Query psy16075
Match_columns 241
No_of_seqs 214 out of 1196
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 20:14:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3606|consensus 99.7 1.3E-16 2.9E-21 146.5 8.9 109 1-111 193-301 (358)
2 KOG3606|consensus 99.5 1.2E-15 2.5E-20 140.3 1.5 73 117-205 69-147 (358)
3 KOG0609|consensus 99.2 2.2E-11 4.8E-16 119.5 6.9 122 3-158 147-273 (542)
4 PF00595 PDZ: PDZ domain (Also 99.2 1.3E-10 2.9E-15 85.3 8.2 57 2-59 25-81 (81)
5 PF13180 PDZ_2: PDZ domain; PD 98.9 8.1E-09 1.8E-13 76.4 8.4 65 2-69 14-80 (82)
6 cd00136 PDZ PDZ domain, also c 98.8 2.7E-08 5.8E-13 70.4 8.4 55 3-58 14-69 (70)
7 cd00992 PDZ_signaling PDZ doma 98.8 4.1E-08 8.9E-13 70.8 8.3 56 2-58 26-81 (82)
8 cd00991 PDZ_archaeal_metallopr 98.8 6E-08 1.3E-12 71.7 8.6 64 2-68 10-75 (79)
9 smart00228 PDZ Domain present 98.7 8.1E-08 1.8E-12 69.0 9.0 59 2-61 26-84 (85)
10 cd00988 PDZ_CTP_protease PDZ d 98.7 7.9E-08 1.7E-12 70.3 8.4 67 2-69 13-81 (85)
11 cd00987 PDZ_serine_protease PD 98.7 1.9E-07 4E-12 68.5 8.6 63 2-67 24-88 (90)
12 KOG3209|consensus 98.6 3.6E-08 7.8E-13 100.2 5.8 63 4-66 780-842 (984)
13 cd00989 PDZ_metalloprotease PD 98.6 3.5E-07 7.6E-12 65.8 8.5 62 3-67 13-75 (79)
14 KOG3550|consensus 98.6 1.5E-07 3.1E-12 81.5 6.7 59 3-61 116-174 (207)
15 cd00986 PDZ_LON_protease PDZ d 98.6 4.5E-07 9.7E-12 66.4 8.2 63 2-68 8-72 (79)
16 PLN00049 carboxyl-terminal pro 98.4 7.8E-07 1.7E-11 84.1 8.7 70 3-73 103-173 (389)
17 cd00990 PDZ_glycyl_aminopeptid 98.4 8.8E-07 1.9E-11 64.2 7.0 62 3-68 13-74 (80)
18 COG0793 Prc Periplasmic protea 98.3 1.8E-06 4E-11 82.7 7.6 71 2-73 112-185 (406)
19 KOG3549|consensus 98.2 2E-06 4.4E-11 82.3 6.2 57 3-59 81-137 (505)
20 TIGR00225 prc C-terminal pepti 98.2 4.9E-06 1.1E-10 76.7 8.1 69 3-72 63-134 (334)
21 PRK10139 serine endoprotease; 98.2 6.4E-06 1.4E-10 79.8 8.8 64 2-68 390-453 (455)
22 TIGR02037 degP_htrA_DO peripla 98.2 8E-06 1.7E-10 77.5 8.6 63 2-67 362-426 (428)
23 TIGR00054 RIP metalloprotease 98.1 8.4E-06 1.8E-10 77.9 8.4 65 3-70 204-269 (420)
24 TIGR02037 degP_htrA_DO peripla 98.1 8.4E-06 1.8E-10 77.3 8.1 65 2-69 257-323 (428)
25 PRK10139 serine endoprotease; 98.1 9.3E-06 2E-10 78.7 8.6 66 2-70 290-357 (455)
26 TIGR02038 protease_degS peripl 98.1 1E-05 2.2E-10 75.6 8.0 65 2-69 278-344 (351)
27 PRK10942 serine endoprotease; 98.1 1.2E-05 2.5E-10 78.3 8.7 64 2-68 408-471 (473)
28 KOG3209|consensus 98.1 4.8E-06 1E-10 85.2 6.0 57 3-60 924-980 (984)
29 KOG3553|consensus 98.1 3E-06 6.5E-11 69.0 3.7 58 2-61 59-116 (124)
30 TIGR01713 typeII_sec_gspC gene 98.1 1.3E-05 2.9E-10 72.6 8.2 64 2-68 191-256 (259)
31 PRK11186 carboxy-terminal prot 98.1 8.9E-06 1.9E-10 82.7 7.6 70 3-73 256-335 (667)
32 PRK10898 serine endoprotease; 98.0 1.8E-05 3.9E-10 74.2 8.5 65 2-69 279-345 (353)
33 PRK10779 zinc metallopeptidase 98.0 1.7E-05 3.6E-10 76.3 8.3 64 3-69 222-286 (449)
34 KOG3551|consensus 98.0 7.6E-06 1.7E-10 79.1 5.6 58 3-60 111-168 (506)
35 PRK10942 serine endoprotease; 98.0 2E-05 4.4E-10 76.7 8.6 66 2-70 311-378 (473)
36 PRK10779 zinc metallopeptidase 97.9 2.6E-05 5.6E-10 75.0 7.0 60 5-67 129-190 (449)
37 KOG3580|consensus 97.9 2.2E-05 4.7E-10 79.5 6.6 58 3-62 41-98 (1027)
38 KOG3605|consensus 97.9 1E-05 2.3E-10 82.0 4.0 66 2-67 673-740 (829)
39 KOG3580|consensus 97.7 4.7E-05 1E-09 77.2 5.8 65 3-67 220-284 (1027)
40 KOG1892|consensus 97.7 4.9E-05 1.1E-09 80.1 5.2 60 2-61 960-1019(1629)
41 KOG3651|consensus 97.7 0.00011 2.3E-09 69.7 6.8 58 1-58 29-86 (429)
42 TIGR00054 RIP metalloprotease 97.7 0.00012 2.6E-09 70.0 7.4 63 2-67 128-190 (420)
43 TIGR03279 cyano_FeS_chp putati 97.6 0.00011 2.5E-09 71.5 6.8 60 6-70 2-62 (433)
44 KOG3571|consensus 97.6 0.00012 2.5E-09 72.9 6.6 75 3-77 278-358 (626)
