BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16075
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/63 (95%), Positives = 62/63 (98%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct: 40 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 99
Query: 62 NQR 64
NQR
Sbjct: 100 NQR 102
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/63 (95%), Positives = 62/63 (98%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 125
Query: 62 NQR 64
NQR
Sbjct: 126 NQR 128
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/63 (95%), Positives = 62/63 (98%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 125
Query: 62 NQR 64
NQR
Sbjct: 126 NQR 128
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/64 (90%), Positives = 62/64 (96%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
VPGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct: 64 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 123
Query: 61 ANQR 64
ANQR
Sbjct: 124 ANQR 127
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct: 38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 97
Query: 62 N 62
N
Sbjct: 98 N 98
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
+ ISR+V GG AE +GLL DEVLE+NGI + GK +++V D++ L + P++
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSS 108
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I+ISR++PGG+A+ G L D++L VNG+ V G+ ++ +++ A ++ + V+
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 87
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
G +I++++PGG AE TG L +VLE NGI + K+ ++V ++ S I V+
Sbjct: 50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVR--- 106
Query: 63 QRANMSVPRRG 73
NMS P G
Sbjct: 107 LDLNMSGPSSG 117
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
+S ++PGG A+ G+ D +LEVNG+ V G + QV D++ A LI+TV
Sbjct: 47 VSAVLPGGAADRAGVRK-GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
+S ++PGG A+ G+ D +LEVNG+ V G + QV D++ A LI+TV
Sbjct: 47 VSAVLPGGAADRAGVRK-GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
Length = 101
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
+S ++PGG A+ G+ D +LEVNG+ V G + QV D++ A LI+TV
Sbjct: 47 VSAVLPGGAADRAGVRK-GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF+SR+ GG A G L V D VL +NG+ V D ++ A S + + ++
Sbjct: 39 GIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLE 95
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVKP 60
G+ + +VPGGLA+ G L D +L++ G V G + +QV ++ NS +++ P
Sbjct: 39 GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDP 98
Query: 61 ANQRANMSVPRRG 73
A + S P G
Sbjct: 99 AGDISVTSGPSSG 111
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
++R++ GG+ G L V DE+ E+NGI VA ++++Q+ M+ ++ + P+
Sbjct: 28 IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS 84
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
I ++R+ GG A+ +GL+ V DE+ EVNGI V K +++ ++ + + + P ++
Sbjct: 30 IIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSK 89
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVA 36
PGIFI++++PGG A G L VND VL VN + V+
Sbjct: 34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVS 68
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
PGIFI++++PGG A G L VND +L VN + V+ S + + + S + + V+
Sbjct: 39 PGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVR 96
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
++R++ GG+ G L V DE+LE+NG V S+DQ+ M + + V P Q
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPNQQ 97
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
++R++ GG+ G L V DE+LE+NG V S+DQ+ M + + V P Q
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPNQQ 97
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
GI++ +V GG A+ G LA D++L V+G + G S ++ ++M SS ++T++ A
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS--VVTLEVAK 96
Query: 63 QRA 65
Q A
Sbjct: 97 QGA 99
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
GI++ +V GG A+ G LA D++L V+G + G S ++ ++M SS ++T++ A
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS--VVTLEVAK 90
Query: 63 QRA 65
Q A
Sbjct: 91 QGA 93
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
GI++ +V GG A+ G LA D++L V+G + G S ++ ++M SS ++T++ A
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS--VVTLEVAK 90
Query: 63 QRA 65
Q A
Sbjct: 91 QGA 93
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
GI++ ++PG A G + VND+++ V+G+ + G + V +++ + A
Sbjct: 47 GIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVL-----------RNAG 95
Query: 63 QRANMSVPRRGSYSRTSQLSSDSHQSTQS 91
Q ++++ RR + S TS L S + T S
Sbjct: 96 QVVHLTLVRRKTSSSTSPLEPPSDRGTVS 124
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
GI++ +V GG A+ G LA D++L V+G + G S ++ ++M SS ++T++ A
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS--VVTLEVAK 96
Query: 63 QRA 65
Q A
Sbjct: 97 QGA 99
