RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16071
(225 letters)
>d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 95
Score = 30.5 bits (69), Expect = 0.037
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 140 VDNNYRGRGLANELFKLSIDIASKAGFKV 168
V + RG GLA+ L + + AS +
Sbjct: 40 VPSFKRGLGLASHLCVAAFEHASSHSISI 68
>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945
{Enterococcus faecalis [TaxId: 1351]}
Length = 189
Score = 30.8 bits (68), Expect = 0.083
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 100 ETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRILSVDNNYRGRGLANELFKLSID 159
E + D+ +++F + + + +SVD +RG G+ ++L +
Sbjct: 79 EKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDERFRGMGIGSKLLDALPE 138
Query: 160 IASKAGFKVFK--VDATGVFSQKISTKLGLETLIELEYRNH 198
+A +G + VD ++K+ G + + + H
Sbjct: 139 VAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGH 179
>d1sqha_ d.108.1.5 (A:) Hypothetical protein cg14615-pa {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 297
Score = 30.0 bits (67), Expect = 0.18
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFK--VDATGVFSQKISTKLGLETLIELEY 195
L V RGL L ++ + AT S+ + ++G + + E+
Sbjct: 231 LQVLPKAERRGLGGLLAAAMSREIARGEEITLTAWIVATNWRSEALLKRIGYQKDLVNEW 290
>d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 308
Score = 29.3 bits (64), Expect = 0.32
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 128 DVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGV 176
D + E +L VD + RGL L + I ++ +D
Sbjct: 226 DHPGLGEVYVLGVDPAAQRRGLGQMLTSIGIVSLARRLGGRKTLDPAVE 274
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus
aureus [TaxId: 1280]}
Length = 102
Score = 27.6 bits (61), Expect = 0.53
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 134 ECRILSVDNNYRGRGLANELFKLSIDIASKAGFKV 168
V + G+G+ +L K ++ A + K+
Sbjct: 37 NIDHTGVSDELGGQGVGKKLLKAVVEHARENNLKI 71
>d2g3aa1 d.108.1.1 (A:1-137) Probable acetyltransferase Atu2258
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 137
Score = 27.1 bits (59), Expect = 1.2
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELE 194
L V RG+G+A +L ++ + A K G +D + + + G + L
Sbjct: 66 LFVPEAMRGQGIAPKLLAMAEEEARKRGCMGAYIDTMNPDALRTYERYGFTKIGSLG 122
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 203
Score = 27.2 bits (60), Expect = 1.4
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 85 GIQHEG----DVDEAIKKLETLNDKKFKQIFSMLYDLNQSLNLFSRYDVTSIFECRIL 138
GIQH D+ + L+ + + Y++ + V + IL
Sbjct: 84 GIQHVAFLTDDLVKTWDALKKIGMRFMTAPPDTYYEMLEGRLPDHGEPVDQLQARGIL 141
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2
{Escherichia coli [TaxId: 562]}
Length = 338
Score = 26.3 bits (57), Expect = 3.2
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 125 SRYDVTSIFECRILSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVD 172
+ T+ E + S + R L +F + F+ D
Sbjct: 27 TTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWD 74
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 163
Score = 25.6 bits (55), Expect = 4.3
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 69 VMAVNGNGQVIGVAL-NGIQHEGDVDEAIKKLETL 102
V ++ + + V + I E + + AI + L
Sbjct: 129 VFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163
>d2hv2a2 d.108.1.10 (A:2-286) Hypothetical protein EF1021
{Enterococcus faecalis [TaxId: 1351]}
Length = 285
Score = 25.6 bits (55), Expect = 4.7
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 138 LSVDNNYRGRGLANELFKLSIDIASKAGFKVFKVDATGVFSQKISTKLGLETLIELEYRN 197
++ YRG G + + K + +K + + FS + G E +
Sbjct: 80 VASYPEYRGEGGISAIMKEMLADLAKQKVALSYLA---PFSYPFYRQYGYE-QTFEQAEY 135
Query: 198 HLDSATGLPMFTPPS 212
+ P
Sbjct: 136 TIK-TEDWPRVKRVP 149
>d1tj1a2 c.1.23.2 (A:262-610) Proline dehydrohenase domain of
bifunctional PutA protein {Escherichia coli [TaxId:
562]}
Length = 349
Score = 25.6 bits (55), Expect = 5.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 91 DVDEAIKKLETLNDKKFKQIFSML 114
+ EA+ L +K F+ + ML
Sbjct: 3 TIAEALANARKLEEKGFRYSYDML 26
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId:
11082]}
Length = 152
Score = 25.1 bits (55), Expect = 6.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 72 VNGNGQVIGVALNGIQHEGD 91
V+ NG VIG+ NG+
Sbjct: 122 VDKNGDVIGLYGNGVIMPNG 141
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 123
Score = 24.4 bits (52), Expect = 7.4
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 22 YNDVIEHLRYNFFADEPLNKCVGLCETGRGHSELELHSILTLQDNLSVMAVNGNGQVIGV 81
+ + + D PL + T E+E ++I T+ +V G+G+V V
Sbjct: 49 FAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNI-TIATGETVERYEGDGRVQKV 107
Query: 82 ALNGIQHEGDV 92
+ ++ D+
Sbjct: 108 VTDKNAYDADL 118
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 24.5 bits (53), Expect = 7.8
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 7/81 (8%)
Query: 91 DVDEAIKKLETLNDKKFKQIFSMLY-------DLNQSLNLFSRYDVTSIFECRILSVDNN 143
EA+ LE + + F ++ + F + + N
Sbjct: 39 TAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGN 98
Query: 144 YRGRGLANELFKLSIDIASKA 164
+G E + A K
Sbjct: 99 ADHQGFDGEAMTIKHVAAHKV 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.388
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 810,701
Number of extensions: 36342
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 21
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)