45 TIGR02860 spore_IV_B stage IV 97.5 0.00036 7.8E-09 67.5 8.6 55 12-69 123-178 (402)
46 KOG3552|consensus 97.4 0.00022 4.8E-09 75.0 5.3 56 3-60 76-131 (1298)
47 KOG3605|consensus 97.4 5.8E-05 1.3E-09 76.8 0.9 62 5-67 759-820 (829)
48 COG0265 DegQ Trypsin-like seri 97.2 0.0017 3.6E-08 59.9 8.1 64 2-68 270-335 (347)
49 KOG3129|consensus 97.1 0.002 4.4E-08 58.2 7.3 66 3-69 140-207 (231)
50 KOG3542|consensus 97.0 0.00064 1.4E-08 70.1 3.9 58 2-61 562-619 (1283)
51 PF14685 Tricorn_PDZ: Tricorn 96.9 0.0032 7E-08 49.1 6.6 58 3-62 13-80 (88)
52 PF04495 GRASP55_65: GRASP55/6 96.2 0.017 3.6E-07 48.3 6.9 56 3-61 44-101 (138)
53 PRK09681 putative type II secr 96.2 0.019 4.1E-07 53.4 7.8 61 5-68 207-272 (276)
54 KOG1738|consensus 95.9 0.016 3.4E-07 59.0 6.2 57 4-60 227-283 (638)
55 KOG1320|consensus 95.6 0.031 6.8E-07 55.4 7.0 63 3-68 399-463 (473)
56 KOG3938|consensus 95.4 0.018 3.9E-07 54.0 4.2 68 4-71 151-220 (334)
57 KOG0606|consensus 95.3 0.025 5.5E-07 60.9 5.3 53 5-58 661-713 (1205)
58 KOG1421|consensus 95.0 0.055 1.2E-06 56.2 6.5 61 4-68 305-366 (955)
59 COG3480 SdrC Predicted secrete 95.0 0.077 1.7E-06 50.6 7.0 55 2-60 130-186 (342)
60 cd06403 PB1_Par6 The PB1 domai 94.4 0.0041 8.9E-08 48.3 -2.3 31 116-162 50-80 (80)
61 KOG3532|consensus 94.3 0.11 2.4E-06 54.2 6.9 54 4-60 400-453 (1051)
62 COG3975 Predicted protease wit 93.8 0.1 2.2E-06 52.6 5.4 56 3-67 463-518 (558)
63 PF12812 PDZ_1: PDZ-like domai 93.0 0.33 7.3E-06 36.9 5.9 46 3-51 31-76 (78)
64 COG3031 PulC Type II secretory 92.9 0.26 5.7E-06 45.7 6.0 57 8-67 213-271 (275)
65 KOG4407|consensus 89.4 0.18 3.9E-06 55.6 1.6 60 1-61 142-201 (1973)
66 COG0750 Predicted membrane-ass 89.0 1.7 3.7E-05 40.1 7.5 52 6-60 133-188 (375)
67 KOG3834|consensus 85.8 1.3 2.8E-05 44.0 5.0 58 3-61 16-73 (462)
68 KOG4371|consensus 64.9 6 0.00013 43.4 3.3 41 21-61 1187-1227(1332)
69 KOG1421|consensus 59.7 22 0.00048 37.9 6.1 47 3-53 863-909 (955)
70 KOG4371|consensus 56.7 11 0.00024 41.5 3.5 59 2-60 1270-1328(1332)
71 KOG3834|consensus 43.4 34 0.00074 34.3 4.3 51 6-59 113-165 (462)
72 smart00285 PBD P21-Rho-binding 42.5 11 0.00024 24.6 0.6 14 195-208 1-14 (36)
73 KOG2921|consensus 40.3 40 0.00087 33.8 4.3 44 3-49 221-265 (484)
74 PF11874 DUF3394: Domain of un 33.5 60 0.0013 28.8 4.0 27 3-30 123-149 (183)
75 COG4100 Cystathionine beta-lya 30.3 50 0.0011 32.3 3.1 42 4-47 84-128 (416)
76 KOG4407|consensus 29.6 24 0.00051 40.1 0.9 57 3-61 97-153 (1973)
77 COG5233 GRH1 Peripheral Golgi 27.6 39 0.00086 33.0 1.9 30 6-36 67-96 (417)
78 cd01093 CRIB_PAK_like PAK (p21 26.6 50 0.0011 22.6 1.8 15 194-208 2-16 (46)
79 PF00786 PBD: P21-Rho-binding 22.7 29 0.00064 24.7 0.1 18 194-211 1-18 (59)
80 TIGR02563 cas_Csy4 CRISPR-asso 22.4 46 0.00099 29.3 1.2 38 194-232 146-183 (185)
No 1
>KOG3606|consensus
Probab=99.67 E-value=1.3e-16 Score=146.50 Aligned_cols=109 Identities=69% Similarity=0.962 Sum_probs=92.7
Q ss_pred CCcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccccccCCCCCCCCC
Q psy16075 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSYSRTSQ 80 (241)
Q Consensus 1 ~pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~~R~~~~~~~s~ 80 (241)
+|||||+++++||.|+..|||.++|+|++|||+.|.|++++|+.+||-+++.++.++|+|++|+.++. -.+++++.+.|
T Consensus 193 vpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQRnnvv-r~~~~~~~sg~ 271 (358)
T KOG3606|consen 193 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQRNNVV-RGRRSFGSSGQ 271 (358)
T ss_pred cCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEeccccccccee-ecccccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999864 34445667777
Q ss_pred CCCCCCCCCcCcccCCCCCCcchhhhhhccc
Q psy16075 81 LSSDSHQSTQSIATTNNSEDDEQDEVVDLTG 111 (241)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (241)
+|.++++--.+..+ ++.++||||.|.+++.
