransfer 99.6 1.6E-14 3.5E-19 104.5 9.0 125 13-194 2-128 (147)
26 TIGR01890 N-Ac-Glu-synth amino 99.6 3.3E-14 7.2E-19 119.9 12.1 146 13-224 284-429 (429)
27 PF13673 Acetyltransf_10: Acet 99.6 1.8E-14 3.9E-19 99.9 8.7 51 135-187 67-117 (117)
28 COG3153 Predicted acetyltransf 99.6 1.3E-13 2.8E-18 100.3 12.6 129 11-194 3-133 (171)
29 PRK10809 ribosomal-protein-S5- 99.5 3.8E-13 8.3E-18 101.8 15.5 150 1-194 6-168 (194)
30 PRK10562 putative acetyltransf 99.5 1.4E-13 3E-18 99.3 11.4 126 14-195 2-128 (145)
31 PRK05279 N-acetylglutamate syn 99.5 5.8E-14 1.3E-18 118.9 10.9 147 12-224 295-441 (441)
32 TIGR03448 mycothiol_MshD mycot 99.5 4.9E-13 1.1E-17 107.5 15.0 138 9-193 147-289 (292)
33 TIGR01575 rimI ribosomal-prote 99.5 4.4E-13 9.6E-18 94.5 13.1 61 134-194 56-118 (131)
34 KOG3396|consensus 99.5 8.9E-13 1.9E-17 90.2 12.3 137 7-191 2-143 (150)
35 TIGR01686 FkbH FkbH-like domai 99.5 6E-13 1.3E-17 108.3 13.7 124 11-190 186-319 (320)
36 PF13508 Acetyltransf_7: Acety 99.5 6E-13 1.3E-17 85.9 11.0 54 132-189 26-79 (79)
37 COG0456 RimI Acetyltransferase 99.5 9.2E-13 2E-17 98.0 13.2 136 10-194 10-156 (177)
38 PRK01346 hypothetical protein; 99.5 9.4E-13 2E-17 110.8 14.3 133 10-193 5-137 (411)
39 PRK12308 bifunctional arginino 99.5 3.3E-13 7.1E-18 118.5 11.9 129 9-197 461-589 (614)
40 PRK10151 ribosomal-protein-L7/ 99.5 7.6E-12 1.7E-16 93.4 15.6 147 8-198 7-161 (179)
41 PRK15130 spermidine N1-acetylt 99.4 8.1E-12 1.8E-16 93.9 15.2 143 6-195 1-148 (186)
42 PHA01807 hypothetical protein 99.4 6.5E-12 1.4E-16 90.8 12.9 126 17-186 9-137 (153)
43 PRK10314 putative acyltransfer 99.4 2.8E-12 6.2E-17 93.2 11.1 125 14-192 9-134 (153)
44 TIGR03448 mycothiol_MshD mycot 99.4 2.3E-12 4.9E-17 103.7 11.4 124 15-192 4-128 (292)
45 PF13302 Acetyltransf_3: Acety 99.4 2.2E-11 4.9E-16 87.1 14.7 132 12-188 2-142 (142)
46 PF08445 FR47: FR47-like prote 99.3 1E-11 2.3E-16 81.2 8.7 61 134-194 23-84 (86)
47 TIGR03585 PseH pseudaminic aci 99.3 4.5E-11 9.9E-16 87.0 13.0 138 13-198 2-144 (156)
48 PRK13688 hypothetical protein; 99.3 1.6E-11 3.5E-16 89.2 10.4 58 130-193 77-134 (156)
49 cd02169 Citrate_lyase_ligase C 99.3 1.8E-11 4E-16 97.7 10.6 59 134-193 27-85 (297)
50 KOG3235|consensus 99.3 2.7E-11 5.7E-16 85.2 8.9 129 12-192 2-135 (193)
51 COG3393 Predicted acetyltransf 99.2 1.6E-10 3.4E-15 88.5 11.4 64 132-195 201-265 (268)
52 KOG3234|consensus 99.1 6.4E-10 1.4E-14 78.3 9.1 91 65-193 40-132 (173)
53 KOG3138|consensus 99.1 5.8E-10 1.3E-14 82.2 8.6 65 132-196 89-156 (187)
54 TIGR00124 cit_ly_ligase [citra 99.1 1.1E-09 2.4E-14 88.9 10.9 59 135-194 53-111 (332)
55 KOG4144|consensus 99.0 1.6E-10 3.4E-15 80.9 3.1 144 10-192 10-161 (190)
56 COG2153 ElaA Predicted acyltra 99.0 4.7E-09 1E-13 73.1 9.3 63 133-195 77-139 (155)
57 COG3981 Predicted acetyltransf 99.0 3.4E-08 7.4E-13 71.0 13.7 144 11-195 3-162 (174)
58 KOG3397|consensus 98.9 1.6E-08 3.4E-13 72.5 9.6 67 129-197 80-146 (225)
59 PF13718 GNAT_acetyltr_2: GNAT 98.9 7.8E-08 1.7E-12 71.8 13.2 73 130-205 88-186 (196)
60 KOG2488|consensus 98.8 1.5E-08 3.3E-13 73.7 7.4 65 130-194 118-184 (202)
61 PF12746 GNAT_acetyltran: GNAT 98.8 8.8E-08 1.9E-12 75.1 12.2 63 137-200 193-255 (265)
62 TIGR01211 ELP3 histone acetylt 98.8 4.9E-08 1.1E-12 83.7 10.8 52 140-192 465-516 (522)
63 COG1670 RimL Acetyltransferase 98.7 6.3E-07 1.4E-11 66.6 12.0 62 137-198 100-164 (187)
64 PF14542 Acetyltransf_CG: GCN5 98.6 5.1E-07 1.1E-11 57.7 8.2 52 131-185 21-72 (78)
65 cd04301 NAT_SF N-Acyltransfera 98.6 5.1E-07 1.1E-11 54.4 7.8 41 131-171 24-64 (65)
66 PF08444 Gly_acyl_tr_C: Aralky 98.5 1.9E-07 4.2E-12 60.2 4.6 58 133-190 20-78 (89)
67 COG1444 Predicted P-loop ATPas 98.4 7.6E-06 1.7E-10 72.4 12.5 72 132-207 531-603 (758)
68 COG3818 Predicted acetyltransf 98.3 5.1E-06 1.1E-10 57.0 8.2 73 123-197 77-153 (167)
69 COG4552 Eis Predicted acetyltr 98.3 5.5E-06 1.2E-10 66.3 8.6 64 132-198 70-133 (389)
70 COG0454 WecD Histone acetyltra 98.2 3.1E-06 6.6E-11 57.4 5.0 44 138-187 87-130 (156)
71 COG2388 Predicted acetyltransf 98.1 1.7E-05 3.6E-10 52.6 6.7 43 131-174 38-80 (99)
72 PF12568 DUF3749: Acetyltransf 98.0 0.00037 7.9E-09 48.2 11.9 56 132-189 61-122 (128)
73 PF06852 DUF1248: Protein of u 97.9 0.00048 1E-08 51.0 11.6 67 130-198 76-144 (181)
74 COG3375 Uncharacterized conser 97.8 0.0007 1.5E-08 51.1 12.0 124 13-187 4-132 (266)
75 PF13480 Acetyltransf_6: Acety 97.8 0.001 2.3E-08 47.0 12.3 113 11-171 19-133 (142)
76 PF01233 NMT: Myristoyl-CoA:pr 97.8 0.00058 1.3E-08 49.0 10.4 117 9-168 21-146 (162)
77 KOG4135|consensus 97.7 0.00021 4.5E-09 50.3 6.9 63 133-195 108-173 (185)
78 COG3053 CitC Citrate lyase syn 97.6 0.0027 5.9E-08 49.9 12.7 59 135-194 59-117 (352)
79 PF04958 AstA: Arginine N-succ 97.1 0.02 4.3E-07 46.7 12.5 156 12-187 2-183 (342)
80 PRK13834 putative autoinducer 97.1 0.031 6.6E-07 42.7 12.9 60 129-189 96-162 (207)
81 PF13880 Acetyltransf_13: ESCO 97.0 0.0014 3E-08 40.5 3.8 53 132-185 5-61 (70)
82 PF00765 Autoind_synth: Autoin 96.9 0.033 7.1E-07 41.6 11.6 60 130-190 88-153 (182)
83 PRK10456 arginine succinyltran 96.9 0.0073 1.6E-07 49.1 8.5 133 12-161 2-148 (344)
84 COG1243 ELP3 Histone acetyltra 96.8 0.0019 4.2E-08 53.9 4.6 50 141-191 459-508 (515)
85 TIGR03243 arg_catab_AOST argin 96.6 0.012 2.6E-07 47.7 7.8 131 14-161 2-146 (335)
86 TIGR03245 arg_AOST_alph argini 96.5 0.016 3.4E-07 47.0 7.8 131 14-161 2-147 (336)
87 TIGR03244 arg_catab_AstA argin 96.5 0.015 3.3E-07 47.2 7.7 131 14-161 2-146 (336)
88 TIGR03694 exosort_acyl putativ 96.3 0.024 5.2E-07 44.4 7.8 72 130-206 109-208 (241)
89 COG3882 FkbH Predicted enzyme 96.3 0.015 3.3E-07 49.1 6.7 133 11-198 413-555 (574)
90 KOG2779|consensus 96.2 0.02 4.2E-07 46.4 6.9 67 131-197 166-238 (421)
91 PF05301 Mec-17: Touch recepto 96.2 0.01 2.2E-07 40.5 4.2 56 131-187 45-101 (120)
92 COG5628 Predicted acetyltransf 96.0 0.059 1.3E-06 36.7 7.2 51 135-187 68-118 (143)
93 KOG2535|consensus 95.9 0.01 2.3E-07 47.9 4.0 49 142-191 497-546 (554)
94 PF09390 DUF1999: Protein of u 95.7 0.42 9E-06 33.7 10.7 140 12-191 1-140 (161)
95 COG2401 ABC-type ATPase fused 95.6 0.002 4.4E-08 53.5 -1.0 59 133-191 242-307 (593)
96 PF01853 MOZ_SAS: MOZ/SAS fami 95.3 0.042 9.1E-07 40.9 5.1 34 135-168 83-116 (188)
97 COG3916 LasI N-acyl-L-homoseri 95.2 0.99 2.1E-05 34.2 12.6 60 130-190 96-161 (209)
98 TIGR03019 pepcterm_femAB FemAB 94.5 1.2 2.6E-05 36.6 12.1 128 10-191 150-280 (330)
99 KOG3698|consensus 93.8 0.53 1.1E-05 40.9 8.6 177 8-192 676-878 (891)
100 PF04377 ATE_C: Arginine-tRNA- 93.7 0.58 1.3E-05 32.8 7.5 31 140-170 70-100 (128)
101 COG5092 NMT1 N-myristoyl trans 93.5 0.76 1.6E-05 36.9 8.5 144 12-198 82-237 (451)
102 KOG4601|consensus 92.8 0.14 3.1E-06 39.0 3.5 56 131-187 107-163 (264)
103 PLN03238 probable histone acet 92.4 0.11 2.4E-06 41.1 2.7 33 135-167 158-190 (290)
104 COG3138 AstA Arginine/ornithin 92.4 0.26 5.6E-06 39.0 4.5 63 13-84 3-76 (336)
105 cd04264 DUF619-NAGS DUF619 dom 92.3 0.23 5E-06 33.1 3.7 30 131-160 33-62 (99)
106 cd04265 DUF619-NAGS-U DUF619 d 92.2 0.22 4.8E-06 33.2 3.5 30 132-161 34-63 (99)
107 PRK01305 arginyl-tRNA-protein 92.1 4.7 0.0001 31.5 12.1 33 138-170 173-205 (240)
108 PLN03239 histone acetyltransfe 91.4 0.14 3.1E-06 41.7 2.2 33 135-167 216-248 (351)
109 PF13444 Acetyltransf_5: Acety 90.0 0.69 1.5E-05 30.8 4.3 25 130-154 76-100 (101)
110 KOG2036|consensus 90.0 0.3 6.6E-06 43.5 3.1 30 133-162 615-644 (1011)
111 PTZ00064 histone acetyltransfe 89.3 0.25 5.4E-06 42.2 2.0 33 135-167 387-419 (552)
112 PRK14852 hypothetical protein; 88.5 1.3 2.8E-05 41.5 6.1 70 130-200 119-189 (989)
113 PF12261 T_hemolysin: Thermost 87.7 7.2 0.00016 29.0 8.6 58 128-190 83-140 (179)
114 TIGR03827 GNAT_ablB putative b 86.3 2.5 5.5E-05 33.5 6.1 47 147-194 20-66 (266)
115 PLN00104 MYST -like histone ac 86.3 0.28 6.1E-06 41.5 0.7 33 135-167 309-341 (450)
116 PHA02769 hypothetical protein; 85.3 0.82 1.8E-05 30.9 2.4 48 150-197 94-144 (154)
117 PF04768 DUF619: Protein of un 84.4 12 0.00026 27.6 8.4 54 131-188 87-142 (170)
118 PF02474 NodA: Nodulation prot 84.1 4 8.6E-05 30.0 5.5 53 132-186 85-137 (196)
119 KOG2747|consensus 83.9 0.56 1.2E-05 39.0 1.4 32 135-166 263-294 (396)
120 PF11124 Pho86: Inorganic phos 82.0 26 0.00055 28.4 10.9 69 131-199 198-279 (304)
121 PF02799 NMT_C: Myristoyl-CoA: 81.8 3 6.5E-05 31.3 4.3 137 14-198 31-172 (190)
122 PF00925 GTP_cyclohydro2: GTP 81.3 13 0.00028 27.4 7.6 58 138-195 85-169 (169)
123 COG5630 ARG2 Acetylglutamate s 80.4 3.7 7.9E-05 34.1 4.7 66 131-198 399-466 (495)
124 COG2994 HlyC ACP:hemolysin acy 79.1 8.9 0.00019 27.1 5.6 34 52-85 38-71 (148)
125 COG2935 Putative arginyl-tRNA: 77.5 13 0.00029 29.0 6.7 34 138-171 180-213 (253)
126 KOG2696|consensus 77.2 3.7 8E-05 33.9 3.8 38 135-172 220-258 (403)
127 KOG2779|consensus 76.4 38 0.00082 28.2 9.2 139 14-198 263-404 (421)
128 PF04339 DUF482: Protein of un 75.4 7.6 0.00016 32.5 5.4 57 137-193 105-161 (370)
129 COG2898 Uncharacterized conser 71.6 49 0.0011 29.3 9.4 37 133-170 419-455 (538)
130 COG1212 KdsB CMP-2-keto-3-deox 66.5 18 0.00038 28.1 5.1 43 150-192 27-69 (247)
131 PF04339 DUF482: Protein of un 63.7 90 0.0019 26.3 10.3 43 152-199 293-336 (370)
132 PF08901 DUF1847: Protein of u 61.0 28 0.0006 25.3 5.0 40 154-193 43-88 (157)
133 PRK00756 acyltransferase NodA; 59.6 20 0.00044 26.2 4.2 38 132-170 85-122 (196)
134 TIGR02990 ectoine_eutA ectoine 57.9 31 0.00067 27.0 5.3 46 152-197 106-156 (239)
135 COG3473 Maleate cis-trans isom 57.4 37 0.0008 26.1 5.3 43 156-198 108-155 (238)
136 COG0807 RibA GTP cyclohydrolas 57.1 30 0.00066 26.1 4.9 54 139-199 121-174 (193)
137 PF00411 Ribosomal_S11: Riboso 56.9 59 0.0013 22.0 7.0 56 150-207 45-105 (110)
138 cd07235 MRD Mitomycin C resist 55.6 19 0.00041 24.1 3.5 17 175-191 11-27 (122)
139 PRK09319 bifunctional 3,4-dihy 54.7 82 0.0018 28.0 7.8 39 158-196 343-381 (555)
140 PRK02983 lysS lysyl-tRNA synth 54.1 1.4E+02 0.0029 29.3 9.7 37 133-170 446-482 (1094)
141 COG3640 CooC CO dehydrogenase 54.0 1.1E+02 0.0023 24.2 9.1 63 133-199 156-223 (255)
142 cd08353 Glo_EDI_BRP_like_7 Thi 52.6 19 0.00042 24.9 3.3 27 168-194 6-33 (142)
143 PF05063 MT-A70: MT-A70 ; Int 51.3 71 0.0015 23.5 6.2 52 169-222 48-110 (176)
144 PRK14019 bifunctional 3,4-dihy 51.1 74 0.0016 26.8 6.8 38 158-196 328-365 (367)
145 PRK13260 2,3-diketo-L-gulonate 48.6 82 0.0018 26.1 6.6 67 147-213 87-158 (332)
146 cd08358 Glo_EDI_BRP_like_21 Th 48.1 47 0.001 23.1 4.5 24 174-197 12-36 (127)
147 cd04266 DUF619-NAGS-FABP DUF61 47.8 43 0.00092 22.7 4.1 29 131-159 38-67 (108)
148 PF09924 DUF2156: Uncharacteri 47.8 1.2E+02 0.0026 24.3 7.6 107 12-170 133-243 (299)
149 PF03465 eRF1_3: eRF1 domain 3 47.7 42 0.0009 22.8 4.1 34 153-186 70-103 (113)
150 COG5027 SAS2 Histone acetyltra 47.2 2.8 6.1E-05 34.3 -1.9 30 135-164 265-294 (395)
151 TIGR00505 ribA GTP cyclohydrol 46.8 65 0.0014 24.2 5.4 49 141-196 121-169 (191)
152 PRK09318 bifunctional 3,4-dihy 46.3 51 0.0011 27.9 5.1 38 159-196 321-358 (387)
153 PRK00393 ribA GTP cyclohydrola 46.3 67 0.0014 24.3 5.4 49 141-196 124-172 (197)
154 PF12953 DUF3842: Domain of un 46.1 49 0.0011 23.2 4.2 44 143-188 6-49 (131)
155 PRK04531 acetylglutamate kinas 45.6 1.9E+02 0.0042 24.6 8.6 30 133-162 311-340 (398)
156 PF11090 DUF2833: Protein of u 44.7 77 0.0017 20.5 4.6 22 170-191 62-83 (86)
157 PRK08815 GTP cyclohydrolase; P 44.7 1.6E+02 0.0035 24.8 7.8 38 159-196 306-343 (375)
158 cd08344 MhqB_like_N N-terminal 44.0 41 0.00089 22.2 3.7 28 166-193 3-31 (112)
159 PRK12485 bifunctional 3,4-dihy 43.4 1.4E+02 0.003 25.2 7.2 39 157-196 330-368 (369)
160 COG2055 Malate/L-lactate dehyd 43.3 1.4E+02 0.003 24.9 7.1 67 147-213 90-161 (349)
161 PF12804 NTP_transf_3: MobA-li 42.7 31 0.00068 24.5 3.1 43 150-192 23-65 (160)
162 TIGR03175 AllD ureidoglycolate 42.5 92 0.002 26.0 6.0 67 147-213 87-158 (349)
163 TIGR03632 bact_S11 30S ribosom 41.9 1.1E+02 0.0023 20.7 8.2 59 145-205 39-103 (108)
164 PRK09311 bifunctional 3,4-dihy 41.9 1.8E+02 0.0038 24.9 7.7 39 158-196 339-377 (402)
165 PRK07198 hypothetical protein; 41.5 58 0.0013 27.6 4.7 51 142-199 329-380 (418)
166 cd08356 Glo_EDI_BRP_like_17 Th 41.4 26 0.00057 23.3 2.4 18 176-193 13-30 (113)
167 PLN02831 Bifunctional GTP cycl 40.8 1.9E+02 0.0041 25.2 7.8 39 158-196 373-411 (450)
168 COG4359 Uncharacterized conser 39.1 1.7E+02 0.0037 22.2 6.6 59 138-207 72-135 (220)
169 TIGR03628 arch_S11P archaeal r 39.0 1.3E+02 0.0027 20.7 7.8 49 150-198 48-109 (114)
170 PF07355 GRDB: Glycine/sarcosi 38.1 2.4E+02 0.0052 23.6 9.5 54 137-190 83-136 (349)
171 PF06574 FAD_syn: FAD syntheta 37.6 1.4E+02 0.0031 21.5 5.8 57 141-197 11-86 (157)
172 cd07267 THT_Oxygenase_N N-term 37.6 54 0.0012 21.6 3.5 17 176-192 15-31 (113)
173 PLN00105 malate/L-lactate dehy 37.2 1.2E+02 0.0027 25.0 6.0 67 147-213 76-148 (330)
174 PF03376 Adeno_E3B: Adenovirus 35.4 18 0.00038 21.8 0.6 14 140-153 52-65 (67)
175 cd08350 BLMT_like BLMT, a bleo 35.2 40 0.00087 22.5 2.6 20 175-194 13-32 (120)
176 PF03460 NIR_SIR_ferr: Nitrite 34.8 32 0.0007 20.7 1.8 27 5-31 42-68 (69)
177 cd08346 PcpA_N_like N-terminal 34.6 84 0.0018 20.7 4.1 28 167-194 3-32 (126)
178 PF14871 GHL6: Hypothetical gl 32.9 67 0.0015 22.6 3.4 43 145-189 37-81 (132)
179 PF04131 NanE: Putative N-acet 32.8 2.2E+02 0.0047 21.6 6.6 60 136-200 66-125 (192)
180 cd03173 DUF619-like DUF619 dom 32.4 1.1E+02 0.0024 20.3 4.1 29 132-160 33-61 (98)
181 PRK09607 rps11p 30S ribosomal 32.4 1.8E+02 0.0039 20.5 8.1 55 150-206 55-122 (132)
182 cd00641 GTP_cyclohydro2 GTP cy 32.1 1.5E+02 0.0032 22.3 5.4 49 141-196 123-171 (193)
183 cd09012 Glo_EDI_BRP_like_24 Th 31.7 41 0.00088 22.6 2.1 17 175-191 11-27 (124)
184 PRK15025 ureidoglycolate dehyd 31.6 1.8E+02 0.0039 24.3 6.1 67 147-213 87-158 (349)
185 TIGR00466 kdsB 3-deoxy-D-manno 31.6 1.1E+02 0.0023 23.8 4.7 41 150-190 23-63 (238)
186 COG0100 RpsK Ribosomal protein 31.5 1.9E+02 0.004 20.4 8.5 56 152-209 65-125 (129)
187 PF02836 Glyco_hydro_2_C: Glyc 31.4 2.7E+02 0.0059 22.3 8.1 68 131-198 13-84 (298)
188 TIGR00068 glyox_I lactoylgluta 31.4 74 0.0016 22.4 3.5 32 163-194 15-48 (150)
189 cd07240 ED_TypeI_classII_N N-t 31.1 95 0.0021 20.2 3.9 26 168-193 5-32 (117)
190 PF00903 Glyoxalase: Glyoxalas 30.4 1.1E+02 0.0023 20.1 4.1 27 168-194 4-32 (128)
191 PRK10098 putative dehydrogenas 30.4 1.9E+02 0.0042 24.1 6.1 64 148-211 92-162 (350)
192 cd07253 Glo_EDI_BRP_like_2 Thi 30.2 93 0.002 20.4 3.8 29 165-193 3-33 (125)
193 cd07043 STAS_anti-anti-sigma_f 30.1 1.5E+02 0.0032 18.7 5.7 41 149-190 54-94 (99)
194 PHA01733 hypothetical protein 29.9 33 0.00072 24.8 1.4 47 152-198 89-138 (153)
195 PRK05309 30S ribosomal protein 29.9 2E+02 0.0043 20.1 8.2 56 150-207 62-122 (128)
196 TIGR00151 ispF 2C-methyl-D-ery 29.7 1.2E+02 0.0025 22.1 4.1 32 140-172 63-94 (155)
197 PHA00432 internal virion prote 29.5 1.5E+02 0.0033 21.1 4.6 23 170-192 99-121 (137)
198 KOG3014|consensus 29.3 87 0.0019 24.7 3.6 32 130-161 181-212 (257)
199 PRK13368 3-deoxy-manno-octulos 29.3 1.1E+02 0.0024 23.3 4.5 40 150-189 26-66 (238)
200 PRK06770 hypothetical protein; 29.2 19 0.00042 26.6 0.1 31 1-31 79-109 (180)
201 CHL00041 rps11 ribosomal prote 29.1 1.9E+02 0.0042 19.8 8.0 49 150-198 58-111 (116)
202 TIGR01918 various_sel_PB selen 29.0 3.8E+02 0.0082 23.1 8.8 55 137-191 79-133 (431)
203 cd08342 HPPD_N_like N-terminal 28.8 1.3E+02 0.0028 20.7 4.3 20 175-194 11-31 (136)
204 PRK10150 beta-D-glucuronidase; 28.8 3.7E+02 0.008 24.2 8.1 66 131-196 290-359 (604)
205 cd08352 Glo_EDI_BRP_like_1 Thi 28.7 1.2E+02 0.0027 19.7 4.2 28 165-192 3-32 (125)
206 cd07243 2_3_CTD_C C-terminal d 28.5 1.3E+02 0.0028 21.1 4.3 27 167-193 8-36 (143)
207 COG3010 NanE Putative N-acetyl 28.5 2.3E+02 0.005 21.8 5.6 56 135-193 99-154 (229)
208 PF14721 AIF_C: Apoptosis-indu 28.2 72 0.0016 22.3 2.7 20 69-88 102-121 (133)
209 COG5428 Uncharacterized conser 28.2 1.1E+02 0.0023 18.9 3.2 21 65-85 29-49 (69)
210 cd08362 BphC5-RrK37_N_like N-t 28.2 1.1E+02 0.0023 20.2 3.7 28 165-192 3-32 (120)
211 COG1433 Uncharacterized conser 27.8 2.1E+02 0.0045 19.8 5.0 37 157-193 57-93 (121)
212 TIGR01917 gly_red_sel_B glycin 27.8 4E+02 0.0087 23.0 8.8 54 137-190 79-132 (431)
213 PF07991 IlvN: Acetohydroxy ac 27.7 1.5E+02 0.0032 21.9 4.4 43 147-190 10-52 (165)
214 TIGR03552 F420_cofC 2-phospho- 27.4 2.5E+02 0.0055 20.6 6.0 49 143-191 22-70 (195)
215 KOG0023|consensus 27.3 86 0.0019 25.9 3.4 42 147-189 188-229 (360)
216 PF02348 CTP_transf_3: Cytidyl 27.2 1.1E+02 0.0024 22.9 4.1 40 150-189 23-63 (217)
217 TIGR03645 glyox_marine lactoyl 26.6 98 0.0021 22.2 3.5 27 165-191 4-32 (162)
218 cd07242 Glo_EDI_BRP_like_6 Thi 26.5 1.5E+02 0.0032 19.7 4.3 28 166-193 2-34 (128)
219 cd07252 BphC1-RGP6_N_like N-te 26.2 1.1E+02 0.0024 20.3 3.6 26 167-192 4-31 (120)
220 PRK13690 hypothetical protein; 25.9 2.8E+02 0.0062 20.7 5.9 47 148-195 50-102 (184)
221 cd07265 2_3_CTD_N N-terminal d 25.7 1.2E+02 0.0027 20.1 3.7 25 169-193 8-34 (122)
222 PRK05450 3-deoxy-manno-octulos 25.6 1.5E+02 0.0033 22.7 4.6 40 150-189 26-65 (245)
223 cd07244 FosA FosA, a Fosfomyci 25.5 1.8E+02 0.0038 19.3 4.5 27 166-192 2-30 (121)
224 cd08348 BphC2-C3-RGP6_C_like T 24.7 1.6E+02 0.0036 19.8 4.3 26 168-193 4-31 (134)
225 cd01027 TOPRIM_RNase_M5_like T 24.5 52 0.0011 20.8 1.5 24 136-159 48-71 (81)
226 PF00571 CBS: CBS domain CBS d 24.5 1E+02 0.0022 17.1 2.7 17 67-83 31-47 (57)
227 PF13456 RVT_3: Reverse transc 24.3 1.1E+02 0.0024 18.7 3.1 32 154-185 9-40 (87)
228 COG3607 Predicted lactoylgluta 24.2 56 0.0012 22.8 1.6 18 175-192 14-31 (133)
229 COG1658 Small primase-like pro 24.2 67 0.0015 22.5 2.1 23 137-159 59-81 (127)
230 PF00563 EAL: EAL domain; Int 24.1 2.2E+02 0.0047 21.4 5.3 43 147-189 185-227 (236)
231 TIGR00377 ant_ant_sig anti-ant 24.1 2.1E+02 0.0045 18.5 4.8 39 151-190 61-99 (108)
232 COG0826 Collagenase and relate 23.9 1.8E+02 0.0039 24.3 4.9 33 157-189 103-140 (347)
233 TIGR01440 conserved hypothetic 23.9 2.3E+02 0.005 20.9 4.8 47 148-195 43-95 (172)
234 cd01948 EAL EAL domain. This d 23.6 2.9E+02 0.0062 20.8 5.8 54 136-189 169-226 (240)
235 cd07264 Glo_EDI_BRP_like_15 Th 22.9 2E+02 0.0043 18.9 4.4 22 170-191 5-28 (125)
236 PF00107 ADH_zinc_N: Zinc-bind 22.9 2.4E+02 0.0052 18.9 4.8 34 156-190 5-38 (130)
237 COG1724 Predicted RNA binding 22.6 1.5E+02 0.0032 18.1 3.0 32 176-208 10-42 (66)
238 TIGR00055 uppS undecaprenyl di 22.4 1E+02 0.0022 24.0 3.0 32 142-173 20-51 (226)
239 cd08347 PcpA_C_like C-terminal 22.4 1.7E+02 0.0037 20.9 4.1 29 165-193 1-31 (157)
240 PRK03681 hypA hydrogenase nick 22.3 1.7E+02 0.0037 19.9 3.8 23 148-170 5-27 (114)
241 PRK11478 putative lyase; Provi 22.3 1.2E+02 0.0026 20.2 3.2 25 167-191 8-34 (129)
242 PTZ00129 40S ribosomal protein 22.3 3.1E+02 0.0067 19.8 7.9 56 150-207 74-142 (149)
243 PRK14837 undecaprenyl pyrophos 22.3 1E+02 0.0022 24.1 2.9 32 142-173 27-58 (230)
244 PF02641 DUF190: Uncharacteriz 22.1 60 0.0013 21.5 1.5 36 135-172 5-40 (101)
245 PLN02384 ribose-5-phosphate is 22.0 2.5E+02 0.0054 22.5 5.1 46 146-191 54-102 (264)
246 PRK09314 bifunctional 3,4-dihy 21.8 2.6E+02 0.0057 23.3 5.4 37 158-194 301-338 (339)
247 PLN02862 2-C-methyl-D-erythrit 21.7 1.7E+02 0.0036 22.6 3.9 33 140-173 123-155 (216)
248 COG3146 Uncharacterized protei 21.5 2.7E+02 0.0059 23.2 5.2 54 138-191 121-174 (387)
249 PF04914 DltD_C: DltD C-termin 21.4 2.2E+02 0.0048 20.0 4.3 27 140-173 31-57 (130)
250 PRK10291 glyoxalase I; Provisi 21.3 1.3E+02 0.0028 20.3 3.2 19 175-193 7-26 (129)
251 PF13862 BCIP: p21-C-terminal 21.1 3.4E+02 0.0074 20.4 5.6 59 11-84 6-68 (194)
252 COG3414 SgaB Phosphotransferas 21.0 1.8E+02 0.004 19.0 3.6 24 145-168 8-33 (93)
253 cd08364 FosX FosX, a fosfomyci 20.9 1.9E+02 0.0041 19.6 4.0 28 165-192 4-33 (131)
254 PRK08091 ribulose-phosphate 3- 20.6 4.2E+02 0.009 20.7 7.0 56 134-189 143-203 (228)
255 cd00554 MECDP_synthase MECDP_s 20.6 2E+02 0.0042 20.9 3.9 32 140-172 63-94 (153)
256 cd07263 Glo_EDI_BRP_like_16 Th 20.5 1.7E+02 0.0036 18.8 3.5 19 176-194 10-29 (119)
257 COG1242 Predicted Fe-S oxidore 20.4 4.8E+02 0.01 21.3 7.8 24 146-169 162-185 (312)
258 PF04015 DUF362: Domain of unk 20.4 1.5E+02 0.0032 22.3 3.6 44 149-192 20-67 (206)
259 cd07233 Glyoxalase_I Glyoxalas 20.3 2.6E+02 0.0056 18.1 4.7 21 175-195 11-32 (121)
260 cd02517 CMP-KDO-Synthetase CMP 20.2 2.2E+02 0.0048 21.7 4.6 40 150-189 25-65 (239)
261 PF02334 RTP: Replication term 20.2 25 0.00055 23.8 -0.6 24 144-167 28-51 (122)
262 PF01740 STAS: STAS domain; I 20.2 2.4E+02 0.0053 18.6 4.3 38 150-188 65-102 (117)
263 PF12681 Glyoxalase_2: Glyoxal 20.1 1.2E+02 0.0026 19.4 2.7 17 176-192 7-24 (108)
264 PRK15447 putative protease; Pr 20.0 2E+02 0.0044 23.3 4.4 40 160-199 102-147 (301)
No 1
>PTZ00330 acetyltransferase; Provisional
Probab=99.75 E-value=1.8e-16 Score=114.56 Aligned_cols=134 Identities=19% Similarity=0.138 Sum_probs=91.3
Q ss_pred cceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhcc-CC-eeEEEEecCCcEEEEEecccc
Q psy16071 10 EIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQ-DN-LSVMAVNGNGQVIGVALNGIQ 87 (225)
Q Consensus 10 ~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~va~~~~~~ivG~~~~~~~ 87 (225)
.++.||+++++|.+++.+++..... ..+. .......+...... .. ..+++.+.+|++||++.....
T Consensus 5 ~~~~ir~~~~~D~~~i~~l~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~ 72 (147)
T PTZ00330 5 GSLELRDLEEGDLGSVLELLSHLTS-APAL-----------SQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVE 72 (147)
T ss_pred ceEEEEEcccccHHHHHHHHHHhcC-CCcc-----------chhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEec
Confidence 3689999999999999999876431 1111 11223333322111 22 223333445899999875321
Q ss_pred cCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCc
Q psy16071 88 HEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFK 167 (225)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~ 167 (225)
..... +.....++..++|+|+|||+|||++|++++++.|+++|+.
T Consensus 73 ~~~~~-----------------------------------~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~ 117 (147)
T PTZ00330 73 PKFTR-----------------------------------GGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCY 117 (147)
T ss_pred ccccc-----------------------------------CCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 11000 1123467889999999999999999999999999999998
Q ss_pred EEEEEecCHHHHHHHHHcCCeEEE
Q psy16071 168 VFKVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 168 ~~~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
.+.+. +|..+.+||+|+||+...
T Consensus 118 ~l~l~-~n~~a~~~y~k~GF~~~~ 140 (147)
T PTZ00330 118 KVILD-CTEDMVAFYKKLGFRACE 140 (147)
T ss_pred EEEEe-cChHHHHHHHHCCCEEec
Confidence 76544 689999999999998664
No 2
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.75 E-value=5.2e-17 Score=116.98 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=89.8
Q ss_pred ceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc-cCCe-eEEEEecCCcEEEEEeccccc
Q psy16071 11 IDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL-QDNL-SVMAVNGNGQVIGVALNGIQH 88 (225)
Q Consensus 11 ~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~va~~~~~~ivG~~~~~~~~ 88 (225)
.+.||+++++|++.+.+++.+... +. + ........+...+ ..+. .+++. .++++||++......
T Consensus 3 ~~~ir~a~~~D~~~l~~l~~~~~~-~~-~-----------~~~~~~~~~~~~l~~~~~~~~v~~-~~~~ivG~~~~~~~~ 68 (144)
T PRK10146 3 ACELRPATQYDTDAVYALICELKQ-AE-F-----------DHQAFRVGFNANLRDPNMRYHLAL-LDGEVVGMIGLHLQF 68 (144)
T ss_pred ccEEeeCcHhhHHHHHHHHHHHhc-cc-C-----------CHHHHHHHHHHHhcCCCceEEEEE-ECCEEEEEEEEEecc
Confidence 578999999999999999876541 11 1 0111122222222 3333 34444 469999998753211
Q ss_pred CCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE
Q psy16071 89 EGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV 168 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~ 168 (225)
. .. ......++..++|+|+|||+|||+.|++++++.|++.|++.
T Consensus 69 ~-~~-----------------------------------~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~ 112 (144)
T PRK10146 69 H-LH-----------------------------------HVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEM 112 (144)
T ss_pred c-cc-----------------------------------ccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcE
Confidence 0 00 00112367889999999999999999999999999999998
Q ss_pred EEEEe--cCHHHHHHHHHcCCeEE
Q psy16071 169 FKVDA--TGVFSQKISTKLGLETL 190 (225)
Q Consensus 169 ~~~~~--~n~~~~~~y~k~Gf~~~ 190 (225)
+.+++ .|..+++||+|+||+..