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILV 35
P IFI++++PGG A G L VND +L VN + V
Sbjct: 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 122
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVKP 60
GIFIS ++ GG A+ +G L D++L VNG+ + S +Q + + +I KP
Sbjct: 332 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 391
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR 64
FI+++ G LA++ G L DEVLE NG L+ G + ++V N+I+ KP Q
Sbjct: 68 FITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVY--------NIILESKPEPQ- 118
Query: 65 ANMSVPRRGSYS 76
+ V R G S
Sbjct: 119 VELVVSRSGPSS 130
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of
Numb-Binding Protein 2
Length = 95
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PG+FI L+ GGLA G L+ ND VL +N G L T + A ++ +
Sbjct: 29 PGVFILDLLEGGLAAQDGRLSSNDRVLAIN-----GHDLKYGTPELAAQ------IIQAS 77
Query: 62 NQRANMSVPRRG 73
+R N+++ R G
Sbjct: 78 GERVNLTIARPG 89
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
I++ ++P G A G L D ++EVNG+ +AGKS ++V ++
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLL 84
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVN 31
P IFI++++PGG A G L VND +L VN
Sbjct: 42 PSIFITKIIPGGAAAQDGRLRVNDSILFVN 71
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVN 31
P IFI++++PGG A G L VND +L VN
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVN 61
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
I++ ++P G A G L D ++EVNG+ +AGKS ++V ++
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLL 78
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKP 60
PGIFIS + PG L+ G L + D+++EVNG+ + +LD + V SS +L I++
Sbjct: 41 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFS--NLDHKEAVNVLKSSRSLTISIVA 97
Query: 61 ANQRANMSVPRRGSYS 76
A R R G S
Sbjct: 98 AAGRELFMTDRSGPSS 113
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILV 35
P IFI++++PGG A G L VND +L VN + V
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILV 35
P IFI++++PGG A G L VND +L VN + V
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVN 31
P IFI++++PGG A G L VND +L VN
Sbjct: 35 PSIFITKIIPGGAAAQDGRLRVNDSILFVN 64
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
PG++I L+PG A + G L++ D +LEVNG + G + D++
Sbjct: 35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLI 81
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVN 31
P IFI++++PGG A G L VND +L VN
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVN 61
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I IS L GGLAE TG + + D +L +N + GK L + ++ + + +K
Sbjct: 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIK 87
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGI 33
PGIFIS + PG L+ G L + D+++EVNG+
Sbjct: 27 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGV 57
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAG 37
GIF+ + GG A+ G + VND+++EV+GI + G
Sbjct: 112 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVG 146
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
G+FIS L+ GG A+S G L V DE++ +NG ++ + ++V +++
Sbjct: 111 GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLI 154
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 2 PG--IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIIT 57
PG I+I +VP G A++ G L DE++ V+G V GKS V +M A ++ +T
Sbjct: 25 PGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLT 84
Query: 58 VK 59
V+
Sbjct: 85 VR 86
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GI++ ++P G AES G + D VL VNG+ + G + Q + +
Sbjct: 43 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 87
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GI++ ++P G AES G + D VL VNG+ + G + Q + +
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 78
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA 49
PG FI + P AE++GL A D ++EVNG+ + GK V + A
Sbjct: 33 PGQFIRSVDPDSPAEASGLRA-QDRIVEVNGVCMEGKQHGDVVSAIRA 79
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF+S ++ GG A+ +G L D++L VNGI + G S +Q + + I +
Sbjct: 28 GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQ 84
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GI++ ++P G AES G + D VL VNG+ + G + Q + +
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 78
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GI++ ++P G AES G + D VL VNG+ + G + Q + +
Sbjct: 33 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 77
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GI++ ++P G AES G + D VL VNG+ + G + Q + +
Sbjct: 38 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 82
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
I++ ++P G A G L D ++EVNG+ + GKS ++V ++
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GI++ ++P G AES G + D VL VNG+ + G + Q + +
Sbjct: 41 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 85