T Consensus 272 ~S~gp~~~~~~n~~-pe~e~~deD~iie~~~ 301 (358)
T KOG3606|consen 272 LSDGPSQQGTPNFS-PEIEDDDEDDIIELTG 301 (358)
T ss_pred CCCCCccCCCCCCC-ccccccccceeeeccC
Confidence 77776544444443 4567888888888887
No 2
>KOG3606|consensus
Probab=99.54 E-value=1.2e-15 Score=140.33 Aligned_cols=73 Identities=32% Similarity=0.435 Sum_probs=65.7
Q ss_pred ecccCCCCcccceeeeEEEEEeecccccchhcccccchhhhhhhhhhh---hhcccccC---CCccccccccCCCCCCCc
Q psy16075 117 CRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARESLE---ELSNYASS---RSKNIISTFLGGTPGKTK 190 (241)
Q Consensus 117 ~~~~p~t~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~e---e~~gygt~---~~k~~is~~l~~~~~k~~ 190 (241)
-|++|+||+++|-+..- + ++|||||++|+..| |.+||||+ |+|++|+++|...|+|++
T Consensus 69 gDLLPinNDDn~~ka~~-------s---------a~PlLR~~iQkr~ea~~~~~~fgt~sl~rr~~gl~~~lr~~~p~rr 132 (358)
T KOG3606|consen 69 GDLLPINNDDNLHKALS-------S---------ARPLLRLLIQKREEADEEKYGFGTDSLQRRKKGLSSLLRPKPPKRR 132 (358)
T ss_pred CceecccCchhHHHHhh-------c---------cCchhhhhhhhhhhhhhhccCcccccHHHHhHhhHhhhcCCCCccC
Confidence 79999999999999876 7 99999999998866 57899999 778899999999999876
Q ss_pred cceecCCCccccccc
Q psy16075 191 SHITISNPQDFRCGI 205 (241)
Q Consensus 191 ~~~~IS~P~dFRqv~ 205 (241)
.||+||+|||||||-
T Consensus 133 ~~~~Is~P~DFRqVS 147 (358)
T KOG3606|consen 133 PHLSISLPQDFRQVS 147 (358)
T ss_pred CCccccCccccceec
Confidence 699999999999983
No 3
>KOG0609|consensus
Probab=99.20 E-value=2.2e-11 Score=119.49 Aligned_cols=122 Identities=24% Similarity=0.385 Sum_probs=107.4
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccccccCCCCCCCCCCC
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSYSRTSQLS 82 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~~R~~~~~~~s~~~ 82 (241)
-++|++|+.||.|++.|+|++||+|++|||+++.+....+++.+++...|.++|+|.|... ..
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~--~~--------------- 209 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYR--PP--------------- 209 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccccc--CC---------------
Confidence 3899999999999999999999999999999999999999999999999999999998633 11
Q ss_pred CCCCCCCcCcccCCCCCCcchhhhhhcccccceeecccCC-CCcccceeeeEEEEEeecccccchhccccc----chhhh
Q psy16075 83 SDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPS-TNSDIFERTKIVFVFTMLSKTTKWMSDMNG----HALRI 157 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-t~s~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~lrl 157 (241)
+ ..+-..|++++.|...++++-|| ++-..|.+++|+=+....+ -||||+...+ .+-.|
T Consensus 210 ---------~-------~~~~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD-~nWWQA~~~~~~~~~~AGL 272 (542)
T KOG0609|consen 210 ---------P-------QQQVVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDD-PNWWQARRVGDPFGGLAGL 272 (542)
T ss_pred ---------C-------ceeeeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCC-cchhhhhcccCcccccccc
Confidence 0 01246789999999999999999 9999999999999999988 9999999886 55556
Q ss_pred h
Q psy16075 158 L 158 (241)
Q Consensus 158 ~ 158 (241)
+
T Consensus 273 i 273 (542)
T KOG0609|consen 273 I 273 (542)
T ss_pred c
Confidence 5
No 4
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.17 E-value=1.3e-10 Score=85.26 Aligned_cols=57 Identities=42% Similarity=0.712 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~ 59 (241)
.+++|..|.++++|+++| |++||+|++|||+++.++++++++++++...+.|+|+|.
T Consensus 25 ~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 489999999999999999 599999999999999999999999999988888888874
No 5
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.90 E-value=8.1e-09 Score=76.42 Aligned_cols=65 Identities=23% Similarity=0.449 Sum_probs=55.4
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCccccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMSV 69 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~~ 69 (241)
.|+.|..|.+++||+++|+ ++||+|++|||+++. +..++..++.... ..+.|+|.|.++..++.+
T Consensus 14 ~g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v 80 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAGL-QPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGEELTVEV 80 (82)
T ss_dssp SSEEEEEESTTSHHHHTTS--TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTEEEEEEE
T ss_pred CeEEEEEeCCCCcHHHCCC-CCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence 4899999999999999997 999999999999997 8999999995433 369999999988776643
No 6
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.82 E-value=2.7e-08 Score=70.35 Aligned_cols=55 Identities=31% Similarity=0.551 Sum_probs=49.7
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEE
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITV 58 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV 58 (241)
+++|..|.+++||+++|+ ++||+|++|||+++.+.+++++.++++...+ .+.|+|
T Consensus 14 ~~~V~~v~~~s~a~~~gl-~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 14 GVVVLSVEPGSPAERAGL-QAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CEEEEEeCCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 799999999999999997 9999999999999998888999999987663 577765
No 7
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.78 E-value=4.1e-08 Score=70.83 Aligned_cols=56 Identities=41% Similarity=0.741 Sum_probs=50.8
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV 58 (241)
.|++|..|.+++||+++|+ ++||+|++|||+++..++++++..+++...+.+.++|
T Consensus 26 ~~~~V~~v~~~s~a~~~gl-~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 26 GGIFVSRVEPGGPAERGGL-RVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCeEEEEECCCChHHhCCC-CCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 4799999999999999997 9999999999999999999999999987666666665
No 8
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.75 E-value=6e-08 Score=71.73 Aligned_cols=64 Identities=20% Similarity=0.398 Sum_probs=55.2
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMS 68 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~ 68 (241)
.|++|..|.+++||+++|+ +.||+|++|||+++. ++.++..++... +..+.+++.+.++...+.
T Consensus 10 ~Gv~V~~V~~~spa~~aGL-~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~ 75 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVL-HTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTTKLTNV 75 (79)
T ss_pred CcEEEEEECCCChHHhcCC-CCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCEEEEEE
Confidence 4899999999999999997 999999999999999 899999999764 346888888887665543
No 9
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.75 E-value=8.1e-08 Score=69.01 Aligned_cols=59 Identities=34% Similarity=0.536 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~ 61 (241)
.|++|..|.++++|+++|+ ++||+|++|||+++.++++.+...+++.....+.+.+.+.