T Consensus 113 i~l~~~~~n~~a~~fY~~~Gf~~~ 136 (144)
T PRK10146 113 TELSTNVKRHDAHRFYLREGYEQS 136 (144)
T ss_pred EEEecCCCchHHHHHHHHcCCchh
Confidence 77664 68899999999999654
No 3
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.74 E-value=4.4e-17 Score=114.92 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=90.3
Q ss_pred EEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCCh
Q psy16071 13 YVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGDV 92 (225)
Q Consensus 13 ~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~~ 92 (225)
.||+++++|.+++.+++..+|....+. .....+.......+..+++.+ +|+|||++......-.
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-~~~ivg~~~~~~~~~~-- 64 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESP-------------PEIWEYFRNLYGPGRCVVAED-DGKIVGHVGLIPRRLS-- 64 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHH-------------HHHHHHHHHHHHTTEEEEEEE-TTEEEEEEEEEEEEEE--
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCc-------------hhhhhhhhcccCcCcEEEEEE-CCEEEEEEEEEEEEEE--
Confidence 489999999999999999999432111 123334455556778888887 6999999885322110
Q ss_pred hHHHHHHhhhCChhHHHHHHHHHHhhhccccccccC-CCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE
Q psy16071 93 DEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYD-VTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~ 171 (225)
..+ .-+..++..++|+|+|||+|+|++|++.+++.++++|+..+++
T Consensus 65 ---------------------------------~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l 111 (127)
T PF13527_consen 65 ---------------------------------VGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFL 111 (127)
T ss_dssp ---------------------------------ETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred ---------------------------------ECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 001 1246789999999999999999999999999999999997665
Q ss_pred EecCHHHHHHHHHcCCeEE
Q psy16071 172 DATGVFSQKISTKLGLETL 190 (225)
Q Consensus 172 ~~~n~~~~~~y~k~Gf~~~ 190 (225)
.. .+..||+|+||+.+
T Consensus 112 ~~---~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 112 FP---SSPPFYRRFGFEYA 127 (127)
T ss_dssp E----SSHHHHHHTTEEEE
T ss_pred ec---CChhhhhcCCCEEC
Confidence 54 33689999999864
No 4
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.72 E-value=1.4e-16 Score=120.28 Aligned_cols=140 Identities=10% Similarity=0.072 Sum_probs=95.2
Q ss_pred cceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhcc---CCeeEEEEecCCcEEEEEeccc
Q psy16071 10 EIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQ---DNLSVMAVNGNGQVIGVALNGI 86 (225)
Q Consensus 10 ~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~va~~~~~~ivG~~~~~~ 86 (225)
..+.||+++++|.+++.+++.+.|.. ..... .....+.........+..... ...++++.+.+|++||++....
T Consensus 42 ~~~~lR~~~~~D~~~l~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~ 118 (191)
T TIGR02382 42 SDPGARVATETDIPALRQLASAAFAL-SRFRA--PWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRE 118 (191)
T ss_pred CCCcceeCChhhHHHHHHHHHHHhhc-cccCC--CCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEe
Confidence 35689999999999999999887631 11111 000000001112222222222 2234555555689999987532
Q ss_pred ccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCC
Q psy16071 87 QHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGF 166 (225)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~ 166 (225)
... ...++..++|+|+|||+|||++|++++++.|+++|+
T Consensus 119 ~~~-----------------------------------------~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~ 157 (191)
T TIGR02382 119 LND-----------------------------------------TDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGL 157 (191)
T ss_pred cCC-----------------------------------------CceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 210 113677889999999999999999999999999999
Q ss_pred cEEEEEe--cCHHHHHHHHHcCCeEEEEE
Q psy16071 167 KVFKVDA--TGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 167 ~~~~~~~--~n~~~~~~y~k~Gf~~~~~~ 193 (225)
..+.+.+ .|..+++||+|+||+..++.
T Consensus 158 ~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 158 TRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred CEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 9877654 79999999999999987764
No 5
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.71 E-value=5.2e-16 Score=123.05 Aligned_cols=138 Identities=18% Similarity=0.129 Sum_probs=99.4
Q ss_pred cccceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccc
Q psy16071 8 KEEIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQ 87 (225)
Q Consensus 8 ~~~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~ 87 (225)
.++.++||+++++|++++.++..+.|. ..|.. . ... .++...+..+..++++..+|++||++.....
T Consensus 112 ~~~~~~IR~a~~~D~~~l~~L~~~v~~-~~~~~--------~-~~~---~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~ 178 (266)
T TIGR03827 112 LPEGFTLRIATEDDADAMAALYRKVFP-TYPFP--------I-HDP---AYLLETMKSNVVYFGVEDGGKIIALASAEMD 178 (266)
T ss_pred CCCceEEEECCHHHHHHHHHHHHHHhc-cCCCC--------c-cCH---HHHHHHhcCCcEEEEEEECCEEEEEEEEecC
Confidence 345799999999999999999988773 11110 0 011 2233333444444333336999999874211
Q ss_pred cCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCc
Q psy16071 88 HEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFK 167 (225)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~ 167 (225)
. .....++..++|+|+|||+|||++|++++++.+++.|+.
T Consensus 179 ~----------------------------------------~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~ 218 (266)
T TIGR03827 179 P----------------------------------------ENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIR 218 (266)
T ss_pred C----------------------------------------CCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCc
Confidence 0 012367888999999999999999999999999999999
Q ss_pred EEEEEe--cCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 168 VFKVDA--TGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 168 ~~~~~~--~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
.+.+.+ .|..+.++|+|+||+..+++.-+-+
T Consensus 219 ~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~ 251 (266)
T TIGR03827 219 TAYTIARASSYGMNITFARLGYAYGGTLVNNTN 251 (266)
T ss_pred EEEeehhhcchhHHHHHHHcCCccccEEeecce
Confidence 876544 6888999999999999998864333
No 6
>KOG3139|consensus
Probab=99.71 E-value=9.8e-16 Score=108.03 Aligned_cols=91 Identities=21% Similarity=0.398 Sum_probs=74.1
Q ss_pred CCeeEEEEecCCcEEEEEecccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCc
Q psy16071 65 DNLSVMAVNGNGQVIGVALNGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNY 144 (225)
Q Consensus 65 ~~~~~va~~~~~~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~ 144 (225)
...++++.|+++..||.+.+..... .+ ....+|..|+|+++|
T Consensus 55 p~~~~~a~d~~~~~VGai~ck~~~~-------------------------------------r~-~~rgyi~mLaV~~e~ 96 (165)
T KOG3139|consen 55 PCFCFLALDEKGDTVGAIVCKLDTH-------------------------------------RN-TLRGYIAMLAVDSEY 96 (165)
T ss_pred ceEEEEEEcCCCceEEEEEEecccc-------------------------------------CC-cceEEEEEEEechhh
Confidence 3477888886655899988642211 11 234789999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHcCCcEEEEEe--cCHHHHHHHHHcCCeEEEEE
Q psy16071 145 RGRGLANELFKLSIDIASKAGFKVFKVDA--TGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 145 rg~Gig~~L~~~~~~~a~~~g~~~~~~~~--~n~~~~~~y~k~Gf~~~~~~ 193 (225)
||+|||++|++.+++.++++|+..+.+++ +|.+|++||+++||...+.+
T Consensus 97 Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~ 147 (165)
T KOG3139|consen 97 RGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRL 147 (165)
T ss_pred ccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecce
Confidence 99999999999999999999999988766 79999999999999886654
No 7
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.71 E-value=6.8e-16 Score=116.89 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=96.3
Q ss_pred ceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhcc---CCeeEEEEecCCcEEEEEecccc
Q psy16071 11 IDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQ---DNLSVMAVNGNGQVIGVALNGIQ 87 (225)
Q Consensus 11 ~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~va~~~~~~ivG~~~~~~~ 87 (225)
...||+++++|++.+.++..+.|.. ..+... .............++..... ....+++.+.+|++||++.....
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~ 122 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQ-SRFRAP--WYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLREL 122 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhh-ccccCc--cCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEec
Confidence 4679999999999999999887632 221100 00000011222233322222 22455666556899999874311
Q ss_pred cCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCc
Q psy16071 88 HEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFK 167 (225)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~ 167 (225)
. ....++..++|+|+|||+|+|++|++.+++.+++.|+.
T Consensus 123 ~-----------------------------------------~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~ 161 (194)
T PRK10975 123 N-----------------------------------------DTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLT 161 (194)
T ss_pred C-----------------------------------------CCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 0 01246778899999999999999999999999999999
Q ss_pred EEEEEe--cCHHHHHHHHHcCCeEEEEEe
Q psy16071 168 VFKVDA--TGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 168 ~~~~~~--~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
.+.+.+ .|..+.+||+|+||+..++..
T Consensus 162 ~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 162 RLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred EEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 876553 789999999999999988754
No 8
>PRK03624 putative acetyltransferase; Provisional
Probab=99.70 E-value=2.2e-15 Score=107.56 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=92.9
Q ss_pred ceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc--cCCeeEEEEecCCcEEEEEeccccc
Q psy16071 11 IDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL--QDNLSVMAVNGNGQVIGVALNGIQH 88 (225)
Q Consensus 11 ~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~va~~~~~~ivG~~~~~~~~ 88 (225)
.+++|+++++|.+++.++....-. ..+ +.... ..+...+ .....+++.+ ++++||++....
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~~~-~~~------------~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~vG~~~~~~-- 64 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERCDL-TRP------------WNDPE-MDIERKLNHDPSLFLVAEV-GGEVVGTVMGGY-- 64 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhcCC-Ccc------------hhhHH-HHHHHHhcCCCceEEEEEc-CCcEEEEEEeec--
Confidence 468999999999999998766410 000 10111 1111111 2234566654 589999987421
Q ss_pred CCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE
Q psy16071 89 EGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV 168 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~ 168 (225)
.. ...++..++|+|+|||+|+|+.|++.+++.+++.|++.
T Consensus 65 ~~----------------------------------------~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~ 104 (140)
T PRK03624 65 DG----------------------------------------HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPK 104 (140)
T ss_pred cC----------------------------------------CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCE
Confidence 10 01245678999999999999999999999999999998
Q ss_pred EEEE--ecCHHHHHHHHHcCCeEEEEEeccccc
Q psy16071 169 FKVD--ATGVFSQKISTKLGLETLIELEYRNHL 199 (225)
Q Consensus 169 ~~~~--~~n~~~~~~y~k~Gf~~~~~~~~~~~~ 199 (225)
+.+. ..|..+.++|+|+||+..+.+.+....
T Consensus 105 ~~~~~~~~N~~~~~~y~k~GF~~~~~~~~~~~~ 137 (140)
T PRK03624 105 INLQVREDNDAVLGFYEALGYEEQDRISLGKRL 137 (140)
T ss_pred EEEEEecCcHHHHHHHHHcCCccccEEehhhcc
Confidence 6544 468999999999999998887776554
No 9
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.69 E-value=7.7e-16 Score=112.64 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=93.4
Q ss_pred EEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCChh
Q psy16071 14 VYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGDVD 93 (225)
Q Consensus 14 ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~~~ 93 (225)
||+++++|++++.++..+.+..+ .. . ..... .+... .....+++.+.++++||++..... +.
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~--~~--------~-~~~~~--~~~~~-~~~~~~v~~~~~~~ivG~~~~~~~-~~--- 62 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLD--LN--------S-SYAYL--LLCTD-FADTSIVAESEGGEIVGFVSGYLR-PD--- 62 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCC--cc--------c-ceehh--hhhhh-cCCcEEEEEcCCCeEEEEEEEEec-CC---
Confidence 58899999999999998764211 00 0 00111 11111 234456666445899999864211 10
Q ss_pred HHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE--
Q psy16071 94 EAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV-- 171 (225)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~-- 171 (225)
.....++..++|+|+|||+|||++|++++++.++..++..+.+
T Consensus 63 -----------------------------------~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v 107 (157)
T TIGR02406 63 -----------------------------------RPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTI 107 (157)
T ss_pred -----------------------------------CCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1234678899999999999999999999999999999888654
Q ss_pred EecCHHHHHHHHHcCCeEEEEEecccccc
Q psy16071 172 DATGVFSQKISTKLGLETLIELEYRNHLD 200 (225)
Q Consensus 172 ~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~ 200 (225)
...|..+++||+|+||+......-..+-|
T Consensus 108 ~~~N~~a~~ly~k~G~~~~~~~~~~~~~~ 136 (157)
T TIGR02406 108 TPDNQASRALFKALARRRGVHLIEEPFFD 136 (157)
T ss_pred cCCCHHHHHHHHHhCcccCCCeEeecccc
Confidence 44799999999999998866665555544
No 10
>PHA00673 acetyltransferase domain containing protein
Probab=99.69 E-value=1.2e-15 Score=109.06 Aligned_cols=137 Identities=9% Similarity=-0.061 Sum_probs=93.3
Q ss_pred EecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccC--CeeEEEEecCCcEEEEEecccccCCCh
Q psy16071 15 YPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQD--NLSVMAVNGNGQVIGVALNGIQHEGDV 92 (225)
Q Consensus 15 r~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~va~~~~~~ivG~~~~~~~~~~~~ 92 (225)
--++.+|+++|.+++.+. +..........+ .+.... +..+..+ ...+++.+ +|+|||++.+......
T Consensus 10 ~~A~~~D~paI~~LLadd-----~l~~~r~d~~~~--~~y~~a-f~ai~~dp~~~llVa~~-~g~vVG~~~l~~~p~l-- 78 (154)
T PHA00673 10 AFAELADAPTFASLCAEY-----AHESANADLAGR--APDHHA-YAGMEAAGVAHFLGVFR-GEELVGFACLLVTPVP-- 78 (154)
T ss_pred hhccHhhHHHHHHHHHhc-----cccccccccccc--chhHHH-HHHHHhCCCcEEEEEEE-CCEEEEEEEEEEecCC--
Confidence 348999999999999872 111111110011 122222 3444333 33455555 6999999886543211
Q ss_pred hHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE
Q psy16071 93 DEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~ 172 (225)
.+.......|..++|+|++||+|||++|++++++.|+++|+..+++.
T Consensus 79 ---------------------------------~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis 125 (154)
T PHA00673 79 ---------------------------------HFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVS 125 (154)
T ss_pred ---------------------------------ccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 11123456899999999999999999999999999999999998766
Q ss_pred e-cCHHHHHHHHHcCCeEEEEEec
Q psy16071 173 A-TGVFSQKISTKLGLETLIELEY 195 (225)
Q Consensus 173 ~-~n~~~~~~y~k~Gf~~~~~~~~ 195 (225)
. .+...+.||.++|++.....-|
T Consensus 126 ~~p~~~tv~fy~~~g~~~~~~~~~ 149 (154)
T PHA00673 126 GPTEGRLVQLLPAAGYRETNRTFY 149 (154)
T ss_pred cCCCccchHHHHhCCchhhchhhh
Confidence 5 5788899999999987655443
No 11
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.68 E-value=2.6e-15 Score=108.97 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=89.0
Q ss_pred cceEEEecCCCCHHH-HHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhcc--CCe-eEEEEec-CCcEEEEEec
Q psy16071 10 EIDYVYPIPEDKYND-VIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQ--DNL-SVMAVNG-NGQVIGVALN 84 (225)
Q Consensus 10 ~~~~ir~~~~~D~~~-i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~va~~~-~~~ivG~~~~ 84 (225)
+.++||+++++|.++ +..++.... ...+. ....+..++..... ... .+++.+. ++++||++..
T Consensus 5 ~~~~ir~~~~~D~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 72 (150)
T PLN02706 5 EKFKVRRLEISDKSKGFLELLQQLT-VVGDV-----------TEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSV 72 (150)
T ss_pred CceEEeEhhhcccchHHHHHHHhcc-CCCCC-----------CHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEE
Confidence 468899999999984 777665421 11111 23444444444333 222 2334332 4899999874
Q ss_pred ccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHc
Q psy16071 85 GIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKA 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~ 164 (225)
........ ......++..++|+|+|||+|||+.|++.++++|+++
T Consensus 73 ~~~~~~~~-----------------------------------~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~ 117 (150)
T PLN02706 73 FVERKFIR-----------------------------------NCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSA 117 (150)
T ss_pred EEEeeccc-----------------------------------CCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc
Confidence 31111000 0123456788999999999999999999999999999
Q ss_pred CCcEEEEEecCHHHHHHHHHcCCeEEE
Q psy16071 165 GFKVFKVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 165 g~~~~~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
|+..+.+.+. +.+.+||+|+||+..+
T Consensus 118 g~~~i~l~~~-~~N~~~y~k~GF~~~g 143 (150)
T PLN02706 118 GCYKVILDCS-EENKAFYEKCGYVRKE 143 (150)
T ss_pred CCCEEEEEec-cccHHHHHHCcCEEeh
Confidence 9999877654 2345799999998765
No 12
>KOG3216|consensus
Probab=99.68 E-value=8.8e-16 Score=107.05 Aligned_cols=139 Identities=19% Similarity=0.137 Sum_probs=94.3
Q ss_pred cceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccC--CeeE-EEEec-CCcEEEEEecc
Q psy16071 10 EIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQD--NLSV-MAVNG-NGQVIGVALNG 85 (225)
Q Consensus 10 ~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-va~~~-~~~ivG~~~~~ 85 (225)
.+++||.+|++|.+.+..++.+-- .-+.+...... ....+..-. .++. ..+. ++++. ++.++|+++..
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela-~Fek~~~~v~~-----te~~l~~~~--F~d~~~~~~~v~~ie~~~~~~aGf~~yf 73 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELA-EFEKLEDQVEA-----TEENLARDG--FIDPPFKHWLVAAIETSGEVVAGFALYF 73 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHH-HHHHhccchhh-----chhhhhhhh--ccCCCccEEEEEEEecCCCceeEEeeee
Confidence 378999999999999999987531 11112111100 111122100 1222 2333 34444 48999999843
Q ss_pred cccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcC
Q psy16071 86 IQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAG 165 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g 165 (225)
..+. . | -....+|+..|+|.|+|||+|+|+.|++.+-+.|.+.|
T Consensus 74 ~~ys--t---W-------------------------------~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G 117 (163)
T KOG3216|consen 74 NNYS--T---W-------------------------------LGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLG 117 (163)
T ss_pred cccc--c---c-------------------------------cccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcC
Confidence 2111 0 1 11346899999999999999999999999999999999
Q ss_pred CcEEE--EEecCHHHHHHHHHcCCeEEEE
Q psy16071 166 FKVFK--VDATGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 166 ~~~~~--~~~~n~~~~~~y~k~Gf~~~~~ 192 (225)
+..+. +.-.|..|+.||++.|++..++
T Consensus 118 ~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 118 TPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred CCcEEEEEeccchhHHHHHHHhCccccce
Confidence 99964 4447999999999999998876
No 13
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=3.3e-15 Score=108.41 Aligned_cols=145 Identities=19% Similarity=0.171 Sum_probs=104.8
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCe-eEEEEecCCcEEEEEecccccCC
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNL-SVMAVNGNGQVIGVALNGIQHEG 90 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~va~~~~~~ivG~~~~~~~~~~ 90 (225)
+.||+++.+|++.|+++....+.. ..... ..++.......+.+......+. .+|+.+.+|+++|.+....+...
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~-~~a~~----e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r 76 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVEN-TAATF----EEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRER 76 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhc-ceEEE----eccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCc
Confidence 579999999999999998776532 11111 1122233444444555445564 44555545999999986654432
Q ss_pred ChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEE
Q psy16071 91 DVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFK 170 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~ 170 (225)
+. -.....+.++|+|+.||+|||++|++.+++.++.+|+..+.
T Consensus 77 ~a-------------------------------------y~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lv 119 (169)
T COG1247 77 PA-------------------------------------YRHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELV 119 (169)
T ss_pred cc-------------------------------------cceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEE
Confidence 21 12456788999999999999999999999999999998865
Q ss_pred --EEecCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 171 --VDATGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 171 --~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
+...|.+|.++.+++||+.++..+-..+
T Consensus 120 a~I~~~n~aSi~lh~~~GF~~~G~~~~vg~ 149 (169)
T COG1247 120 AGIESDNLASIALHEKLGFEEVGTFPEVGD 149 (169)
T ss_pred EEEcCCCcHhHHHHHHCCCEEecccccccc
Confidence 4557999999999999999998765543
No 14
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.65 E-value=1.5e-14 Score=105.43 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=93.7
Q ss_pred EEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc--cCCeeEEEEecCCcEEEEEecccccCCC
Q psy16071 14 VYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL--QDNLSVMAVNGNGQVIGVALNGIQHEGD 91 (225)
Q Consensus 14 ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~va~~~~~~ivG~~~~~~~~~~~ 91 (225)
||+++++|++++..++.+... ...+. ...........+.++.... .....+++.+.+|++||++......+
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~-- 73 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRH-EYFFT----FEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDP-- 73 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHH-HTSSS----SCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSS--
T ss_pred CCCCcHHHHHHHHHHHhhhhh-cceeE----ecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeec--
Confidence 799999999999999865321 01111 0000012344555555542 34556666655699999997543222
Q ss_pred hhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHH-HHcCCcEEE
Q psy16071 92 VDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIA-SKAGFKVFK 170 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a-~~~g~~~~~ 170 (225)
. .....+. ++|.|++||+|+|+.|++.+++.| ++.|++.+.
T Consensus 74 ~-------------------------------------~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~ 115 (155)
T PF13420_consen 74 Y-------------------------------------NHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIY 115 (155)
T ss_dssp G-------------------------------------TTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEE
T ss_pred c-------------------------------------CCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEE
Confidence 0 1233443 778899999999999999999999 999999977
Q ss_pred E--EecCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 171 V--DATGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 171 ~--~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
+ ..+|..+++||+++||+..+++.-.-+
T Consensus 116 ~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~ 145 (155)
T PF13420_consen 116 LEVFSSNEKAINFYKKLGFEEEGELKDHIF 145 (155)
T ss_dssp EEEETT-HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHHhCCCEEEEEEecEEE
Confidence 4 458999999999999999998765444
No 15
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.64 E-value=7e-15 Score=106.95 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=90.6
Q ss_pred EEecC-CCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc-cCC-eeEEEEecCCcEEEEEecccccCC
Q psy16071 14 VYPIP-EDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL-QDN-LSVMAVNGNGQVIGVALNGIQHEG 90 (225)
Q Consensus 14 ir~~~-~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~va~~~~~~ivG~~~~~~~~~~ 90 (225)
||+++ ++|++.|.+.+.+.... ..... .+ .......+....- ..+ ..+++.. +|+++|++........
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~-----~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~v~~~-dg~~~g~~~~~~~~~~ 71 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVR-----EFWDQ--DP-SQEWVEEYPEQLEADPGHHPYVAED-DGEPIGYFEIYWPDED 71 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHH-----CCH-C--CC-THHHHHHHHHHHCHTTTEEEEEEEE-TTEEEEEEEEEEGGGS
T ss_pred CeeCccHHHHHHHHHHHHhHHHH-----HHccC--CC-CHHHHHHHHhhhcccCCceEEEEEE-CCEEEEEEEEeccccc
Confidence 69999 99999999998665211 11111 11 1222333333221 233 4566665 6999999975322111
Q ss_pred ChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHc-CCcEE
Q psy16071 91 DVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKA-GFKVF 169 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~-g~~~~ 169 (225)
.. . .+..+.++.++|+|++||+|+|+.+++.+++.+.+. +++.+
T Consensus 72 ~~----------------------------------~-~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i 116 (152)
T PF13523_consen 72 YD----------------------------------A-DDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRI 116 (152)
T ss_dssp S--------------------------------------TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EE
T ss_pred cc----------------------------------C-CCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEE
Confidence 10 0 134577899999999999999999999999999876 88887
Q ss_pred EEEe--cCHHHHHHHHHcCCeEEEEEecc
Q psy16071 170 KVDA--TGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 170 ~~~~--~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
.+++ .|.+++++|+|.||+.++++.+.
T Consensus 117 ~~~~~~~N~~~~~~~~k~GF~~~g~~~~~ 145 (152)
T PF13523_consen 117 VLDPHEDNTRAIRLYEKAGFRKVGEFEFP 145 (152)
T ss_dssp EEEEBTT-HHHHHHHHHTT-EEEEEEEES
T ss_pred EEecCcCCHHHHHHHHHcCCEEeeEEECC
Confidence 7665 69999999999999999998763
No 16
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.64 E-value=7e-15 Score=108.77 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=88.6
Q ss_pred ccceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEeccccc
Q psy16071 9 EEIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQH 88 (225)
Q Consensus 9 ~~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~ 88 (225)
.++++||+++++|.+++.+++.... .+. . . .......++.. ....+++.+.++++||++......
T Consensus 3 ~~~i~iR~a~~~D~~~i~~L~~~~~-~~~-~------~----~~~~~~~~~~~---~~~~~va~~~~~~iiG~~~~~~~~ 67 (169)
T PRK07922 3 AGAITVRRARTSDVPAIKRLVDPYA-QGR-I------L----LEKNLVTLYEA---VQEFWVAEHLDGEVVGCGALHVMW 67 (169)
T ss_pred CCCceeecCCHhhHHHHHHHHHHHh-hcC-c------c----ccchHHHHHhh---cCcEEEEEecCCcEEEEEEEeecC
Confidence 3468999999999999999876532 110 0 0 00111122221 234456653469999998643210
Q ss_pred CCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE
Q psy16071 89 EGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV 168 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~ 168 (225)
.....+..++|+|+|||+|||++|++++++.|++.|++.
T Consensus 68 -----------------------------------------~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~ 106 (169)
T PRK07922 68 -----------------------------------------EDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSR 106 (169)
T ss_pred -----------------------------------------CCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCE
Confidence 012467789999999999999999999999999999998
Q ss_pred EEEEecCHHHHHHHHHcCCeEEEEEe
Q psy16071 169 FKVDATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 169 ~~~~~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
+.+.+.+ .+||+|+||+.++...
T Consensus 107 l~~~~~~---~~fY~k~GF~~~~~~~ 129 (169)
T PRK07922 107 VFVLTFE---VEFFARHGFVEIDGTP 129 (169)
T ss_pred EEEEecc---HHHHHHCCCEECcccc
Confidence 7765543 6899999999886544
No 17
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.63 E-value=2.9e-14 Score=104.55 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=89.0
Q ss_pred ceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCC
Q psy16071 11 IDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEG 90 (225)
Q Consensus 11 ~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~ 90 (225)
++.+|+++++|++.+.++..+.- .+....... ..........+... .....+++.+ +|++||++........
T Consensus 3 ~i~lr~~~~~D~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~vG~~~~~~~~~~ 74 (162)
T PRK10140 3 EIVIRHAETRDYEAIRQIHAQPE----VYHNTLQVP--HPSDHMWQERLADR-PGIKQLVACI-DGDVVGHLTIDVQQRP 74 (162)
T ss_pred ccEEEecchhhHHHHHHHHhCcc----cccccccCC--CcCHHHHHHHhhcC-CCcEEEEEEE-CCEEEEEEEEeccccc
Confidence 58899999999999999886421 010000110 10111111111110 1123455544 5899999875422110
Q ss_pred ChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHH-cCCcEE
Q psy16071 91 DVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASK-AGFKVF 169 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~-~g~~~~ 169 (225)
. ...... ..++|+|+|||+|||+.|++.+++.+++ .|+..+
T Consensus 75 ~-------------------------------------~~~~~~-~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i 116 (162)
T PRK10140 75 R-------------------------------------RSHVAD-FGICVDSRWKNRGVASALMREMIEMCDNWLRVDRI 116 (162)
T ss_pred c-------------------------------------cceEEE-EEEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEE
Confidence 0 011222 2489999999999999999999999987 688875
Q ss_pred E--EEecCHHHHHHHHHcCCeEEEEEec
Q psy16071 170 K--VDATGVFSQKISTKLGLETLIELEY 195 (225)
Q Consensus 170 ~--~~~~n~~~~~~y~k~Gf~~~~~~~~ 195 (225)
. +..+|..+.+||+|+||+..+...-
T Consensus 117 ~l~v~~~N~~a~~~y~k~GF~~~g~~~~ 144 (162)
T PRK10140 117 ELTVFVDNAPAIKVYKKYGFEIEGTGKK 144 (162)
T ss_pred EEEEEcCCHHHHHHHHHCCCEEEeeccc
Confidence 4 4557999999999999999887553
No 18
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.62 E-value=6.9e-15 Score=95.72 Aligned_cols=59 Identities=29% Similarity=0.454 Sum_probs=54.0
Q ss_pred CcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEe--cCHHHHHHHHHcCCe
Q psy16071 130 TSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDA--TGVFSQKISTKLGLE 188 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~--~n~~~~~~y~k~Gf~ 188 (225)
....++..++|+|+|||+|||+.|++++++.+++.|+..+.+.+ .|..+.+||+|+||+
T Consensus 23 ~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 23 GNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp TTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred CCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 35789999999999999999999999999999999999977655 689999999999996
No 19
>PRK10514 putative acetyltransferase; Provisional
Probab=99.61 E-value=1.9e-14 Score=103.78 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=86.9
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCC
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGD 91 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~ 91 (225)
+.||+++++|.+++.+++.+++....... . +.....+...+.........+++...++++||++... +
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~---~-- 69 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFL-----S--AEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLS---G-- 69 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCccc-----C--chhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEe---c--
Confidence 46999999999999999887652111110 0 1012233333333334444566654458999998632 0
Q ss_pred hhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE
Q psy16071 92 VDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~ 171 (225)
.++..++|+|+|||+|||++|++++++.+++ + .+.+
T Consensus 70 -----------------------------------------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i-~~~v 105 (145)
T PRK10514 70 -----------------------------------------GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--L-TTDV 105 (145)
T ss_pred -----------------------------------------CcEeEEEECHHhccCCHHHHHHHHHHHhccc--c-EEEe
Confidence 0234688999999999999999999987643 2 2345
Q ss_pred EecCHHHHHHHHHcCCeEEEEEec
Q psy16071 172 DATGVFSQKISTKLGLETLIELEY 195 (225)
Q Consensus 172 ~~~n~~~~~~y~k~Gf~~~~~~~~ 195 (225)
...|..+.+||+|+||+..++...
T Consensus 106 ~~~N~~a~~~yek~Gf~~~~~~~~ 129 (145)
T PRK10514 106 NEQNEQAVGFYKKMGFKVTGRSEV 129 (145)
T ss_pred ecCCHHHHHHHHHCCCEEeccccc
Confidence 568999999999999999887664
No 20
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.61 E-value=2.5e-14 Score=103.35 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=53.1
Q ss_pred EEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE--ecCHHHHHHHHHcCCeEEEEE
Q psy16071 134 ECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD--ATGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 134 ~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~--~~n~~~~~~y~k~Gf~~~~~~ 193 (225)
.+..++|+|+|||+|||+.|++++++.+++.|+..+.+. ..|..+.++|+|+||+..+..
T Consensus 65 ~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~ 126 (146)
T PRK09491 65 TLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIR 126 (146)
T ss_pred EEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeee
Confidence 456789999999999999999999999999999886655 468999999999999987765
No 21
>PRK07757 acetyltransferase; Provisional
Probab=99.61 E-value=1.4e-14 Score=105.42 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=96.2
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCC
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGD 91 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~ 91 (225)
+++|+++++|++.+.+++.... ..... . +...... ...+ ...+++.+ +|++||++......
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~-~~~~~-----~---~~~~~~~----~~~~--~~~~i~~~-~~~lvG~~~l~~~~--- 62 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYA-KKGLM-----L---PRSLDEL----YENI--RDFYVAEE-EGEIVGCCALHILW--- 62 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHH-hcCCc-----c---CCCHHHH----Hhcc--CcEEEEEE-CCEEEEEEEEEecc---
Confidence 5799999999999999986533 11110 0 0011111 1111 12344444 59999999753211
Q ss_pred hhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE
Q psy16071 92 VDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~ 171 (225)
....++..++|+|+|||+|+|++|++++++.|++.|+..+.+
T Consensus 63 --------------------------------------~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~ 104 (152)
T PRK07757 63 --------------------------------------EDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFA 104 (152)
T ss_pred --------------------------------------CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 112467789999999999999999999999999999987655
Q ss_pred EecCHHHHHHHHHcCCeEEEEEecccccccCCCcccCCCCCCCceEEEEEee
Q psy16071 172 DATGVFSQKISTKLGLETLIELEYRNHLDSATGLPMFTPPSPHTSLKVMVKI 223 (225)
Q Consensus 172 ~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~ 223 (225)
.+. +.+||+|+||+..+...+.+-. +.+=... +..|+=...-|+|.
T Consensus 105 ~~~---~~~~Y~k~GF~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~ 150 (152)
T PRK07757 105 LTY---QPEFFEKLGFREVDKEALPQKV--WADCIKC-PKFPNCDEIAMIKE 150 (152)
T ss_pred EeC---cHHHHHHCCCEEcccccCChhH--HhcCccC-CCCCCcchhhhhhh
Confidence 443 4689999999999887776543 4442222 33344333344443
No 22
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.60 E-value=6.7e-14 Score=120.93 Aligned_cols=154 Identities=13% Similarity=0.131 Sum_probs=104.7
Q ss_pred cccceEEEec-CCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc-cCCeeEEEEec-CCcEEEEEec
Q psy16071 8 KEEIDYVYPI-PEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL-QDNLSVMAVNG-NGQVIGVALN 84 (225)
Q Consensus 8 ~~~~~~ir~~-~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~-~~~ivG~~~~ 84 (225)
....++||++ +++|++++..+....... |. .... ++.... .....+++.+. +|++||++.+
T Consensus 79 ~~~g~~IR~~~~~~D~~~I~~L~~~~~~~--p~-----------~~~~---~~~~~~~~~~~~~vA~~~~~g~IVG~~~~ 142 (547)
T TIGR03103 79 TPRGFTVRRLRGPADVDAINRLYAARGMV--PV-----------RVDF---VLDHRHSRAITYLVAEDEASGAIIGTVMG 142 (547)
T ss_pred CCCCcEEEeCCChhHHHHHHHHHHhcCCC--CC-----------CHHH---HHHHhcCCCceEEEEEECCCCeEEEEEEE
Confidence 3457899997 789999999998775321 11 1111 122221 23345667653 5999999874
Q ss_pred ccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHc
Q psy16071 85 GIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKA 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~ 164 (225)
...... +.. .....++..|+|+|+|||+|||++|++++++.++++
T Consensus 143 ~~~~~~---------------------------------~~d--~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~ 187 (547)
T TIGR03103 143 VDHRKA---------------------------------FND--PEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSR 187 (547)
T ss_pred Eecccc---------------------------------ccC--CCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC
Confidence 211110 000 011246888999999999999999999999999999
Q ss_pred CCcEEEEE--ecCHHHHHHHHHcCCeEEEEEecccccccCCCcccCCCCCCC
Q psy16071 165 GFKVFKVD--ATGVFSQKISTKLGLETLIELEYRNHLDSATGLPMFTPPSPH 214 (225)
Q Consensus 165 g~~~~~~~--~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~~ 214 (225)
|+..+.+. ..|..+++||+|+||+.+......+. + .-.+..|..|+|.
T Consensus 188 G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~~d~-~-~~~~~~~~g~~~~ 237 (547)
T TIGR03103 188 GCAYMDLSVMHDNEQAIALYEKLGFRRIPVFALKRK-N-AINERLFSGPAPE 237 (547)
T ss_pred CCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEEecc-C-CcCcccccCCCcc
Confidence 99987654 47899999999999998887666554 2 3356667555544
No 23
>PLN02825 amino-acid N-acetyltransferase
Probab=99.59 E-value=1.6e-14 Score=122.48 Aligned_cols=147 Identities=14% Similarity=0.066 Sum_probs=101.1
Q ss_pred EEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCCh
Q psy16071 13 YVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGDV 92 (225)
Q Consensus 13 ~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~~ 92 (225)
.||+++++|++.+.+++..... +.. .. ....+. +...+ .. +++.+.||+|||++......
T Consensus 369 ~IR~At~eDi~~I~~Li~~lee--~g~------lv-~rs~e~----le~ei--~~-f~V~e~Dg~IVG~aal~~~~---- 428 (515)
T PLN02825 369 GTRMARVEDLAGIRQIIRPLEE--SGI------LV-RRTDEE----LLRAL--DS-FVVVEREGSIIACAALFPFF---- 428 (515)
T ss_pred hheeCCHHHHHHHHHHHHHHHH--cCC------Cc-CCCHHH----HHhcC--Cc-EEEEEECCEEEEEEEEEeec----
Confidence 4999999999999999976431 111 00 001122 22222 22 34444469999998743211
Q ss_pred hHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE
Q psy16071 93 DEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~ 172 (225)
.....++..++|+|+|||+|+|++|++++++.|+++|++.+.+.