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
GIF+S++V G A G L ++D ++EVNG ++ + DQ + +++ V
Sbjct: 42 GIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQV 97
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
PG FI + P AE++GL A D ++EVNG+ + GK V + A + V
Sbjct: 33 PGQFIRSVDPDSPAEASGLRA-QDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKS 39
GIF+ ++ GG A G L VND+++ VNG + GK+
Sbjct: 40 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKA 76
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
PG FI + P AE++GL A D ++EVNG+ + GK V + A + V
Sbjct: 33 PGQFIRSVDPDSPAEASGLRA-QDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
GI+I+ + PG AE +G L V D++LEVNG D+ ++ +S +LI+TVK
Sbjct: 47 GIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLL-KSSRHLILTVKDVG 104
Query: 63 Q 63
+
Sbjct: 105 R 105
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVKP 60
GIFIS ++ GG A+ +G L D++L VNG+ + S +Q + + +I KP
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98
Query: 61 -------ANQRANMS 68
AN R N S
Sbjct: 99 EEYSRFEANSRVNSS 113
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKS 39
GIF+ ++ GG A G L VND+++ VNG + GK+
Sbjct: 37 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKA 73
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
PG FI + P AE++GL A D ++EVNG+ + GK V + A + V
Sbjct: 28 PGQFIRSVDPDSPAEASGLRA-QDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 83
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS 52
G FI+++ G LA+ G L DEVLE NG + G + ++V ++++ + S
Sbjct: 55 GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKS 104
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
IF+ ++ GG A GL D +++VNG V GK+ QV ++ + + L ++V P +
Sbjct: 63 IFVKQVKEGGPAFEAGL-CTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKD 120
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNL---IITVK 59
G FI+++ G LA+ G L DEVLE NG + G + ++V ++++ + S II +
Sbjct: 55 GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR 114
Query: 60 PAN 62
P+
Sbjct: 115 PSG 117
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNG 32
G+F+S +V GG+A++ G L D++L VNG
Sbjct: 30 GVFVSDIVKGGIADADGRLMQGDQILMVNG 59
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAG 37
GIF+ + GG A+ G + VND+++EV+GI + G
Sbjct: 41 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVG 75
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKS 39
GIFI ++ GG A G L +ND+++ VNG + GKS
Sbjct: 56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS 92
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAG 37
GIF+ + GG A+ G + VND+++EV+GI + G
Sbjct: 36 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVG 70
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 2 PG--IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIIT 57
PG I I ++ G A+ G L DE++ V+GI VAGK+ V D+M A + + +T
Sbjct: 32 PGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLT 91
Query: 58 VK 59
V+
Sbjct: 92 VR 93
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDM----MVANSSNLIITV 58
GI++S + PG LAE G L V D++L VN KSL +VT + S L+++V
Sbjct: 36 GIYVSLVEPGSLAEKEG-LRVGDQILRVN-----DKSLARVTHAEAVKALKGSKKLVLSV 89
Query: 59 KPANQ 63
A +
Sbjct: 90 YSAGR 94
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVKP 60
GIFIS ++ GG A+ +G L D++L VNG+ + S +Q + + +I KP
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVKP 60
GIFIS ++ GG A+ +G L D++L VNG+ + S +Q + + +I KP
Sbjct: 31 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 90
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
IFI++++ GG A G L VND +L VN D+ S + +K A
Sbjct: 33 IFITKIITGGAAAQDGRLRVNDCILRVN-----------EADVRDVTHSKAVEALKEAGS 81
Query: 64 RANMSVPRRGSY 75
+ V RR ++
Sbjct: 82 IVRLYVKRRKAF 93
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVKP 60
GIFIS ++ GG A+ +G L D++L VNG+ + S +Q + + +I KP
Sbjct: 36 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
Length = 91
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
+PG FI + GG A+ GL D ++EVNG+ V + ++V D + ++ N+ + V
Sbjct: 26 LPGSFIKEVQKGGPADLAGL-EDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
+PG FI + GG A+ GL D ++EVNG+ V + ++V D + ++ N+ + V
Sbjct: 26 LPGSFIKEVQKGGPADLAGL-EDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
+PG FI + GG A+ GL D ++EVNG+ V + ++V D + ++ N+ + V
Sbjct: 30 LPGSFIKEVQKGGPADLAGL-EDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 86
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
IFI++++ GG A G L VND +L VN + D+ S + +K A
Sbjct: 43 IFITKIITGGAAAQDGRLRVNDCILRVNEV-----------DVRDVTHSKAVEALKEAGS 91
Query: 64 RANMSVPRR 72
+ V RR
Sbjct: 92 IVRLYVKRR 100
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVK 59
P + IS L+ GG AE +GL+ D +L VN + S D +++ +A+ +++++ ++
Sbjct: 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 85