T Consensus 26 ~~~~i~~v~~~s~a~~~gl-~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAGL-KVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 4899999999999999995 9999999999999999999999999987655778877664
No 10
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.72 E-value=7.9e-08 Score=70.31 Aligned_cols=67 Identities=22% Similarity=0.497 Sum_probs=55.2
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecC-Cccccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPA-NQRANMSV 69 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~-~q~~~~~~ 69 (241)
.+++|..|.+++||+++|+ ++||+|++|||+++...+++++..+++...+ .+.+++.+. ++..++.+
T Consensus 13 ~~~~V~~v~~~s~a~~~gl-~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~ 81 (85)
T cd00988 13 GGLVITSVLPGSPAAKAGI-KAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTL 81 (85)
T ss_pred CeEEEEEecCCCCHHHcCC-CCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEE
Confidence 3689999999999999997 9999999999999997667999999976443 578888877 65555443
No 11
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.65 E-value=1.9e-07 Score=68.51 Aligned_cols=63 Identities=24% Similarity=0.413 Sum_probs=53.4
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANM 67 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~ 67 (241)
.|++|..|.+++||+++|+ +.||+|++|||+++. ++.++.+++... ...+.+++.+.++...+
T Consensus 24 ~g~~V~~v~~~s~a~~~gl-~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~~ 88 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGL-KPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGGKELTV 88 (90)
T ss_pred CEEEEEEECCCCHHHHcCC-CcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEe
Confidence 3899999999999999997 999999999999998 788888888765 34688888887765443
No 12
>KOG3209|consensus
Probab=98.63 E-value=3.6e-08 Score=100.20 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=57.6
Q ss_pred EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccc
Q psy16075 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRAN 66 (241)
Q Consensus 4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~ 66 (241)
--|.+|++|+||+|+|.|++||+|++|||++|.+++|.+++++||.++-.|+|+|.+..+-..
T Consensus 780 sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~ 842 (984)
T KOG3209|consen 780 SGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGP 842 (984)
T ss_pred CCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCC
Confidence 348899999999999999999999999999999999999999999999899999998765443
No 13
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.59 E-value=3.5e-07 Score=65.84 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CcEEEEEecCCccccc
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS-SNLIITVKPANQRANM 67 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss-g~VtLtV~p~~q~~~~ 67 (241)
.++|..|.++++|+++|+ ++||+|++|||+++. +++++..+++... ..+.+++.+.++...+
T Consensus 13 ~~~V~~v~~~s~a~~~gl-~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~ 75 (79)
T cd00989 13 EPVIGEVVPGSPAAKAGL-KAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGETITL 75 (79)
T ss_pred CcEEEeECCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECCEEEEE
Confidence 378999999999999997 999999999999998 8899999997653 3678888887655444
No 14
>KOG3550|consensus
Probab=98.56 E-value=1.5e-07 Score=81.53 Aligned_cols=59 Identities=32% Similarity=0.630 Sum_probs=55.1
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~ 61 (241)
.|+|++|+|||.|++-|-|+.||.+++|||++|.+-.|+.++++||++.+.|.|.|..-
T Consensus 116 piyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvryt 174 (207)
T KOG3550|consen 116 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRYT 174 (207)
T ss_pred ceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEecC
Confidence 59999999999999998789999999999999999999999999999999999888643
No 15
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.55 E-value=4.5e-07 Score=66.35 Aligned_cols=63 Identities=17% Similarity=0.365 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMS 68 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~ 68 (241)
.|++|..|.+++||+. |+ ++||+|++|||+++. +++++..++... +..+.+++.+.++..++.
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL-~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~ 72 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KL-KAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEKELPED 72 (79)
T ss_pred cCEEEEEECCCCchhh-CC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEE
Confidence 4899999999999997 75 999999999999998 899999999753 336888888887765543
No 16
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.43 E-value=7.8e-07 Score=84.13 Aligned_cols=70 Identities=21% Similarity=0.415 Sum_probs=61.2
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccccccCC
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSVPRRG 73 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~~R~~ 73 (241)
|++|..|.+++||+++|+ +.||+|++|||++|.++++.++..+++...+ .+.|+|.+.++..++.+.|..
T Consensus 103 g~~V~~V~~~SPA~~aGl-~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r~~ 173 (389)
T PLN00049 103 GLVVVAPAPGGPAARAGI-RPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTREK 173 (389)
T ss_pred cEEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEeee
Confidence 789999999999999997 9999999999999998888999999976554 688999988887777777653
No 17
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.43 E-value=8.8e-07 Score=64.22 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS 68 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~ 68 (241)
|+.|..|.++++|+++|+ ++||+|++|||+++. ++.++...++ .+..+.+++.+.++...+.
T Consensus 13 ~~~V~~V~~~s~a~~aGl-~~GD~I~~Ing~~v~--~~~~~l~~~~-~~~~v~l~v~r~g~~~~~~ 74 (80)
T cd00990 13 LGKVTFVRDDSPADKAGL-VAGDELVAVNGWRVD--ALQDRLKEYQ-AGDPVELTVFRDDRLIEVP 74 (80)
T ss_pred cEEEEEECCCChHHHhCC-CCCCEEEEECCEEhH--HHHHHHHhcC-CCCEEEEEEEECCEEEEEE
Confidence 589999999999999997 999999999999998 3555444332 3346888888877665553
No 18
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=1.8e-06 Score=82.70 Aligned_cols=71 Identities=20% Similarity=0.403 Sum_probs=60.8
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecC--CcccccccccCC
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPA--NQRANMSVPRRG 73 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~--~q~~~~~~~R~~ 73 (241)
.++.|.++++++||+++|+ ++||.|+.|||.++.++..+++++.|++..| .|+|++.|. ++...+++.|-.