T Consensus 429 ------------------------------------~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Ll 472 (515)
T PLN02825 429 ------------------------------------EEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLL 472 (515)
T ss_pred ------------------------------------CCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 01235788899999999999999999999999999999998887
Q ss_pred ecCHHHHHHHHHcCCeEEEEEecccccccCCCcccCCCCCCCceEEEEEeecC
Q psy16071 173 ATGVFSQKISTKLGLETLIELEYRNHLDSATGLPMFTPPSPHTSLKVMVKILQ 225 (225)
Q Consensus 173 ~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~ 225 (225)
+++ +.+||+++||+..+...+..-.. ..-+..+..++++|.|+
T Consensus 473 tt~--a~~fY~k~GF~~~~~~~lp~~~~--------~~yn~~r~sk~~~k~l~ 515 (515)
T PLN02825 473 TTR--TADWFVRRGFSECSIESLPEARR--------KRINLSRGSKYYMKKLL 515 (515)
T ss_pred eCc--HHHHHHHCCCEEeChhhCCHHHH--------hhcCccCCcEEEEEecC
Confidence 754 57999999998876544433221 12235688899999875
No 24
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.57 E-value=6.7e-14 Score=98.83 Aligned_cols=122 Identities=22% Similarity=0.227 Sum_probs=87.5
Q ss_pred EEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCCh
Q psy16071 13 YVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGDV 92 (225)
Q Consensus 13 ~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~~ 92 (225)
.+|.++.+|++.|.+++...... ++-. +.+...+...+. . ..++.. +|++||++...+. .+
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~--------gil~-~rs~~~le~~i~-----d-F~i~E~-~g~viGC~aL~~~-~~-- 62 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQ--------GILL-RRSREQLEEEID-----D-FTIIER-DGKVIGCAALHPV-LE-- 62 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhc--------cccc-hhhHHHHHHHHh-----h-heeeee-CCcEEEEEeeccc-Cc--
Confidence 58999999999999999875421 1100 001222222221 1 133433 6999999975321 11
Q ss_pred hHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE
Q psy16071 93 DEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~ 172 (225)
.....+..++|+|++||+|+|.+|+++++..|++.|++.+++.
T Consensus 63 -------------------------------------~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~L 105 (153)
T COG1246 63 -------------------------------------EDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVL 105 (153)
T ss_pred -------------------------------------cCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 2245788999999999999999999999999999999998887
Q ss_pred ecCHHHHHHHHHcCCeEEEE
Q psy16071 173 ATGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 173 ~~n~~~~~~y~k~Gf~~~~~ 192 (225)
++ .+..||+++||+.+..
T Consensus 106 Tt--~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 106 TT--RSPEFFAERGFTRVDK 123 (153)
T ss_pred ec--ccHHHHHHcCCeECcc
Confidence 75 4568999999998765
No 25
>PRK09831 putative acyltransferase; Provisional
Probab=99.57 E-value=1.6e-14 Score=104.48 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=83.7
Q ss_pred EEEecCCCCHHHHHHHHHhhccCCCcchhhccccCC--CCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCC
Q psy16071 13 YVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCET--GRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEG 90 (225)
Q Consensus 13 ~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~ 90 (225)
+||+++++|.+.+.++...++....... .+.+ ..+.......+...+..+..+++.+ +|++||++....
T Consensus 2 ~ir~a~~~D~~~l~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~iiG~~~~~~---- 72 (147)
T PRK09831 2 QIRNYQPGDFQQLCAIFIRAVTMTASQH----YSPQQIAAWAQIDESRWKEKLAKSQVRVAVI-NAQPVGFITCIE---- 72 (147)
T ss_pred ccccCChhhHHHHHHHHHHHHHHhhhhc----CCHHHHHhccCCCHHHHHHHHhcCceEEEEE-CCEEEEEEEehh----
Confidence 5899999999999999887653211110 0000 0000000112222334455566654 599999986310
Q ss_pred ChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEE
Q psy16071 91 DVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFK 170 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~ 170 (225)
.++..++|+|+|||+|||++|++++++.+++ +.
T Consensus 73 ------------------------------------------~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~ 105 (147)
T PRK09831 73 ------------------------------------------HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LT 105 (147)
T ss_pred ------------------------------------------ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eE
Confidence 1356788999999999999999999999876 34
Q ss_pred EEecCHHHHHHHHHcCCeEEEEEe
Q psy16071 171 VDATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 171 ~~~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
+.+ +..+.+||+|+||+.+++.+
T Consensus 106 v~~-~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 106 VDA-SITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred eec-chhhHHHHHHCCCEEeeccc
Confidence 443 57889999999999998866
No 26
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.57 E-value=3.3e-14 Score=119.93 Aligned_cols=146 Identities=16% Similarity=0.067 Sum_probs=96.3
Q ss_pred EEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCCh
Q psy16071 13 YVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGDV 92 (225)
Q Consensus 13 ~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~~ 92 (225)
.||+++++|++++.+++..... +.+ ......+.+...+ ...+++. .++++||++.......
T Consensus 284 ~IR~at~~Dl~~I~~L~~~~~~--~~~-----------~~~~~~~~l~~~~--~~~~V~~-~dg~iVG~~~~~~~~~--- 344 (429)
T TIGR01890 284 SIRQATIDDIGGIAALIRPLEE--QGI-----------LVRRSREYLEREI--SEFSIIE-HDGNIIGCAALYPYAE--- 344 (429)
T ss_pred heEECCHHHHHHHHHHHHHHHH--cCC-----------chhhhHHHHHhhc--CcEEEEE-ECCEEEEEEEEEecCC---
Confidence 6999999999999999864321 110 0112222333222 1234443 3589999987432210
Q ss_pred hHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE
Q psy16071 93 DEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~ 172 (225)
....++..++|+|+|||+|+|++|++++++.|+++|+..+.+.
T Consensus 345 -------------------------------------~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~ 387 (429)
T TIGR01890 345 -------------------------------------EDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVL 387 (429)
T ss_pred -------------------------------------CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1235678899999999999999999999999999999987666
Q ss_pred ecCHHHHHHHHHcCCeEEEEEecccccccCCCcccCCCCCCCceEEEEEeec
Q psy16071 173 ATGVFSQKISTKLGLETLIELEYRNHLDSATGLPMFTPPSPHTSLKVMVKIL 224 (225)
Q Consensus 173 ~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~ 224 (225)
++| +.+||+|+||+..+.-.+.. +.+.+.. +.+..++++|++
T Consensus 388 ~~~--a~~fY~k~GF~~~g~~~l~~------~~~~~~~--~~r~~~~~~~~~ 429 (429)
T TIGR01890 388 TTR--TGHWFRERGFQTASVDELPE------ARRKLYN--YQRNSKILMKRL 429 (429)
T ss_pred ecc--hHHHHHHCCCEECChhhCCH------HHHHHhc--ccccCceeeecC
Confidence 554 46999999999887643322 2222322 224446777764
No 27
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.56 E-value=1.8e-14 Score=99.95 Aligned_cols=51 Identities=27% Similarity=0.451 Sum_probs=44.4
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCC
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGL 187 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf 187 (225)
+..++|+|+|||+|||++|++.+++.+++ |+..+.+. .|..+.+||+++||
T Consensus 67 i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~-~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 67 ISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE-ANERARRFYRKLGF 117 (117)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE-C-HHHHHHHHHTT-
T ss_pred EEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE-eCHHHHHHHHhCCC
Confidence 77799999999999999999999999977 99877766 89999999999998
No 28
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.55 E-value=1.3e-13 Score=100.30 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=97.8
Q ss_pred ceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc--cCCeeEEEEecCCcEEEEEeccccc
Q psy16071 11 IDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL--QDNLSVMAVNGNGQVIGVALNGIQH 88 (225)
Q Consensus 11 ~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~va~~~~~~ivG~~~~~~~~ 88 (225)
.+.||..++.|++++.++..++|.+ . ....+.+.++..- ...+++||.|+ |++||.++.....
T Consensus 3 ~~~ir~e~~~d~~~i~~~~~~aF~~---~-----------~e~~~v~~lR~~~~~~~~LslVA~d~-g~vvG~Il~s~v~ 67 (171)
T COG3153 3 MMLIRTETPADIPAIEALTREAFGP---G-----------REAKLVDKLREGGRPDLTLSLVAEDD-GEVVGHILFSPVT 67 (171)
T ss_pred ccEEEecChhhHHHHHHHHHHHhhc---c-----------hHHHHHHHHHhcCCcccceeEEEeeC-CEEEEEEEEeEEE
Confidence 5679999999999999999999941 0 1233444455433 45789999985 9999999965433
Q ss_pred CCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE
Q psy16071 89 EGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV 168 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~ 168 (225)
... .....+.+..|+|+|+|||||||++|++.+++.++..|+..
T Consensus 68 ~~g------------------------------------~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~ 111 (171)
T COG3153 68 VGG------------------------------------EELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASA 111 (171)
T ss_pred ecC------------------------------------cccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCE
Confidence 220 01235789999999999999999999999999999999998
Q ss_pred EEEEecCHHHHHHHHHcCCeEEEEEe
Q psy16071 169 FKVDATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 169 ~~~~~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
+.+.- ++ .+|.|+||+....-.
T Consensus 112 v~vlG-dp---~YY~rfGF~~~~~~~ 133 (171)
T COG3153 112 VVVLG-DP---TYYSRFGFEPAAGAK 133 (171)
T ss_pred EEEec-Cc---ccccccCcEEccccc
Confidence 66542 22 479999998876433
No 29
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.55 E-value=3.8e-13 Score=101.79 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=95.6
Q ss_pred Ccccccc-cccceEEEecCCCCHHHHHHHHHhh--ccCCCcchhhccccCC-CCCcHHH---HHHHHHhccCC--eeEEE
Q psy16071 1 MSRRKMS-KEEIDYVYPIPEDKYNDVIEHLRYN--FFADEPLNKCVGLCET-GRGHSEL---ELHSILTLQDN--LSVMA 71 (225)
Q Consensus 1 ~~~~~~~-~~~~~~ir~~~~~D~~~i~~ll~~~--f~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~--~~~va 71 (225)
|.++++. ..+.+.+|+++++|.+++.+++.+. +.. ++. ..... ....... ...+......+ ..++.
T Consensus 6 ~~~~~~~l~t~rl~LR~~~~~Da~~~~~l~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 80 (194)
T PRK10809 6 SNVPKVRLTTDRLVVRLVHERDAWRLADYYAENRHFLK--PWE---PVRDESHCYPSGWQARLGMINEFHKQGSAFYFAL 80 (194)
T ss_pred CCCCceeeccCcEEEEeCCHHHHHHHHHHHHhCHHhcc--CCC---CCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 3445544 4568999999999999999998752 211 111 11000 0001111 12233322333 23444
Q ss_pred Eec-CCcEEEEEecccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHH
Q psy16071 72 VNG-NGQVIGVALNGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLA 150 (225)
Q Consensus 72 ~~~-~~~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig 150 (225)
.+. ++++||.+......... .... ...+.|+|+|||+|+|
T Consensus 81 ~~~~~~~~iG~i~l~~~~~~~--------------------------------------~~~~-eig~~i~~~~~G~G~~ 121 (194)
T PRK10809 81 LDPDEKEIIGVANFSNVVRGS--------------------------------------FHAC-YLGYSLGQKWQGQGLM 121 (194)
T ss_pred EECCCCeEEEEEEEEeecCCC--------------------------------------eeeE-EEEEEECHHHcCCCHH
Confidence 443 48999998753221100 0112 2346799999999999
Q ss_pred HHHHHHHHHHHHH-cCCcEEEEEe--cCHHHHHHHHHcCCeEEEEEe
Q psy16071 151 NELFKLSIDIASK-AGFKVFKVDA--TGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 151 ~~L~~~~~~~a~~-~g~~~~~~~~--~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
+.+++.+++.|.+ .|++.+.+.+ .|.+|.++|+|+||+..+.+.
T Consensus 122 ~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~ 168 (194)
T PRK10809 122 FEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYAK 168 (194)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeeec
Confidence 9999999999976 6999976554 799999999999999888755
No 30
>PRK10562 putative acetyltransferase; Provisional
Probab=99.53 E-value=1.4e-13 Score=99.32 Aligned_cols=126 Identities=10% Similarity=-0.028 Sum_probs=81.4
Q ss_pred EEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc-cCCeeEEEEecCCcEEEEEecccccCCCh
Q psy16071 14 VYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL-QDNLSVMAVNGNGQVIGVALNGIQHEGDV 92 (225)
Q Consensus 14 ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~~~~ivG~~~~~~~~~~~~ 92 (225)
||+++.+|++++.++.........+.... . ........+.+.. .....+++.+ +|++||++.... .
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~v~~~-~~~~iG~~~~~~--~--- 68 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKE------Q-YWRESAPLVRDVYLPAAQTWVWEE-DGKLLGFVSVLE--G--- 68 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCH------H-HHHHhHHHhhhhhcCcccEEEEEE-CCEEEEEEEEee--c---
Confidence 79999999999999987653211121110 0 0011112222222 2233444444 589999986310 0
Q ss_pred hHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE
Q psy16071 93 DEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~ 172 (225)
..+..++|+|+|||+|+|++|++++++.+... .+.+.
T Consensus 69 ----------------------------------------~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~---~~~v~ 105 (145)
T PRK10562 69 ----------------------------------------RFVGALFVAPKAVRRGIGKALMQHVQQRYPHL---SLEVY 105 (145)
T ss_pred ----------------------------------------cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeE---EEEEE
Confidence 13567899999999999999999998854321 23445
Q ss_pred ecCHHHHHHHHHcCCeEEEEEec
Q psy16071 173 ATGVFSQKISTKLGLETLIELEY 195 (225)
Q Consensus 173 ~~n~~~~~~y~k~Gf~~~~~~~~ 195 (225)
..|..+.+||+|+||+.++...+
T Consensus 106 ~~N~~s~~~y~k~Gf~~~~~~~~ 128 (145)
T PRK10562 106 QKNQRAVNFYHAQGFRIVDSAWQ 128 (145)
T ss_pred cCChHHHHHHHHCCCEEcccccc
Confidence 67999999999999999886544
No 31
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.53 E-value=5.8e-14 Score=118.95 Aligned_cols=147 Identities=20% Similarity=0.164 Sum_probs=99.2
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCC
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGD 91 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~ 91 (225)
+.||+++++|++++.+++.... . . +... ..... .+.... ...+++.+ ++++||++....+..
T Consensus 295 ~~IR~at~~D~~~I~~L~~~~~-~-~------~~~~-~~~~~----~l~~~~--~~~~va~~-dg~iVG~~~~~~~~~-- 356 (441)
T PRK05279 295 EQLRRATIDDVGGILELIRPLE-E-Q------GILV-RRSRE----QLEREI--DKFTVIER-DGLIIGCAALYPFPE-- 356 (441)
T ss_pred HHeEeCCHHHHHHHHHHHHHHH-H-c------CCcc-ccCHH----HHhccc--CcEEEEEE-CCEEEEEEEEEEcCC--
Confidence 5799999999999999875321 0 0 0000 10111 122111 23455554 689999986432110
Q ss_pred hhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE
Q psy16071 92 VDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~ 171 (225)
....++..++|+|+|||+|+|++|++++++.|+++|+..+.+
T Consensus 357 --------------------------------------~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l 398 (441)
T PRK05279 357 --------------------------------------EKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFV 398 (441)
T ss_pred --------------------------------------CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEE
Confidence 123578889999999999999999999999999999998765
Q ss_pred EecCHHHHHHHHHcCCeEEEEEecccccccCCCcccCCCCCCCceEEEEEeec
Q psy16071 172 DATGVFSQKISTKLGLETLIELEYRNHLDSATGLPMFTPPSPHTSLKVMVKIL 224 (225)
Q Consensus 172 ~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~ 224 (225)
.+ ..+.+||+|+||+..+...+ ..+.+.|.. ..+..++++|.|
T Consensus 399 ~~--~~a~~fY~k~GF~~~g~~~~------~~~~~~~y~--~~r~~~~~~~~~ 441 (441)
T PRK05279 399 LT--TRTAHWFLERGFVPVDVDDL------PEAKRQLYN--YQRRSKVLVKDL 441 (441)
T ss_pred ec--chHHHHHHHCcCEECChhhC------cHHHHHhhC--cccCceeeeecC
Confidence 43 45789999999998876443 233344543 577788888764
No 32
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.52 E-value=4.9e-13 Score=107.51 Aligned_cols=138 Identities=15% Similarity=0.164 Sum_probs=92.3
Q ss_pred ccceEEEecCC-CCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHH-HHHhccCCeeEEEEec-CCcEEEEEecc
Q psy16071 9 EEIDYVYPIPE-DKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELH-SILTLQDNLSVMAVNG-NGQVIGVALNG 85 (225)
Q Consensus 9 ~~~~~ir~~~~-~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~va~~~-~~~ivG~~~~~ 85 (225)
...+++|+++. .|.+++.++....|. +.|... ......+... ..........+++.+. +|++||++...
T Consensus 147 ~~g~~~r~~~~~~d~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~ 218 (292)
T TIGR03448 147 PDGVTVRAYVGAPDDAEWLRVNNAAFA-WHPEQG-------GWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTK 218 (292)
T ss_pred CCCeEeeccCCCcchHHHHHHHHHHhh-CCCccC-------CcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEE
Confidence 45899999865 588888888877773 333211 0011222221 1112223345667764 58999997532
Q ss_pred cccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcC
Q psy16071 86 IQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAG 165 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g 165 (225)
.. ..+ ....++..++|+|+|||+|||++|++.+++.+++.|
T Consensus 219 ~~-~~~--------------------------------------~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g 259 (292)
T TIGR03448 219 VH-PDE--------------------------------------PALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARG 259 (292)
T ss_pred ec-CCC--------------------------------------CceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 11 100 112356668999999999999999999999999999
Q ss_pred CcEEEEE--ecCHHHHHHHHHcCCeEEEEE
Q psy16071 166 FKVFKVD--ATGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 166 ~~~~~~~--~~n~~~~~~y~k~Gf~~~~~~ 193 (225)
+..+.+. ..|..+.+||+|+||+...+.
T Consensus 260 ~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 260 LPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 9886544 468999999999999876653
No 33
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.52 E-value=4.4e-13 Score=94.52 Aligned_cols=61 Identities=21% Similarity=0.380 Sum_probs=54.1
Q ss_pred EEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE--ecCHHHHHHHHHcCCeEEEEEe
Q psy16071 134 ECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD--ATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 134 ~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~--~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
++..++|+|+|||+|+|++|++++++.+.+.|++.+.+. ..|..+..||+|+||+.++...
T Consensus 56 ~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 118 (131)
T TIGR01575 56 HILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRR 118 (131)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCcccccc
Confidence 577899999999999999999999999999998887655 4689999999999999887654
No 34
>KOG3396|consensus
Probab=99.50 E-value=8.9e-13 Score=90.17 Aligned_cols=137 Identities=23% Similarity=0.227 Sum_probs=94.2
Q ss_pred ccccceEEEecCCCCHHH-HHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCC--ee-EEEEecC-CcEEEE
Q psy16071 7 SKEEIDYVYPIPEDKYND-VIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDN--LS-VMAVNGN-GQVIGV 81 (225)
Q Consensus 7 ~~~~~~~ir~~~~~D~~~-i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~va~~~~-~~ivG~ 81 (225)
+.++.+.+|++..+|+.. .+++|.+-= ..|.. .+..+...+...-..+ .. .|..|.. ++|||.
T Consensus 2 ~~P~~~~lR~L~~~D~~kGf~elL~qLT--------~vG~v----t~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigt 69 (150)
T KOG3396|consen 2 SLPDGFKLRPLEEDDYGKGFIELLKQLT--------SVGVV----TREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGT 69 (150)
T ss_pred CCCCceEEeecccccccchHHHHHHHHh--------hcccc----CHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEE
Confidence 445579999999999997 888876421 01211 2344544444443333 22 3344544 899999
Q ss_pred EecccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHH
Q psy16071 82 ALNGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIA 161 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a 161 (225)
+...+-... + .+-...-++..+.|+++|||++||+.|++.++..|
T Consensus 70 atL~IE~Kf-----------------------I------------h~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~ 114 (150)
T KOG3396|consen 70 ATLFIERKF-----------------------I------------HGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLA 114 (150)
T ss_pred EEEEEehhh-----------------------h------------hcccccCceeEEEeChhhhhhHHhHHHHHHHHHHH
Confidence 875432110 0 01122347999999999999999999999999999
Q ss_pred HHcCCcEEEEEecCHHHHHHHHHcCCeEEE
Q psy16071 162 SKAGFKVFKVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 162 ~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
++.|+-.+.++|. +.+.+||+|.||....
T Consensus 115 k~lgcYKi~LdC~-~~nv~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 115 KSLGCYKIILDCD-PKNVKFYEKCGYSNAG 143 (150)
T ss_pred HhcCcEEEEEecc-hhhhhHHHHcCccccc
Confidence 9999998888886 5578999999996543
No 35
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.50 E-value=6e-13 Score=108.25 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=89.4
Q ss_pred ceEEEecCCCCHHHHHHHHHhh--ccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEE--e--cCCcEEEEEec
Q psy16071 11 IDYVYPIPEDKYNDVIEHLRYN--FFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAV--N--GNGQVIGVALN 84 (225)
Q Consensus 11 ~~~ir~~~~~D~~~i~~ll~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~--~--~~~~ivG~~~~ 84 (225)
.++||+++++|++++.++.... |.. +........+..++ ..+..+++. | .++.+||+++.
T Consensus 186 ~~~Ir~a~~~Dl~ri~~L~~~tnqfn~----------~~~~~s~~~i~~~l----~~~~~~~~~~~d~~gd~givG~~~~ 251 (320)
T TIGR01686 186 SLNISKNDEQNVQRVEELLGRTNQFNA----------TYTRLNQEDVAQHM----QKEEIVTVSMSDRFGDSGIIGIFVF 251 (320)
T ss_pred EEEEEECChhhhHHHHHHHHhHHhhhc----------cCccCCHHHHHHHh----cCCCEEEEEEEecCCCCceEEEEEE
Confidence 4689999999999999998765 321 00111223333333 333334333 3 24789999974
Q ss_pred ccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHc
Q psy16071 85 GIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKA 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~ 164 (225)
.. . ...+++..++|+|.+||+|||++|++++++.|++.
T Consensus 252 ~~--~----------------------------------------~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~ 289 (320)
T TIGR01686 252 EK--K----------------------------------------EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDL 289 (320)
T ss_pred Ee--c----------------------------------------CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHc
Confidence 21 0 12368999999999999999999999999999999
Q ss_pred CCcEEEEEe----cCHHHHHHHHHcCCeEE
Q psy16071 165 GFKVFKVDA----TGVFSQKISTKLGLETL 190 (225)
Q Consensus 165 g~~~~~~~~----~n~~~~~~y~k~Gf~~~ 190 (225)
|+..+.++. .|..+..||+++||+..
T Consensus 290 G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 290 GNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred CCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 999866543 59999999999999853
No 36
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.50 E-value=6e-13 Score=85.86 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=44.7
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeE
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
..++..++|+|+|||+|||+.|++++.+.++.. .+.+.+ ++.+..||+|+||+.
T Consensus 26 ~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~---~i~l~~-~~~~~~fY~~~GF~~ 79 (79)
T PF13508_consen 26 FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKSK---KIFLFT-NPAAIKFYEKLGFEE 79 (79)
T ss_dssp EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTCS---EEEEEE-EHHHHHHHHHTTEEE
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCCC---cEEEEE-cHHHHHHHHHCcCCC
Confidence 568999999999999999999999998888543 344444 688999999999974
No 37
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.49 E-value=9.2e-13 Score=98.01 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=92.1
Q ss_pred cceEEEecCCCCHH--HHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEec--CC----cEEEE
Q psy16071 10 EIDYVYPIPEDKYN--DVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNG--NG----QVIGV 81 (225)
Q Consensus 10 ~~~~ir~~~~~D~~--~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~--~~----~ivG~ 81 (225)
....+|.++.+|+. .+.++....|....|+ ....+...+.. .....+++... ++ +++|+
T Consensus 10 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~--~~~~~~v~~~~~~~~~~~~~~~G~ 76 (177)
T COG0456 10 DKVTIREAINKDLLDVALAALEARTFDIRLPW-----------SREYFEKDLTQ--APELLLVAETGGLDGLLDGKVVGF 76 (177)
T ss_pred cceehhhhhhcccchHHHHHHhhhcCCCCCcc-----------hHHHHHHHHhh--CcceeEEEEecccCCCcccceeEE
Confidence 35679999999999 7777777666321111 11223222222 23344445431 22 59999
Q ss_pred EecccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHH
Q psy16071 82 ALNGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIA 161 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a 161 (225)
+.......... . ....++..++|+|+|||+|||++|++++++.+
T Consensus 77 ~~~~~~~~~~~-----------------------------------~-~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~ 120 (177)
T COG0456 77 LLVRVVDGRPS-----------------------------------A-DHEGHIYNLAVDPEYRGRGIGRALLDEALERL 120 (177)
T ss_pred EEEEEecCCcc-----------------------------------c-cCccEEEEEEEChHhhcCCHHHHHHHHHHHHH
Confidence 98531111000 0 12358999999999999999999999999999
Q ss_pred HHcCC-cEE--EEEecCHHHHHHHHHcCCeEEEEEe
Q psy16071 162 SKAGF-KVF--KVDATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 162 ~~~g~-~~~--~~~~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
++.|. ..+ .+..+|..+++||+|+||+.++...
T Consensus 121 ~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~ 156 (177)
T COG0456 121 RERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRK 156 (177)
T ss_pred HhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeeh
Confidence 99886 554 4556899999999999999988765
No 38
>PRK01346 hypothetical protein; Provisional
Probab=99.48 E-value=9.4e-13 Score=110.85 Aligned_cols=133 Identities=17% Similarity=0.116 Sum_probs=92.4
Q ss_pred cceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccC
Q psy16071 10 EIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHE 89 (225)
Q Consensus 10 ~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~ 89 (225)
..++||+++++|++++.++...+|.. .+ .......+. .....+..+++.+ +|++||++.......
T Consensus 5 ~~~~iR~~~~~D~~~i~~L~~~~f~~-~~------------~~~~~~~~~-~~~~~~~~~va~~-~~~lvg~~~~~~~~~ 69 (411)
T PRK01346 5 MAITIRTATEEDWPAWFRAAATGFGD-SP------------SDEELEAWR-ALVEPDRTLGAFD-GDEVVGTAGAFDLRL 69 (411)
T ss_pred CCceeecCCHHHHHHHHHHHHHHcCC-CC------------ChHHHHHHH-HhcCcCCeEEEEE-CCEEEEEEEEecccc
Confidence 35789999999999999999888842 11 011222222 2234455677765 589999987432110
Q ss_pred CChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEE
Q psy16071 90 GDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVF 169 (225)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~ 169 (225)
.-. .-...+..++..++|+|+|||+|||++|++++++.++++|+..+
T Consensus 70 ~~~---------------------------------~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~ 116 (411)
T PRK01346 70 TVP---------------------------------GGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVA 116 (411)
T ss_pred ccC---------------------------------CCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEE
Confidence 000 00012357899999999999999999999999999999999876
Q ss_pred EEEecCHHHHHHHHHcCCeEEEEE
Q psy16071 170 KVDATGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 170 ~~~~~n~~~~~~y~k~Gf~~~~~~ 193 (225)
.+...+ ..||+|+||+.....
T Consensus 117 ~L~~~~---~~~Y~r~Gf~~~~~~ 137 (411)
T PRK01346 117 ALTASE---GGIYGRFGYGPATYS 137 (411)
T ss_pred EEECCc---hhhHhhCCCeeccce
Confidence 655444 379999999877643
No 39
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.48 E-value=3.3e-13 Score=118.47 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=89.9
Q ss_pred ccceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEeccccc
Q psy16071 9 EEIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQH 88 (225)
Q Consensus 9 ~~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~ 88 (225)
+..++||+++++|++++.++....+.... .. +.... .+. . ..+..+++.+ +|++||++.....
T Consensus 461 ~~gm~IR~a~~~D~~~I~~L~~~~~~~~~------~~---~~~~~---~l~-~--~~~~~~Va~~-~g~IVG~~~l~~~- 523 (614)
T PRK12308 461 TSGVKVRPARLTDIDAIEGMVAYWAGLGE------NL---PRSRN---ELV-R--DIGSFAVAEH-HGEVTGCASLYIY- 523 (614)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHHhhhc------cc---ccCHH---HHh-c--ccCcEEEEEE-CCEEEEEEEEEEc-
Confidence 34688999999999999998754321100 00 10111 111 1 1133455544 6899999874321
Q ss_pred CCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE
Q psy16071 89 EGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV 168 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~ 168 (225)
+ ....++..++|+|+|||+|||++|++++++.|++.|++.
T Consensus 524 --~--------------------------------------~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~ 563 (614)
T PRK12308 524 --D--------------------------------------SGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKK 563 (614)
T ss_pred --C--------------------------------------CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCE
Confidence 0 123578899999999999999999999999999999998
Q ss_pred EEEEecCHHHHHHHHHcCCeEEEEEeccc
Q psy16071 169 FKVDATGVFSQKISTKLGLETLIELEYRN 197 (225)
Q Consensus 169 ~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~ 197 (225)
+.+.+. +.+||+|+||+..+...+..
T Consensus 564 i~l~~~---a~~FYek~GF~~~~~~~~~~ 589 (614)
T PRK12308 564 VFVLTR---VPEFFMKQGFSPTSKSLLPE 589 (614)
T ss_pred EEEeeC---cHHHHHHCCCEECCcccCCh
Confidence 776653 35899999999888766543
No 40
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.45 E-value=7.6e-12 Score=93.42 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=94.2
Q ss_pred cccceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHh---ccCCe--eEEEEecCCcEEEEE
Q psy16071 8 KEEIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILT---LQDNL--SVMAVNGNGQVIGVA 82 (225)
Q Consensus 8 ~~~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~va~~~~~~ivG~~ 82 (225)
..+.+.+|+++++|.+.+..++.+.- ...................+.++... ...+. .+++.+ +|++||++
T Consensus 7 ~t~rl~Lr~~~~~D~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~-~~~~iG~~ 82 (179)
T PRK10151 7 VSESLELHAVDESHVTPLHQLVCKNK---TWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFK-EDELIGVL 82 (179)
T ss_pred eCCcEEEEeCCHHHHHHHHHHHHHhH---HHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEE-CCEEEEEE
Confidence 34678999999999999999884321 00011000111111234444444432 12222 344444 58999998
Q ss_pred ecccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHH
Q psy16071 83 LNGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIAS 162 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~ 162 (225)
......+. .....+ .+.++|+|||+|+|+.+++.+++.+.
T Consensus 83 ~l~~~~~~---------------------------------------~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~ 122 (179)
T PRK10151 83 SFNRIEPL---------------------------------------NKTAYI-GYWLDESHQGQGIISQALQALIHHYA 122 (179)
T ss_pred EEEeeccC---------------------------------------CCceEE-EEEEChhhcCCcHHHHHHHHHHHHHH
Confidence 64322110 011233 35699999999999999999999996
Q ss_pred -HcCCcEEEEE--ecCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 163 -KAGFKVFKVD--ATGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 163 -~~g~~~~~~~--~~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
..|++.+.+. ..|.+|.++++|+||+..+...-..+
T Consensus 123 ~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~ 161 (179)
T PRK10151 123 QSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEY 161 (179)
T ss_pred hhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceE
Confidence 4688886644 47999999999999999998764443
No 41
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.44 E-value=8.1e-12 Score=93.86 Aligned_cols=143 Identities=17% Similarity=0.098 Sum_probs=92.4
Q ss_pred cccccceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhcc--CCeeEEEEecCCcEEEEEe
Q psy16071 6 MSKEEIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQ--DNLSVMAVNGNGQVIGVAL 83 (225)
Q Consensus 6 ~~~~~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~va~~~~~~ivG~~~ 83 (225)
|...+.+++|+++++|++.+.++..+.. ....+... ...........+..... ....+++.+ +|++||++.
T Consensus 1 ~~~~~~l~lR~~~~~D~~~l~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~iG~~~ 73 (186)
T PRK15130 1 MPSAHSVKLRPLEREDLRFVHQLDNNAS----VMRYWFEE--PYEAFVELSDLYDKHIHDQSERRFVVEC-DGEKAGLVE 73 (186)
T ss_pred CCCCCeeEEecCCHHHHHHHHHHhcChH----HHhhcCCc--ccccHHHHHHHHHHhhhcccCcEEEEEE-CCEEEEEEE
Confidence 3445578999999999999998754321 01111110 11011222223333222 234555554 599999986
Q ss_pred cccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHH-
Q psy16071 84 NGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIAS- 162 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~- 162 (225)
...... . .....+ .++|+|+|||+|+|+.+++.+++.+.
T Consensus 74 ~~~~~~--~-------------------------------------~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~ 113 (186)
T PRK15130 74 LVEINH--V-------------------------------------HRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFT 113 (186)
T ss_pred EEeecC--C-------------------------------------CCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhh
Confidence 422111 0 011223 48899999999999999999999996
Q ss_pred HcCCcEEEEEe--cCHHHHHHHHHcCCeEEEEEec
Q psy16071 163 KAGFKVFKVDA--TGVFSQKISTKLGLETLIELEY 195 (225)
Q Consensus 163 ~~g~~~~~~~~--~n~~~~~~y~k~Gf~~~~~~~~ 195 (225)
+.|+..+.+.+ .|.+|.++|+|+||+.++....
T Consensus 114 ~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~ 148 (186)
T PRK15130 114 VLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIH 148 (186)
T ss_pred cCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeh
Confidence 57998876554 7999999999999999887653
No 42
>PHA01807 hypothetical protein
Probab=99.42 E-value=6.5e-12 Score=90.83 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=81.5
Q ss_pred cCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccC-CeeEEEEecCCcEEEEEecccccCCChhHH
Q psy16071 17 IPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQD-NLSVMAVNGNGQVIGVALNGIQHEGDVDEA 95 (225)
Q Consensus 17 ~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~va~~~~~~ivG~~~~~~~~~~~~~~~ 95 (225)
++.+|++....+..+.+ .+.|..... .+ ..+....+....... ...+++.+ +|++||++...... ..
T Consensus 9 ~~~~d~~~~~~l~l~~l-~e~p~~~~w-~s----~ee~~~~~~~~~~~~~~~~lva~~-dg~lvG~~~l~~~~--~~--- 76 (153)
T PHA01807 9 AKAGTPSELQGLCWLAI-QELEEFTLF-RS----KEEALERILDSTESNDRTELLVFR-DGKLAGIAVLVFED--DP--- 76 (153)
T ss_pred hhhCCHHHHHHHHHHHH-HhCccCCCC-CC----hHHHHHHHHHHhhCCCceEEEEEE-CCEEEEEEEEEcCC--Cc---
Confidence 67789999999887776 333321000 00 112223333322222 33466655 59999998743211 10
Q ss_pred HHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE--Ee
Q psy16071 96 IKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV--DA 173 (225)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~--~~ 173 (225)
. ...++.+..|+|+|+|||+|||++|++.+++.|++.|+..+.. ..
T Consensus 77 ------------------------------~--~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~ 124 (153)
T PHA01807 77 ------------------------------H--VGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHRE 124 (153)
T ss_pred ------------------------------c--eeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 0 0123345668999999999999999999999999999998653 34
Q ss_pred cCHHHHHHHHHcC
Q psy16071 174 TGVFSQKISTKLG 186 (225)
Q Consensus 174 ~n~~~~~~y~k~G 186 (225)
+|.++.+||++.-
T Consensus 125 ~n~~a~~~y~~~~ 137 (153)
T PHA01807 125 GEGRYTIHYRRVK 137 (153)
T ss_pred CcHHHHHHHHhcC
Confidence 7999999999864
No 43
>PRK10314 putative acyltransferase; Provisional
Probab=99.42 E-value=2.8e-12 Score=93.25 Aligned_cols=125 Identities=11% Similarity=0.078 Sum_probs=82.9
Q ss_pred EEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCChh
Q psy16071 14 VYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGDVD 93 (225)
Q Consensus 14 ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~~~ 93 (225)
+..++.+++.+++++=.+.|..+-..... .... .........+++.+ ++++||++.+... .+.
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~~-e~D~------------~d~~~~~~h~~~~~-~~~~vg~~r~~~~--~~~- 71 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPYQ-DIDG------------DDLTGDNRHILGWK-NDELVAYARILKS--DDD- 71 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCcc-ccCC------------CCCCCCcEEEEEEE-CCEEEEEEEEecC--CCC-
Confidence 45567777888888877888633111100 0000 00011234455665 5899999874321 010
Q ss_pred HHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHc-CCcEEEEE
Q psy16071 94 EAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKA-GFKVFKVD 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~-g~~~~~~~ 172 (225)
....++..++|+|+|||+|||++|++.+++.+++. +...+.+.