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVK 59
P + IS L+ GG AE +GL+ D +L VN + S D +++ +A+ +++++ ++
Sbjct: 28 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 87
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNG 32
+++ RL G AE +G + + DE+LE+NG
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEING 79
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVK 59
P + IS L+ GG AE +GL+ D +L VN + S D +++ +A+ +++++ ++
Sbjct: 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GI++ L+PG A G + ND++L V+ + V G + V +++
Sbjct: 45 GIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVL 89
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
GI+++R+ GG AE G L + D++++VNG + + DQ + S ++
Sbjct: 55 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 106
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
GI+++R+ GG AE G L + D++++VNG + + DQ + S ++
Sbjct: 54 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 105
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
GI+++R+ GG AE G L + D++++VNG + + DQ + S ++
Sbjct: 54 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 105
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
GI+++R+ GG AE G L + D++++VNG + + DQ + S ++
Sbjct: 44 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 95
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
GI+++R+ GG AE G L + D++++VNG + + DQ + S ++
Sbjct: 54 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 105
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
GI+++R+ GG AE G L + D++++VNG + + DQ + S ++
Sbjct: 65 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 116
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
GI+++R+ GG AE G L + D++++VNG + + DQ + S ++
Sbjct: 46 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 97
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVKP 60
GIF+S ++ GG A+ +G L D +L VNG+ + + +Q + S ++ +P
Sbjct: 40 GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP 99
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVKP 60
GIF+S ++ GG A+ +G L D +L VNG+ + + +Q + S ++ +P
Sbjct: 37 GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP 96
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLII 56
G++++ + P G+A G+LA +D ++EVNG V S ++V + + + S ++
Sbjct: 33 GVYMTDITPQGVAMRAGVLA-DDHLIEVNGENVEDASHEEVVEKVKKSGSRVMF 85
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GIFISR+ G A G+ V D++LEVNG+ + G + + +
Sbjct: 47 GIFISRVSEEGPAARAGVR-VGDKLLEVNGVALQGAEHHEAVEAL 90
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSL 40
+P + I+ ++ GG AE +G L + D+++ +NG + G L
Sbjct: 28 LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPL 67
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 1 VPG---IFISRLVPGGLAESTGLLAVNDEVLEVN 31
+PG I+I++++ GG A+ G L + D +L VN
Sbjct: 29 IPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSL 40
+P + I+ ++ GG AE +G L + D+++ +NG + G L
Sbjct: 28 LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPL 67
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GIFI +VP A G L V D +L +NG V + V D++
Sbjct: 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLI 82
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GIFISR+ G A G+ V D++LEVNG+ + G + + +
Sbjct: 35 GIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAEHHEAVEAL 78
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA--NSSNLIITVKP 60
G +I + PG AE GLLA D ++EVNG V ++ QV + A N+ L++ V P
Sbjct: 27 GQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV-VDP 84
Query: 61 AN 62
N
Sbjct: 85 EN 86
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 11 PGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVP 70
PGG AE G A D ++ V+G V G SL V+D++ + + + V + P
Sbjct: 108 PGGPAEKAGARA-GDVIVTVDGTAVKGXSLYDVSDLLQGEADSQVEVV--------LHAP 158
Query: 71 RRGSYSRTSQLS 82
S +RT QL+
Sbjct: 159 GAPSNTRTLQLT 170
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSL 40
+P + I+ ++ GG AE +G L + D+++ +NG + G L
Sbjct: 32 LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPL 71
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAG 37
GIF+ + GG A G + VND ++EV+G + G
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVG 146
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAG 37
GIF+ + GG A G + VND ++EV+G + G
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVG 146
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKS 39
IF+ + P G A + G + + DE+LE+N ++ G+S
Sbjct: 53 IFVVGINPEGPAAADGRMRIGDELLEINNQILYGRS 88
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGK 38
GI+IS + P +A G + D ++++NGI V +
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR 84
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA--NSSNLIIT 57
G +I + PG AE GLLA D ++EVNG V ++ QV + A N+ L++
Sbjct: 28 GQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVV 83