T Consensus 112 ~~~~V~s~~~~~PA~kagi-~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~Re~ 185 (406)
T COG0793 112 GGVKVVSPIDGSPAAKAGI-KPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLTREE 185 (406)
T ss_pred CCcEEEecCCCChHHHcCC-CCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEEEEE
Confidence 3688999999999999995 9999999999999999999999999998877 599999986 445666655543
No 19
>KOG3549|consensus
Probab=98.22 E-value=2e-06 Score=82.31 Aligned_cols=57 Identities=32% Similarity=0.497 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~ 59 (241)
.++|++|.+.-.|+..|+|.+||.|++|||+.|..++|+|++++|+.++..|+|+|.
T Consensus 81 PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~ 137 (505)
T KOG3549|consen 81 PVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK 137 (505)
T ss_pred cEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence 589999999999999999999999999999999999999999999988889999884
No 20
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.20 E-value=4.9e-06 Score=76.67 Aligned_cols=69 Identities=25% Similarity=0.427 Sum_probs=55.4
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcc--cccccccC
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQR--ANMSVPRR 72 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~--~~~~~~R~ 72 (241)
+++|..|.+++||+++|+ ++||+|++|||+++.+.+..++..+++...+ .+.++|.+.++. .++++.|.
T Consensus 63 ~~~V~~V~~~spA~~aGL-~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 134 (334)
T TIGR00225 63 EIVIVSPFEGSPAEKAGI-KPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFTLKRD 134 (334)
T ss_pred EEEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEEEEEE
Confidence 588999999999999997 9999999999999997777888888865444 688899887643 33444443
No 21
>PRK10139 serine endoprotease; Provisional
Probab=98.18 E-value=6.4e-06 Score=79.77 Aligned_cols=64 Identities=23% Similarity=0.369 Sum_probs=56.6
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS 68 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~ 68 (241)
.|++|..|.+++||+++|+ +.||+|++|||+++. +++++.++++.....+.|+|.+.++...+.
T Consensus 390 ~Gv~V~~V~~~spA~~aGL-~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~~~~ 453 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGL-QKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNESIYLL 453 (455)
T ss_pred CceEEEEeCCCChHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEEEEEE
Confidence 3789999999999999998 999999999999998 899999999876667889999988765543
No 22
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.15 E-value=8e-06 Score=77.50 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANM 67 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~ 67 (241)
.|++|..|.+++||+++|+ ++||.|++|||+++. +++++.++++.. +..+.|+|.+.++...+
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL-~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~ 426 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGL-QPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGATIFV 426 (428)
T ss_pred CceEEEEeCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence 4799999999999999997 999999999999998 899999999864 34689999998876554
No 23
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.13 E-value=8.4e-06 Score=77.91 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccccc
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSVP 70 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~~ 70 (241)
++.|..|.+++||+++|+ ++||+|++|||+++. +++|+.+.++...+ .+.++|.|+++...+.+.
T Consensus 204 g~vV~~V~~~SpA~~aGL-~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~ 269 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAGL-KEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGETLSISLT 269 (420)
T ss_pred CcEEEEECCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCEEEEEEEE
Confidence 578999999999999997 999999999999998 89999999987544 588999998887666543
No 24
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.12 E-value=8.4e-06 Score=77.35 Aligned_cols=65 Identities=22% Similarity=0.440 Sum_probs=55.7
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV 69 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~ 69 (241)
.|++|..|.+++||+++|+ +.||+|++|||+++. ++.++..++... +..+.++|.+.++..++.+
T Consensus 257 ~Gv~V~~V~~~spA~~aGL-~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v 323 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGL-KAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKGKEKTITV 323 (428)
T ss_pred CceEEEEccCCCChHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 4899999999999999997 999999999999998 888888888653 3468999999887766543
No 25
>PRK10139 serine endoprotease; Provisional
Probab=98.12 E-value=9.3e-06 Score=78.65 Aligned_cols=66 Identities=15% Similarity=0.340 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSVP 70 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~~ 70 (241)
.|++|..|.+++||+++|+ +.||+|++|||+++. +++++...+... +..+.++|.+.+++.++.+.
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL-~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~ 357 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGV-KAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVT 357 (455)
T ss_pred CceEEEEECCCChHHHCCC-CCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence 4899999999999999998 999999999999999 899999988652 34688999998887776554
No 26
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.10 E-value=1e-05 Score=75.61 Aligned_cols=65 Identities=26% Similarity=0.460 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV 69 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~ 69 (241)
.|++|..|.+++||+++|+ ++||+|++|||+++. +++++.++++.. +..+.++|.+.++...+.+
T Consensus 278 ~Gv~V~~V~~~spA~~aGL-~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v 344 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGI-LVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGKQLELPV 344 (351)
T ss_pred ccceEeecCCCChHHHCCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 3899999999999999997 999999999999998 899999988753 3468899998887666544
No 27
>PRK10942 serine endoprotease; Provisional
Probab=98.10 E-value=1.2e-05 Score=78.34 Aligned_cols=64 Identities=17% Similarity=0.354 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS 68 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~ 68 (241)
.|++|..|.++++|+++|+ ++||+|++|||++|. +++++.++++.....+.|+|.+.++...+.
T Consensus 408 ~gvvV~~V~~~S~A~~aGL-~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~~~~v~ 471 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGL-KKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDSSIYLL 471 (473)
T ss_pred CCeEEEEeCCCChHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEEEEEE
Confidence 3789999999999999997 999999999999999 899999999876667889999988765543
No 28
>KOG3209|consensus
Probab=98.09 E-value=4.8e-06 Score=85.16 Aligned_cols=57 Identities=23% Similarity=0.430 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p 60 (241)
++||.++.++|||.+.|.+++||+|++|||++..+|+|+.+..+|| +++...+++++
T Consensus 924 ~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk-~gg~~vll~Lr 980 (984)
T KOG3209|consen 924 DLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIK-QGGRRVLLLLR 980 (984)
T ss_pred ceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHH-hCCeEEEEEec
Confidence 5899999999999999999999999999999999999999999998 55555444443
No 29
>KOG3553|consensus
Probab=98.09 E-value=3e-06 Score=69.00 Aligned_cols=58 Identities=29% Similarity=0.447 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~ 61 (241)
.||+|.+|.+||||+.+|| +.+|.|++|||-++.-++|++++..|+. +..+.++|.+.