T Consensus 72 ------------------------------------~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~ 115 (153)
T PRK10314 72 ------------------------------------LEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLG 115 (153)
T ss_pred ------------------------------------CCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEe
Confidence 11257999999999999999999999999999875 66655554
Q ss_pred ecCHHHHHHHHHcCCeEEEE
Q psy16071 173 ATGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 173 ~~n~~~~~~y~k~Gf~~~~~ 192 (225)
.+..+.+||+|+||+.+++
T Consensus 116 -a~~~a~~fY~k~GF~~~g~ 134 (153)
T PRK10314 116 -AQAHLQNFYQSFGFIPVTE 134 (153)
T ss_pred -hHHHHHHHHHHCCCEECCC
Confidence 4567889999999998875
No 44
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.42 E-value=2.3e-12 Score=103.67 Aligned_cols=124 Identities=16% Similarity=0.070 Sum_probs=80.9
Q ss_pred EecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHH-hccCCeeEEEEecCCcEEEEEecccccCCChh
Q psy16071 15 YPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSIL-TLQDNLSVMAVNGNGQVIGVALNGIQHEGDVD 93 (225)
Q Consensus 15 r~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~va~~~~~~ivG~~~~~~~~~~~~~ 93 (225)
.+++++|++++.+++...+..+. . .+ +.......+.. .......+++.+ ++++||++....... .
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~-------~--~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~--~- 69 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDG-------V--AP-VSEQVLRGLREPGAGHTRHLVAVD-SDPIVGYANLVPARG--T- 69 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCC-------C--CC-CCHHHHhhccccCCCCceEEEEEE-CCEEEEEEEEEcCCC--C-
Confidence 35789999999999987653211 0 11 12222222211 112234566665 589999987432110 0
Q ss_pred HHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEe
Q psy16071 94 EAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDA 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~ 173 (225)
..++..++|+|+|||+|||++|++++++.+.. .-.+.+..
T Consensus 70 --------------------------------------~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~~--~~~~~~~~ 109 (292)
T TIGR03448 70 --------------------------------------DPAMAELVVHPAHRRRGIGRALIRALLAKGGG--RLRVWAHG 109 (292)
T ss_pred --------------------------------------cceEEEEEECHhhcCCCHHHHHHHHHHHhccC--ceEEEEcC
Confidence 12467799999999999999999999998752 12233444
Q ss_pred cCHHHHHHHHHcCCeEEEE
Q psy16071 174 TGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 174 ~n~~~~~~y~k~Gf~~~~~ 192 (225)
.|..+++||+++||+....
T Consensus 110 ~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 110 DLPAARALASRLGLVPTRE 128 (292)
T ss_pred CCHHHHHHHHHCCCEEccE
Confidence 6889999999999987765
No 45
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.40 E-value=2.2e-11 Score=87.12 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=84.8
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc----cCC-eeEEEEecC-CcEEEEEecc
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL----QDN-LSVMAVNGN-GQVIGVALNG 85 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~va~~~~-~~ivG~~~~~ 85 (225)
+++|+++++|.+.+.++..+ .....................++.... ..+ ..+++.+.+ +++||++...
T Consensus 2 l~lr~~~~~D~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~ 76 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSD-----PEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLY 76 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTT-----TTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEcCCHHHHHHHHHHhcC-----HHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeee
Confidence 57999999999999998732 112222211121113344444544211 112 234555544 6899998752
Q ss_pred cccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHH-HHc
Q psy16071 86 IQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIA-SKA 164 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a-~~~ 164 (225)
.... ......+. +.|.|+|||+|+|+.++..+++++ ++.
T Consensus 77 ~~~~---------------------------------------~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~ 116 (142)
T PF13302_consen 77 NIDK---------------------------------------NNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEEL 116 (142)
T ss_dssp EEET---------------------------------------TTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTS
T ss_pred eccc---------------------------------------CCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 1111 12234554 789999999999999999999999 689
Q ss_pred CCcEEEEEe--cCHHHHHHHHHcCCe
Q psy16071 165 GFKVFKVDA--TGVFSQKISTKLGLE 188 (225)
Q Consensus 165 g~~~~~~~~--~n~~~~~~y~k~Gf~ 188 (225)
|+..+.+.+ .|.+|.++++|+||+
T Consensus 117 ~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 117 GLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 999876554 799999999999996
No 46
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.34 E-value=1e-11 Score=81.16 Aligned_cols=61 Identities=25% Similarity=0.173 Sum_probs=50.8
Q ss_pred EEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE-EEEEecCHHHHHHHHHcCCeEEEEEe
Q psy16071 134 ECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV-FKVDATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 134 ~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~-~~~~~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
.+..+.|+|+|||+|+|+.|+..+.+.+.+.|... +.+..+|..|+++|+|+||+...+..
T Consensus 23 ~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~klGf~~~~~~~ 84 (86)
T PF08445_consen 23 EIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEKLGFREIEEEY 84 (86)
T ss_dssp CEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHHCT-EEEEEEE
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHcCCEEEEEEE
Confidence 57889999999999999999999999999888876 34566899999999999999887653
No 47
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.33 E-value=4.5e-11 Score=87.03 Aligned_cols=138 Identities=14% Similarity=0.042 Sum_probs=88.9
Q ss_pred EEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccC-C-eeEEEEecCCcEEEEEecccccCC
Q psy16071 13 YVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQD-N-LSVMAVNGNGQVIGVALNGIQHEG 90 (225)
Q Consensus 13 ~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~va~~~~~~ivG~~~~~~~~~~ 90 (225)
.+|+++++|.+.+.++..+.. ...... ............++...... . ..+++. .+|++||++.......
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~vG~~~~~~~~~- 73 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPD-----VRANMY-SDHLIDWEEHLHFIEALKQDPNRRYWIVC-QESRPIGVISFTDINL- 73 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHH-----HHhhcc-CcCCCCHHHHHHHHHHhhcCCCceEEEEE-ECCEEEEEEEEEecCh-
Confidence 479999999999999865321 111111 01111223344454444332 2 234443 4699999987532110
Q ss_pred ChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHH-cCCcEE
Q psy16071 91 DVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASK-AGFKVF 169 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~-~g~~~~ 169 (225)
. .....+. +.+.|.+| +|||+.++..+++.|.+ .|++.+
T Consensus 74 -~-------------------------------------~~~~~~g-~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i 113 (156)
T TIGR03585 74 -V-------------------------------------HKSAFWG-IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKL 113 (156)
T ss_pred -h-------------------------------------hCeEEEE-EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEE
Confidence 0 0112333 34899999 99999999999999974 699887
Q ss_pred EEE--ecCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 170 KVD--ATGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 170 ~~~--~~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
.+. ..|.+++++|+|+||+..+...-..+
T Consensus 114 ~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~ 144 (156)
T TIGR03585 114 SLEVLEFNNKALKLYEKFGFEREGVFRQGIF 144 (156)
T ss_pred EEEEeccCHHHHHHHHHcCCeEeeeehhhee
Confidence 654 47999999999999999987654333
No 48
>PRK13688 hypothetical protein; Provisional
Probab=99.33 E-value=1.6e-11 Score=89.20 Aligned_cols=58 Identities=24% Similarity=0.242 Sum_probs=46.3
Q ss_pred CcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEE
Q psy16071 130 TSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~ 193 (225)
+..++|..++|+|+|||+|||++|+++ +++.++. +.+.+.| .+.+||+|+||+..++.
T Consensus 77 ~~~~~L~~l~V~p~~rgkGiG~~Ll~~----a~~~~~~-~~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 77 QDYLELWKLEVLPKYQNRGYGEMLVDF----AKSFQLP-IKTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred CCeEEEEEEEECHHHcCCCHHHHHHHH----HHHhCCe-EEEEecc-chHHHHHhCCCEEeEEe
Confidence 356789999999999999999999985 4455665 3444444 47899999999998877
No 49
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.31 E-value=1.8e-11 Score=97.68 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=51.8
Q ss_pred EEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEE
Q psy16071 134 ECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 134 ~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~ 193 (225)
.+..++|+|+|||+|||++|++++++.|+++|+..+.+.+++ .+..||+|+||+.++.+
T Consensus 27 ~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~-~~~~fYek~GF~~~~~~ 85 (297)
T cd02169 27 VLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKP-KNAKFFRGLGFKELANA 85 (297)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcc-cHHHHHHHCCCEEeccc
Confidence 367899999999999999999999999999999988877654 35799999999988833
No 50
>KOG3235|consensus
Probab=99.29 E-value=2.7e-11 Score=85.20 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=87.1
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc-cCCeeEEEEecCCcEEEEEecccccCC
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL-QDNLSVMAVNGNGQVIGVALNGIQHEG 90 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~~~~ivG~~~~~~~~~~ 90 (225)
+.||.++++|+-.+-.+-.-.. + -.-.+..++-+.+ ..+.|+||.|.+|+|||.++.....
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~l---------------p-ENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee-- 63 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNL---------------P-ENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEE-- 63 (193)
T ss_pred cccccCCHHHHHHhhhcccccC---------------c-HHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhh--
Confidence 3588888888765544321111 1 1123444444443 3578999998889999999864322
Q ss_pred ChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHH-cCCcEE
Q psy16071 91 DVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASK-AGFKVF 169 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~-~g~~~~ 169 (225)
+++ +..+.-+|..|||...||+.|||++|++.+.....+ .+.+.+
T Consensus 64 ~p~----------------------------------~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yv 109 (193)
T KOG3235|consen 64 DPD----------------------------------DEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYV 109 (193)
T ss_pred ccc----------------------------------CCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEE
Confidence 111 112245899999999999999999999997765543 444443
Q ss_pred --EEEecCHHHHHHHH-HcCCeEEEE
Q psy16071 170 --KVDATGVFSQKIST-KLGLETLIE 192 (225)
Q Consensus 170 --~~~~~n~~~~~~y~-k~Gf~~~~~ 192 (225)
-+..+|.++.++|+ .+||++...
T Consensus 110 sLHVR~SNraAl~LY~~tl~F~v~ev 135 (193)
T KOG3235|consen 110 SLHVRKSNRAALHLYKNTLGFVVCEV 135 (193)
T ss_pred EEeeecccHHHHHhhhhccceEEeec
Confidence 35569999999999 789987654
No 51
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.23 E-value=1.6e-10 Score=88.51 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=55.3
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE-EEEEecCHHHHHHHHHcCCeEEEEEec
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV-FKVDATGVFSQKISTKLGLETLIELEY 195 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~-~~~~~~n~~~~~~y~k~Gf~~~~~~~~ 195 (225)
+..+..++|+|+|||+|+|++|+..+-+..-..|... +++...|+.|.++|+|+||+..++...
T Consensus 201 ~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~riGF~~~g~~~~ 265 (268)
T COG3393 201 YAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQRIGFREIGEFRE 265 (268)
T ss_pred ceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHHhCCeecceEEE
Confidence 4578899999999999999999999888887666655 567779999999999999999987654
No 52
>KOG3234|consensus
Probab=99.12 E-value=6.4e-10 Score=78.25 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=71.1
Q ss_pred CCeeEEEEecCCcEEEEEecccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCc
Q psy16071 65 DNLSVMAVNGNGQVIGVALNGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNY 144 (225)
Q Consensus 65 ~~~~~va~~~~~~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~ 144 (225)
...+.++.+.+|+|.|.+++.+-. .. ..-+.|+..++|.|+|
T Consensus 40 pe~~~~a~~p~~~imgyimgk~Eg---~~-----------------------------------~~wh~HvTAltVap~~ 81 (173)
T KOG3234|consen 40 PEDFIVAEAPTGEIMGYIMGKVEG---KD-----------------------------------TEWHGHVTALTVAPDY 81 (173)
T ss_pred hHHhEeccCCCCceEEEEeeeccc---cC-----------------------------------cceeeEEEEEEechhH
Confidence 345566766669999999964321 11 1124688999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHcCCcE--EEEEecCHHHHHHHHHcCCeEEEEE
Q psy16071 145 RGRGLANELFKLSIDIASKAGFKV--FKVDATGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 145 rg~Gig~~L~~~~~~~a~~~g~~~--~~~~~~n~~~~~~y~k~Gf~~~~~~ 193 (225)
|+.|+|+.|++.+.+..+..+.-. +++-++|..|+.+|+++||.+..++
T Consensus 82 Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~V 132 (173)
T KOG3234|consen 82 RRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTV 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEEee
Confidence 999999999999999998764433 5677899999999999999887775
No 53
>KOG3138|consensus
Probab=99.10 E-value=5.8e-10 Score=82.23 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=57.4
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcC-CcEEE--EEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIASKAG-FKVFK--VDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g-~~~~~--~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
..++..++|.|.||.+|||+.|++++.+.+.... ++.+. +.++|..+..||++.||+++..+.+.
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~ 156 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNY 156 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccc
Confidence 6789999999999999999999999999998877 66544 56789999999999999999887643
No 54
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.09 E-value=1.1e-09 Score=88.87 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=52.7
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEe
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
+..++|+|+|||+|+|++|+.++++.+++.|+..+.+.+.+ .+..||+++||+.+....
T Consensus 53 ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~-~~~~fy~klGF~~i~~~~ 111 (332)
T TIGR00124 53 IKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKP-EYAALFEYCGFKTLAEAK 111 (332)
T ss_pred EEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECc-hHHHHHHHcCCEEeeeec
Confidence 66899999999999999999999999999999998887754 446899999999988765
No 55
>KOG4144|consensus
Probab=99.03 E-value=1.6e-10 Score=80.94 Aligned_cols=144 Identities=11% Similarity=0.069 Sum_probs=89.8
Q ss_pred cceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc--cCCe-----eEEEEecCCcEEEEE
Q psy16071 10 EIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL--QDNL-----SVMAVNGNGQVIGVA 82 (225)
Q Consensus 10 ~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~va~~~~~~ivG~~ 82 (225)
.-.+||+.-++|..++..+-...|.+++... .+..+..+.++. ..+. -++-+. .+.+||++
T Consensus 10 ~~~~irp~i~e~~q~~~~Lea~~FPe~eras-----------feii~~r~i~~pevc~glf~~~~h~~~~~-~~tLIghI 77 (190)
T KOG4144|consen 10 EAPRIRPGIPESCQRRHTLEASEFPEDERAS-----------FEIIRERFISVPEVCPGLFDEIRHFLTLC-EGTLIGHI 77 (190)
T ss_pred ccccCCCCChHHHHHHhccccccCChhHHHH-----------HHHHHHHHhcchhhcchhhhhHHhhhhhc-cccceehh
Confidence 3457999999999999988777773332211 111222222211 0110 111111 38899999
Q ss_pred ecccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHH
Q psy16071 83 LNGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIAS 162 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~ 162 (225)
++..|..+.... +-|.. +...+...+++.++|+|+||.+|+|..|+..-++..-
T Consensus 78 igs~~~~E~lt~-----------------ESm~k---------h~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~ 131 (190)
T KOG4144|consen 78 IGSLWDKERLTQ-----------------ESMTK---------HRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLG 131 (190)
T ss_pred hcccCcchhhhH-----------------HHHhh---------hhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhh
Confidence 976654432211 11111 1112334899999999999999999999999888776
Q ss_pred HcCCcE-EEEEecCHHHHHHHHHcCCeEEEE
Q psy16071 163 KAGFKV-FKVDATGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 163 ~~g~~~-~~~~~~n~~~~~~y~k~Gf~~~~~ 192 (225)
++-+.. +.+. ..++-+.||+++||+.++.
T Consensus 132 ~q~i~~r~~Li-~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 132 SQPIVRRAALI-CHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred cCccccceeee-ecCCccchhHhcCceeecc
Confidence 665544 3333 4566789999999999886
No 56
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.00 E-value=4.7e-09 Score=73.08 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=51.9
Q ss_pred EEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEec
Q psy16071 133 FECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEY 195 (225)
Q Consensus 133 ~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~ 195 (225)
..|..++|+|++||+|+|++||..+++.|.+..-..-.........+.||.++||..+++..+
T Consensus 77 ~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~~GFv~~~e~yl 139 (155)
T COG2153 77 VSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYASFGFVRVGEEYL 139 (155)
T ss_pred eeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHHhCcEEcCchhh
Confidence 458999999999999999999999999998876444222335677889999999998887655
No 57
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=98.99 E-value=3.4e-08 Score=70.98 Aligned_cols=144 Identities=20% Similarity=0.147 Sum_probs=93.0
Q ss_pred ceEEEecCCCCHHHHHHHHHhhccCCC-cchh-hccccCCCCCcHHHHHHHHHh--------ccCC----eeEEEEecCC
Q psy16071 11 IDYVYPIPEDKYNDVIEHLRYNFFADE-PLNK-CVGLCETGRGHSELELHSILT--------LQDN----LSVMAVNGNG 76 (225)
Q Consensus 11 ~~~ir~~~~~D~~~i~~ll~~~f~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~----~~~va~~~~~ 76 (225)
.+.++..+..|.++++++..+ |.... +... ...... ....++.++... .+.+ ..+++++.++
T Consensus 3 ~~~l~~p~L~~k~a~le~~~e-~~~~~~~~~~~~~~~~~---~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~ 78 (174)
T COG3981 3 EMKLRRPTLKDKDAFLEMKKE-FLTDGSTEAGAAWKADY---EQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDG 78 (174)
T ss_pred cccccCCchhhHHHHHHHHHh-hhhcCCcccCceeeccc---ccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCC
Confidence 566888999999999997654 33222 2221 111110 112334444331 1122 3467888789
Q ss_pred cEEEEEecccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHH
Q psy16071 77 QVIGVALNGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKL 156 (225)
Q Consensus 77 ~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~ 156 (225)
++||++-+... ..+. | .+. + + || ...|.|..||+|+|+.+++.
T Consensus 79 ~ivG~i~lRh~-Ln~~---------------------l---------l~~-g-G---HI-GY~VrPseR~KGYA~emLkl 121 (174)
T COG3981 79 QIVGFINLRHQ-LNDF---------------------L---------LEE-G-G---HI-GYSVRPSERRKGYAKEMLKL 121 (174)
T ss_pred cEEEEEEeeee-cchH---------------------H---------Hhc-C-C---cc-cceeChhhhccCHHHHHHHH
Confidence 99999975321 1111 0 000 1 1 22 25699999999999999999
Q ss_pred HHHHHHHcCCcEEEEEe--cCHHHHHHHHHcCCeEEEEEec
Q psy16071 157 SIDIASKAGFKVFKVDA--TGVFSQKISTKLGLETLIELEY 195 (225)
Q Consensus 157 ~~~~a~~~g~~~~~~~~--~n~~~~~~y~k~Gf~~~~~~~~ 195 (225)
+++.|+++|++.+.+.| .|.+|.+.-++.|=....++..
T Consensus 122 ~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NGGile~~~~~ 162 (174)
T COG3981 122 ALEKARELGIKKVLVTCDKDNIASRKVIEANGGILENEFFG 162 (174)
T ss_pred HHHHHHHcCCCeEEEEeCCCCchhhHHHHhcCCEEeEEEcc
Confidence 99999999999977666 6999999999998766665543
No 58
>KOG3397|consensus
Probab=98.91 E-value=1.6e-08 Score=72.47 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEeccc
Q psy16071 129 VTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYRN 197 (225)
Q Consensus 129 ~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~ 197 (225)
.+..+.+..+.|+.++||+|.|+.||+..+.+|+..|++.+++.+..+ .+||+++||+...-+....
T Consensus 80 ~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ--~~FYe~lGYe~c~Pi~~~~ 146 (225)
T KOG3397|consen 80 RDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ--CRFYESLGYEKCDPIVHST 146 (225)
T ss_pred CCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc--hhhhhhhcccccCceeccc
Confidence 345688999999999999999999999999999999999877655443 5899999999877665433
No 59
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.89 E-value=7.8e-08 Score=71.79 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=47.5
Q ss_pred CcEEEEEEEEEcCCcccCCHHHHHHHHHHHHH-------------------------HHcCCcEEEE-EecCHHHHHHHH
Q psy16071 130 TSIFECRILSVDNNYRGRGLANELFKLSIDIA-------------------------SKAGFKVFKV-DATGVFSQKIST 183 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a-------------------------~~~g~~~~~~-~~~n~~~~~~y~ 183 (225)
-..+-+..|+|+|++||+|||++|++.+.+.+ +..++..+-+ .-.++.-.+||.
T Consensus 88 l~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~ 167 (196)
T PF13718_consen 88 LSGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ 167 (196)
T ss_dssp SEEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH
T ss_pred hcceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH
Confidence 45688999999999999999999999999999 4778887543 335788889999
Q ss_pred HcCCeEEEEEecccccccCCCc
Q psy16071 184 KLGLETLIELEYRNHLDSATGL 205 (225)
Q Consensus 184 k~Gf~~~~~~~~~~~~~~~~g~ 205 (225)
|.||..+. +..-.|..+|+
T Consensus 168 k~gf~pv~---l~~~~n~~SGe 186 (196)
T PF13718_consen 168 KNGFVPVY---LGQTRNEASGE 186 (196)
T ss_dssp CTT-EEEE---E-SS--TTT--
T ss_pred HCCcEEEE---EecCcccccCc
Confidence 99998774 44444435553
No 60
>KOG2488|consensus
Probab=98.83 E-value=1.5e-08 Score=73.74 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=55.8
Q ss_pred CcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE--EEEEecCHHHHHHHHHcCCeEEEEEe
Q psy16071 130 TSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV--FKVDATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~--~~~~~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
.+++|+..+=|.++|||+|||+.|++.+...+.....+. +++...|.++.+||.++||....+.+
T Consensus 118 ~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~sp 184 (202)
T KOG2488|consen 118 DPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEESP 184 (202)
T ss_pred CeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCCCC
Confidence 468899999999999999999999999999998777764 45677899999999999997655444
No 61
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=98.83 E-value=8.8e-08 Score=75.11 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=48.4
Q ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecccccc
Q psy16071 137 ILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYRNHLD 200 (225)
Q Consensus 137 ~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~ 200 (225)
.|.++|+|||+|||+.+....+..|.++|+.- ..+|.|.+|.++-+|+||+...+.+.-...|
T Consensus 193 ~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P-~WDc~N~~S~~lA~kLGf~~~~~Y~~Y~v~~ 255 (265)
T PF12746_consen 193 DIETHPEYRGKGLATAVAAAFILECLENGLYP-SWDCHNLASIALAEKLGFHFDFEYTAYEVNN 255 (265)
T ss_dssp EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EE-E-EESSHHHHHHHHHCT--EEEEEEEE----
T ss_pred EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCc-CeeCCCHHHHHHHHHcCCcccceeeeeeecc
Confidence 47899999999999999999999999999975 6788999999999999999888655443333
No 62
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.80 E-value=4.9e-08 Score=83.74 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=46.7
Q ss_pred EcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEE
Q psy16071 140 VDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 140 V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~ 192 (225)
++|+|||+|+|++|++++++.|++.|++.+.+ .+|..+.+||+|+||+..++
T Consensus 465 ~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v-~s~~~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 465 GDDEWQHRGYGRRLLEEAERIAAEEGSEKILV-ISGIGVREYYRKLGYELDGP 516 (522)
T ss_pred CChhHhCcCHHHHHHHHHHHHHHHCCCCEEEE-eeCchHHHHHHHCCCEEEcc
Confidence 46999999999999999999999999998776 45888999999999987764
No 63
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=6.3e-07 Score=66.63 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=52.0
Q ss_pred EEEEcCCcccCCHHHHHHHHHHHHHH-HcCCcEEEEE--ecCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 137 ILSVDNNYRGRGLANELFKLSIDIAS-KAGFKVFKVD--ATGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 137 ~l~V~p~~rg~Gig~~L~~~~~~~a~-~~g~~~~~~~--~~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
...+.|+|+|+|+|+..+..+++.+- +.|+..+.+. ..|.+|+++++|+||+..+......+
T Consensus 100 g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~~~~ 164 (187)
T COG1670 100 GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGELRQHEF 164 (187)
T ss_pred EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhhhhhhcee
Confidence 34469999999999999999999995 5899887654 47999999999999999887655533
No 64
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.59 E-value=5.1e-07 Score=57.69 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=42.9
Q ss_pred cEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHc
Q psy16071 131 SIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKL 185 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~ 185 (225)
..+.+....|.|++||||||++|++.+++.|++.|.+. ..+.+++.++++|+
T Consensus 21 ~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv---~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 21 GVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKV---VPTCSYVAKYFRRH 72 (78)
T ss_dssp SEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EE---EETSHHHHHHHHH-
T ss_pred CEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEE---EEECHHHHHHHHhC
Confidence 46788999999999999999999999999999999873 34668888888876
No 65
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.58 E-value=5.1e-07 Score=54.41 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=36.5
Q ss_pred cEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE
Q psy16071 131 SIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV 171 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~ 171 (225)
...++..++|+|+|||+|+|++|+..+++.+.+.|+..+.+
T Consensus 24 ~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 24 DTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred ccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 34788889999999999999999999999999999887643
No 66
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=98.51 E-value=1.9e-07 Score=60.19 Aligned_cols=58 Identities=29% Similarity=0.410 Sum_probs=51.5
Q ss_pred EEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEE-EEEecCHHHHHHHHHcCCeEE
Q psy16071 133 FECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVF-KVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 133 ~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~-~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
..+...++.|+|||||+.+.++....+.+.++|++.. .++..|..++++.+++||...
T Consensus 20 ge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~~~ 78 (89)
T PF08444_consen 20 GEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFIFM 78 (89)
T ss_pred ccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCeec
Confidence 4567788999999999999999999999999999973 366689999999999999754
No 67
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.37 E-value=7.6e-06 Score=72.38 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=57.4
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE-EecCHHHHHHHHHcCCeEEEEEecccccccCCCccc
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV-DATGVFSQKISTKLGLETLIELEYRNHLDSATGLPM 207 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~-~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~ 207 (225)
.+-|..|+|+|++|++|||++|++.+.+.|+ .|+..+-+ .-.++.-.+||.|.||..+. .....|..+|+..
T Consensus 531 G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~rnGF~pVh---ls~~rn~~SGeys 603 (758)
T COG1444 531 GWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLRNGFVPVH---LSPTRNASSGEYT 603 (758)
T ss_pred eeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHHcCeEEEE---ecCccCcCCCcee
Confidence 4789999999999999999999999999998 56665443 33578889999999998874 4455544667654
No 68
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.33 E-value=5.1e-06 Score=56.95 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=62.5
Q ss_pred cccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEe----cCHHHHHHHHHcCCeEEEEEeccc
Q psy16071 123 LFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDA----TGVFSQKISTKLGLETLIELEYRN 197 (225)
Q Consensus 123 ~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~----~n~~~~~~y~k~Gf~~~~~~~~~~ 197 (225)
..++|. +.+|+..+.|....||+|+|++|..-+.+.|+..|+..++++. .|+++-.|...+||..+++-...+
T Consensus 77 FrErYe--~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihg 153 (167)
T COG3818 77 FRERYE--NFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHG 153 (167)
T ss_pred hhhhCC--ceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEec
Confidence 345553 5789999999999999999999999999999999999876543 689999999999999998766543
No 69
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.27 E-value=5.5e-06 Score=66.30 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=52.8
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
.-.+..+++.|+|||+|..++|+.+.+...++.|++...+. +.+.++|+|.||+.-..+.+-.+
T Consensus 70 t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~---P~s~~iYrKfGye~asn~~~~~~ 133 (389)
T COG4552 70 TAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH---PFSGGIYRKFGYEYASNYHELTF 133 (389)
T ss_pred ccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec---cCchhhHhhccccccceEEEeec
Confidence 34688999999999999999999999999999999964433 56678999999998776444333
No 70
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.19 E-value=3.1e-06 Score=57.41 Aligned_cols=44 Identities=27% Similarity=0.509 Sum_probs=41.2
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCC
Q psy16071 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGL 187 (225)
Q Consensus 138 l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf 187 (225)
++|+|+|||+|||++|++.+++.++..|+. .+..+..+|.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce------ehHHHHHHHHhcCC
Confidence 999999999999999999999999998876 77888999999998
No 71
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.10 E-value=1.7e-05 Score=52.65 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=36.4
Q ss_pred cEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEec
Q psy16071 131 SIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDAT 174 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~ 174 (225)
..+.+..-.|.+++||||+|++|++.+++.|++.|.+. .-.|+
T Consensus 38 ~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~ki-iP~Cs 80 (99)
T COG2388 38 NLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKI-IPLCS 80 (99)
T ss_pred CEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeE-cccch
Confidence 35677888899999999999999999999999999973 33444
No 72
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.99 E-value=0.00037 Score=48.15 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=37.4
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEec-----C-HHHHHHHHHcCCeE
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDAT-----G-VFSQKISTKLGLET 189 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~-----n-~~~~~~y~k~Gf~~ 189 (225)
...+..+||++.-||+|+|..|++.+...+ -+++...+... + .....|....||..
T Consensus 61 ~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~ 122 (128)
T PF12568_consen 61 QAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAAFMQACGFSA 122 (128)
T ss_dssp EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE
T ss_pred ceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHHHHHHcCccc
Confidence 467999999999999999999999998888 34444443322 2 44458889999954
No 73
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.87 E-value=0.00048 Score=50.98 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=49.3
Q ss_pred CcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHc-CCeEEEE-Eecccc
Q psy16071 130 TSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKL-GLETLIE-LEYRNH 198 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~-Gf~~~~~-~~~~~~ 198 (225)
.+..+++...++|+|||+|+++.+-+.+.+..+.-+-. +. .+.+..+.++|.+. ||...+. ..|..+
T Consensus 76 ~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~~~N-~~-~~~~~~~~~~w~k~~G~~~~~h~~~y~S~ 144 (181)
T PF06852_consen 76 KPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSVDDN-SV-AQGNVKMSNFWHKMFGFDDYGHDWYYVSY 144 (181)
T ss_pred CCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccCCCc-ee-eecCHHHHHHHHHHhCCCCCccceeEeee
Confidence 46789999999999999999976555566665554444 23 35777888999885 9988877 555554
No 74
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0007 Score=51.06 Aligned_cols=124 Identities=13% Similarity=0.161 Sum_probs=81.6
Q ss_pred EEEe-cCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhc-cCCeeEEEEecCCcEEEEEecccccCC
Q psy16071 13 YVYP-IPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTL-QDNLSVMAVNGNGQVIGVALNGIQHEG 90 (225)
Q Consensus 13 ~ir~-~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~~~~ivG~~~~~~~~~~ 90 (225)
.+|. -.+.+++++.++...++..++. .......++... ..|..+-|++.+|++||++...+-..
T Consensus 4 vvrrl~dp~el~~~~dV~~~aWg~~d~-------------~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r- 69 (266)
T COG3375 4 VVRRLTDPAELDEAEDVQASAWGSEDR-------------DGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGR- 69 (266)
T ss_pred eEEecCCHHHHHHHHHHHHHHhCcccc-------------ccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcC-
Confidence 3444 4567888999988877743210 111122222222 35677778887789999998543111
Q ss_pred ChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEE
Q psy16071 91 DVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFK 170 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~ 170 (225)
+..-+.|-|.++|.|+++|.|+|-+|=..--+.+.++|+..+.
T Consensus 70 -------------------------------------~g~~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~ 112 (266)
T COG3375 70 -------------------------------------GGSLYLYSHMLGVREEVKGSGLGVALKMKQRERALSMGYTLIA 112 (266)
T ss_pred -------------------------------------CCceeeeeeehhccccccccchhhhhHHHHHHHHHhcCeeeEE
Confidence 1123578899999999999999999999999999999998754
Q ss_pred EE--ecCHHHHHH-HHHcCC
Q psy16071 171 VD--ATGVFSQKI-STKLGL 187 (225)
Q Consensus 171 ~~--~~n~~~~~~-y~k~Gf 187 (225)
.. .-|..+.+| ..|+|-
T Consensus 113 WTfDPl~alNA~fNi~KLGa 132 (266)
T COG3375 113 WTFDPLNALNARFNISKLGA 132 (266)
T ss_pred Eecccchhhhhhcchhhhce
Confidence 32 235555555 566774
No 75
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.80 E-value=0.001 Score=46.99 Aligned_cols=113 Identities=13% Similarity=0.040 Sum_probs=75.2
Q ss_pred ceEEEec-CCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCC-eeEEEEecCCcEEEEEeccccc
Q psy16071 11 IDYVYPI-PEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDN-LSVMAVNGNGQVIGVALNGIQH 88 (225)
Q Consensus 11 ~~~ir~~-~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~va~~~~~~ivG~~~~~~~~ 88 (225)
.++++.. .++|++++.+++.+.+... .+....+.....+..++......+ ..+.+...+|++||+.++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~- 91 (142)
T PF13480_consen 19 GVRFEVATDPADLEAFYELYRESWARR------HGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRH- 91 (142)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHhhh------hCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEE-
Confidence 4566654 5778888888887665322 011111223455666666554333 344444446999999875321
Q ss_pred CCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE
Q psy16071 89 EGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV 168 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~ 168 (225)
+..++....+++|+++..++|..|+..+++.|.+.|++.
T Consensus 92 -----------------------------------------~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~ 130 (142)
T PF13480_consen 92 -----------------------------------------GGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRY 130 (142)
T ss_pred -----------------------------------------CCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCE
Confidence 235677888999999999999999999999999999986
Q ss_pred EEE
Q psy16071 169 FKV 171 (225)
Q Consensus 169 ~~~ 171 (225)
+-.
T Consensus 131 ~d~ 133 (142)
T PF13480_consen 131 FDF 133 (142)
T ss_pred EEE
Confidence 433
No 76
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.79 E-value=0.00058 Score=49.04 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=71.5
Q ss_pred ccceEEEecCC---CCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhcc-C----CeeEEEE-ecCCcEE
Q psy16071 9 EEIDYVYPIPE---DKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQ-D----NLSVMAV-NGNGQVI 79 (225)
Q Consensus 9 ~~~~~ir~~~~---~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~va~-~~~~~iv 79 (225)
++.|....++- ++++++.++|.++|..|+..+.- .....++++-++. . ...+.+. ..++++|
T Consensus 21 P~gF~W~~~dl~d~~~l~ely~lL~~nYVEDdd~~fR---------f~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLv 91 (162)
T PF01233_consen 21 PDGFEWSTLDLNDDEELKELYELLNENYVEDDDNMFR---------FDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLV 91 (162)
T ss_dssp STTEEEEE--TTSHHHHHHHHHHHHHHSSBTTTSSEE---------E---HHHHHHHHTSTT--GGGEEEEEETTTTEEE
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCccCCcceEE---------eeCCHHHHhheeeCcCCccceEEEEEECCCCEEE
Confidence 34677777765 45677899999999765433221 1222333333322 2 2344443 3349999
Q ss_pred EEEecccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHH
Q psy16071 80 GVALNGIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSID 159 (225)
Q Consensus 80 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~ 159 (225)
|++.+.+..-. +.+ ..-.+.++..||||+++|.++++-.|++++..
T Consensus 92 gfIsaip~~ir--------------------------------v~~--~~~~~~eINFLCVhKklRskrlAPvLIkEItR 137 (162)
T PF01233_consen 92 GFISAIPATIR--------------------------------VRD--KVIKMVEINFLCVHKKLRSKRLAPVLIKEITR 137 (162)
T ss_dssp EEEEEEEEEEE--------------------------------ETT--EEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHH
T ss_pred EEEccceEEEE--------------------------------Eee--eEeeeeeEEEEeecHhHhhcCCcHHHHHHHHH
Confidence 99985432110 000 11346789999999999999999999999999
Q ss_pred HHHHcCCcE
Q psy16071 160 IASKAGFKV 168 (225)
Q Consensus 160 ~a~~~g~~~ 168 (225)
++...|+-.
T Consensus 138 Rvn~~gI~q 146 (162)
T PF01233_consen 138 RVNLQGIWQ 146 (162)
T ss_dssp HHHTTT--E
T ss_pred HhhhcCcee
Confidence 999999865
No 77
>KOG4135|consensus
Probab=97.70 E-value=0.00021 Score=50.32 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=50.3
Q ss_pred EEEEEEEEcCCcccCCHHHHHHHHHHHHHH-HcCCcEE--EEEecCHHHHHHHHHcCCeEEEEEec
Q psy16071 133 FECRILSVDNNYRGRGLANELFKLSIDIAS-KAGFKVF--KVDATGVFSQKISTKLGLETLIELEY 195 (225)
Q Consensus 133 ~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~-~~g~~~~--~~~~~n~~~~~~y~k~Gf~~~~~~~~ 195 (225)
..+..+.-.|..||+|+|+..+...+.++- .+++... .+...|.++.++|+|++|..+....+
T Consensus 108 gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~ns~ 173 (185)
T KOG4135|consen 108 GEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYNSS 173 (185)
T ss_pred eeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeeecc
Confidence 456667779999999999999999999995 4566553 35567999999999999988765433
No 78
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.62 E-value=0.0027 Score=49.95 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=50.7
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEe
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
+--+||+|.+||-|++-+|+.++++.+-++|...+.+.+- +.+..+|+.+||..+..+.
