RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16071
(225 letters)
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 33.0 bits (76), Expect = 0.014
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172
L+V YRG+G+ + L + + + A + G K +++
Sbjct: 31 LAVLPEYRGKGIGSALLEAAEEEARERGAKRLRLE 65
>gnl|CDD|233571 TIGR01778, TonB-copper, TonB-dependent copper receptor. This model
represents a family of proteobacterial TonB-dependent
outer membrane receptor/transporters which bind and
translocate copper ions. Two characterized members of
this family exist, outer membrane protein C (OprC) from
Pseudomonas aeruginosa and NosA from Pseudomonas
stutzeri which is responsible for providing copper for
the copper-containing N2O reducatse [Transport and
binding proteins, Cations and iron carrying compounds,
Transport and binding proteins, Porins].
Length = 636
Score = 33.3 bits (76), Expect = 0.082
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 159 DIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYRNHLDSA 202
D AGF ++ ++ +G++ L + Y HL+ A
Sbjct: 565 DFDKSAGFGTLSLNGAYRPMPNLTLSMGVDNLFDKRYAEHLNKA 608
>gnl|CDD|216007 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 29.9 bits (68), Expect = 0.23
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDAT 174
L+VD YRG+G+ L + + A + G K +++
Sbjct: 28 LAVDPEYRGKGIGTALLEALEEYARELGLKRIELEVL 64
>gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA
replication, recombination, and repair].
Length = 792
Score = 30.5 bits (69), Expect = 0.82
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 25/83 (30%)
Query: 149 LANELFKLSIDIASKAGFKVFKVDATGVF------------------SQKISTKLGLETL 190
E+ + + ++A + G +V D +F ++++ + L +
Sbjct: 538 FGREILRETKELAEEMGLRVIYGDTDSLFVTLPGATYEEAIKIGEELVEEVNER--LPSG 595
Query: 191 IELEYRNHLDSATGLPMFTPPSP 213
IELE P +
Sbjct: 596 IELEVEKVYK-----RFLLPTAK 613
>gnl|CDD|235142 PRK03624, PRK03624, putative acetyltransferase; Provisional.
Length = 140
Score = 28.4 bits (64), Expect = 1.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 138 LSVDNNYRGRGLANEL 153
L+V ++RGRG+ L
Sbjct: 74 LAVHPDFRGRGIGRAL 89
>gnl|CDD|225261 COG2388, COG2388, Predicted acetyltransferase [General function
prediction only].
Length = 99
Score = 27.7 bits (62), Expect = 1.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 140 VDNNYRGRGLANELFKLSIDIASKAGFKV 168
V + RG+G+A +L + +++ A +AG K+
Sbjct: 47 VPDELRGQGIAQKLVEKALEEAREAGLKI 75
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase.
Length = 763
Score = 29.1 bits (65), Expect = 2.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 2 SRRKMSKEEIDYVYPIPEDKYNDVIEHLRYNFFADEPLNKCV 43
+RR +KE++ Y +P+ +D D + + F PLNK V
Sbjct: 304 ARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLV 345
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 28.3 bits (63), Expect = 3.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 89 EGDVDEAIKKLETLNDKKF 107
E DVDEAIK L TL +K +
Sbjct: 258 ESDVDEAIKFLRTLEEKGY 276
>gnl|CDD|221903 pfam13030, DUF3891, Protein of unknown function (DUF3891). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are approximately 250 amino
acids in length.
Length = 221
Score = 28.0 bits (63), Expect = 3.7
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 191 IELEYRNHLDSATGLPM-FT--PPSPHT 215
IE + L+ TG P F P H
Sbjct: 55 IEWDAAPILNDETGAPYSFLDLPLEVHI 82
>gnl|CDD|201301 pfam00554, RHD, Rel homology domain (RHD). Proteins containing the
Rel homology domain (RHD) are eukaryotic transcription
factors. The RHD is composed of two structural domains.