T Consensus 59 ~GiYvT~V~eGsPA~~AGL-rihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~ 116 (124)
T KOG3553|consen 59 KGIYVTRVSEGSPAEIAGL-RIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQ 116 (124)
T ss_pred ccEEEEEeccCChhhhhcc-eecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhh
Confidence 3899999999999999998 9999999999999998899999999975 33455555553
No 30
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.08 E-value=1.3e-05 Score=72.64 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMS 68 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~ 68 (241)
.|+.|..+.++++|+++|+ +.||+|++|||+++. +++++.+++.... ..+.++|.++++...+.
T Consensus 191 ~G~~v~~v~~~s~a~~aGL-r~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i~ 256 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGL-QDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQREDIY 256 (259)
T ss_pred eEEEEEecCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCEEEEEE
Confidence 4889999999999999998 999999999999999 8999999997643 36899999998876553
No 31
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.07 E-value=8.9e-06 Score=82.67 Aligned_cols=70 Identities=27% Similarity=0.442 Sum_probs=57.1
Q ss_pred cEEEEEEcCCCHHhhh-CCCCCCCEEEEEC--C---EEcCCCCHHHHHHHHHhCCC-cEEEEEecC---CcccccccccC
Q psy16075 3 GIFISRLVPGGLAEST-GLLAVNDEVLEVN--G---ILVAGKSLDQVTDMMVANSS-NLIITVKPA---NQRANMSVPRR 72 (241)
Q Consensus 3 GIfIs~VvpGSpAerA-GLLqvGD~ILeIN--G---qsV~glshdeVv~LLKsssg-~VtLtV~p~---~q~~~~~~~R~ 72 (241)
+++|..|++||||+++ |+ ++||+|++|| | +++.++..++++++|++..| .|.|+|.+. ++...+++.|.
T Consensus 256 ~~~V~~vipGsPA~ka~gL-k~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R~ 334 (667)
T PRK11186 256 YTVINSLVAGGPAAKSKKL-SVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTRD 334 (667)
T ss_pred eEEEEEccCCChHHHhCCC-CCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEee
Confidence 4789999999999998 76 9999999999 4 46668899999999998777 588999863 34566666665
Q ss_pred C
Q psy16075 73 G 73 (241)
Q Consensus 73 ~ 73 (241)
.
T Consensus 335 ~ 335 (667)
T PRK11186 335 K 335 (667)
T ss_pred e
Confidence 4
No 32
>PRK10898 serine endoprotease; Provisional
Probab=98.04 E-value=1.8e-05 Score=74.18 Aligned_cols=65 Identities=25% Similarity=0.380 Sum_probs=55.1
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV 69 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~ 69 (241)
.|++|..|.+++||+++|+ +.||+|++|||+++. ++.++.+.+... +..+.++|.+.++...+.+
T Consensus 279 ~Gv~V~~V~~~spA~~aGL-~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v 345 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGI-QVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQLTLQV 345 (353)
T ss_pred CeEEEEEECCCChHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 4899999999999999998 999999999999998 788888888652 3368899998887766644
No 33
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.03 E-value=1.7e-05 Score=76.29 Aligned_cols=64 Identities=14% Similarity=0.341 Sum_probs=55.3
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCccccccc
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSV 69 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~ 69 (241)
+.+|..|.+++||+++|+ ++||+|++|||+++. +++|+.+.++...+ .+.++|.+.++...+.+
T Consensus 222 ~~vV~~V~~~SpA~~AGL-~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v 286 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGL-QAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGSPLSLTL 286 (449)
T ss_pred CcEEEeeCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCEEEEEEE
Confidence 368999999999999998 999999999999998 89999999977544 68899999887666544
No 34
>KOG3551|consensus
Probab=98.02 E-value=7.6e-06 Score=79.14 Aligned_cols=58 Identities=28% Similarity=0.417 Sum_probs=53.1
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p 60 (241)
.|.|+.|.+|-.|++++-|.+||.|++|||.++...+|+|+++.||.++..|.+.|+-
T Consensus 111 PIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy 168 (506)
T KOG3551|consen 111 PILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKY 168 (506)
T ss_pred ceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeee
Confidence 4899999999999999988999999999999999999999999999888877776653
No 35
>PRK10942 serine endoprotease; Provisional
Probab=98.01 E-value=2e-05 Score=76.68 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=56.8
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcccccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMSVP 70 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~~~ 70 (241)
.|++|..|.+++||+++|+ +.||+|++|||++|. +++++...+.... ..+.++|.+.++...+.+.
T Consensus 311 ~GvlV~~V~~~SpA~~AGL-~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~ 378 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGI-KAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVE 378 (473)
T ss_pred CceEEEEECCCChHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEE
Confidence 3899999999999999997 999999999999999 8999998886543 3688999998887766543
No 36
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.90 E-value=2.6e-05 Score=74.99 Aligned_cols=60 Identities=23% Similarity=0.352 Sum_probs=50.9
Q ss_pred EEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCCccccc
Q psy16075 5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANM 67 (241)
Q Consensus 5 fIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~q~~~~ 67 (241)
+|..|.++|||+++|+ +.||+|++|||+++. +++++...+....+ .+.++|.|.+++.+.
T Consensus 129 lV~~V~~~SpA~kAGL-k~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~ 190 (449)
T PRK10779 129 VVGEIAPNSIAAQAQI-APGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGSDQRR 190 (449)
T ss_pred cccccCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCccceE
Confidence 5889999999999998 999999999999999 88888877754433 689999998875544
No 37
>KOG3580|consensus
Probab=97.90 E-value=2.2e-05 Score=79.55 Aligned_cols=58 Identities=36% Similarity=0.471 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~ 62 (241)
.|+|+.|++||||+ |+|+.||+|+-|||+++.+..|.-++++|+.++....|+|++..