T Consensus 59 ikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTK-p~~~~lFk~~GF~~i~~~~ 117 (352)
T COG3053 59 IKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTK-PEYAALFKQCGFSEIASAE 117 (352)
T ss_pred eEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEec-hhHHHHHHhCCceEeeccC
Confidence 4568999999999999999999999999999998877654 5567999999998776553
No 79
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.08 E-value=0.02 Score=46.74 Aligned_cols=156 Identities=15% Similarity=0.147 Sum_probs=72.8
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHH---hc---------cCCeeEEEEecC-CcE
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSIL---TL---------QDNLSVMAVNGN-GQV 78 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~va~~~~-~~i 78 (225)
+.||+++.+|++++..+...+= + +++.-+...+.+...+.+ .. ++...+|..|.+ |+|
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg----~-----G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~v 72 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESG----P-----GFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEV 72 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-----T-----T-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--E
T ss_pred eEEecCchhhHHHHHHHHHHcC----C-----CcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcE
Confidence 5799999999999999887641 1 111112233444433322 11 112345566655 999
Q ss_pred EEEEecccccCCChhHHHHHHh-h--hCChhHHHHHHHHHHhhhcc---ccccccCCCcEEEEEEEEEcCCcccCCHHHH
Q psy16071 79 IGVALNGIQHEGDVDEAIKKLE-T--LNDKKFKQIFSMLYDLNQSL---NLFSRYDVTSIFECRILSVDNNYRGRGLANE 152 (225)
Q Consensus 79 vG~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~ 152 (225)
||++.+....-.+ ++...+-. . -.++.. .+.... .++..+ ..+-.+..|.++|+|||.|.|+.
T Consensus 73 vGts~I~a~vG~~-~PfY~yr~~~~vh~S~~L--------~v~~~~~~L~L~~d~--tG~sEl~tLfL~p~~R~~~~G~l 141 (342)
T PF04958_consen 73 VGTSAIEAAVGLD-EPFYSYRVSTLVHASREL--------GVRNRHETLTLSNDY--TGCSELCTLFLDPDYRGGGNGRL 141 (342)
T ss_dssp EEEEEEESSTTSS-S---EEEEEEEEEEETTT--------TEEEEEEEEEEE-TT--TTSEEEEEEEE-GGGTTSHHHHH
T ss_pred EEEEeEEeccCCC-CCcEEEEcCceeEcCccc--------CCccceeeEeeecCC--CCCeeeEEEEECHHHcCCchHHH
Confidence 9998764322111 11110000 0 000000 000000 011112 23568999999999999999999
Q ss_pred HHHHHHHHHHH--cCC-cEEEEEe----cCHHHHHHHHHcCC
Q psy16071 153 LFKLSIDIASK--AGF-KVFKVDA----TGVFSQKISTKLGL 187 (225)
Q Consensus 153 L~~~~~~~a~~--~g~-~~~~~~~----~n~~~~~~y~k~Gf 187 (225)
|-+.-.-+..+ .-+ +.++++. ..+..-+||+.+|=
T Consensus 142 LSr~RfLFiA~~~~rF~~~viAElrG~~De~G~SPFWdalG~ 183 (342)
T PF04958_consen 142 LSRSRFLFIAQHRERFADRVIAELRGVSDEDGRSPFWDALGR 183 (342)
T ss_dssp HHHHHHHHHHH-GGGS-SEEEEE--B---TT---HHHHHTGG
T ss_pred HHHHHHHHHHhChhhcchheeeeccCCcCCCCCCchHHHhhc
Confidence 98886655532 223 3344432 33444588888874
No 80
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=97.08 E-value=0.031 Score=42.71 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=48.2
Q ss_pred CCcEEEEEEEEEcCCcccC---C----HHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeE
Q psy16071 129 VTSIFECRILSVDNNYRGR---G----LANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 129 ~~~~~~l~~l~V~p~~rg~---G----ig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
...++.+..+||+|++++. + +...|+..+.+.+..+|+..+++.+ ++...+++.++||..
T Consensus 96 ~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~-~~~~~r~l~r~G~~~ 162 (207)
T PRK13834 96 HPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTAT-DLRFERILARAGWPM 162 (207)
T ss_pred CCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEE-CHHHHHHHHHcCCCe
Confidence 3568999999999986322 2 6678999999999999999876554 456778999999965
No 81
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=96.97 E-value=0.0014 Score=40.49 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=35.9
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEE---EEE-ecCHHHHHHHHHc
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVF---KVD-ATGVFSQKISTKL 185 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~---~~~-~~n~~~~~~y~k~ 185 (225)
.+-+..|-|+|.+|++|||++|++.+.+..- .|+..- ++. ..+.....|.+++
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~i-yG~~l~~~~iAFSqPT~~G~~fA~~y 61 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENFI-YGCVLPKNEIAFSQPTESGKKFAKKY 61 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhcc-CceEechhheEecCCCHhHHHHHHHH
Confidence 4668889999999999999999998876643 344320 111 1345556666654
No 82
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=96.91 E-value=0.033 Score=41.60 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=46.6
Q ss_pred CcEEEEEEEEEcCCccc------CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 130 TSIFECRILSVDNNYRG------RGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg------~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
..++.+..+||+|+.++ .-+...|+..+.+.|.++|+..++..+ +....+++.+.||...
T Consensus 88 ~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~-~~~~~r~l~r~G~~~~ 153 (182)
T PF00765_consen 88 PDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVV-DPAMERILRRAGWPVR 153 (182)
T ss_dssp TTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEE-EHHHHHHHHHCT-EEE
T ss_pred CcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEE-ChHHHHHHHHcCCceE
Confidence 56899999999998542 247789999999999999999977655 4667999999999764
No 83
>PRK10456 arginine succinyltransferase; Provisional
Probab=96.89 E-value=0.0073 Score=49.12 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=67.8
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHh-------c---cCCeeEEEEecC-CcEEE
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILT-------L---QDNLSVMAVNGN-GQVIG 80 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~va~~~~-~~ivG 80 (225)
+.||+++.+|++++..+...+= . +++.-+.....+...+.+. . +++..+|..|.+ |+|||
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG---~------G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvG 72 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTG---G------GLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAG 72 (344)
T ss_pred eEEecCccccHHHHHHHHHHcC---C------CcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEE
Confidence 5799999999999999877641 1 1222222334444433321 1 123445556645 99999
Q ss_pred EEecccccCCChhHHHHHH-h--hhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHH
Q psy16071 81 VALNGIQHEGDVDEAIKKL-E--TLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLS 157 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~ 157 (225)
++.+....--+ +++..+- . .-.++... +..-+ +-..+...+ ..+-.+..|.++|+||+-|.|+.|-+.-
T Consensus 73 ts~I~a~vG~~-~PfY~yr~~~~vhaS~~L~-v~~~~----~~L~l~nd~--tG~sElctLfl~p~~R~~~~G~LLSr~R 144 (344)
T PRK10456 73 ICAIEVAVGLN-DPWYNYRVGTLVHASKELN-VYNAL----PTLFLSNDH--TGSSELCTLFLDPDWRKEGNGYLLSKSR 144 (344)
T ss_pred EEeEEecccCC-CCCEEEEcCceeecCcccC-Cceee----eeEEeeccC--CCCceeEEEEECHHHcCCCchhHHHHHH
Confidence 98753221111 0100000 0 00000000 00000 000111122 2345789999999999999999888775
Q ss_pred HHHH
Q psy16071 158 IDIA 161 (225)
Q Consensus 158 ~~~a 161 (225)
.-+.
T Consensus 145 fLFi 148 (344)
T PRK10456 145 FMFM 148 (344)
T ss_pred HHHH
Confidence 4443
No 84
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.80 E-value=0.0019 Score=53.93 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=43.3
Q ss_pred cCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEE
Q psy16071 141 DNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 141 ~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
..+||.+|+|+.|++.++..|++.|+..+.+ .+.-.+...|.|+||+..+
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~v-iSgiG~ReYy~k~GY~~~g 508 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILV-ISGIGVREYYRKLGYELDG 508 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEE-EecccHHHHHHHhCccccC
Confidence 5789999999999999999999999877554 4677788999999998765
No 85
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=96.62 E-value=0.012 Score=47.71 Aligned_cols=131 Identities=16% Similarity=0.180 Sum_probs=65.9
Q ss_pred EEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHH---hc-------cCCeeEEEEecC-CcEEEEE
Q psy16071 14 VYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSIL---TL-------QDNLSVMAVNGN-GQVIGVA 82 (225)
Q Consensus 14 ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~va~~~~-~~ivG~~ 82 (225)
||+++.+|++++..+...+= - +++.-+.....+...+.+ .. ++...+|..|.+ |+|||++
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg---~------G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts 72 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESG---I------GLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVS 72 (335)
T ss_pred cccCccccHHHHHHHHHHcC---C------CcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEE
Confidence 79999999999999876641 1 111112233444333221 11 223445666655 9999998
Q ss_pred ecccccCCChhHHHHHH-h--hhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHH
Q psy16071 83 LNGIQHEGDVDEAIKKL-E--TLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSID 159 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~ 159 (225)
.+....-.+ +++..+- . ...++... +..-+ +-..+...+ ..+-.+..|.++|+||+-|.|+.|-+.-.-
T Consensus 73 ~I~a~vG~~-~PfY~yrv~~~vhaS~~L~-v~~~~----~~L~l~nd~--tG~sElctLfL~p~~R~~~~G~LLSr~RfL 144 (335)
T TIGR03243 73 AIEAAVGLD-EPFYNYRVGTLVHASRELG-VYNKI----PTLTLSNDL--TGSSELCTLFLDPDYRKGGNGRLLSRSRFL 144 (335)
T ss_pred eEEecccCC-CCCEEEEcCceeecCcccC-Cccce----eeEEeeccC--CCCeeeEEEEECHHHcCCCchhhHHHHHHH
Confidence 753221110 0100000 0 00010000 00000 000111112 234578999999999999999988877544
Q ss_pred HH
Q psy16071 160 IA 161 (225)
Q Consensus 160 ~a 161 (225)
+.
T Consensus 145 Fi 146 (335)
T TIGR03243 145 FI 146 (335)
T ss_pred HH
Confidence 43
No 86
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=96.51 E-value=0.016 Score=47.05 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=65.7
Q ss_pred EEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHh---c--------cCCeeEEEEecC-CcEEEE
Q psy16071 14 VYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILT---L--------QDNLSVMAVNGN-GQVIGV 81 (225)
Q Consensus 14 ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~va~~~~-~~ivG~ 81 (225)
||+++..|++++..+...+= - +++.-+...+.+...+.+. . +++..+|..|.+ |+|||+
T Consensus 2 iRpv~~~Dl~aL~~LA~~sG---~------G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGt 72 (336)
T TIGR03245 2 VRPSRFADLPAIERLANESA---I------GVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGT 72 (336)
T ss_pred cccCccccHHHHHHHHHHcC---C------CcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEE
Confidence 79999999999999877641 1 1111122334443332211 1 123455666655 999999
Q ss_pred EecccccCCChhHHHHHH-h--hhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHH
Q psy16071 82 ALNGIQHEGDVDEAIKKL-E--TLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSI 158 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~ 158 (225)
+.+....--+ +++..+- . .-.++... +..-+ +-..+...+ ..+-.|..|.++|+||+-|.|+.|-+.-.
T Consensus 73 s~I~a~vG~~-~PfY~yr~~~~vhaS~~L~-v~~~~----~~L~l~nd~--tG~sElctLfL~p~~R~~~~G~lLSr~Rf 144 (336)
T TIGR03245 73 SSIVASAGYG-EPFYSYRNDTLIHASRELK-VNNKI----HVLYMCHEL--TGSSLLCSFYVDPRLRKTEAAELLSRARL 144 (336)
T ss_pred EeEEecccCC-CCCEEEEcCceeecCcccC-Cccce----eeEEeeccC--CCCeeeEEEEECHHHcCCCchhHHHHHHH
Confidence 8753221110 0100000 0 00010000 00000 000111122 23457899999999999999998887754
Q ss_pred HHH
Q psy16071 159 DIA 161 (225)
Q Consensus 159 ~~a 161 (225)
-+.
T Consensus 145 LFi 147 (336)
T TIGR03245 145 LFM 147 (336)
T ss_pred HHH
Confidence 443
No 87
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=96.50 E-value=0.015 Score=47.19 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=66.2
Q ss_pred EEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHh-------cc---CCeeEEEEecC-CcEEEEE
Q psy16071 14 VYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILT-------LQ---DNLSVMAVNGN-GQVIGVA 82 (225)
Q Consensus 14 ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~va~~~~-~~ivG~~ 82 (225)
||+++.+|++++..+...+= - +++.-+.....+...+.+. .. ++..+|..|.+ |+|||++
T Consensus 2 vRPv~~~Dl~aL~~LA~~sg---~------G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts 72 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQSTG---I------GLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVS 72 (336)
T ss_pred cccCccccHHHHHHHHHHcC---C------CcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEE
Confidence 79999999999999877641 1 1222222334444433321 11 23445566655 9999998
Q ss_pred ecccccCCChhHHHHHH-h--hhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHH
Q psy16071 83 LNGIQHEGDVDEAIKKL-E--TLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSID 159 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~ 159 (225)
.+....--+ +++..+- . .-.++... +..-+ +-..+...+ ..+-.+..|.++|+||+-|.|+.|-+.-.-
T Consensus 73 ~I~a~vG~~-~PfY~yr~~~~vhaS~~L~-v~~~~----~~L~l~nd~--tG~SElctLfL~p~~R~~~~G~LLSr~RfL 144 (336)
T TIGR03244 73 AIEAAVGLE-EPFYNYRVGTVVHASKELG-IYKAL----ETLFLSNDL--TGYSELCTLFLDPDYRKGGNGRLLSKSRFL 144 (336)
T ss_pred eEEecccCC-CCCEEEEcCceeecCcccC-Cceee----eeEEeeccC--CCCeeeEEEEECHHHcCCcchhhHHHHHHH
Confidence 753221110 0100000 0 00000000 00000 000111112 234578999999999999999988776444
Q ss_pred HH
Q psy16071 160 IA 161 (225)
Q Consensus 160 ~a 161 (225)
+.
T Consensus 145 Fi 146 (336)
T TIGR03244 145 FI 146 (336)
T ss_pred HH
Confidence 33
No 88
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=96.34 E-value=0.024 Score=44.39 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=54.8
Q ss_pred CcEEEEEEEEEcCCcccC--------C--------------------HHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHH
Q psy16071 130 TSIFECRILSVDNNYRGR--------G--------------------LANELFKLSIDIASKAGFKVFKVDATGVFSQKI 181 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg~--------G--------------------ig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~ 181 (225)
..++.+..+||+|++|++ | +...|+..+.+.|.++|+..+++.+ .+.-.++
T Consensus 109 ~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~-~~~l~r~ 187 (241)
T TIGR03694 109 SRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIM-EPRLARL 187 (241)
T ss_pred CceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEe-CHHHHHH
Confidence 568999999999999974 2 5677999999999999999876554 4567789
Q ss_pred HHHcCCeEEEEEecccccccCCCcc
Q psy16071 182 STKLGLETLIELEYRNHLDSATGLP 206 (225)
Q Consensus 182 y~k~Gf~~~~~~~~~~~~~~~~g~~ 206 (225)
+.++|+... +...-.+ +.|.+
T Consensus 188 l~r~G~~~~---~lG~~~~-~~G~r 208 (241)
T TIGR03694 188 LSRFGIQFR---QVGPPVD-YHGLR 208 (241)
T ss_pred HHHhCCceE---EcCCCee-ECcEe
Confidence 999998663 3333333 55544
No 89
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.27 E-value=0.015 Score=49.06 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=82.2
Q ss_pred ceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhcc-CCeeEEEE---e--cCCcEEEEEec
Q psy16071 11 IDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQ-DNLSVMAV---N--GNGQVIGVALN 84 (225)
Q Consensus 11 ~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~va~---~--~~~~ivG~~~~ 84 (225)
.+++++..+.+++.+.++...+ ..++. +.. ...++-++++.. ++..++.+ | .|+-+||+++.
T Consensus 413 ~l~vs~~de~~i~RIsQLtqkT----NQFnl----Ttk----Ry~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv 480 (574)
T COG3882 413 RLTVSKFDEVNIPRISQLTQKT----NQFNL----TTK----RYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIV 480 (574)
T ss_pred EEEEeeccccCcHHHHHHhhcc----cceee----chh----hhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEE
Confidence 3579999999999999998754 11221 111 111222333222 23333333 2 23679999874
Q ss_pred ccccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHc
Q psy16071 85 GIQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKA 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~ 164 (225)
.... ..+.+..++.+--.=|++|-++|++.+++.|...
T Consensus 481 ~kk~------------------------------------------~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~ 518 (574)
T COG3882 481 EKKE------------------------------------------SEWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSE 518 (574)
T ss_pred EecC------------------------------------------CeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3211 1234444445555568999999999999999999
Q ss_pred CCcEEEEE----ecCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 165 GFKVFKVD----ATGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 165 g~~~~~~~----~~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
|+..+... .-|..-..||+++||+..+ -....|
T Consensus 519 gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~-eng~~f 555 (574)
T COG3882 519 GINTIRGYYIPTEKNAPVSDFYERMGFKLKG-ENGNKF 555 (574)
T ss_pred CcceeeeEecccccCCcHHHHHHHhcccccc-ccCCcc
Confidence 99875432 2477778999999999433 444444
No 90
>KOG2779|consensus
Probab=96.25 E-value=0.02 Score=46.37 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=46.3
Q ss_pred cEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE-E----EEEecCHHHHHHHHH-cCCeEEEEEeccc
Q psy16071 131 SIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV-F----KVDATGVFSQKISTK-LGLETLIELEYRN 197 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~-~----~~~~~n~~~~~~y~k-~Gf~~~~~~~~~~ 197 (225)
+...+..||||.+.|+++++=.|++++-.++.-.|+-. + ++..++...-+.|-| +..+..-.+.+..
T Consensus 166 k~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsLNpkKL~dv~Fs~ 238 (421)
T KOG2779|consen 166 KMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSLNPKKLIDVGFSH 238 (421)
T ss_pred eeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccCChhHeeEecccc
Confidence 46789999999999999999999999999998777743 1 122233333455533 4555555555543
No 91
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=96.15 E-value=0.01 Score=40.54 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=41.9
Q ss_pred cEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHc-CC
Q psy16071 131 SIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKL-GL 187 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~-Gf 187 (225)
++..+-.++|++..||+|+|++|+++.++.-.-. ...+.++..++.-..|.+|+ |-
T Consensus 45 ~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~e~~~-p~~~a~DrPS~Kll~Fl~Khy~L 101 (120)
T PF05301_consen 45 PLLCVLDFYVHESRQRRGYGKRLFDHMLQEENVS-PHQLAIDRPSPKLLSFLKKHYGL 101 (120)
T ss_pred ccceeeeEEEEeceeccCchHHHHHHHHHHcCCC-cccceecCCcHHHHHHHHHhcCC
Confidence 4446778899999999999999999987654322 22355677888888888775 53
No 92
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=95.98 E-value=0.059 Score=36.75 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=39.6
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCC
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGL 187 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf 187 (225)
+..+.+-..|||+|+|++-.+.....++ |.-.+.+...|..+..++++.-+
T Consensus 68 ~~efFIi~k~~~~GvGR~aaK~If~~~~--g~w~Va~i~EN~PA~~fwK~~~~ 118 (143)
T COG5628 68 VAEFFIVRKHRRRGVGRAAAKAIFGSAW--GVWQVATVRENTPARAFWKRVAE 118 (143)
T ss_pred chheEeeehhhccchhHHHHHHHHHHhh--ceEEEEEeccCChhHHHHHhhhc
Confidence 4556788899999999999988876554 44445556689999999999754
No 93
>KOG2535|consensus
Probab=95.94 E-value=0.01 Score=47.90 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=40.7
Q ss_pred CCcccCCHHHHHHHHHHHHHH-HcCCcEEEEEecCHHHHHHHHHcCCeEEE
Q psy16071 142 NNYRGRGLANELFKLSIDIAS-KAGFKVFKVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 142 p~~rg~Gig~~L~~~~~~~a~-~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
.+||.||.|+.|++.++..|+ ++|...+.+ .+.....++|.|+||+..+
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~Kiav-ISGVGtR~YY~klGY~LdG 546 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAV-ISGVGTRNYYRKLGYELDG 546 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEE-EeccchHHHHHhhCeeecC
Confidence 368999999999999999997 678877544 4666678899999998765
No 94
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=95.72 E-value=0.42 Score=33.75 Aligned_cols=140 Identities=11% Similarity=0.009 Sum_probs=63.5
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccccCCC
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQHEGD 91 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~~~~~ 91 (225)
+.+|++++.|++++-.+-...-...+|....+.--...........-++.....++||+|.++++.+.||++....+.
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~RsgHSFvA~~e~~~~~GfvLAQaVWQ-- 78 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYERSGHSFVAEDEGGELQGFVLAQAVWQ-- 78 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHCCS--EEEE-ETTEEEEEEEEEEEE---
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhccCCcEEEEccCCceeeeeehhHHhc--
Confidence 368999999999888773322212223221110000000011111123334468999999976799999999743222
Q ss_pred hhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE
Q psy16071 92 VDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~ 171 (225)
|..++..+..|.+.|. +......-|+..+.+-|-.-|.--+..
T Consensus 79 ------------------------------------GdrptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l 121 (161)
T PF09390_consen 79 ------------------------------------GDRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHL 121 (161)
T ss_dssp ------------------------------------SSSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred ------------------------------------CCCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEe
Confidence 2235567777766654 335777778888888887777655443
Q ss_pred EecCHHHHHHHHHcCCeEEE
Q psy16071 172 DATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 172 ~~~n~~~~~~y~k~Gf~~~~ 191 (225)
..+ +....-.+..||...+
T Consensus 122 ~l~-p~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 122 HLD-PELEAAARAEGFRLGG 140 (161)
T ss_dssp ----THHHHHHHHTT----S
T ss_pred eCC-HHHHHHHhhcccccCC
Confidence 333 2344455666777554
No 95
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.65 E-value=0.002 Score=53.51 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=45.5
Q ss_pred EEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE-----e--cCHHHHHHHHHcCCeEEE
Q psy16071 133 FECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD-----A--TGVFSQKISTKLGLETLI 191 (225)
Q Consensus 133 ~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~-----~--~n~~~~~~y~k~Gf~~~~ 191 (225)
..+..+.|||+||+-|||..-+..+.++..++-++-+.-. + .-..-..|+++.||+.+.
T Consensus 242 ariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 242 ARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 4578899999999999999999999999999888765421 1 111122689999998765
No 96
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.35 E-value=0.042 Score=40.86 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=28.0
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFKV 168 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~ 168 (225)
+.=|.|.|-||++|+|+-|++..=+.++..|..+
T Consensus 83 LsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~~~G 116 (188)
T PF01853_consen 83 LSCILTLPPYQRKGYGRFLIDFSYELSRREGKIG 116 (188)
T ss_dssp ESEEEE-GGGTTSSHHHHHHHHHHHHHHHTTS-B
T ss_pred EeehhhcchhhhcchhhhhhhhHHHHhhccCcCC
Confidence 4457899999999999999999999998877543
No 97
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.19 E-value=0.99 Score=34.16 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=45.9
Q ss_pred CcEEEEEEEEEcC--Ccc---cCC-HHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 130 TSIFECRILSVDN--NYR---GRG-LANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 130 ~~~~~l~~l~V~p--~~r---g~G-ig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
..++....++|++ .-+ +.. ++..|+--+++.+..+|++.+++. +.....+++.+.||...
T Consensus 96 p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtV-t~~~meril~r~Gw~~~ 161 (209)
T COG3916 96 PGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTV-TDTGMERILRRAGWPLT 161 (209)
T ss_pred CCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEE-EchHHHHHHHHcCCCeE
Confidence 3578889998886 222 233 477888999999999999986644 55777899999999654
No 98
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=94.50 E-value=1.2 Score=36.57 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=76.6
Q ss_pred cceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCee-EEEEecCCcEEEEEeccccc
Q psy16071 10 EIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLS-VMAVNGNGQVIGVALNGIQH 88 (225)
Q Consensus 10 ~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~va~~~~~~ivG~~~~~~~~ 88 (225)
..++++. .+|+++..+++..++.. .+.+ ......++..+... .+... +++.+.+|++||.++....
T Consensus 150 ~Gv~v~~--~~~l~~F~~l~~~t~~r-------~g~p--~~~~~~f~~l~~~~-~~~~~l~~a~~~~g~~va~~l~~~~- 216 (330)
T TIGR03019 150 AGLTVTV--DGDLDRFYDVYAENMRD-------LGTP--VFSRRYFRLLKDVF-GEDCEVLTVRLGDGVVASAVLSFYF- 216 (330)
T ss_pred CCeEEEE--CCcHHHHHHHHHHHHhc-------CCCC--CCCHHHHHHHHHhc-ccCEEEEEEEeCCCCEEEEEEEEEe-
Confidence 3466665 46788888888776521 1221 11334555544433 33333 3444346888888763211
Q ss_pred CCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcE
Q psy16071 89 EGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV 168 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~ 168 (225)
+ +..+ ....+.++++++.+-+..|+-++++.|.++|++.
T Consensus 217 ---------------------------------------~-~~~~-~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~ 255 (330)
T TIGR03019 217 ---------------------------------------R-DEVL-PYYAGGLREARDVAANDLMYWELMRRACERGLRV 255 (330)
T ss_pred ---------------------------------------C-CEEE-EEeccChHHHHhhChHHHHHHHHHHHHHHCCCcE
Confidence 0 1122 2245678999999999999999999999999987
Q ss_pred EEEEec--CHHHHHHHHHcCCeEEE
Q psy16071 169 FKVDAT--GVFSQKISTKLGLETLI 191 (225)
Q Consensus 169 ~~~~~~--n~~~~~~y~k~Gf~~~~ 191 (225)
.-.-.+ +....+|=++.|++.+.
T Consensus 256 fDfG~s~~~~G~~~FK~~~G~~~~~ 280 (330)
T TIGR03019 256 FDFGRSKRGTGPFKFKKNWGFEPQP 280 (330)
T ss_pred EEcCCCCCCCccHHHHhcCCCeecc
Confidence 432222 22344555667997654
No 99
>KOG3698|consensus
Probab=93.78 E-value=0.53 Score=40.94 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=94.3
Q ss_pred cccceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCeeEEEEecCCcEEEEEecccc
Q psy16071 8 KEEIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGVALNGIQ 87 (225)
Q Consensus 8 ~~~~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~~~ 87 (225)
...-|.||+.+..|-+.+-.+.+.-+.. ........ +.......-+.-.+.. .....|+++.|++++|||.+.+...
T Consensus 676 t~~~y~iRPy~~~De~~v~~~ct~my~d-~g~~lpf~-n~pn~~~d~ligglls-ls~~lC~v~~de~~~i~gYa~a~~D 752 (891)
T KOG3698|consen 676 TCMFYDIRPYTIADEEYVSGMCTVMYTD-NGELLPFR-NAPNFADDNLIGGLLS-LSEHLCEVVDDEGHKIVGYASAHFD 752 (891)
T ss_pred cceeEeeccCccccHHHHHhhhhheecc-CceeccCC-CCCccccccchhheec-cChhheeeeecCCCceeEEeeeecc
Confidence 3345789999999999999988877632 11111000 0000000001111111 1334788898877999999986433
Q ss_pred cCC---ChhHHHH-HHh------hh---CChhHHHHHHHHHHhhhccc-----------cccccCCCcEEEEEEEEEcCC
Q psy16071 88 HEG---DVDEAIK-KLE------TL---NDKKFKQIFSMLYDLNQSLN-----------LFSRYDVTSIFECRILSVDNN 143 (225)
Q Consensus 88 ~~~---~~~~~~~-~~~------~~---~~~~~~~~~~~l~~l~~~~~-----------~~~~~~~~~~~~l~~l~V~p~ 143 (225)
... ...--|. +.. .+ .++.......++..-.+..+ +++.|+ .+....++.+
T Consensus 753 vt~F~rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfP-----a~v~~~~~~~ 827 (891)
T KOG3698|consen 753 VTLFSRNFLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFP-----AWVETYFGMD 827 (891)
T ss_pred cchhhhceeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcCh-----HHHhhccccc
Confidence 210 1000011 110 00 11222222222221111111 112221 1223445666
Q ss_pred cccCCHHHHHHHHHHHHHHHcCCcEEEE--EecCHHHHHHHHHcCCeEEEE
Q psy16071 144 YRGRGLANELFKLSIDIASKAGFKVFKV--DATGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 144 ~rg~Gig~~L~~~~~~~a~~~g~~~~~~--~~~n~~~~~~y~k~Gf~~~~~ 192 (225)
.---|+.++++.-++.-.+..|..+..+ ......-++||.++||..++.
T Consensus 828 a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~ 878 (891)
T KOG3698|consen 828 ASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGL 878 (891)
T ss_pred cccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhH
Confidence 6678999999999999999999988544 335677789999999965543
No 100
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=93.75 E-value=0.58 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=29.0
Q ss_pred EcCCcccCCHHHHHHHHHHHHHHHcCCcEEE
Q psy16071 140 VDNNYRGRGLANELFKLSIDIASKAGFKVFK 170 (225)
Q Consensus 140 V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~ 170 (225)
-+|++...++|+-.+=.-++.|++.|++.+.
T Consensus 70 yDPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 70 YDPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred eCCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 5999999999999999999999999999865
No 101
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=93.51 E-value=0.76 Score=36.94 Aligned_cols=144 Identities=13% Similarity=0.092 Sum_probs=86.9
Q ss_pred eEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccC-----CeeEEEEec-CCcEEEEEecc
Q psy16071 12 DYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQD-----NLSVMAVNG-NGQVIGVALNG 85 (225)
Q Consensus 12 ~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~va~~~-~~~ivG~~~~~ 85 (225)
..|.......++++..++.++|..+-.... ......++++-++.. ..++.+.-. ..++||++.+.
T Consensus 82 c~idv~N~~ql~dv~~lL~eNYVED~~ag~---------rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~ 152 (451)
T COG5092 82 CVIDVANKKQLEDVFVLLEENYVEDIYAGH---------RFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAK 152 (451)
T ss_pred eeEeccccchhHHHHHHHHhhhhhhhhhhh---------HHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecc
Confidence 357777888899999999999864322211 123344555555432 244544432 26999998743
Q ss_pred cccCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcC
Q psy16071 86 IQHEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAG 165 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g 165 (225)
.-.. .+-+ ..-+++.+..|||+.+.|++-+.-.|++.+..+|...|
T Consensus 153 p~~v--------------------------------~vRg--K~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~ 198 (451)
T COG5092 153 PHLV--------------------------------SVRG--KRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDG 198 (451)
T ss_pred eeEE--------------------------------EEcc--cccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhh
Confidence 2111 0001 11236789999999999999999999999999998777
Q ss_pred CcE-EE---EEecCHHHH-HHHHH-cCCeEEEEEecccc
Q psy16071 166 FKV-FK---VDATGVFSQ-KISTK-LGLETLIELEYRNH 198 (225)
Q Consensus 166 ~~~-~~---~~~~n~~~~-~~y~k-~Gf~~~~~~~~~~~ 198 (225)
+-. ++ +...++.++ +.|-| +.++.+-.+.+..+
T Consensus 199 iw~avyTaG~~LpspVS~~RY~HRpLNwkkLy~~gFs~~ 237 (451)
T COG5092 199 IWRAVYTAGTELPSPVSQGRYYHRPLNWKKLYMCGFSGL 237 (451)
T ss_pred hHHHhhhccceecCccccchhccCCcCHHHHhhcCCcCC
Confidence 744 21 222333333 33322 45555554445444
No 102
>KOG4601|consensus
Probab=92.80 E-value=0.14 Score=38.99 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=41.5
Q ss_pred cEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHc-CC
Q psy16071 131 SIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKL-GL 187 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~-Gf 187 (225)
+.+.|-.++|++..||+|.|.+|+++.++.=.-.-.+ +.++-.+...++|.+|+ |-
T Consensus 107 e~lcILDFyVheS~QR~G~G~~lfdyMl~kE~vephQ-~a~DrPS~kLl~Fm~khYgl 163 (264)
T KOG4601|consen 107 EALCILDFYVHESEQRSGNGFKLFDYMLKKENVEPHQ-CAFDRPSAKLLQFMEKHYGL 163 (264)
T ss_pred CCceEEEEEeehhhhhcCchHHHHHHHHHhcCCCchh-eeccChHHHHHHHHHHhcCc
Confidence 4567888999999999999999999988654322222 45666667777887664 65
No 103
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=92.44 E-value=0.11 Score=41.11 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=29.0
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCc
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFK 167 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~ 167 (225)
+.=|.|.|-||++|+|+-|++.+=+.++..|..
T Consensus 158 LaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg~~ 190 (290)
T PLN03238 158 LACILTLPPYQRKGYGKFLISFAYELSKREGKV 190 (290)
T ss_pred EEEEEecChhhhccHhHhHHHHHhHHhhccCCC
Confidence 455779999999999999999999999887753
No 104
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=92.39 E-value=0.26 Score=38.95 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=36.7
Q ss_pred EEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHH-------Hhcc---CCeeEEEEecC-CcEEEE
Q psy16071 13 YVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSI-------LTLQ---DNLSVMAVNGN-GQVIGV 81 (225)
Q Consensus 13 ~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~va~~~~-~~ivG~ 81 (225)
.+|+++..|+++++++...+= - +.+.-|...+.+...+. .... .+..+|..|.+ |+++|+
T Consensus 3 vvRP~~~aDl~al~~LA~~sg---~------G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~ 73 (336)
T COG3138 3 VVRPVERADLEALMELAVKTG---V------GLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGI 73 (336)
T ss_pred ccccccccCHHHHHHHHHhcC---C------CcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeE
Confidence 589999999999999987641 1 12222223333333222 1111 23445556644 999999
Q ss_pred Eec
Q psy16071 82 ALN 84 (225)
Q Consensus 82 ~~~ 84 (225)
+..
T Consensus 74 saI 76 (336)
T COG3138 74 SAI 76 (336)
T ss_pred EEE
Confidence 764
No 105
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=92.28 E-value=0.23 Score=33.08 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.6
Q ss_pred cEEEEEEEEEcCCcccCCHHHHHHHHHHHH
Q psy16071 131 SIFECRILSVDNNYRGRGLANELFKLSIDI 160 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~ 160 (225)
...||..++|.|..||+|+|..|++.+.+.
T Consensus 33 ~~~yLdKfaV~~~~~g~gvad~vf~~i~~d 62 (99)
T cd04264 33 GVPYLDKFAVSSSAQGEGTSDALWRRLRRD 62 (99)
T ss_pred CceEEEEEEEchhhhhcChHHHHHHHHHhh
Confidence 357999999999999999999999977655
No 106
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=92.23 E-value=0.22 Score=33.15 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=26.6
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHH
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIA 161 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a 161 (225)
..+|..++|.|..||+|+|..|++.+.+..
T Consensus 34 ~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 34 VPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred ceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 579999999999999999999999877553
No 107
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=92.13 E-value=4.7 Score=31.54 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=29.9
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEE
Q psy16071 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFK 170 (225)
Q Consensus 138 l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~ 170 (225)
..-+|++..+++|+-.+-+-++.|++.|.+.++
T Consensus 173 ~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 173 TFYDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred EeeCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 446999999999999999999999999999865
No 108
>PLN03239 histone acetyltransferase; Provisional
Probab=91.39 E-value=0.14 Score=41.71 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=29.0
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCc
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFK 167 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~ 167 (225)
|.=|.|.|-||++|+|+.|++.+=+.++..|..