This is the N-terminal domain that is similar to that
found in P53. The C-terminal domain has an
immunoglobulin-like fold (See pfam01833) that binds to
DNA.
Length = 169
Score = 27.3 bits (61), Expect = 4.9
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 85 GIQHEG--DVDEAIKKLETLNDKKFKQIFSML-----YDLNQ 119
GIQ DV+EA+K+ LN F F L DLN
Sbjct: 97 GIQCVKKKDVEEALKERIELNIDPFNVGFEALRQIKDMDLNV 138
>gnl|CDD|222034 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 136
Score = 26.9 bits (60), Expect = 5.5
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 144 YRGRGLANELFKLSIDIASKAGFKVFKVDATGVF-------SQKISTKLGLE 188
Y G+G A E + +D A F+ +D SQ++ KLG +
Sbjct: 89 YWGKGYATEAARALLDYA----FEELGLDRIVARIDPENIASQRVLEKLGFK 136
>gnl|CDD|225695 COG3153, COG3153, Predicted acetyltransferase [General function
prediction only].
Length = 171
Score = 27.2 bits (61), Expect = 5.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 138 LSVDNNYRGRGLANELFKLSIDIASKAG 165
L+VD Y+G+G+ + L + ++ AG
Sbjct: 81 LAVDPEYQGQGIGSALVREGLEALRLAG 108
>gnl|CDD|236088 PRK07757, PRK07757, acetyltransferase; Provisional.
Length = 152
Score = 26.7 bits (60), Expect = 6.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 134 ECRILSVDNNYRGRGLANELFKLSIDIASKAG-FKVF 169
E R L+V +YRG+G+ L + ++ A + G +VF
Sbjct: 67 EIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVF 103
>gnl|CDD|223532 COG0456, RimI, Acetyltransferases [General function prediction
only].
Length = 177
Score = 26.9 bits (59), Expect = 6.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 138 LSVDNNYRGRGLANELFKLSIDIASKAGF 166
L+VD YRGRG+ L +++ + G
Sbjct: 97 LAVDPEYRGRGIGRALLDEALERLRERGL 125
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 27.4 bits (61), Expect = 7.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 152 ELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLI 191
ELF LS D+ K K F+ G S + L T++
Sbjct: 298 ELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMM 337
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 27.3 bits (61), Expect = 7.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 11 IDYVYPIPEDKYNDVIEHLR 30
ID+VY IP D + V++ LR
Sbjct: 19 IDHVYGIPGDSIDAVVDALR 38
>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional.
Length = 521
Score = 27.1 bits (61), Expect = 8.1
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 174 TGVFSQKISTKLG-LETLIELEYRNHLDSATGLPMFTPPSPHT 215
T V I TK G ++ L+ +Y+ LDS+ + + +P + H
Sbjct: 45 TDVLRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPSTEHP 87
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1740
Score = 27.0 bits (59), Expect = 9.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 148 GLANELFKLSIDIASKAGFKVFK 170
GLA+ LFKL I S+ GFK +
Sbjct: 1375 GLADALFKLGIPYNSEEGFKFMR 1397
>gnl|CDD|237916 PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.
Length = 186
Score = 26.7 bits (59), Expect = 9.9
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 19/73 (26%)
Query: 140 VDNNYRGRGLANELFKLSIDIASKAGFKVFK-------VDATGVFSQKISTKLGLETLIE 192
+ Y+G+GLA KL++D GF V VD + I KLG E E
Sbjct: 90 ISPEYQGKGLATRAAKLAMDY----GFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGE 145
Query: 193 L--------EYRN 197
L EYRN
Sbjct: 146 LIHEFFINGEYRN 158
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.388
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,332,473
Number of extensions: 1052052
Number of successful extensions: 1179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1179
Number of HSP's successfully gapped: 35
Length of query: 225
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 132
Effective length of database: 6,812,680
Effective search space: 899273760
Effective search space used: 899273760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)