T Consensus 41 SiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 41 SIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred eEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 58999999999998 77899999999999999999999999999977777788888753
No 38
>KOG3605|consensus
Probab=97.87 E-value=1e-05 Score=82.02 Aligned_cols=66 Identities=18% Similarity=0.436 Sum_probs=56.7
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCCccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANM 67 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~q~~~~ 67 (241)
|.++|+.++++|||+++|.|-.||+|++|||.++.|+.+..++.+||+.+. .|+|+|++.--..++
T Consensus 673 PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V 740 (829)
T KOG3605|consen 673 PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTV 740 (829)
T ss_pred hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceEE
Confidence 567889999999999999999999999999999999999999999998765 477877765444444
No 39
>KOG3580|consensus
Probab=97.72 E-value=4.7e-05 Score=77.23 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM 67 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~ 67 (241)
.|||..+...|.|++.|-|+.||.||.|||+...+|++.++..+|..+.|++.|+|++..+..-+
T Consensus 220 qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLi 284 (1027)
T KOG3580|consen 220 QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLI 284 (1027)
T ss_pred hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCceee
Confidence 48999999999999999889999999999999999999999999999999999999877554433
No 40
>KOG1892|consensus
Probab=97.67 E-value=4.9e-05 Score=80.05 Aligned_cols=60 Identities=27% Similarity=0.493 Sum_probs=56.3
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~ 61 (241)
.||+|.+|++|++|+..|.|+.||.+|.|||+++.|.+.+.+..+|...+..|+|.|...
T Consensus 960 lGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKq 1019 (1629)
T KOG1892|consen 960 LGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQ 1019 (1629)
T ss_pred cceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhh
Confidence 599999999999999999999999999999999999999999999988888899999644
No 41
>KOG3651|consensus
Probab=97.66 E-value=0.00011 Score=69.73 Aligned_cols=58 Identities=28% Similarity=0.443 Sum_probs=54.5
Q ss_pred CCcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Q psy16075 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58 (241)
Q Consensus 1 ~pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV 58 (241)
||-++|.+|..++||++.|.++.||+|+.|||++|.|.+-.++.++|+...+.|.+.+
T Consensus 29 CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ihy 86 (429)
T KOG3651|consen 29 CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHY 86 (429)
T ss_pred CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEe
Confidence 5789999999999999999999999999999999999999999999998888888865
No 42
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.66 E-value=0.00012 Score=70.03 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM 67 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~ 67 (241)
.|.+|..|.+++||+++|+ +.||+|++|||+++. ++.++.+.+....+.+.+.+.+.++...+
T Consensus 128 ~g~~V~~V~~~SpA~~AGL-~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~v~~~I~r~g~~~~l 190 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGI-EPGDEILSVNGNKIP--GFKDVRQQIADIAGEPMVEILAERENWTF 190 (420)
T ss_pred CCceeeccCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhhcccceEEEEEecCceEe
Confidence 4678999999999999998 999999999999999 88898888866667788888876655443
No 43
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.63 E-value=0.00011 Score=71.53 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=49.0
Q ss_pred EEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe-cCCcccccccc
Q psy16075 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK-PANQRANMSVP 70 (241)
Q Consensus 6 Is~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~-p~~q~~~~~~~ 70 (241)
|..|.++|+|+++|+ ++||+|++|||+++. ++.++...+. ...+.++|. +.++...+.+.
T Consensus 2 I~~V~pgSpAe~AGL-e~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~~rdGe~~~l~Ie 62 (433)
T TIGR03279 2 ISAVLPGSIAEELGF-EPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVLDANGESHQIEIE 62 (433)
T ss_pred cCCcCCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEEcCCCeEEEEEEe
Confidence 678999999999998 999999999999998 8999887774 346888886 56665555443
No 44
>KOG3571|consensus
Probab=97.61 E-value=0.00012 Score=72.90 Aligned_cols=75 Identities=23% Similarity=0.411 Sum_probs=63.4
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC---CcEEEEEecC---CcccccccccCCCCC
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS---SNLIITVKPA---NQRANMSVPRRGSYS 76 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss---g~VtLtV~p~---~q~~~~~~~R~~~~~ 76 (241)
||||+.|++||+.+..|.+.+||-||+||.++..+++-+|++..|++.- +.++|+|... +...-+++||.-++-
T Consensus 278 gIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP~~q~~fTipr~epvr 357 (626)
T KOG3571|consen 278 GIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDPNPQSYFTIPRGEPVR 357 (626)
T ss_pred ceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCCCCcccccCCCCCcCC
Confidence 7999999999999999999999999999999999999999999998853 4688888633 456667788875444
Q ss_pred C
Q psy16075 77 R 77 (241)
Q Consensus 77 ~ 77 (241)
+
T Consensus 358 P 358 (626)
T KOG3571|consen 358 P 358 (626)
T ss_pred c
Confidence 3
No 45
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.53 E-value=0.00036 Score=67.54 Aligned_cols=55 Identities=16% Similarity=0.430 Sum_probs=47.9
Q ss_pred CCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCccccccc
Q psy16075 12 GGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSV 69 (241)
Q Consensus 12 GSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~ 69 (241)
++||+++|+ ++||.|++|||+++. +++++.++++...+ .+.++|.|.++...+.+
T Consensus 123 ~SPAa~AGL-q~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V 178 (402)
T TIGR02860 123 HSPGEEAGI-QIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGGKIIETVI 178 (402)
T ss_pred CCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECCEEEEEEE
Confidence 689999997 999999999999999 89999999987665 58899999887766654
No 46
>KOG3552|consensus
Probab=97.37 E-value=0.00022 Score=74.97 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=51.7
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p 60 (241)
.++|..|.+|||++ |.|++||+|+.|||.+|....++.|++++++.+..|.|+|+.