T Consensus 216 LaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg~~ 248 (351)
T PLN03239 216 LACILTFPAHQRKGYGRFLIAFSYELSKKEEKV 248 (351)
T ss_pred eEEEEecChhhhcchhhhhHhhhhHhhhhcCCC
Confidence 555779999999999999999999999877653
No 109
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=90.04 E-value=0.69 Score=30.83 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.9
Q ss_pred CcEEEEEEEEEcCCcccCCHHHHHH
Q psy16071 130 TSIFECRILSVDNNYRGRGLANELF 154 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg~Gig~~L~ 154 (225)
.+++.+..+||+|+||+......|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3789999999999999998887775
No 110
>KOG2036|consensus
Probab=89.99 E-value=0.3 Score=43.50 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=25.7
Q ss_pred EEEEEEEEcCCcccCCHHHHHHHHHHHHHH
Q psy16071 133 FECRILSVDNNYRGRGLANELFKLSIDIAS 162 (225)
Q Consensus 133 ~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~ 162 (225)
..+..++|+|+|+++|+|++-++-+.++..
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 357899999999999999999888777653
No 111
>PTZ00064 histone acetyltransferase; Provisional
Probab=89.34 E-value=0.25 Score=42.18 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=29.0
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCc
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFK 167 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~ 167 (225)
|.=|.|.|-||++|+|+.|++..-+.++..|..
T Consensus 387 LACILtLPpyQRKGYGklLIdfSYeLSrrEgk~ 419 (552)
T PTZ00064 387 LACILTLPCYQRKGYGKLLVDLSYKLSLKEGKW 419 (552)
T ss_pred eEEEEecchhhhcchhhhhhhhhhhhhhhcCCC
Confidence 555779999999999999999999999887753
No 112
>PRK14852 hypothetical protein; Provisional
Probab=88.46 E-value=1.3 Score=41.53 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=57.6
Q ss_pred CcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHc-CCeEEEEEecccccc
Q psy16071 130 TSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKL-GLETLIELEYRNHLD 200 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~-Gf~~~~~~~~~~~~~ 200 (225)
..++.+..++++|..|.+-+--.|++.+..++...|+..+. .+.|+.-..||+++ ||+.+++.......|
T Consensus 119 r~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~-i~VnPkH~~FY~r~l~f~~ig~~r~~p~Vn 189 (989)
T PRK14852 119 RNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDIL-VTVNPKHVKFYTDIFLFKPFGEVRHYDTVD 189 (989)
T ss_pred CeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEE-EEECcchHHHHHHHhCCccccccccCCCCC
Confidence 46788999999999998888888888888888888888755 45789999999985 999999876655543
No 113
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=87.68 E-value=7.2 Score=29.05 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=47.4
Q ss_pred CCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 128 DVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 128 ~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
....+..+..++.. +.|.+..|+..+.......|++- .+.|.+..-.+++.|+|....
T Consensus 83 ~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w-~vfTaT~~lr~~~~rlgl~~~ 140 (179)
T PF12261_consen 83 SRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEW-VVFTATRQLRNLFRRLGLPPT 140 (179)
T ss_pred chhheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCE-EEEeCCHHHHHHHHHcCCCce
Confidence 33567788888765 48999999999999999999995 556777888999999998654
No 114
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=86.32 E-value=2.5 Score=33.48 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEe
Q psy16071 147 RGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 147 ~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 194 (225)
.|-...|+..+.+.|++.|+..+++-+... +..+|++.||...+.++
T Consensus 20 ~~~~~~~~~~~~~~a~~~~~~ki~~~~~~~-~~~~~~~~g~~~e~~i~ 66 (266)
T TIGR03827 20 GNDVEALIPDLDALAKKEGYTKIIAKVPGS-DKPLFEERGYLEEAKIP 66 (266)
T ss_pred CccHHHHHHHHHHHHHHcCCcEEEEEccHH-HHHHHHHCCCeEEEecc
Confidence 345788999999999999999987765433 47899999999999887
No 115
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=86.30 E-value=0.28 Score=41.53 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=28.8
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCc
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFK 167 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~ 167 (225)
|.=|.|.|-||++|+|+.|++.+-+.++..|..
T Consensus 309 LaCIltlP~yQrkGyG~~LI~~SYeLSr~eg~~ 341 (450)
T PLN00104 309 LACILTLPPYQRKGYGKFLIAFSYELSKREGKV 341 (450)
T ss_pred eEEEEecchhhhcchhheehhheehhhhccCCC
Confidence 555779999999999999999999999877653
No 116
>PHA02769 hypothetical protein; Provisional
Probab=85.33 E-value=0.82 Score=30.92 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=31.6
Q ss_pred HHHHHHHHHH---HHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEeccc
Q psy16071 150 ANELFKLSID---IASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYRN 197 (225)
Q Consensus 150 g~~L~~~~~~---~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~ 197 (225)
|-.|++.+.. ..+..|+..+...-.-+-+..+|+|.||+.++..+-+.
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~kagfk~vg~tsrtk 144 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKKAGFKLVGQTSRTK 144 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhhhhhhHhccccccc
Confidence 4456666554 44677887654433345566899999999888765444
No 117
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=84.36 E-value=12 Score=27.61 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=34.9
Q ss_pred cEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHH-HHc-CCe
Q psy16071 131 SIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKIS-TKL-GLE 188 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y-~k~-Gf~ 188 (225)
.+.||..++|.|..||.|++-.+.+.+.+...++ ...+...| .+.++| +|. |+-
T Consensus 87 ~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~p~L---~Wrsr~~n-~~~~Wyf~rs~G~~ 142 (170)
T PF04768_consen 87 PVPYLDKFAVSKSAQGSGVADNVFNAIRKDFPKL---FWRSREDN-PNNKWYFERSDGSF 142 (170)
T ss_dssp SEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-SSE---EEEEETT--TTHHHHHHH-SEEE
T ss_pred CCeEEEEEEecchhhhcCHHHHHHHHHHHhccce---EEEecCCC-CcccEEEEeeEEEE
Confidence 4679999999999999999999999885443331 23333344 455665 443 653
No 118
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=84.12 E-value=4 Score=30.02 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=40.2
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcC
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLG 186 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~G 186 (225)
...+...+|+|+.+|.||+..| ..+.....++|.+..+.. .-.+..+.+++++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGt-VR~al~~Hv~R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGT-VRHALRNHVERLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeeccc-chHHHHHHHHHHh
Confidence 3578888999999999999976 677788899999975432 3355556677765
No 119
>KOG2747|consensus
Probab=83.95 E-value=0.56 Score=39.00 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=27.4
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCC
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGF 166 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~ 166 (225)
+.=|.|.|-||++|+|+.|++..=+..+..|.
T Consensus 263 laCILtLPpyQRkGYGklLIdFSYeLSr~E~~ 294 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDFSYELSRREGK 294 (396)
T ss_pred eeeeeecChhhhcccchhhhhhhhhhhcccCc
Confidence 44567999999999999999999999976654
No 120
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=81.98 E-value=26 Score=28.40 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=54.3
Q ss_pred cEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHc---------CCcE-EEEEe--cCHHHHHHHHHcCCeEEE-EEeccc
Q psy16071 131 SIFECRILSVDNNYRGRGLANELFKLSIDIASKA---------GFKV-FKVDA--TGVFSQKISTKLGLETLI-ELEYRN 197 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~---------g~~~-~~~~~--~n~~~~~~y~k~Gf~~~~-~~~~~~ 197 (225)
-++-+..+.|+.-|..-|+-..|++|++-++|+. |... +.+++ ......+..++.||..+. ...+++
T Consensus 198 ~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~YSFD~~~~k~L~~~gF~~i~ss~~ln~ 277 (304)
T PF11124_consen 198 FVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVYSFDKDMKKTLKKKGFKKISSSFKLNE 277 (304)
T ss_pred EEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEeeeccHHHHHHHHHCCCeeeecceecCC
Confidence 3678889999999999999999999998777652 2222 33444 467788999999999998 788888
Q ss_pred cc
Q psy16071 198 HL 199 (225)
Q Consensus 198 ~~ 199 (225)
+.
T Consensus 278 ~~ 279 (304)
T PF11124_consen 278 FS 279 (304)
T ss_pred cc
Confidence 73
No 121
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=81.82 E-value=3 Score=31.29 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=75.6
Q ss_pred EEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCC--eeEEEEecCCcEEEEEecccccCCC
Q psy16071 14 VYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDN--LSVMAVNGNGQVIGVALNGIQHEGD 91 (225)
Q Consensus 14 ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~va~~~~~~ivG~~~~~~~~~~~ 91 (225)
+|+++++|++++.+++.+.... +. +.+.- +.++..+++.. .++ .++|+.+.+|+|-.++-...-...
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl~~---f~----l~~~f-s~eev~Hw~lp--~~~Vv~syVve~~~~~ITDf~SFY~Lpst- 99 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYLKK---FD----LAPVF-SEEEVKHWFLP--RKNVVYSYVVEDPDGKITDFFSFYSLPST- 99 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHHTT---SS----EEEE---HHHHHHHHS---BTTTEEEEEEEETTSEEEEEEEEEEEEEE-
T ss_pred cccCchhhHHHHHHHHHHHHHh---cc----ccccc-CHHHHHhhccc--CCCeEEEEEEecCCCceeeEEEEeeccee-
Confidence 9999999999999999886521 11 11111 33455555433 344 467777766788888764322110
Q ss_pred hhHHHHHHhhhCChhHHHHHHHHHHhhhccccccc--cCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEE
Q psy16071 92 VDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSR--YDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVF 169 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~ 169 (225)
+.+. +..-...|+..- |...- =-+.|++-++-.|++.|+...
T Consensus 100 -------------------------------vi~~~k~~~l~aAY~fY~-~~~~~----~l~~Lm~DaLi~Ak~~gfDVF 143 (190)
T PF02799_consen 100 -------------------------------VIGNPKHKTLKAAYSFYY-VATST----RLKELMNDALILAKNEGFDVF 143 (190)
T ss_dssp -------------------------------ESSSSSSSEEEEEEEEEE-EESSS----HHHHHHHHHHHHHHHTTESEE
T ss_pred -------------------------------ecCCCCccceeeeeeeee-eecCC----CHHHHHHHHHHHHHHcCCCEE
Confidence 0000 010112233222 22221 245789999999999999975
Q ss_pred EEEecCHHHHHHHHHcCCe-EEEEEecccc
Q psy16071 170 KVDATGVFSQKISTKLGLE-TLIELEYRNH 198 (225)
Q Consensus 170 ~~~~~n~~~~~~y~k~Gf~-~~~~~~~~~~ 198 (225)
.+... --+..|.+.+.|. =-|.+.|.-|
T Consensus 144 NaLd~-mdN~~fL~~lKFg~GdG~L~YYLy 172 (190)
T PF02799_consen 144 NALDL-MDNSSFLEDLKFGPGDGNLNYYLY 172 (190)
T ss_dssp EEEST-TTGGGTTTTTT-EEEEEEEEEEEE
T ss_pred ehhhh-ccchhhHhhCCccCCCCCeEEEEE
Confidence 44332 1123678999996 4677777666
No 122
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=81.34 E-value=13 Score=27.35 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=35.8
Q ss_pred EEEcCCcccCCHHHHHHHH---------------------------HHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 138 LSVDNNYRGRGLANELFKL---------------------------SIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 138 l~V~p~~rg~Gig~~L~~~---------------------------~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
++++.+-||.|+..++-.+ +.+..+.+|++.+.+.++|+.-..-.+.+|-+++
T Consensus 85 VyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~ 164 (169)
T PF00925_consen 85 VYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVV 164 (169)
T ss_dssp EEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EE
T ss_pred EEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEE
Confidence 4457888888888555333 3355678899999988888988888899999999
Q ss_pred EEEec
Q psy16071 191 IELEY 195 (225)
Q Consensus 191 ~~~~~ 195 (225)
+.++.
T Consensus 165 ~~vp~ 169 (169)
T PF00925_consen 165 ERVPL 169 (169)
T ss_dssp EEE--
T ss_pred EEecC
Confidence 88763
No 123
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=80.42 E-value=3.7 Score=34.09 Aligned_cols=66 Identities=9% Similarity=0.183 Sum_probs=43.2
Q ss_pred cEEEEEEEEEcCCccc-CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHH-cCCeEEEEEecccc
Q psy16071 131 SIFECRILSVDNNYRG-RGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTK-LGLETLIELEYRNH 198 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg-~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k-~Gf~~~~~~~~~~~ 198 (225)
++-|++.++|.++.|| -||+..+++-..+..-..=+ .....+|+.+.=+|++ .|+-..+.-++.-|
T Consensus 399 ~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP~eL~--WRSR~~N~vNkwYf~rSvg~lk~~~~~wKlF 466 (495)
T COG5630 399 NVPYLDKFAVLDDAQGSEGISDAVFNIMREEFPNELF--WRSRHNNQVNKWYFARSVGYLKQKQDHWKLF 466 (495)
T ss_pred CCcceeeeeccccccccchHHHHHHHHHHHhCcHhhh--hhhcccCcchheeeehhhehhhccCCcceEE
Confidence 4568999999999999 99999999887776642211 2233355554433444 47755544555555
No 124
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=79.05 E-value=8.9 Score=27.13 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=26.5
Q ss_pred cHHHHHHHHHhccCCeeEEEEecCCcEEEEEecc
Q psy16071 52 HSELELHSILTLQDNLSVMAVNGNGQVIGVALNG 85 (225)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~va~~~~~~ivG~~~~~ 85 (225)
..++..++...+..|...+..|++|+.||++.+.
T Consensus 38 V~e~~~~iLPalk~~Qf~ly~de~g~Piaf~~WA 71 (148)
T COG2994 38 VAEISRNILPALKLGQFALYFDEHGRPIAFCTWA 71 (148)
T ss_pred HHHHHHHHhHHHhcCceEEEEcCCCCeeEEEEEe
Confidence 3455566677778898888888779999999864
No 125
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.55 E-value=13 Score=29.03 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=30.6
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE
Q psy16071 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV 171 (225)
Q Consensus 138 l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~ 171 (225)
..-+|++...++|+-.+-+-+..|++.|.+.+++
T Consensus 180 ~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYL 213 (253)
T COG2935 180 TFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYL 213 (253)
T ss_pred EEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEE
Confidence 3469999999999999999999999999998764
No 126
>KOG2696|consensus
Probab=77.19 E-value=3.7 Score=33.91 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=27.2
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHH-HHcCCcEEEEE
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIA-SKAGFKVFKVD 172 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a-~~~g~~~~~~~ 172 (225)
+..+-+.|-|||+|+|+.|++.+.... .+-..--++++
T Consensus 220 iSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v~DiTVE 258 (403)
T KOG2696|consen 220 ISQMLILPPFQGKGLGSQLYEAIARDYLEEPTVLDITVE 258 (403)
T ss_pred hheeEEeccccCCchHHHHHHHHHHhhccCCceeEEEec
Confidence 455778999999999999999988444 34333334444
No 127
>KOG2779|consensus
Probab=76.43 E-value=38 Score=28.15 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=75.3
Q ss_pred EEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCC--eeEEEEecCCcEEEEEecccccCCC
Q psy16071 14 VYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDN--LSVMAVNGNGQVIGVALNGIQHEGD 91 (225)
Q Consensus 14 ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~va~~~~~~ivG~~~~~~~~~~~ 91 (225)
+|++++.|++++..++.+... . + .+.+.- ..+++++++.. ..+ .++|+.+.+|+|-+++....-...-
T Consensus 263 ~R~me~kDvp~V~~Ll~~yl~-q--f----~la~~f-~~eev~Hwf~p--~e~VV~syVvesp~g~ITDF~SFy~lpsTv 332 (421)
T KOG2779|consen 263 LREMEEKDVPAVFRLLRNYLK-Q--F----ELAPVF-DEEEVEHWFLP--RENVVYSYVVESPNGKITDFCSFYSLPSTV 332 (421)
T ss_pred cccccccchHHHHHHHHHHHH-h--e----eccccc-CHHHhHhhccc--ccceEEEEEEECCCCcccceeeEEeccccc
Confidence 899999999999999987531 1 1 111111 23445444322 233 4788887778888887643221100
Q ss_pred hhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEE
Q psy16071 92 VDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKV 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~ 171 (225)
.. . ..+..-.+.|+. ..|+-+ -=-..|++-++-.|+..|+....+
T Consensus 333 ~~----------~--------------------~~~ktl~aaYly-Y~v~~~----t~~~~lvnDalilak~~gfDVFNA 377 (421)
T KOG2779|consen 333 MG----------N--------------------PKYKTLQAAYLY-YNVATS----TPLLQLVNDALILAKQKGFDVFNA 377 (421)
T ss_pred cC----------C--------------------CCcceeeeeeEE-EeccCC----ccHHHHHHHHHHHHHhcCCceeeh
Confidence 00 0 000000111221 112222 113568888888999999986432
Q ss_pred EecCHHHHHHHHHcCCeE-EEEEecccc
Q psy16071 172 DATGVFSQKISTKLGLET-LIELEYRNH 198 (225)
Q Consensus 172 ~~~n~~~~~~y~k~Gf~~-~~~~~~~~~ 198 (225)
. +---+..|.++++|-. -+.+.|.-|
T Consensus 378 l-d~meN~~fl~~LkFg~GdG~l~YYLY 404 (421)
T KOG2779|consen 378 L-DLMENESFLKDLKFGPGDGNLQYYLY 404 (421)
T ss_pred h-hhhhhhhHHHhcCcCcCCCceeEEEE
Confidence 2 2222346889999953 555666666
No 128
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=75.45 E-value=7.6 Score=32.53 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=46.5
Q ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEE
Q psy16071 137 ILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 137 ~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~ 193 (225)
.+.++|......+...|++.+.+.|++.|+..+.+.-.++.-....+..||......
T Consensus 105 R~l~~~~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~lF~~~~~~~~l~~~G~~~r~~~ 161 (370)
T PF04339_consen 105 RLLIAPGADRAALRAALLQALEQLAEENGLSSWHILFPDEEDAAALEEAGFLSRQGV 161 (370)
T ss_pred ceeECCCCCHHHHHHHHHHHHHHHHHHcCCCcceeecCCHHHHHHHHhCCCceecCC
Confidence 466788888899999999999999999999987666566666778888999765443
No 129
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=71.56 E-value=49 Score=29.29 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=30.0
Q ss_pred EEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEE
Q psy16071 133 FECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFK 170 (225)
Q Consensus 133 ~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~ 170 (225)
+.++.+=-+|+.= +|+.--|+..++.++|+.|++.+.
T Consensus 419 ~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fs 455 (538)
T COG2898 419 YSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFS 455 (538)
T ss_pred eEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEe
Confidence 4456666677665 899999999999999999998854
No 130
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=66.54 E-value=18 Score=28.12 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEE
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~ 192 (225)
|+-|+.++.+.|.+-|...+++.+.++.-...-+++|++.+-+
T Consensus 27 GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G~~avmT 69 (247)
T COG1212 27 GKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFGGEAVMT 69 (247)
T ss_pred CchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCEEEec
Confidence 5679999999998889998888888888888888898887654
No 131
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=63.67 E-value=90 Score=26.30 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCHHHHHHHH-HcCCeEEEEEeccccc
Q psy16071 152 ELFKLSIDIASKAGFKVFKVDATGVFSQKIST-KLGLETLIELEYRNHL 199 (225)
Q Consensus 152 ~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~-k~Gf~~~~~~~~~~~~ 199 (225)
.+....++.|.++|++.+ +..- +.=.+ ..||+.+.+-++--+.
T Consensus 293 ~cYYq~Ie~aI~~Gl~~f--~~Ga---qGEHK~~RGf~P~~t~S~H~~~ 336 (370)
T PF04339_consen 293 LCYYQGIEYAIEHGLRRF--EPGA---QGEHKIARGFEPVPTYSAHWIA 336 (370)
T ss_pred HHHHHHHHHHHHcCCCEE--ECCc---chhHHHHcCCccccceeeeeeC
Confidence 456789999999999963 3321 22122 2499888776655444
No 132
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=60.96 E-value=28 Score=25.25 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCcEEE-EEecC-----HHHHHHHHHcCCeEEEEE
Q psy16071 154 FKLSIDIASKAGFKVFK-VDATG-----VFSQKISTKLGLETLIEL 193 (225)
Q Consensus 154 ~~~~~~~a~~~g~~~~~-~~~~n-----~~~~~~y~k~Gf~~~~~~ 193 (225)
++..+++|++.|++.+- +.|-. ..-.++.+..||++....
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 68899999999999964 44422 333477889999987654
No 133
>PRK00756 acyltransferase NodA; Provisional
Probab=59.63 E-value=20 Score=26.24 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=31.1
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEE
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFK 170 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~ 170 (225)
...+...+|+|+..|.||+..+ ..+.-..+++|.+..+
T Consensus 85 VaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~F 122 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAF 122 (196)
T ss_pred EEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeec
Confidence 3567888899999999999876 6777778999998643
No 134
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=57.89 E-value=31 Score=27.03 Aligned_cols=46 Identities=11% Similarity=-0.056 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEEe-----cCHHHHHHHHHcCCeEEEEEeccc
Q psy16071 152 ELFKLSIDIASKAGFKVFKVDA-----TGVFSQKISTKLGLETLIELEYRN 197 (225)
Q Consensus 152 ~L~~~~~~~a~~~g~~~~~~~~-----~n~~~~~~y~k~Gf~~~~~~~~~~ 197 (225)
.-...+++.++.+|++++.+.+ .|.....+|+..||+++....++.
T Consensus 106 t~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 106 TPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 3455667777899999977655 467778999999999998776644
No 135
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.41 E-value=37 Score=26.05 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCcEEEEEe-----cCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 156 LSIDIASKAGFKVFKVDA-----TGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 156 ~~~~~a~~~g~~~~~~~~-----~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
.+++-.+..|++.+.+.+ .|+.-..|+++.||+++....++--
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~ 155 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGIT 155 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCc
Confidence 455667888888876543 6888889999999999987665443
No 136
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=57.11 E-value=30 Score=26.10 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=40.0
Q ss_pred EEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEeccccc
Q psy16071 139 SVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYRNHL 199 (225)
Q Consensus 139 ~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~ 199 (225)
.--+++|.-|+|.+++ +..|++.+.+.++|+.-+.-.+..|-+++..++...-.
T Consensus 121 g~~~D~R~ygigAqIL-------~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~~~ 174 (193)
T COG0807 121 GFPADERDYGIGAQIL-------KDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIVGA 174 (193)
T ss_pred cCCchHHHHHHHHHHH-------HHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCCCC
Confidence 3456777777777665 56799999988888876666788888888888765443
No 137
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=56.94 E-value=59 Score=22.01 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecC-----HHHHHHHHHcCCeEEEEEecccccccCCCccc
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDATG-----VFSQKISTKLGLETLIELEYRNHLDSATGLPM 207 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~~n-----~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~ 207 (225)
+....+.+.+.++++|++.+.+.... ..+++...+.|+++....+.+... ..|-++
T Consensus 45 a~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~D~T~ip--hnGcR~ 105 (110)
T PF00411_consen 45 AQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSITDVTPIP--HNGCRP 105 (110)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEEEETT----SSSS--
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEEeecCCC--CCCCCC
Confidence 34566778888899999887655432 577788888999887776666664 455443
No 138
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=55.61 E-value=19 Score=24.10 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.1
Q ss_pred CHHHHHHHHHcCCeEEE
Q psy16071 175 GVFSQKISTKLGLETLI 191 (225)
Q Consensus 175 n~~~~~~y~k~Gf~~~~ 191 (225)
-..+..||+++||+...
T Consensus 11 ~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 11 MAKSLDFYRRLGFDFPE 27 (122)
T ss_pred HHHHHHHHHHhCceecC
Confidence 48899999999998643
No 139
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=54.67 E-value=82 Score=28.03 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=31.5
Q ss_pred HHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 158 IDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 158 ~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
.+..+.+|++.+.+.+.|+.-+.-.+.+|.++++.+++.
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~ 381 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLL 381 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccc
Confidence 345577899998888888877777889999999998764
No 140
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=54.08 E-value=1.4e+02 Score=29.32 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=29.9
Q ss_pred EEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEE
Q psy16071 133 FECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFK 170 (225)
Q Consensus 133 ~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~ 170 (225)
+.++.+--+|+. =+|+.--|+-.+++.+++.|++.+.
T Consensus 446 ~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~s 482 (1094)
T PRK02983 446 LSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRIS 482 (1094)
T ss_pred EEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEE
Confidence 456655566774 5899999999999999999998754
No 141
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=54.05 E-value=1.1e+02 Score=24.17 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=44.2
Q ss_pred EEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEe---c--CHHHHHHHHHcCCeEEEEEeccccc
Q psy16071 133 FECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDA---T--GVFSQKISTKLGLETLIELEYRNHL 199 (225)
Q Consensus 133 ~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~---~--n~~~~~~y~k~Gf~~~~~~~~~~~~ 199 (225)
+-+..+.|+|.|++.. +.+.+.+.+.+.|++.+.+.. . ...-...-+..|.++.+.+||++-.
T Consensus 156 vD~vivVvDpS~~sl~----taeri~~L~~elg~k~i~~V~NKv~e~e~~~~~~~~~~~~~vlg~iP~d~~v 223 (255)
T COG3640 156 VDLVIVVVDPSYKSLR----TAERIKELAEELGIKRIFVVLNKVDEEEELLRELAEELGLEVLGVIPYDPEV 223 (255)
T ss_pred CCEEEEEeCCcHHHHH----HHHHHHHHHHHhCCceEEEEEeeccchhHHHHhhhhccCCeEEEEccCCHHH
Confidence 4456678999999654 455667888899988865432 1 2223344566899999999998854
No 142
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=52.63 E-value=19 Score=24.92 Aligned_cols=27 Identities=19% Similarity=-0.027 Sum_probs=18.6
Q ss_pred EEEEEec-CHHHHHHHHHcCCeEEEEEe
Q psy16071 168 VFKVDAT-GVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 168 ~~~~~~~-n~~~~~~y~k~Gf~~~~~~~ 194 (225)
.+.+.+. -+.+..||+++||+...+..
T Consensus 6 Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~ 33 (142)
T cd08353 6 NVGIVVRDLEAAIAFFLELGLELEGRAE 33 (142)
T ss_pred eEEEEeCCHHHHHHHHHHcCCEEccccc
Confidence 3333443 47889999999998765544
No 143
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=51.29 E-value=71 Score=23.49 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=35.3
Q ss_pred EEEEecC---HHH-HHHHHHcCCeEEEEEecccccccCCCcccC-------CCCCCCceEEEEEe
Q psy16071 169 FKVDATG---VFS-QKISTKLGLETLIELEYRNHLDSATGLPMF-------TPPSPHTSLKVMVK 222 (225)
Q Consensus 169 ~~~~~~n---~~~-~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~f-------~~~~~~~~~~~~~~ 222 (225)
+.+.++| ..+ ..++++-||+.+.+....+.. .+|++.| ..+.++|.+-+-.+
T Consensus 48 lflWvTn~~~~~~~~~l~~~WGf~~~~~~~WvK~~--~~g~~~~~~~~~g~~~r~~~E~lLig~r 110 (176)
T PF05063_consen 48 LFLWVTNSQLPEAKLELFPAWGFEYVTEWVWVKIT--KNGEPVFPDLGLGYYFRKPYEHLLIGRR 110 (176)
T ss_pred EEEEeccchhhHHHHHHHHhCCCEEEEEEEEEEec--CCCCccccccCCcccccCCcCeEEeeec
Confidence 4455555 444 778999999999988877775 5777777 25566666655443
No 144
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=51.14 E-value=74 Score=26.76 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=29.0
Q ss_pred HHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 158 IDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 158 ~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
.+..+.+|++.+.+.+ |+.-..-.+.+|.+++..+++.
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~~~ 365 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVPMP 365 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEecCC
Confidence 4556788999888776 8766666788899999887764
No 145
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=48.56 E-value=82 Score=26.06 Aligned_cols=67 Identities=9% Similarity=0.051 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHH-HHHH----HHcCCeEEEEEecccccccCCCcccCCCCCC
Q psy16071 147 RGLANELFKLSIDIASKAGFKVFKVDATGVFS-QKIS----TKLGLETLIELEYRNHLDSATGLPMFTPPSP 213 (225)
Q Consensus 147 ~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~-~~~y----~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~ 213 (225)
+=.+.+.++.++++|++.|+..+.+..+|... ..+| .+.|+--+.-.+-....-++.|..++..+.|
T Consensus 87 ~~~~~~am~~aiekAr~~Gi~~v~vrns~H~G~~g~y~~~aa~~G~igi~~tn~~~~vaP~Gg~~~~lGTNP 158 (332)
T PRK13260 87 NLTAKKMMDRAIELARDHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNP 158 (332)
T ss_pred HHHHHHHHHHHHHHHHHhCEEEEEEcCCCchhhHHHHHHHHHHCCCEEEEEeCCCCeeCCCCCCCCcccCCC
Confidence 33567888888999999999887776666433 2334 4458866544443333334566666544443
No 146
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=48.05 E-value=47 Score=23.11 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=18.2
Q ss_pred cCHHHHHHHHH-cCCeEEEEEeccc
Q psy16071 174 TGVFSQKISTK-LGLETLIELEYRN 197 (225)
Q Consensus 174 ~n~~~~~~y~k-~Gf~~~~~~~~~~ 197 (225)
.-..|++||++ +||+.+.+..+.+
T Consensus 12 DlerSi~FY~~vLG~~~~~~~~~~~ 36 (127)
T cd08358 12 NRNKTIKFYREVLGMKVLRHEEFEE 36 (127)
T ss_pred CHHHHHHHHHHhcCCEEEeeecCcc
Confidence 34899999965 8999887665543
No 147
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=47.84 E-value=43 Score=22.72 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=25.7
Q ss_pred cEEEEEEEEEcCCccc-CCHHHHHHHHHHH
Q psy16071 131 SIFECRILSVDNNYRG-RGLANELFKLSID 159 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg-~Gig~~L~~~~~~ 159 (225)
.+.||..++|.+..|| .|++-.+++.+.+
T Consensus 38 ~v~yLdKFav~~~~~gl~gv~D~vf~~m~~ 67 (108)
T cd04266 38 KIAYLDKFAVLPKAQGSDGIADILFNAMLD 67 (108)
T ss_pred CceEEEEEEEccccccccchHHHHHHHHHH
Confidence 4569999999999997 9999999997776
No 148
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=47.81 E-value=1.2e+02 Score=24.32 Aligned_cols=107 Identities=10% Similarity=0.053 Sum_probs=55.9
Q ss_pred eEEEec---CCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHh-ccCCeeEEEEecCCcEEEEEecccc
Q psy16071 12 DYVYPI---PEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILT-LQDNLSVMAVNGNGQVIGVALNGIQ 87 (225)
Q Consensus 12 ~~ir~~---~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~va~~~~~~ivG~~~~~~~ 87 (225)
+.+++. ++++.+++.++..+ |.... . .. ....+...+... ...-..+++.+.+|+|+|++++...
T Consensus 133 ~~~~~~~~~~~~~~~el~~i~~~-W~~~~------~---~~-e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~ 201 (299)
T PF09924_consen 133 FEVVPIPELDPELRDELLEISDE-WLKEK------E---RP-ERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPL 201 (299)
T ss_dssp -EEEE-----GGGHHHHHHHHHH-HHHHC------T---HH-HHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHH-HHhcC------c---hh-HHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEc
Confidence 556666 78889999998554 32111 0 00 011122222211 1133445666657999999986433
Q ss_pred cCCChhHHHHHHhhhCChhHHHHHHHHHHhhhccccccccCCCcEEEEEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCc
Q psy16071 88 HEGDVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFK 167 (225)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~ 167 (225)
.. ...+.++..--+|+ -=+|+-..|+...++.+++.|+.
T Consensus 202 ~~----------------------------------------~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~ 240 (299)
T PF09924_consen 202 GG----------------------------------------RDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVE 240 (299)
T ss_dssp E-----------------------------------------TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--
T ss_pred cC----------------------------------------CccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCce
Confidence 21 12344555555666 44799999999999999988998
Q ss_pred EEE
Q psy16071 168 VFK 170 (225)
Q Consensus 168 ~~~ 170 (225)
.+.
T Consensus 241 ~ln 243 (299)
T PF09924_consen 241 YLN 243 (299)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 149
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=47.67 E-value=42 Score=22.82 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcC
Q psy16071 153 LFKLSIDIASKAGFKVFKVDATGVFSQKISTKLG 186 (225)
Q Consensus 153 L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~G 186 (225)
+++++++.+++.|.+..++....+...+|++.+|
T Consensus 70 ~i~~l~~~a~~~g~~v~iis~~~e~G~~L~~~~g 103 (113)
T PF03465_consen 70 LIEELIELAEQSGAKVEIISSEHEEGEQLLKGFG 103 (113)
T ss_dssp HHHHHHHHHHHTTSEEEEE-TTSHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCccHHHHHhcCC
Confidence 7999999999999986555556677888888875
No 150
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=47.21 E-value=2.8 Score=34.28 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.6
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHc
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKA 164 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~ 164 (225)
+.=|-|.|-||++|+|..|++..-...+..
T Consensus 265 LaCILtLP~yQRrGYG~lLIdFSY~Ls~~E 294 (395)
T COG5027 265 LACILTLPPYQRRGYGKLLIDFSYLLSQKE 294 (395)
T ss_pred eEEEEecChhHhcccceEeeeeeeeccccc
Confidence 444668999999999999998877766543
No 151
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=46.77 E-value=65 Score=24.22 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=36.7
Q ss_pred cCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 141 DNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 141 ~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
.+++|--|+|.+++ +.+|++.+.+.++|+.-..-.+.+|-++++.+++.
T Consensus 121 ~~d~R~yGiGAQIL-------~dLGV~~~rLLtn~~~k~~~L~g~gleVv~~~~~~ 169 (191)
T TIGR00505 121 PADERDFSLCADIL-------EDLGVKKVRLLTNNPKKIEILKKAGINIVERVPLI 169 (191)
T ss_pred cccceehhHHHHHH-------HHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccc
Confidence 34577788887665 56799998888777766666778888998877653
No 152
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=46.28 E-value=51 Score=27.91 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=29.9
Q ss_pred HHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 159 DIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 159 ~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
+..+.+|++.+.+.+.|+.-+.-.+.+|.++++.+++.
T Consensus 321 qIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl~ 358 (387)
T PRK09318 321 QILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPLY 358 (387)
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccC
Confidence 34567788888888788876777889999999888764
No 153
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=46.26 E-value=67 Score=24.31 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=36.7
Q ss_pred cCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 141 DNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 141 ~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
.+++|--|+|.+++ +.+|++.+.+.++|+.-..-..-+|.++++.+++.
T Consensus 124 ~~d~R~yGiGAQIL-------~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~~~~ 172 (197)
T PRK00393 124 AADERDYTLAADML-------KALGVKKVRLLTNNPKKVEALTEAGINIVERVPLI 172 (197)
T ss_pred CccceehhHHHHHH-------HHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccc
Confidence 45678888887765 56799998887777755666678888998877653
No 154
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=46.06 E-value=49 Score=23.18 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=32.7
Q ss_pred CcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCe
Q psy16071 143 NYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLE 188 (225)
Q Consensus 143 ~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~ 188 (225)
+=||=|||+.+++.+.+...+ ... ++..-||..+-.-..|.|-.
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~-~~e-I~AlGTNa~AT~~MlKaGA~ 49 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE-EVE-IIALGTNAIATSAMLKAGAN 49 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC-CcE-EEEEehhHHHHHHHHHcCCC
Confidence 358999999999988877765 232 45566888888888888753
No 155
>PRK04531 acetylglutamate kinase; Provisional
Probab=45.63 E-value=1.9e+02 Score=24.63 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=26.1
Q ss_pred EEEEEEEEcCCcccCCHHHHHHHHHHHHHH
Q psy16071 133 FECRILSVDNNYRGRGLANELFKLSIDIAS 162 (225)
Q Consensus 133 ~~l~~l~V~p~~rg~Gig~~L~~~~~~~a~ 162 (225)
-||..++|.+..||.|++-.+++.+.+...
T Consensus 311 ~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~~ 340 (398)
T PRK04531 311 PYLDKFAVLDDARGEGLGRAVWNVMREETP 340 (398)
T ss_pred eEeEEEEEccchhhcChHHHHHHHHHhhCC
Confidence 589999999999999999999998776553
No 156
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=44.69 E-value=77 Score=20.49 Aligned_cols=22 Identities=14% Similarity=-0.147 Sum_probs=18.2
Q ss_pred EEEecCHHHHHHHHHcCCeEEE
Q psy16071 170 KVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 170 ~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
++...|..+++|.+.+|++-..
T Consensus 62 ~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 62 FVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred EEEeCCHHHHHHHHhcCcEEcc
Confidence 4677999999999999997543
No 157
>PRK08815 GTP cyclohydrolase; Provisional
Probab=44.65 E-value=1.6e+02 Score=24.84 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=29.1
Q ss_pred HHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 159 DIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 159 ~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
+..+.+|++.+.+.+.|+.-..-.+.+|.++++.+++.