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSL 40
+P + ++ ++ GG A +G L++ D+++ +NG + G L
Sbjct: 215 LPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPL 254
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA--NSSNLIIT 57
G +I + PG AE GLLA D ++EVNG V ++ QV + A N+ L++
Sbjct: 28 GQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVV 83
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 11 PGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVP 70
PGG AE G A D ++ V+G V G SL V+D++ + + + V + P
Sbjct: 108 PGGPAEKAGARA-GDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVV--------LHAP 158
Query: 71 RRGSYSRTSQLS 82
S +RT QL+
Sbjct: 159 GAPSNTRTLQLT 170
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk
P55 Subfamily Member 2
Length = 91
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNG 32
+ I+R++ GG+ GLL V D + EVNG
Sbjct: 31 LVIARILHGGMVAQQGLLHVGDIIKEVNG 59
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA--NSSNLIIT 57
G +I + PG AE GLLA D ++EVNG V ++ QV + A N+ L++
Sbjct: 28 GQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVV 83
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAG 37
GIF+ + GG A G + VND ++EV+G + G
Sbjct: 36 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVG 70
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNG 32
I IS ++PGG A+ GLL ND V+ VNG
Sbjct: 48 IVISDVLPGGPAD--GLLQENDRVVMVNG 74
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGI 33
VP I IS + PG A+ G L V D +L VNG+
Sbjct: 53 VP-ILISEIHPGQPADRCGGLHVGDAILAVNGV 84
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 6 ISRLVPGGLAESTGLLAVNDEVLEVNG 32
ISRL PGG A G +AV D VL ++G
Sbjct: 31 ISRLTPGGKAAQAG-VAVGDWVLSIDG 56
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I IS++ PG A+ + L + D +L VNG + + DQ + +++ VK
Sbjct: 31 ILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVK 86
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGI 33
VP I IS + PG A+ G L V D +L VNG+
Sbjct: 35 VP-ILISEIHPGQPADRCGGLHVGDAILAVNGV 66
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGI 33
VP I IS + PG A+ G L V D +L VNG+
Sbjct: 28 VP-ILISEIHPGQPADRCGGLHVGDAILAVNGV 59
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
+ + P AE GLL V D VL +NGI ++++ ++
Sbjct: 48 LVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLL 90
>pdb|2YUB|A Chain A, Solution Structure Of The Pdz Domain From Mouse Lim Domain
Kinase
Length = 118
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 25 DEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANMSVPRRG 73
D +LE+NG V +++V D + S L+I P QR + S P G
Sbjct: 68 DRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRLDQSGPSSG 118
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQ 42
GIF+ + G +A G L D++L +N G++LDQ
Sbjct: 50 GIFVQEIQEGSVAHRDGRLKETDQILAIN-----GQALDQ 84
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
GIFIS++ P G A G L V +LEVN + G + + ++ + L + V
Sbjct: 45 GIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 9 LVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
+ PG LA ST + + + N V G DQ+ D + A + +LI
Sbjct: 74 IAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLI 120
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNG 32
GI++SR+ G A G L D++L VNG
Sbjct: 40 GIYVSRIKENGAAALDGRLQEGDKILSVNG 69
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR 64
IS + AE G+L + D V+ +NGI + ++ ++ +S +T++
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV 98
Query: 65 ANMSVPRRGSY 75
A +P G++
Sbjct: 99 AESVIPSSGTF 109
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNG 32
GI++SR+ G A G L D++L VNG
Sbjct: 38 GIYVSRIKENGAAALDGRLQEGDKILSVNG 67
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
+++ RL G A G + V D+++E+NG + DM A + LI K +
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEING--------ESTRDMTHARAIELI---KSGGR 86
Query: 64 RANMSVPR 71
R + + R
Sbjct: 87 RVRLLLKR 94
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNG 32
GI++SR+ G A G L D++L VNG
Sbjct: 48 GIYVSRIKENGAAALDGRLQEGDKILSVNG 77
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 IFISRLVPGGLAESTGLLAVNDEVLEVNG 32
I + R+ P GLA G + +EVL +NG
Sbjct: 44 ITVHRVFPNGLASQEGTIQKGNEVLSING 72
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGI 33
GIFIS ++ GG A+ +G L D ++ VN +
Sbjct: 32 GIFISFILAGGPADLSGELRKGDRIISVNSV 62
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
Length = 111
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
PG++I ++ A G +A DE+ VNG + GK+ +V M+
Sbjct: 31 PGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,792,809
Number of Sequences: 62578
Number of extensions: 244771
Number of successful extensions: 1057
Number of sequences better than 100.0: 155
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 160
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)