T Consensus 306 QIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~~ 343 (375)
T PRK08815 306 AMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVT 343 (375)
T ss_pred HHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEeccC
Confidence 44577888888887777766666788899999888764
No 158
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=43.95 E-value=41 Score=22.17 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=19.6
Q ss_pred CcEEEEEecC-HHHHHHHHHcCCeEEEEE
Q psy16071 166 FKVFKVDATG-VFSQKISTKLGLETLIEL 193 (225)
Q Consensus 166 ~~~~~~~~~n-~~~~~~y~k~Gf~~~~~~ 193 (225)
+..+.+.+.+ ..+..||+.+||+...+-
T Consensus 3 i~hv~l~v~d~~~s~~FY~~lG~~~~~~~ 31 (112)
T cd08344 3 IDHFALEVPDLEVARRFYEAFGLDVREEG 31 (112)
T ss_pred eeEEEEecCCHHHHHHHHHHhCCcEEeec
Confidence 3444444544 788999999999886553
No 159
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.38 E-value=1.4e+02 Score=25.18 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=30.2
Q ss_pred HHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 157 SIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 157 ~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
+.+..+.+|+..+.+. +|+.-..-.+.+|.++++.+++.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~vp~~ 368 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPFP 368 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEecCC
Confidence 4566688999998877 77765666788899999888764
No 160
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=43.30 E-value=1.4e+02 Score=24.90 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHH-H----HHcCCeEEEEEecccccccCCCcccCCCCCC
Q psy16071 147 RGLANELFKLSIDIASKAGFKVFKVDATGVFSQKI-S----TKLGLETLIELEYRNHLDSATGLPMFTPPSP 213 (225)
Q Consensus 147 ~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~-y----~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~ 213 (225)
+=.+.+.|+.++++|++.|+..+.+..+|..+.-- | ...||-=+...+=....-++.|..++..+.|
T Consensus 90 ~~a~~~am~~aie~Ak~~Gia~vav~ns~H~g~~g~y~~~aA~~GlIgi~~tns~a~VaP~GG~e~~lGTNP 161 (349)
T COG2055 90 QVAAKKAMELAIEKAKQHGIAAVAVRNSNHFGALGYYAEQAAEAGLIGIAMTNSDAVVAPFGGREPRLGTNP 161 (349)
T ss_pred hHHHHHHHHHHHHHHHHhCeeEEEEecCCccchHHHHHHHHHHCCCeEEEEeCCCceecCCCCccccccCCC
Confidence 44677889999999999999987776666544422 2 3457754433332233334666666544443
No 161
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=42.68 E-value=31 Score=24.50 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEE
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~ 192 (225)
|+.|++++++.+++.|+..+++.+.++.-...+.+.|.+.+..
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~~~~~~~~~~~~~~~v~~ 65 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGEEEIYEYLERYGIKVVVD 65 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEESTHHHHHHHTTTTSEEEE-
T ss_pred CccHHHHHHHHhhccCCceEEEecChHHHHHHHhccCceEEEe
Confidence 4569999999999999888887776654444556677776654
No 162
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=42.51 E-value=92 Score=26.00 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHH-HHH----HHcCCeEEEEEecccccccCCCcccCCCCCC
Q psy16071 147 RGLANELFKLSIDIASKAGFKVFKVDATGVFSQ-KIS----TKLGLETLIELEYRNHLDSATGLPMFTPPSP 213 (225)
Q Consensus 147 ~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~-~~y----~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~ 213 (225)
+=.+.+.++.++++|++.|+..+.+..+|.... .+| .+.|+--+...+-....-++.|..++..+.|
T Consensus 87 ~~a~~~Am~~aiekAr~~Gi~~v~v~ns~H~G~~g~Y~~~aa~~G~Igi~~tNs~~~vaP~GG~~~~lGTNP 158 (349)
T TIGR03175 87 QVAAKMAMEHAIEIAKKSGVAVVGISRMSHSGALSYFVRQAAEQGMVALSMCQSDPMVVPFGGTDIYFGTNP 158 (349)
T ss_pred HHHHHHHHHHHHHHHHHhCEEEEEecCCCccccHHHHHHHHHHCCCEEEEEeCCCCeeCCCCCCCCCcCCCC
Confidence 345778889999999999998777665654332 334 4458865544443333333566666544433
No 163
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=41.90 E-value=1.1e+02 Score=20.68 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=40.1
Q ss_pred ccCCHHH-HHHHHHHHHHHHcCCcEEEEEe-----cCHHHHHHHHHcCCeEEEEEecccccccCCCc
Q psy16071 145 RGRGLAN-ELFKLSIDIASKAGFKVFKVDA-----TGVFSQKISTKLGLETLIELEYRNHLDSATGL 205 (225)
Q Consensus 145 rg~Gig~-~L~~~~~~~a~~~g~~~~~~~~-----~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~ 205 (225)
++.-++. ...+.+.+.++++|++.+.+.. .-..+++...+.|+++....+.+... .+|-
T Consensus 39 k~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~ip--hNGc 103 (108)
T TIGR03632 39 KSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIP--HNGC 103 (108)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCC--CCCc
Confidence 3344444 4555677888999999876554 23677788888999887766666554 4553
No 164
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.86 E-value=1.8e+02 Score=24.91 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=29.6
Q ss_pred HHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 158 IDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 158 ~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
.+..+.+|++.+.+.+.|+.=+.-.+.+|.+++..+++.
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~~~ 377 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPLP 377 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEeccC
Confidence 345577888888877777765666788999999888764
No 165
>PRK07198 hypothetical protein; Validated
Probab=41.55 E-value=58 Score=27.56 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=39.1
Q ss_pred CCcccCCHHHHHHHHHHHHHHHcCCcEE-EEEecCHHHHHHHHHcCCeEEEEEeccccc
Q psy16071 142 NNYRGRGLANELFKLSIDIASKAGFKVF-KVDATGVFSQKISTKLGLETLIELEYRNHL 199 (225)
Q Consensus 142 p~~rg~Gig~~L~~~~~~~a~~~g~~~~-~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~ 199 (225)
+++|-.|+|.+++. .+|+..+ .+.+.|+.-..-.+.+|-++++.+++....
T Consensus 329 ~D~RdyGlGAQILr-------dLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl~~~~ 380 (418)
T PRK07198 329 QDMRFQELMPDVLH-------WLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPIPDEL 380 (418)
T ss_pred CcceehhHHHHHHH-------HhCCChhhhhcCCCHHHHHHHHhCCCEEEEEeccCcCC
Confidence 47888888887664 5699988 777777766666788999999998875543
No 166
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=41.38 E-value=26 Score=23.35 Aligned_cols=18 Identities=28% Similarity=0.205 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCeEEEEE
Q psy16071 176 VFSQKISTKLGLETLIEL 193 (225)
Q Consensus 176 ~~~~~~y~k~Gf~~~~~~ 193 (225)
..+.+||+.+||+....-
T Consensus 13 ~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 13 AESKQFYQALGFELEWEN 30 (113)
T ss_pred HHHHHHHHHhCCeeEecC
Confidence 788999999999987653
No 167
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=40.79 E-value=1.9e+02 Score=25.17 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=30.5
Q ss_pred HHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 158 IDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 158 ~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
.+..+.+|++.+.+.+.|+.=+.-.+.+|.+++..++..
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp~~ 411 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVPLL 411 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEeccc
Confidence 345577899988888778866777889999999888754
No 168
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=39.06 E-value=1.7e+02 Score=22.16 Aligned_cols=59 Identities=7% Similarity=0.124 Sum_probs=40.6
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEe-cCHHHHHHHHHcC----CeEEEEEecccccccCCCccc
Q psy16071 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDA-TGVFSQKISTKLG----LETLIELEYRNHLDSATGLPM 207 (225)
Q Consensus 138 l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~-~n~~~~~~y~k~G----f~~~~~~~~~~~~~~~~g~~~ 207 (225)
+.++|.++ ...+++++++++.+++.. .++.-.++++.++ -..+..++-+.+.+ .+|+..
T Consensus 72 i~Idp~fK----------ef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih-~dg~h~ 135 (220)
T COG4359 72 IKIDPGFK----------EFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIH-IDGQHS 135 (220)
T ss_pred cccCccHH----------HHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEc-CCCcee
Confidence 56788764 788999999999866544 5788889999986 33444445555554 455443
No 169
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=39.02 E-value=1.3e+02 Score=20.67 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecC-------------HHHHHHHHHcCCeEEEEEecccc
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDATG-------------VFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~~n-------------~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
+....+.+.+.|+++|++.+.+.... +.+++-.++.|+++....+.+..
T Consensus 48 Aq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpi 109 (114)
T TIGR03628 48 AMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPI 109 (114)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 34556778899999999986654422 67788899999988766555443
No 170
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=38.12 E-value=2.4e+02 Score=23.58 Aligned_cols=54 Identities=7% Similarity=-0.029 Sum_probs=42.9
Q ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 137 ILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 137 ~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
.+..-|.|.=-.+|...-.-+....++.|++.+......+.+..+|++.-|-+.
T Consensus 83 ~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~~ENpgv~~yk~~~~Ivk 136 (349)
T PF07355_consen 83 VVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMYEENPGVEMYKKDVYIVK 136 (349)
T ss_pred EEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEecccChhHHHHhhccEEEE
Confidence 355789999999999999999889999999987765543346899999866443
No 171
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=37.64 E-value=1.4e+02 Score=21.54 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=36.9
Q ss_pred cCCcccCCHHH-HHHHHHHHHHHHcCCcEEEEEecC-H-----------------HHHHHHHHcCCeEEEEEeccc
Q psy16071 141 DNNYRGRGLAN-ELFKLSIDIASKAGFKVFKVDATG-V-----------------FSQKISTKLGLETLIELEYRN 197 (225)
Q Consensus 141 ~p~~rg~Gig~-~L~~~~~~~a~~~g~~~~~~~~~n-~-----------------~~~~~y~k~Gf~~~~~~~~~~ 197 (225)
-=.|=|-.+|. +|++.+.+.|++.|+..+.+...+ + -=.++.+++|+..+-.++++.
T Consensus 11 iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~~ 86 (157)
T PF06574_consen 11 IGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFTE 86 (157)
T ss_dssp ES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CCC
T ss_pred EeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecchH
Confidence 34566777775 699999999999998875443322 1 113678999999998888874
No 172
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=37.63 E-value=54 Score=21.64 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCeEEEE
Q psy16071 176 VFSQKISTKLGLETLIE 192 (225)
Q Consensus 176 ~~~~~~y~k~Gf~~~~~ 192 (225)
..+..||+.+||+....
T Consensus 15 ~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 15 DKAERFLTDFGLEVAAR 31 (113)
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 78899999999987654
No 173
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=37.25 E-value=1.2e+02 Score=24.99 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEe-cCHH-HHHHH----HHcCCeEEEEEecccccccCCCcccCCCCCC
Q psy16071 147 RGLANELFKLSIDIASKAGFKVFKVDA-TGVF-SQKIS----TKLGLETLIELEYRNHLDSATGLPMFTPPSP 213 (225)
Q Consensus 147 ~Gig~~L~~~~~~~a~~~g~~~~~~~~-~n~~-~~~~y----~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~ 213 (225)
+=.+...++.++++|++.|+..+.+.. +|.. ...+| .+.|+--+...+-....-++.|..++..+.|
T Consensus 76 ~~~~~~am~~aiekAr~~Gi~~v~vrn~S~H~G~~g~y~~~aa~~Gligi~~tN~~~~vaP~GG~~~~lGTNP 148 (330)
T PLN00105 76 MLVLHHAMDMAIDKAKTHGVGIVGTCNTSTSTGALGYYAEKVAQQGLIGLVFANSPEFVAPAGGIEPIFGTNP 148 (330)
T ss_pred HHHHHHHHHHHHHHHHHhCEEEEEEeCCcCCccchHHHHHHHHHCCCeEEEEeCCCCeeCCCCCCCCcccCCC
Confidence 345678888999999999998877665 5532 22334 4458865554443333334666666544443
No 174
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=35.40 E-value=18 Score=21.84 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=11.8
Q ss_pred EcCCcccCCHHHHH
Q psy16071 140 VDNNYRGRGLANEL 153 (225)
Q Consensus 140 V~p~~rg~Gig~~L 153 (225)
=+|+||.+.|++.|
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 47999999999865
No 175
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=35.17 E-value=40 Score=22.52 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=16.0
Q ss_pred CHHHHHHHHHcCCeEEEEEe
Q psy16071 175 GVFSQKISTKLGLETLIELE 194 (225)
Q Consensus 175 n~~~~~~y~k~Gf~~~~~~~ 194 (225)
-..+..||+++||+.....+
T Consensus 13 l~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 13 LDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHHcCCEEEecCC
Confidence 38899999989998876543
No 176
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=34.82 E-value=32 Score=20.70 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=21.6
Q ss_pred ccccccceEEEecCCCCHHHHHHHHHh
Q psy16071 5 KMSKEEIDYVYPIPEDKYNDVIEHLRY 31 (225)
Q Consensus 5 ~~~~~~~~~ir~~~~~D~~~i~~ll~~ 31 (225)
.++...++.++-+.+++++++.+.+.+
T Consensus 42 rlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 42 RLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred EECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 456677888999999999998887764
No 177
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=34.60 E-value=84 Score=20.69 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=19.1
Q ss_pred cEEEEEecC-HHHHHHHHH-cCCeEEEEEe
Q psy16071 167 KVFKVDATG-VFSQKISTK-LGLETLIELE 194 (225)
Q Consensus 167 ~~~~~~~~n-~~~~~~y~k-~Gf~~~~~~~ 194 (225)
..+.+.+.| ..+..||++ +||+...+..
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~ 32 (126)
T cd08346 3 HHVTLITRDAQETVDFYTDVLGLRLVKKTV 32 (126)
T ss_pred ccEEEEcCChhHhHHHHHHccCCEEeeeEe
Confidence 334444444 788899987 6999876654
No 178
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=32.94 E-value=67 Score=22.56 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=29.4
Q ss_pred ccCCHHHHHHHHHHHHHHHcCCcEEE-EEecCHHHHHHHHHc-CCeE
Q psy16071 145 RGRGLANELFKLSIDIASKAGFKVFK-VDATGVFSQKISTKL-GLET 189 (225)
Q Consensus 145 rg~Gig~~L~~~~~~~a~~~g~~~~~-~~~~n~~~~~~y~k~-Gf~~ 189 (225)
+..|+++-|+...++.|++.|++.+. ...+ ....+|+++ .+..
T Consensus 37 ~hp~L~~Dllge~v~a~h~~Girv~ay~~~~--~d~~~~~~HPeW~~ 81 (132)
T PF14871_consen 37 RHPGLKRDLLGEQVEACHERGIRVPAYFDFS--WDEDAAERHPEWFV 81 (132)
T ss_pred CCCCCCcCHHHHHHHHHHHCCCEEEEEEeee--cChHHHHhCCceee
Confidence 34455589999999999999999743 3322 455667665 4433
No 179
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=32.81 E-value=2.2e+02 Score=21.56 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=42.3
Q ss_pred EEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecccccc
Q psy16071 136 RILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYRNHLD 200 (225)
Q Consensus 136 ~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~ 200 (225)
..++++-..|.+- .-+...+...++.+ ..+..+|++----..-.++||..+++- +..|.+
T Consensus 66 dIIAlDaT~R~Rp---~~l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D~I~TT-LsGYT~ 125 (192)
T PF04131_consen 66 DIIALDATDRPRP---ETLEELIREIKEKY-QLVMADISTLEEAINAAELGFDIIGTT-LSGYTP 125 (192)
T ss_dssp SEEEEE-SSSS-S---S-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-SEEE-T-TTTSST
T ss_pred CEEEEecCCCCCC---cCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCCEEEcc-cccCCC
Confidence 4688888888888 66777888888877 556789988777788899999999875 556653
No 180
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=32.43 E-value=1.1e+02 Score=20.34 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=25.2
Q ss_pred EEEEEEEEEcCCcccCCHHHHHHHHHHHH
Q psy16071 132 IFECRILSVDNNYRGRGLANELFKLSIDI 160 (225)
Q Consensus 132 ~~~l~~l~V~p~~rg~Gig~~L~~~~~~~ 160 (225)
+-+|..++|.+.-++.|++-.+.+.+.+.
T Consensus 33 v~~LdkFav~~~~~~~gv~D~vf~~i~~d 61 (98)
T cd03173 33 IPYLDKFAVSDHLWLNNVTDNIFNLIRKD 61 (98)
T ss_pred CEEEEEEEEcccccccCHHHHHHHHHHhh
Confidence 45899999999999999999999876654
No 181
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=32.42 E-value=1.8e+02 Score=20.51 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEec-------------CHHHHHHHHHcCCeEEEEEecccccccCCCcc
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDAT-------------GVFSQKISTKLGLETLIELEYRNHLDSATGLP 206 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~~-------------n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~ 206 (225)
+....+.+.+.|+++|++.+.+... -+.+++-.++.|+++....+.+..- .+|=+
T Consensus 55 Aq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiP--hNGCR 122 (132)
T PRK09607 55 AMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIP--HDGTR 122 (132)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCC--CCCCC
Confidence 4456667889999999998655432 2568888999999988777666664 45533
No 182
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=32.07 E-value=1.5e+02 Score=22.27 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=34.7
Q ss_pred cCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEEecc
Q psy16071 141 DNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 141 ~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
.+++|--|+|.+++ +.+|++.+.+.++|+.-..-..-+|-++++.+++.
T Consensus 123 ~~d~R~yGiGAQIL-------~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~~~~ 171 (193)
T cd00641 123 PADARDYGLAAQIL-------RDLGIKSVRLLTNNPDKIDALEGYGIEVVERVPLE 171 (193)
T ss_pred CccccchHHHHHHH-------HHcCCCeEEECCCCHHHHHHHHhCCCEEEEEeccC
Confidence 34577777777655 56799998887777755555667777888777653
No 183
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.74 E-value=41 Score=22.61 Aligned_cols=17 Identities=29% Similarity=0.038 Sum_probs=14.4
Q ss_pred CHHHHHHHHHcCCeEEE
Q psy16071 175 GVFSQKISTKLGLETLI 191 (225)
Q Consensus 175 n~~~~~~y~k~Gf~~~~ 191 (225)
=..+..||+.+||+...
T Consensus 11 l~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 11 LEKSTAFYTALGFEFNP 27 (124)
T ss_pred HHHHHHHHHHCCCEEcc
Confidence 38899999999998764
No 184
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=31.64 E-value=1.8e+02 Score=24.32 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHH-HHH----HHcCCeEEEEEecccccccCCCcccCCCCCC
Q psy16071 147 RGLANELFKLSIDIASKAGFKVFKVDATGVFSQ-KIS----TKLGLETLIELEYRNHLDSATGLPMFTPPSP 213 (225)
Q Consensus 147 ~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~-~~y----~k~Gf~~~~~~~~~~~~~~~~g~~~f~~~~~ 213 (225)
+=.+...++.++++|++.|+..+.+-.+|.... .+| .+.|+--+.-.+-....-++.|..++..+.|
T Consensus 87 ~~a~~~Am~~aiekA~~~Gi~~v~vrnS~H~G~~g~y~~~aa~~Gligi~~tns~~~vaP~Gg~~~~lGTNP 158 (349)
T PRK15025 87 QVAAKMGMEHAIETAKQNGVAVVGISRMGHSGAISYFVQQAARAGLIGLSMCQSDPMVVPFGGAEIYYGTNP 158 (349)
T ss_pred HHHHHHHHHHHHHHHHHhCEEEEEEeCCCccccHHHHHHHHHHCCCEEEEEeCCCCeeCCCCCCCCCcCCCC
Confidence 335678889999999999998777665654332 333 4458765544333233323555555544333
No 185
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=31.57 E-value=1.1e+02 Score=23.80 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
|+-|+.++++.+...++..+++.+..+.-....++.|++.+
T Consensus 23 GkPli~~~le~~~~~~~d~VvVvt~~~~i~~~~~~~g~~~v 63 (238)
T TIGR00466 23 GKPMIVHVAENANESGADRCIVATDDESVAQTCQKFGIEVC 63 (238)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHcCCEEE
Confidence 57788888888877677776665554444455677787654
No 186
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=31.47 E-value=1.9e+02 Score=20.36 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEEec-----CHHHHHHHHHcCCeEEEEEecccccccCCCcccCC
Q psy16071 152 ELFKLSIDIASKAGFKVFKVDAT-----GVFSQKISTKLGLETLIELEYRNHLDSATGLPMFT 209 (225)
Q Consensus 152 ~L~~~~~~~a~~~g~~~~~~~~~-----n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~f~ 209 (225)
...+.+.+.+.+.|++.+-+... -+++++-....|+++....+.+... -+|-+++.
T Consensus 65 ~aa~~aa~~a~e~Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~DvTPip--hnG~Rppk 125 (129)
T COG0100 65 LAAEDAAKKAKEHGIKSVEVKVKGPGPGREAAIRALAAAGLKITRIEDVTPIP--HNGCRPPK 125 (129)
T ss_pred HHHHHHHHHHHHhCccEEEEEEECCCCcHHHHHHHHHHccceEEEEEEcCCCC--CCCCCCCC
Confidence 44555677788999998655442 2788888999999999888887775 57766664
No 187
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=31.40 E-value=2.7e+02 Score=22.26 Aligned_cols=68 Identities=16% Similarity=0.326 Sum_probs=42.8
Q ss_pred cEEEEEEEEEcCCcccCC--HHHHHHHHHHHHHHHcCCcEEEEEe--cCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 131 SIFECRILSVDNNYRGRG--LANELFKLSIDIASKAGFKVFKVDA--TGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 131 ~~~~l~~l~V~p~~rg~G--ig~~L~~~~~~~a~~~g~~~~~~~~--~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
+-++|..++-++.+-+.| +-...+..=+..+|+.|+..+.+.. .++.-..+.-++|+-+..+++...+
T Consensus 13 k~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~ 84 (298)
T PF02836_consen 13 KPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGH 84 (298)
T ss_dssp EEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSC
T ss_pred EEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEecccccc
Confidence 446788888888775554 4567777778889999999887632 2455566778899999999887443
No 188
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=31.35 E-value=74 Score=22.37 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=21.3
Q ss_pred HcCCcEEEEEecC-HHHHHHHHH-cCCeEEEEEe
Q psy16071 163 KAGFKVFKVDATG-VFSQKISTK-LGLETLIELE 194 (225)
Q Consensus 163 ~~g~~~~~~~~~n-~~~~~~y~k-~Gf~~~~~~~ 194 (225)
..++..+.+.+++ +.+..||+. +||+...+..
T Consensus 15 ~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~ 48 (150)
T TIGR00068 15 KRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRD 48 (150)
T ss_pred CceEEEEEEEecCHHHHHHHHHHhcCCEEEEEec
Confidence 3444445555554 888999976 7998866543
No 189
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=31.13 E-value=95 Score=20.19 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=18.6
Q ss_pred EEEEEecC-HHHHHHHHH-cCCeEEEEE
Q psy16071 168 VFKVDATG-VFSQKISTK-LGLETLIEL 193 (225)
Q Consensus 168 ~~~~~~~n-~~~~~~y~k-~Gf~~~~~~ 193 (225)
.+.+.+.+ +.+.+||++ +||+.....
T Consensus 5 hv~l~v~d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 5 YAELEVPDLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred EEEEecCCHHHHHHHHHhccCcEEEeec
Confidence 34444444 788999999 799987654
No 190
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=30.40 E-value=1.1e+02 Score=20.08 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=20.1
Q ss_pred EEEEEecC-HHHHHHHHH-cCCeEEEEEe
Q psy16071 168 VFKVDATG-VFSQKISTK-LGLETLIELE 194 (225)
Q Consensus 168 ~~~~~~~n-~~~~~~y~k-~Gf~~~~~~~ 194 (225)
.+.+.+.+ +.+..||++ +||+.+....
T Consensus 4 Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 4 HIAIRVKDLEKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEESCHHHHHHHHHHTTTSEEEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhCCcEEeeec
Confidence 34444443 788999988 6999988877
No 191
>PRK10098 putative dehydrogenase; Provisional
Probab=30.36 E-value=1.9e+02 Score=24.13 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHHcCCcEEEEEecCHHHH-HHH----HHcCCeEEEEEecc--cccccCCCcccCCCC
Q psy16071 148 GLANELFKLSIDIASKAGFKVFKVDATGVFSQ-KIS----TKLGLETLIELEYR--NHLDSATGLPMFTPP 211 (225)
Q Consensus 148 Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~-~~y----~k~Gf~~~~~~~~~--~~~~~~~g~~~f~~~ 211 (225)
=.+.+.++.++++|++.|+..+.+..+|.... .+| .+.|+--+.-.+-. ...-++.|..++..+
T Consensus 92 ~a~~~Am~~aie~Ar~~Gi~~v~vrnS~H~G~~g~y~~~aa~~G~igi~~tN~~s~~~vaP~Gg~~~~lGT 162 (350)
T PRK10098 92 VVAHEAMALGIERARQHGICAVALRNSHHIGRIGHWAEQCAAAGLVSIHFVNVVGDPMVAPFHGRDSRFGT 162 (350)
T ss_pred HHHHHHHHHHHHHHHHhCEEEEEEecCCCccchHHHHHHHHHCCCEEEEEecCCCCceecCCCCCCCcccC
Confidence 35678888899999999998777666654332 334 44587655443321 222235555554433
No 192
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.20 E-value=93 Score=20.39 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=20.0
Q ss_pred CCcEEEEEecC-HHHHHHHHH-cCCeEEEEE
Q psy16071 165 GFKVFKVDATG-VFSQKISTK-LGLETLIEL 193 (225)
Q Consensus 165 g~~~~~~~~~n-~~~~~~y~k-~Gf~~~~~~ 193 (225)
++..+.+.+.+ ..+..||++ +||+.....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 34445555554 788899988 799876554
No 193
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=30.08 E-value=1.5e+02 Score=18.70 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 149 LANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 149 ig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
-|-.++..+.+.+++.|... .+...++...+++++.|+...
T Consensus 54 ~g~~~L~~l~~~~~~~g~~v-~i~~~~~~~~~~l~~~gl~~~ 94 (99)
T cd07043 54 SGLGVLLGAYKRARAAGGRL-VLVNVSPAVRRVLELTGLDRL 94 (99)
T ss_pred hhHHHHHHHHHHHHHcCCeE-EEEcCCHHHHHHHHHhCccee
Confidence 34567777888888888774 444457788899999998644
No 194
>PHA01733 hypothetical protein
Probab=29.94 E-value=33 Score=24.78 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH-HcCCcEE--EEEecCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 152 ELFKLSIDIAS-KAGFKVF--KVDATGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 152 ~L~~~~~~~a~-~~g~~~~--~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
.++.++..... ...++.+ +++..|..+.+|.+.+||+.....+|...
T Consensus 89 ~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~~~g~~ 138 (153)
T PHA01733 89 ALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRYVQPGPL 138 (153)
T ss_pred HHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeecccccCcC
Confidence 34444433333 3445543 36778999999999999999998888665
No 195
>PRK05309 30S ribosomal protein S11; Validated
Probab=29.94 E-value=2e+02 Score=20.15 Aligned_cols=56 Identities=16% Similarity=0.025 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEec-----CHHHHHHHHHcCCeEEEEEecccccccCCCccc
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDAT-----GVFSQKISTKLGLETLIELEYRNHLDSATGLPM 207 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~~-----n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~ 207 (225)
+....+.+.+.+.++|++.+.+... -..+++...+.|.++....+.+... .+|-++
T Consensus 62 a~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~Tpip--hNGcR~ 122 (128)
T PRK05309 62 AQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIP--HNGCRP 122 (128)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCC--CCCcCc
Confidence 3455666778889999998765542 3677788888899887766666664 566444
No 196
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=29.73 E-value=1.2e+02 Score=22.14 Aligned_cols=32 Identities=19% Similarity=0.535 Sum_probs=26.7
Q ss_pred EcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE
Q psy16071 140 VDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172 (225)
Q Consensus 140 V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~ 172 (225)
.+|+|.|.- +..|++.+.+..++.|+...-++
T Consensus 63 td~~~k~~~-S~~lL~~~~~~~~~~g~~i~niD 94 (155)
T TIGR00151 63 TDPRWKGAD-SRVLLRHAVALIKEKGYRIGNVD 94 (155)
T ss_pred CChhhCCCC-HHHHHHHHHHHHHHcCCEEEEEE
Confidence 578888877 88999999999999999874443
No 197
>PHA00432 internal virion protein A
Probab=29.51 E-value=1.5e+02 Score=21.05 Aligned_cols=23 Identities=13% Similarity=-0.088 Sum_probs=20.7
Q ss_pred EEEecCHHHHHHHHHcCCeEEEE
Q psy16071 170 KVDATGVFSQKISTKLGLETLIE 192 (225)
Q Consensus 170 ~~~~~n~~~~~~y~k~Gf~~~~~ 192 (225)
++...|..+.+|.+.+||+...+
T Consensus 99 yV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 99 YVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred eeecCCHHHHHHHHHcCeeeecc
Confidence 47779999999999999998887
No 198
>KOG3014|consensus
Probab=29.35 E-value=87 Score=24.66 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=27.2
Q ss_pred CcEEEEEEEEEcCCcccCCHHHHHHHHHHHHH
Q psy16071 130 TSIFECRILSVDNNYRGRGLANELFKLSIDIA 161 (225)
Q Consensus 130 ~~~~~l~~l~V~p~~rg~Gig~~L~~~~~~~a 161 (225)
+-.+-+..+=|.+.-|++||++.|+..+....
T Consensus 181 ~~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~ 212 (257)
T KOG3014|consen 181 PAICGISRIWVSSLRRRKGIASLLLDVARCNF 212 (257)
T ss_pred CcEeeeEEEEeehhhhhhhhHHHHHHHHHHhh
Confidence 45677888999999999999999999877554
No 199
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=29.30 E-value=1.1e+02 Score=23.34 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHc-CCcEEEEEecCHHHHHHHHHcCCeE
Q psy16071 150 ANELFKLSIDIASKA-GFKVFKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 150 g~~L~~~~~~~a~~~-g~~~~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
|+-|+++.++.+.+. ++..+++.+....-..+.+..|.++
T Consensus 26 GkPli~~~i~~l~~~~~~~~ivv~t~~~~i~~~~~~~~~~v 66 (238)
T PRK13368 26 GKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAFGGKV 66 (238)
T ss_pred CcCHHHHHHHHHHhcCCCCeEEEECChHHHHHHHHHcCCeE
Confidence 578888888888876 7777666554444445556667654
No 200
>PRK06770 hypothetical protein; Provisional
Probab=29.22 E-value=19 Score=26.65 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=27.7
Q ss_pred CcccccccccceEEEecCCCCHHHHHHHHHh
Q psy16071 1 MSRRKMSKEEIDYVYPIPEDKYNDVIEHLRY 31 (225)
Q Consensus 1 ~~~~~~~~~~~~~ir~~~~~D~~~i~~ll~~ 31 (225)
|+|+|+...++.-.-+++++.++.+.+++..
T Consensus 79 MtHQKV~A~~KwG~~~mT~enI~~l~~~i~~ 109 (180)
T PRK06770 79 MTHQKVKADEKWGFIEMTQENIEKLKDIINS 109 (180)
T ss_pred HHhhhhhhhcccceEecCHHHHHHHHHHHhc
Confidence 8999999888888999999999999998864
No 201
>CHL00041 rps11 ribosomal protein S11
Probab=29.14 E-value=1.9e+02 Score=19.77 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEe-----cCHHHHHHHHHcCCeEEEEEecccc
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDA-----TGVFSQKISTKLGLETLIELEYRNH 198 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~-----~n~~~~~~y~k~Gf~~~~~~~~~~~ 198 (225)
+....+.+.+.|.++|++.+.+.. .-..+.+-.++.|+++....+.+..
T Consensus 58 a~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~Tpi 111 (116)
T CHL00041 58 AQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPM 111 (116)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 445666788888999999876554 2366777888899987766555444
No 202
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=28.96 E-value=3.8e+02 Score=23.13 Aligned_cols=55 Identities=5% Similarity=-0.087 Sum_probs=42.7
Q ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEE
Q psy16071 137 ILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 137 ~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
.+..-|.|.=-.+|...-.-+.....+.|++.+......+....+|++.-|-+..
T Consensus 79 v~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~My~ENpgvd~yk~~vyIv~t 133 (431)
T TIGR01918 79 IFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSMYVENPGVDMFKKDVYVMIT 133 (431)
T ss_pred EEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEecccChHHHHHhhCcEEEEC
Confidence 3457899999999999988888888899999877654323788999987775543
No 203
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=28.79 E-value=1.3e+02 Score=20.69 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=16.1
Q ss_pred CHHHHHHHHH-cCCeEEEEEe
Q psy16071 175 GVFSQKISTK-LGLETLIELE 194 (225)
Q Consensus 175 n~~~~~~y~k-~Gf~~~~~~~ 194 (225)
-..+..||++ +||+......
T Consensus 11 ~e~s~~FY~~vLGf~~~~~~~ 31 (136)
T cd08342 11 AKQLASWFSTKLGFEPVAYHG 31 (136)
T ss_pred HHHHHHHHHHhcCCeEEEecC
Confidence 4788899999 8999877643
No 204
>PRK10150 beta-D-glucuronidase; Provisional
Probab=28.77 E-value=3.7e+02 Score=24.24 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=48.1
Q ss_pred cEEEEEEEEEcCCc--ccCCHHHHHHHHHHHHHHHcCCcEEEEEe--cCHHHHHHHHHcCCeEEEEEecc
Q psy16071 131 SIFECRILSVDNNY--RGRGLANELFKLSIDIASKAGFKVFKVDA--TGVFSQKISTKLGLETLIELEYR 196 (225)
Q Consensus 131 ~~~~l~~l~V~p~~--rg~Gig~~L~~~~~~~a~~~g~~~~~~~~--~n~~~~~~y~k~Gf~~~~~~~~~ 196 (225)
.-+++..++-++++ +|.++....+..-++.+|+.|++.+.+.. ..+.-..+.-++|+-+..+++..
T Consensus 290 ~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~ 359 (604)
T PRK10150 290 KPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAV 359 (604)
T ss_pred EEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccc
Confidence 34677777777775 45556667777788899999999887522 24556677788999999988754
No 205
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=28.66 E-value=1.2e+02 Score=19.73 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=19.1
Q ss_pred CCcEEEEEecC-HHHHHHHHH-cCCeEEEE
Q psy16071 165 GFKVFKVDATG-VFSQKISTK-LGLETLIE 192 (225)
Q Consensus 165 g~~~~~~~~~n-~~~~~~y~k-~Gf~~~~~ 192 (225)
|+..+.+.+.+ +.+..||++ +||+....
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeee
Confidence 44455555544 788899985 89987654
No 206
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=28.51 E-value=1.3e+02 Score=21.05 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=19.1
Q ss_pred cEEEEEecC-HHHHHHHHH-cCCeEEEEE
Q psy16071 167 KVFKVDATG-VFSQKISTK-LGLETLIEL 193 (225)
Q Consensus 167 ~~~~~~~~n-~~~~~~y~k-~Gf~~~~~~ 193 (225)
..+.+.+++ ..+.+||++ +||+....+
T Consensus 8 ~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 8 DHCLLTGEDIAETTRFFTDVLDFYLAERV 36 (143)
T ss_pred CEEEEecCCHHHHHHHHHHhcCCEEEEEE
Confidence 334455554 888999988 799976664
No 207
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=28.49 E-value=2.3e+02 Score=21.83 Aligned_cols=56 Identities=18% Similarity=0.098 Sum_probs=41.6
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEE
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~ 193 (225)
...++++-..|.+=.| -++..+...+..|.- +-++|++.--.....++||..+++.
T Consensus 99 a~IIA~DaT~R~RP~~--~~~~~i~~~k~~~~l-~MAD~St~ee~l~a~~~G~D~IGTT 154 (229)
T COG3010 99 ADIIAFDATDRPRPDG--DLEELIARIKYPGQL-AMADCSTFEEGLNAHKLGFDIIGTT 154 (229)
T ss_pred CcEEEeecccCCCCcc--hHHHHHHHhhcCCcE-EEeccCCHHHHHHHHHcCCcEEecc
Confidence 4568999999999888 666666665555553 3468887665566788999999873
No 208
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=28.23 E-value=72 Score=22.33 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=12.5
Q ss_pred EEEEecCCcEEEEEeccccc
Q psy16071 69 VMAVNGNGQVIGVALNGIQH 88 (225)
Q Consensus 69 ~va~~~~~~ivG~~~~~~~~ 88 (225)
+|.+-.+++|||+.+|.++.
T Consensus 102 VVfYLrd~~VvGillWNvf~ 121 (133)
T PF14721_consen 102 VVFYLRDDRVVGILLWNVFN 121 (133)
T ss_dssp EEEEEETTEEEEEEEES--S
T ss_pred EEEEEcCCeEEEEEEeeccC
Confidence 33333358999999987654
No 209
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=28.23 E-value=1.1e+02 Score=18.89 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=15.9
Q ss_pred CCeeEEEEecCCcEEEEEecc
Q psy16071 65 DNLSVMAVNGNGQVIGVALNG 85 (225)
Q Consensus 65 ~~~~~va~~~~~~ivG~~~~~ 85 (225)
.+..++-+|++|+|+|+=++.
T Consensus 29 ~edi~Idide~GkV~GiEi~~ 49 (69)
T COG5428 29 GEDILIDIDENGKVIGIEIWN 49 (69)
T ss_pred CCcEEEEecCCCcEEEEEEEc
Confidence 345677788889999998743
No 210
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=28.22 E-value=1.1e+02 Score=20.16 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=19.0
Q ss_pred CCcEEEEEecC-HHHHHHHHH-cCCeEEEE
Q psy16071 165 GFKVFKVDATG-VFSQKISTK-LGLETLIE 192 (225)
Q Consensus 165 g~~~~~~~~~n-~~~~~~y~k-~Gf~~~~~ 192 (225)
|+..+.+.+.+ +.+..||++ +||+....
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 34444455544 788999998 69987644
No 211
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=27.78 E-value=2.1e+02 Score=19.83 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=29.1
Q ss_pred HHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEEEE
Q psy16071 157 SIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIEL 193 (225)
Q Consensus 157 ~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~~~ 193 (225)
+.+.+++.|...+.+---.+.+...++..|.++..--
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~ 93 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAP 93 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecC
Confidence 3466788899987766667999999999999877543
No 212
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.76 E-value=4e+02 Score=23.00 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=41.9
Q ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 137 ILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 137 ~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
.+..-|.|.=-.+|...-.-+.....+.|++.+......+....+|++.-|-+.
T Consensus 79 v~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaMy~ENpgvd~yk~~vyIv~ 132 (431)
T TIGR01917 79 IFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAMYEENPGADMFKKEVYVIP 132 (431)
T ss_pred EEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEecccChHHHHHhhCcEEEE
Confidence 345789999999999998888888889999987765432378899998776543
No 213
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=27.74 E-value=1.5e+02 Score=21.88 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 147 RGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 147 ~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
.|+|++=..++.+ .|+.|++.++..-.+..++..-+.-||++.
T Consensus 10 iGyGsQG~a~AlN-LrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~ 52 (165)
T PF07991_consen 10 IGYGSQGHAHALN-LRDSGVNVIVGLREGSASWEKAKADGFEVM 52 (165)
T ss_dssp ES-SHHHHHHHHH-HHHCC-EEEEEE-TTCHHHHHHHHTT-ECC
T ss_pred ECCChHHHHHHHH-HHhCCCCEEEEecCCCcCHHHHHHCCCeec
Confidence 3677663333333 377799876666666678999999999875
No 214
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=27.39 E-value=2.5e+02 Score=20.62 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=32.1
Q ss_pred CcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEE
Q psy16071 143 NYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 143 ~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
..+..-|.+.|++++++.+++.++..+++.+.+.....+....|++.+.
T Consensus 22 ~~~~~~l~~~ll~~~l~~l~~~~~~~vvvv~~~~~~~~~~~~~~v~~i~ 70 (195)
T TIGR03552 22 PEEREELALAMLRDVITALRGAGAGAVLVVSPDPALLEAARNLGAPVLR 70 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHhcCCEEEe
Confidence 3466778888888888888877755455544454444555666776543
No 215
>KOG0023|consensus
Probab=27.30 E-value=86 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeE
Q psy16071 147 RGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 147 ~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
-|+|. |-..++++|+..|.+.+.++.++..-....+++|-+.
T Consensus 188 ~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~ 229 (360)
T KOG0023|consen 188 VGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV 229 (360)
T ss_pred ecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce
Confidence 47777 8888999999999997777777666678888898753
No 216
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=27.19 E-value=1.1e+02 Score=22.93 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHH-cCCcEEEEEecCHHHHHHHHHcCCeE
Q psy16071 150 ANELFKLSIDIASK-AGFKVFKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 150 g~~L~~~~~~~a~~-~g~~~~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
|+-|+.+.++.|++ ..+..+++.+++..-....+++|..+
T Consensus 23 gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g~~v 63 (217)
T PF02348_consen 23 GKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYGAKV 63 (217)
T ss_dssp TEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTTSEE
T ss_pred CccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcCCee
Confidence 35799999999976 45677888888888888999999544
No 217
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=26.59 E-value=98 Score=22.24 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=18.3
Q ss_pred CCcEEEEEecC-HHHHHHHHH-cCCeEEE
Q psy16071 165 GFKVFKVDATG-VFSQKISTK-LGLETLI 191 (225)
Q Consensus 165 g~~~~~~~~~n-~~~~~~y~k-~Gf~~~~ 191 (225)
++..+.+.+++ ..|..||++ +||+.+.
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~ 32 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIM 32 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEe
Confidence 34444444444 889999987 7998754
No 218
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.54 E-value=1.5e+02 Score=19.72 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=19.0
Q ss_pred CcEEEEEecC-HHHHHHHHHc----CCeEEEEE
Q psy16071 166 FKVFKVDATG-VFSQKISTKL----GLETLIEL 193 (225)
Q Consensus 166 ~~~~~~~~~n-~~~~~~y~k~----Gf~~~~~~ 193 (225)
+..+.+.+.| ..+.+||++. ||+.....
T Consensus 2 i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 2 IHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee
Confidence 3444444544 7788999885 99877653
No 219
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=26.20 E-value=1.1e+02 Score=20.30 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=17.5
Q ss_pred cEEEEEecC-HHHHHHHHH-cCCeEEEE
Q psy16071 167 KVFKVDATG-VFSQKISTK-LGLETLIE 192 (225)
Q Consensus 167 ~~~~~~~~n-~~~~~~y~k-~Gf~~~~~ 192 (225)
..+.+.+++ ..+.+||+. +||+....
T Consensus 4 ~~v~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 4 GYLGVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cEEEEEeCCHHHHHHHHHhccCceeccC
Confidence 334444544 788999977 79987543
No 220
>PRK13690 hypothetical protein; Provisional
Probab=25.90 E-value=2.8e+02 Score=20.67 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHcCCcEEEEEec---CHHHH---HHHHHcCCeEEEEEec
Q psy16071 148 GLANELFKLSIDIASKAGFKVFKVDAT---GVFSQ---KISTKLGLETLIELEY 195 (225)
Q Consensus 148 Gig~~L~~~~~~~a~~~g~~~~~~~~~---n~~~~---~~y~k~Gf~~~~~~~~ 195 (225)
-+|..+++.+.+..++.|+.. .+-|. |.+-. ...+++||+.+.-+|-
T Consensus 50 eva~~i~~~l~~~~~~~gi~L-A~QcCEHLNRALvvEr~~a~~~~le~V~VvP~ 102 (184)
T PRK13690 50 EVAEAIVEALLEVLKETGIHL-AVQGCEHLNRALVVEREVAEKYGLEIVTVVPV 102 (184)
T ss_pred HHHHHHHHHHHHHhhhcCcEE-EEechhhhHHHHHHhHHHHHHcCCeEEEEecC
Confidence 367789999999999999874 33332 32221 3677889999988764
No 221
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=25.71 E-value=1.2e+02 Score=20.05 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=17.7
Q ss_pred EEEEecC-HHHHHHHHH-cCCeEEEEE
Q psy16071 169 FKVDATG-VFSQKISTK-LGLETLIEL 193 (225)
Q Consensus 169 ~~~~~~n-~~~~~~y~k-~Gf~~~~~~ 193 (225)
+.+.+.+ +.+..||++ +||+.....
T Consensus 8 v~l~v~Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 8 VQLRVLDLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred EEEEeCCHHHHHHHHHhccCCEeeeec
Confidence 4444444 788999976 799876653
No 222
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=25.64 E-value=1.5e+02 Score=22.75 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeE
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
|+.|+++.++.+.+.|+..+++.+..+.-.....+.|...
T Consensus 26 Gkpll~~~l~~l~~~~i~~ivvv~~~~~i~~~~~~~~~~v 65 (245)
T PRK05450 26 GKPMIVRVYERASKAGADRVVVATDDERIADAVEAFGGEV 65 (245)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHcCCEE
Confidence 4778888888887778777665444333334445566544
No 223
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=25.50 E-value=1.8e+02 Score=19.31 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=19.1
Q ss_pred CcEEEEEecC-HHHHHHHHH-cCCeEEEE
Q psy16071 166 FKVFKVDATG-VFSQKISTK-LGLETLIE 192 (225)
Q Consensus 166 ~~~~~~~~~n-~~~~~~y~k-~Gf~~~~~ 192 (225)
+..+.+.+.+ ..+..||++ +||+....
T Consensus 2 i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 2 INHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred cceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 4455555555 778899987 79987654
No 224
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=24.69 E-value=1.6e+02 Score=19.77 Aligned_cols=26 Identities=8% Similarity=-0.077 Sum_probs=18.3
Q ss_pred EEEEEecC-HHHHHHHHH-cCCeEEEEE
Q psy16071 168 VFKVDATG-VFSQKISTK-LGLETLIEL 193 (225)
Q Consensus 168 ~~~~~~~n-~~~~~~y~k-~Gf~~~~~~ 193 (225)
.+.+.+.+ ..+..||++ +||+.....
T Consensus 4 hv~l~v~D~~~s~~FY~~~lG~~~~~~~ 31 (134)
T cd08348 4 HVVLYVRDLEAMVRFYRDVLGFTVTDRG 31 (134)
T ss_pred EEEEEecCHHHHHHHHHHhcCCEEEeec
Confidence 34455544 788899987 899876553
No 225
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=24.55 E-value=52 Score=20.83 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.1
Q ss_pred EEEEEcCCcccCCHHHHHHHHHHH
Q psy16071 136 RILSVDNNYRGRGLANELFKLSID 159 (225)
Q Consensus 136 ~~l~V~p~~rg~Gig~~L~~~~~~ 159 (225)
..++++|+..|+.+.+++.+.+..
T Consensus 48 VIiltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 48 VIILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred EEEEECCCHHHHHHHHHHHHHhcc
Confidence 357899999999999999887643
No 226
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=24.49 E-value=1e+02 Score=17.14 Aligned_cols=17 Identities=18% Similarity=0.471 Sum_probs=12.6
Q ss_pred eeEEEEecCCcEEEEEe
Q psy16071 67 LSVMAVNGNGQVIGVAL 83 (225)
Q Consensus 67 ~~~va~~~~~~ivG~~~ 83 (225)
..+.+.|++|+++|++.
T Consensus 31 ~~~~V~d~~~~~~G~is 47 (57)
T PF00571_consen 31 SRLPVVDEDGKLVGIIS 47 (57)
T ss_dssp SEEEEESTTSBEEEEEE
T ss_pred cEEEEEecCCEEEEEEE
Confidence 34556666799999986
No 227
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=24.29 E-value=1.1e+02 Score=18.73 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCcEEEEEecCHHHHHHHHHc
Q psy16071 154 FKLSIDIASKAGFKVFKVDATGVFSQKISTKL 185 (225)
Q Consensus 154 ~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~ 185 (225)
+..+++.|.+.|+..+.+.+++........+.
T Consensus 9 l~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~ 40 (87)
T PF13456_consen 9 LLEALQLAWELGIRKIIVESDSQLVVDAINGR 40 (87)
T ss_dssp HHHHHHHHHCCT-SCEEEEES-HHHHHHHTTS
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccccccccc
Confidence 55788899999999999888887776666554
No 228
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=24.24 E-value=56 Score=22.80 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=14.4
Q ss_pred CHHHHHHHHHcCCeEEEE
Q psy16071 175 GVFSQKISTKLGLETLIE 192 (225)
Q Consensus 175 n~~~~~~y~k~Gf~~~~~ 192 (225)
-.++..||+.+||+.-..
T Consensus 14 L~~S~~Fy~alGfk~Npq 31 (133)
T COG3607 14 LEASKAFYTALGFKFNPQ 31 (133)
T ss_pred HHHHHHHHHHhCcccCCC
Confidence 378889999999986543
No 229
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=24.20 E-value=67 Score=22.48 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.1
Q ss_pred EEEEcCCcccCCHHHHHHHHHHH
Q psy16071 137 ILSVDNNYRGRGLANELFKLSID 159 (225)
Q Consensus 137 ~l~V~p~~rg~Gig~~L~~~~~~ 159 (225)
.+-+||+++|.-|.++|.+++-.
T Consensus 59 IILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 59 IILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEEeCCCcchHHHHHHHHHHhcc
Confidence 35599999999999999998766
No 230
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=24.14 E-value=2.2e+02 Score=21.38 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeE
Q psy16071 147 RGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 147 ~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
..-...+++...+.+++.|++.+.....+.....+..++|+..
T Consensus 185 ~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~l~~~G~~~ 227 (236)
T PF00563_consen 185 DEEAQSLLQSLINLAKSLGIKVIAEGVESEEQLELLKELGVDY 227 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTT-EEEEECE-SHHHHHHHHHTTESE
T ss_pred hhhHHHHHHHHHHHhhccccccceeecCCHHHHHHHHHcCCCE
Confidence 4567889999999999999987666668888899999999863
No 231
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=24.14 E-value=2.1e+02 Score=18.52 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 151 NELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 151 ~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
-.++....+.+++.|... .+...++...++++..|+...
T Consensus 61 l~~L~~~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 61 LGVLLGRYKQVRRVGGQL-VLVSVSPRVARLLDITGLLRI 99 (108)
T ss_pred HHHHHHHHHHHHhcCCEE-EEEeCCHHHHHHHHHhChhhe
Confidence 345666777778888763 444457888899999998653
No 232
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=23.92 E-value=1.8e+02 Score=24.26 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHHHHcC--CcE---EEEEecCHHHHHHHHHcCCeE
Q psy16071 157 SIDIASKAG--FKV---FKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 157 ~~~~a~~~g--~~~---~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
++..+++.+ ++. ..+..+|....+||.++|.+.
T Consensus 103 ~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~r 140 (347)
T COG0826 103 LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKR 140 (347)
T ss_pred HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEE
Confidence 466777777 554 234568999999999999754
No 233
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=23.92 E-value=2.3e+02 Score=20.88 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHHcCCcEEEEEec---CHHHH---HHHHHcCCeEEEEEec
Q psy16071 148 GLANELFKLSIDIASKAGFKVFKVDAT---GVFSQ---KISTKLGLETLIELEY 195 (225)
Q Consensus 148 Gig~~L~~~~~~~a~~~g~~~~~~~~~---n~~~~---~~y~k~Gf~~~~~~~~ 195 (225)
-+|..+++.+.+..++.|+.. .+-|. |.+-. ...+++||+.+.-+|-
T Consensus 43 eva~~i~~~l~~~~~~~gi~l-A~Q~CEHlNRALvvEr~~a~~~~le~V~VvP~ 95 (172)
T TIGR01440 43 EVAETIVNALDVVLKKTGVTL-AFQGCEHINRALVMERSVAEPLGMEEVSVVPD 95 (172)
T ss_pred HHHHHHHHHHHHHhhhcCeEE-EEechhhhhHHHHHhHHHHHHcCCceEEEecC
Confidence 356788888999999998874 33332 32221 3678889999887664
No 234
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=23.61 E-value=2.9e+02 Score=20.79 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=41.3
Q ss_pred EEEEEcCCccc----CCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeE
Q psy16071 136 RILSVDNNYRG----RGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 136 ~~l~V~p~~rg----~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
..+.+++.+-. ..-...+++.+...++..|++.+.....+.....+..++|+..
T Consensus 169 d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~~~~~gi~~ 226 (240)
T cd01948 169 DYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDY 226 (240)
T ss_pred CEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHcCCCe
Confidence 44566665532 2455788999999999999987666668888899999999853
No 235
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.93 E-value=2e+02 Score=18.92 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=15.9
Q ss_pred EEEecC-HHHHHHHHH-cCCeEEE
Q psy16071 170 KVDATG-VFSQKISTK-LGLETLI 191 (225)
Q Consensus 170 ~~~~~n-~~~~~~y~k-~Gf~~~~ 191 (225)
.+.+++ ..+.+||++ +||+...
T Consensus 5 ~l~v~D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 5 IIYVEDVEKTLEFYERAFGFERRF 28 (125)
T ss_pred EEEEcCHHHHHHHHHHhhCCeEEe
Confidence 344444 888999988 6998754
No 236
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=22.88 E-value=2.4e+02 Score=18.88 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEE
Q psy16071 156 LSIDIASKAGFKVFKVDATGVFSQKISTKLGLETL 190 (225)
Q Consensus 156 ~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~ 190 (225)
.+++.|+..|. .+++...++.-..+.+++|...+
T Consensus 5 ~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~ 38 (130)
T PF00107_consen 5 MAIQLAKAMGA-KVIATDRSEEKLELAKELGADHV 38 (130)
T ss_dssp HHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEE
T ss_pred HHHHHHHHcCC-EEEEEECCHHHHHHHHhhccccc
Confidence 45678899994 45666678888899999995444
No 237
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=22.64 E-value=1.5e+02 Score=18.07 Aligned_cols=32 Identities=16% Similarity=-0.004 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCeEEEEE-ecccccccCCCcccC
Q psy16071 176 VFSQKISTKLGLETLIEL-EYRNHLDSATGLPMF 208 (225)
Q Consensus 176 ~~~~~~y~k~Gf~~~~~~-~~~~~~~~~~g~~~f 208 (225)
.-..+..++.||..+.+. +-..|.. .+|.++-
T Consensus 10 ke~ik~Le~~Gf~~vrqkGSH~q~kH-p~~~~vt 42 (66)
T COG1724 10 KEVIKALEKDGFQLVRQKGSHRQYKH-PDGGRVT 42 (66)
T ss_pred HHHHHHHHhCCcEEEEeecceeEEEc-CCCCEEE
Confidence 445788999999888765 5556666 4465554
No 238
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=22.43 E-value=1e+02 Score=23.96 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=27.2
Q ss_pred CCcccCCHHHHHHHHHHHHHHHcCCcEEEEEe
Q psy16071 142 NNYRGRGLANELFKLSIDIASKAGFKVFKVDA 173 (225)
Q Consensus 142 p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~ 173 (225)
|...|+--|..-+..+++.|.+.|++.+++.+
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~ya 51 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLYA 51 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 45668888999999999999999999977554
No 239
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=22.35 E-value=1.7e+02 Score=20.89 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=20.3
Q ss_pred CCcEEEEEecC-HHHHHHHHH-cCCeEEEEE
Q psy16071 165 GFKVFKVDATG-VFSQKISTK-LGLETLIEL 193 (225)
Q Consensus 165 g~~~~~~~~~n-~~~~~~y~k-~Gf~~~~~~ 193 (225)
|+..+.+.+.+ ..+..||++ +||+.....
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~ 31 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEE 31 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeee
Confidence 34455555554 889999976 699987654
No 240
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=22.35 E-value=1.7e+02 Score=19.90 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHcCCcEEE
Q psy16071 148 GLANELFKLSIDIASKAGFKVFK 170 (225)
Q Consensus 148 Gig~~L~~~~~~~a~~~g~~~~~ 170 (225)
+|...+++.+.+.|+++|++.+.
T Consensus 5 si~~~iv~~v~~~a~~~~~~~V~ 27 (114)
T PRK03681 5 TLCQRALELIEQQAAKHGAKRVT 27 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEE
Confidence 68889999999999999988743
No 241
>PRK11478 putative lyase; Provisional
Probab=22.33 E-value=1.2e+02 Score=20.25 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=17.0
Q ss_pred cEEEEEecC-HHHHHHHHH-cCCeEEE
Q psy16071 167 KVFKVDATG-VFSQKISTK-LGLETLI 191 (225)
Q Consensus 167 ~~~~~~~~n-~~~~~~y~k-~Gf~~~~ 191 (225)
..+.+.+++ ..+..||++ +||+...
T Consensus 8 ~hv~l~v~D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 8 HHIAIIATDYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCEecc
Confidence 334444444 788999976 7999764
No 242
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=22.31 E-value=3.1e+02 Score=19.82 Aligned_cols=56 Identities=7% Similarity=-0.052 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEe-------------cCHHHHHHHHHcCCeEEEEEecccccccCCCccc
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDA-------------TGVFSQKISTKLGLETLIELEYRNHLDSATGLPM 207 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~-------------~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~g~~~ 207 (225)
+....+.+.+.|.++|+..+.+.. .-+.+++-..+.|+++....+.+..- .+|-++
T Consensus 74 Aq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~DvTPiP--hNGcRp 142 (149)
T PTZ00129 74 AMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIP--TDSTRR 142 (149)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCC--CCCCCC
Confidence 455667788899999999966544 23778899999999998777766664 455333
No 243
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.29 E-value=1e+02 Score=24.07 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=26.9
Q ss_pred CCcccCCHHHHHHHHHHHHHHHcCCcEEEEEe
Q psy16071 142 NNYRGRGLANELFKLSIDIASKAGFKVFKVDA 173 (225)
Q Consensus 142 p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~ 173 (225)
|...|+--|..-+..+++.|.+.|++.+++.+
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~Ya 58 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYV 58 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 44568888999999999999999999976544
No 244
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=22.12 E-value=60 Score=21.52 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=25.0
Q ss_pred EEEEEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE
Q psy16071 135 CRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172 (225)
Q Consensus 135 l~~l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~ 172 (225)
+-.++++++-+- =|+.|.+++++.+++.|+...++.
T Consensus 5 ~Lriy~~e~~~~--~g~~l~~~ll~~~~~~gi~GaTV~ 40 (101)
T PF02641_consen 5 LLRIYLSESDRW--GGKPLYEWLLERAREAGIAGATVF 40 (101)
T ss_dssp EEEEEEETT-EE--TTEEHHHHHHHHHHHTT-SEEEEE
T ss_pred EEEEEEcCcccc--CceEHHHHHHHHHHHCCCCeEEEE
Confidence 445777776553 245788899999999999987654
No 245
>PLN02384 ribose-5-phosphate isomerase
Probab=22.03 E-value=2.5e+02 Score=22.46 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=30.5
Q ss_pred cCCHHHHH---HHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEE
Q psy16071 146 GRGLANEL---FKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 146 g~Gig~~L---~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
|.|=|+.. ++.+-++.++.+++.+.+.+++..+..+.+++|.....
T Consensus 54 GLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~T~~~a~~~GIpl~~ 102 (264)
T PLN02384 54 GLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSD 102 (264)
T ss_pred EecchHHHHHHHHHHHHhhhhccccceEEEcCcHHHHHHHHHcCCcEec
Confidence 45556653 34444444454455566677899999999999997554
No 246
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=21.79 E-value=2.6e+02 Score=23.26 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=27.8
Q ss_pred HHHHHHcCCcEEEEEecC-HHHHHHHHHcCCeEEEEEe
Q psy16071 158 IDIASKAGFKVFKVDATG-VFSQKISTKLGLETLIELE 194 (225)
Q Consensus 158 ~~~a~~~g~~~~~~~~~n-~~~~~~y~k~Gf~~~~~~~ 194 (225)
.+..+.+|++.+.+.+.| +.-..-.+.+|.+++..+.
T Consensus 301 aqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~e~v~ 338 (339)
T PRK09314 301 AQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIVETIE 338 (339)
T ss_pred HHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEEEEEe
Confidence 455578899999988888 6545556788889887764
No 247
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=21.74 E-value=1.7e+02 Score=22.57 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=25.9
Q ss_pred EcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEe
Q psy16071 140 VDNNYRGRGLANELFKLSIDIASKAGFKVFKVDA 173 (225)
Q Consensus 140 V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~ 173 (225)
.+|+|+|. =+..|++++.+..++.|+...-+++
T Consensus 123 td~~~Kg~-~S~~lL~~a~~ll~~~G~~I~NvD~ 155 (216)
T PLN02862 123 TDPKWKGA-DSSVFIKEAVRLMHEAGYEIGNLDA 155 (216)
T ss_pred CChhhCCC-CHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 46777766 4789999999999999998754443
No 248
>COG3146 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.51 E-value=2.7e+02 Score=23.21 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=42.6
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCeEEE
Q psy16071 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLI 191 (225)
Q Consensus 138 l~V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~~~~ 191 (225)
+-+++..-..-+...|+..+.+.|.+.|+..+-+....+.-+...++.||-...
T Consensus 121 lL~~~~~d~~~~~~~L~~~l~~~~~~~glSS~Hv~F~~~~~~~~l~~~Gfl~r~ 174 (387)
T COG3146 121 LLARDGEDEEEVRQALLAGLDELCEQSGLSSAHVTFVDEDEQPALEKAGFLHRL 174 (387)
T ss_pred eecCccccHHHHHHHHHHHHHHHHHhcCCCceeEecCCHHHHHHHHhccchhhc
Confidence 446666655667788899999999999999887777777778899999995543
No 249
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=21.45 E-value=2.2e+02 Score=19.95 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=18.9
Q ss_pred EcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEEe
Q psy16071 140 VDNNYRGRGLANELFKLSIDIASKAGFKVFKVDA 173 (225)
Q Consensus 140 V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~~ 173 (225)
-+|||. =++.+++.|++.|++.+++..
T Consensus 31 ~SpEy~-------Dl~l~L~~~k~~g~~~lfVi~ 57 (130)
T PF04914_consen 31 KSPEYD-------DLQLLLDVCKELGIDVLFVIQ 57 (130)
T ss_dssp S-THHH-------HHHHHHHHHHHTT-EEEEEE-
T ss_pred CCccHH-------HHHHHHHHHHHcCCceEEEec
Confidence 466665 468899999999999876654
No 250
>PRK10291 glyoxalase I; Provisional
Probab=21.32 E-value=1.3e+02 Score=20.26 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=14.9
Q ss_pred CHHHHHHHHH-cCCeEEEEE
Q psy16071 175 GVFSQKISTK-LGLETLIEL 193 (225)
Q Consensus 175 n~~~~~~y~k-~Gf~~~~~~ 193 (225)
-+.+..||++ +||+.+...
T Consensus 7 le~s~~FY~~~LG~~~~~~~ 26 (129)
T PRK10291 7 LQRSIDFYTNVLGMKLLRTS 26 (129)
T ss_pred HHHHHHHHHhccCCEEEEee
Confidence 3788999977 799887654
No 251
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=21.12 E-value=3.4e+02 Score=20.42 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=36.8
Q ss_pred ceEEEecCCCCHHHHHHHHHhhccCCCcchhhccccCCCCCcHHHHHHHHHhccCCe--eEEEE-ecC-CcEEEEEec
Q psy16071 11 IDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNL--SVMAV-NGN-GQVIGVALN 84 (225)
Q Consensus 11 ~~~ir~~~~~D~~~i~~ll~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~va~-~~~-~~ivG~~~~ 84 (225)
.|.+....+.|...|..+|.+.|.. ..+ ....+ ....+.++. +++-. |.+ +.+.|++..
T Consensus 6 dFe~~dp~~~D~hgIk~LL~ql~~~-~~~-----------dl~~L---adlIi~Q~~vGsvVK~~d~~e~dvyg~~Sv 68 (194)
T PF13862_consen 6 DFEFFDPNEIDFHGIKNLLQQLFLD-AEI-----------DLSEL---ADLIIEQNNVGSVVKQADGDEDDVYGFLSV 68 (194)
T ss_pred EEEeeCCChhhHHHHHHHHHHhccc-cCc-----------CHHHH---HHHHHcCCCCceEEEecCCCCCcceEEEEE
Confidence 3667788889999999999998842 111 11223 333344443 55555 433 788898664
No 252
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.99 E-value=1.8e+02 Score=19.02 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=18.3
Q ss_pred ccCCHHHHHHH--HHHHHHHHcCCcE
Q psy16071 145 RGRGLANELFK--LSIDIASKAGFKV 168 (225)
Q Consensus 145 rg~Gig~~L~~--~~~~~a~~~g~~~ 168 (225)
.|.|+|+-++= .+.+.++++|++.
T Consensus 8 CG~GvgSS~~ik~kve~~l~~~gi~~ 33 (93)
T COG3414 8 CGNGVGSSTMIKMKVEEVLKELGIDV 33 (93)
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 58999986553 3668889999974
No 253
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.85 E-value=1.9e+02 Score=19.63 Aligned_cols=28 Identities=4% Similarity=0.052 Sum_probs=18.9
Q ss_pred CCcEEEEEecC-HHHHHHHHH-cCCeEEEE
Q psy16071 165 GFKVFKVDATG-VFSQKISTK-LGLETLIE 192 (225)
Q Consensus 165 g~~~~~~~~~n-~~~~~~y~k-~Gf~~~~~ 192 (225)
|+..+.+.+++ ..+.+||+. +||+.+.+
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEe
Confidence 34445555554 788999977 79976554
No 254
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.63 E-value=4.2e+02 Score=20.67 Aligned_cols=56 Identities=9% Similarity=0.127 Sum_probs=40.2
Q ss_pred EEEEEEEcCCcccCCHHHHHHHHHHHHH---HHcCCcE-EEEEe-cCHHHHHHHHHcCCeE
Q psy16071 134 ECRILSVDNNYRGRGLANELFKLSIDIA---SKAGFKV-FKVDA-TGVFSQKISTKLGLET 189 (225)
Q Consensus 134 ~l~~l~V~p~~rg~Gig~~L~~~~~~~a---~~~g~~~-~~~~~-~n~~~~~~y~k~Gf~~ 189 (225)
++..++|.|.|.||..-...++.+.+.- +++|+.. +.++- -|..+.+.....|-..
T Consensus 143 ~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~ 203 (228)
T PRK08091 143 LIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDW 203 (228)
T ss_pred EEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCE
Confidence 5677999999999998887777766543 4567664 34454 3677777788888653
No 255
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=20.57 E-value=2e+02 Score=20.93 Aligned_cols=32 Identities=16% Similarity=0.503 Sum_probs=24.9
Q ss_pred EcCCcccCCHHHHHHHHHHHHHHHcCCcEEEEE
Q psy16071 140 VDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172 (225)
Q Consensus 140 V~p~~rg~Gig~~L~~~~~~~a~~~g~~~~~~~ 172 (225)
.+|+|.|. =+..|++.+.+.+++.|+...-++
T Consensus 63 ~d~~~k~~-~S~~lL~~~~~~~~~~g~~i~niD 94 (153)
T cd00554 63 TDPKWKGA-DSRILLEEALKLIREKGYEIVNID 94 (153)
T ss_pred CChhhCCC-CHHHHHHHHHHHHHHcCCEEEEEE
Confidence 46777766 578899999999999998764333
No 256
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.46 E-value=1.7e+02 Score=18.82 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.4
Q ss_pred HHHHHHHHH-cCCeEEEEEe
Q psy16071 176 VFSQKISTK-LGLETLIELE 194 (225)
Q Consensus 176 ~~~~~~y~k-~Gf~~~~~~~ 194 (225)
..+..||++ +||+...+..
T Consensus 10 ~~~~~fY~~~lG~~~~~~~~ 29 (119)
T cd07263 10 DKALAFYTEKLGFEVREDVP 29 (119)
T ss_pred HHHHHHHHhccCeEEEEeec
Confidence 778899998 8999877643
No 257
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.45 E-value=4.8e+02 Score=21.27 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHHHHHHHHcCCcEE
Q psy16071 146 GRGLANELFKLSIDIASKAGFKVF 169 (225)
Q Consensus 146 g~Gig~~L~~~~~~~a~~~g~~~~ 169 (225)
++|.+.+.+..+...++++|++.+
T Consensus 162 NRgHd~~~y~dav~r~rkrgIkvc 185 (312)
T COG1242 162 NRGHDFACYVDAVKRLRKRGIKVC 185 (312)
T ss_pred hcccchHHHHHHHHHHHHcCCeEE
Confidence 355566666677777777777653
No 258
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=20.42 E-value=1.5e+02 Score=22.29 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEe-cC---HHHHHHHHHcCCeEEEE
Q psy16071 149 LANELFKLSIDIASKAGFKVFKVDA-TG---VFSQKISTKLGLETLIE 192 (225)
Q Consensus 149 ig~~L~~~~~~~a~~~g~~~~~~~~-~n---~~~~~~y~k~Gf~~~~~ 192 (225)
.--.+++.+++..++.|...+++.. +. ......++..||..+..
T Consensus 20 T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 20 THPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 3347899999999999998655433 22 45778899999977644
No 259
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=20.32 E-value=2.6e+02 Score=18.14 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=16.1
Q ss_pred CHHHHHHHHH-cCCeEEEEEec
Q psy16071 175 GVFSQKISTK-LGLETLIELEY 195 (225)
Q Consensus 175 n~~~~~~y~k-~Gf~~~~~~~~ 195 (225)
-..+.+||++ +||+...+...
T Consensus 11 ~~~a~~fY~~~lG~~~~~~~~~ 32 (121)
T cd07233 11 LEKSLDFYTDVLGMKLLRRKDF 32 (121)
T ss_pred cHHHHHHHHhccCCeEEEEEec
Confidence 3788999987 59998776543
No 260
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=20.24 E-value=2.2e+02 Score=21.68 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHc-CCcEEEEEecCHHHHHHHHHcCCeE
Q psy16071 150 ANELFKLSIDIASKA-GFKVFKVDATGVFSQKISTKLGLET 189 (225)
Q Consensus 150 g~~L~~~~~~~a~~~-g~~~~~~~~~n~~~~~~y~k~Gf~~ 189 (225)
|+.|+++.++.+.+. |++.+++.+....-.....+.|...
T Consensus 25 gkpll~~~l~~l~~~~~i~~ivvv~~~~~i~~~~~~~~~~~ 65 (239)
T cd02517 25 GKPMIQHVYERAKKAKGLDEVVVATDDERIADAVESFGGKV 65 (239)
T ss_pred CcCHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHcCCEE
Confidence 467777777777776 7776555443333333444445443
No 261
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=20.24 E-value=25 Score=23.81 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=17.9
Q ss_pred cccCCHHHHHHHHHHHHHHHcCCc
Q psy16071 144 YRGRGLANELFKLSIDIASKAGFK 167 (225)
Q Consensus 144 ~rg~Gig~~L~~~~~~~a~~~g~~ 167 (225)
.|++|+|.+|++..-+..+..|+.
T Consensus 28 e~~r~Yg~q~Ld~lr~EFk~~Gy~ 51 (122)
T PF02334_consen 28 EQERGYGLQLLDELRSEFKPLGYR 51 (122)
T ss_dssp HTT-EBCTCHHHHHHHHHTTTT--
T ss_pred hcccchHHHHHHHHHHHhhhcCCC
Confidence 367889999999999888888865
No 262
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.20 E-value=2.4e+02 Score=18.60 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCHHHHHHHHHcCCe
Q psy16071 150 ANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLE 188 (225)
Q Consensus 150 g~~L~~~~~~~a~~~g~~~~~~~~~n~~~~~~y~k~Gf~ 188 (225)
|-..+..+.+.++.+|..... ...++.-.+.+++.||.
T Consensus 65 gi~~L~~~~~~~~~~g~~~~l-~~~~~~v~~~l~~~~~~ 102 (117)
T PF01740_consen 65 GIQALVDIIKELRRRGVQLVL-VGLNPDVRRILERSGLI 102 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-ESHHHHHHHHHHHTTGH
T ss_pred HHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHcCCC
Confidence 334667777888888988543 33467777889999984
No 263
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=20.15 E-value=1.2e+02 Score=19.39 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=14.6
Q ss_pred HHHHHHHHH-cCCeEEEE
Q psy16071 176 VFSQKISTK-LGLETLIE 192 (225)
Q Consensus 176 ~~~~~~y~k-~Gf~~~~~ 192 (225)
..+.+||++ +||+....
T Consensus 7 ~~a~~FY~~~lg~~~~~~ 24 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFD 24 (108)
T ss_dssp HHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHhcCCEEEEe
Confidence 678899998 89998884
No 264
>PRK15447 putative protease; Provisional
Probab=20.01 E-value=2e+02 Score=23.30 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=24.9
Q ss_pred HHHHcCCcEEE---EEecCHHHHHHHHHcCCeEE---EEEeccccc
Q psy16071 160 IASKAGFKVFK---VDATGVFSQKISTKLGLETL---IELEYRNHL 199 (225)
Q Consensus 160 ~a~~~g~~~~~---~~~~n~~~~~~y~k~Gf~~~---~~~~~~~~~ 199 (225)
.+++.|.+... +.+.|..+.++|+++|...+ .+++..+..
T Consensus 102 ~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELsl~eI~ 147 (301)
T PRK15447 102 LLAERGLPFVAGPALNCYNAATLALLARLGATRWCMPVELSRDWLA 147 (301)
T ss_pred HHHhcCCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCCHHHHH
Confidence 34445666422 34589999999999999533 234444443
Done!