T Consensus 76 PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~q 131 (1298)
T KOG3552|consen 76 PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQ 131 (1298)
T ss_pred ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEec
Confidence 47899999999998 667999999999999999999999999999999999998875
No 47
>KOG3605|consensus
Probab=97.36 E-value=5.8e-05 Score=76.78 Aligned_cols=62 Identities=23% Similarity=0.450 Sum_probs=55.0
Q ss_pred EEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075 5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM 67 (241)
Q Consensus 5 fIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~ 67 (241)
+|-+++.||-|+|.|+ ++|.+|++|||++|....|+.++++|..+-|.|+++-.|....+-+
T Consensus 759 iICSLlRGGIAERGGV-RVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKTMPasMfRLL 820 (829)
T KOG3605|consen 759 IICSLLRGGIAERGGV-RVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKTMPAAMFRLL 820 (829)
T ss_pred EeehhhcccchhccCc-eeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhcchHHHHHHh
Confidence 5778999999999998 9999999999999999999999999998888999988887554433
No 48
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0017 Score=59.90 Aligned_cols=64 Identities=22% Similarity=0.415 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-C-cEEEEEecCCcccccc
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS-S-NLIITVKPANQRANMS 68 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss-g-~VtLtV~p~~q~~~~~ 68 (241)
.|++|..+.+++||+++|+ +.||.|+++||+++. +..+....+.... + .+.+.+.+.++..+++
T Consensus 270 ~G~~V~~v~~~spa~~agi-~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~ 335 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAGI-KAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGKERELA 335 (347)
T ss_pred CceEEEecCCCChHHHcCC-CCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCEEEEEE
Confidence 4789999999999999998 899999999999999 8888888886655 3 5888888887776664
No 49
>KOG3129|consensus
Probab=97.05 E-value=0.002 Score=58.16 Aligned_cols=66 Identities=24% Similarity=0.413 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCC-CHHHHHHHHHhCCC-cEEEEEecCCccccccc
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGK-SLDQVTDMMVANSS-NLIITVKPANQRANMSV 69 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~gl-shdeVv~LLKsssg-~VtLtV~p~~q~~~~~~ 69 (241)
-++|..|.++|||+++|+ ++||.|+.+.++.-.+. .+.++....+.+.+ .+.++|.+.++.-.+.+
T Consensus 140 Fa~V~sV~~~SPA~~aGl-~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~l 207 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGL-CVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSL 207 (231)
T ss_pred eEEEeecCCCChhhhhCc-ccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEe
Confidence 478999999999999998 99999999988766543 47777777776665 58899998887655543
No 50
>KOG3542|consensus
Probab=96.98 E-value=0.00064 Score=70.11 Aligned_cols=58 Identities=33% Similarity=0.548 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~ 61 (241)
.||||..|.||+.|++.|+ +.||+|++|||+...+.+...+.++|++ .-.+.|+|+-+
T Consensus 562 fgifV~~V~pgskAa~~Gl-KRgDqilEVNgQnfenis~~KA~eiLrn-nthLtltvKtN 619 (1283)
T KOG3542|consen 562 FGIFVAEVFPGSKAAREGL-KRGDQILEVNGQNFENISAKKAEEILRN-NTHLTLTVKTN 619 (1283)
T ss_pred ceeEEeeecCCchHHHhhh-hhhhhhhhccccchhhhhHHHHHHHhcC-CceEEEEEecc
Confidence 3899999999999999998 9999999999999999999999999974 44566666543
No 51
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.93 E-value=0.0032 Score=49.13 Aligned_cols=58 Identities=22% Similarity=0.396 Sum_probs=39.7
Q ss_pred cEEEEEEcCC--------CHHhhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCC
Q psy16075 3 GIFISRLVPG--------GLAESTGL-LAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPAN 62 (241)
Q Consensus 3 GIfIs~VvpG--------SpAerAGL-LqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~ 62 (241)
+..|.+|.+| ||..+.|+ +++||.|++|||+++. .-.+...+|....+ .|.|+|.+..
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-ST
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCC
Confidence 4568888886 77777774 4799999999999998 56678888887776 5888988654
No 52
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.23 E-value=0.017 Score=48.35 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=42.9
Q ss_pred cEEEEEEcCCCHHhhhCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecC
Q psy16075 3 GIFISRLVPGGLAESTGLLAV-NDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPA 61 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqv-GD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~ 61 (241)
+.-|.+|.|+|||++||| ++ .|.|+.+++..+. ..+++.++++...+ .+.|.|-..
T Consensus 44 ~~~Vl~V~p~SPA~~AGL-~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 44 GWHVLRVAPNSPAAKAGL-EPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNS 101 (138)
T ss_dssp EEEEEEE-TTSHHHHTT---TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEET
T ss_pred eEEEeEecCCCHHHHCCc-cccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEEC
Confidence 567899999999999998 66 7999999998888 67899999988776 588888643
No 53
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.21 E-value=0.019 Score=53.36 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=47.6
Q ss_pred EEEEEcCCCHH---hhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcccccc
Q psy16075 5 FISRLVPGGLA---ESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMS 68 (241)
Q Consensus 5 fIs~VvpGSpA---erAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~ 68 (241)
.=-+|.||..+ .++|+ +.||.+++|||+++. ..+++.++++.-. ..+.|+|.|.++..++.
T Consensus 207 ~GYrl~Pgkd~~lF~~~GL-q~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~ 272 (276)
T PRK09681 207 VGYAVKPGADRSLFDASGF-KEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGARHDIS 272 (276)
T ss_pred eEEEECCCCcHHHHHHcCC-CCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCEEEEEE
Confidence 34467777554 37787 999999999999998 7787777776544 36999999999876653
No 54
>KOG1738|consensus
Probab=95.91 E-value=0.016 Score=59.05 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=50.9
Q ss_pred EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60 (241)
Q Consensus 4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p 60 (241)
.+|+.+.+++||++.+.+..||+|+.||++-|.|..+.-+++-++.....|.++|+.
T Consensus 227 h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK 283 (638)
T KOG1738|consen 227 HVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK 283 (638)
T ss_pred eeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence 568889999999999988999999999999999999999999998777778777763
No 55
>KOG1320|consensus
Probab=95.63 E-value=0.031 Score=55.39 Aligned_cols=63 Identities=22% Similarity=0.451 Sum_probs=53.1
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCCcccccc
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANMS 68 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~q~~~~~ 68 (241)
+++|+.|.++++++..++ +.||.|+.|||++|. ...++..++..... .|.++..+..+..++.
T Consensus 399 ~v~is~Vlp~~~~~~~~~-~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~ 463 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGL-KPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVLDRRSAEDATLE 463 (473)
T ss_pred EEEEEEeccCCCcccccc-cCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEEEecCccceeEE
Confidence 688999999999999987 999999999999999 67888899977664 6777777777766553
No 56
>KOG3938|consensus
Probab=95.42 E-value=0.018 Score=54.01 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=53.8
Q ss_pred EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCCccccccccc
Q psy16075 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANMSVPR 71 (241)
Q Consensus 4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~q~~~~~~~R 71 (241)
.||.+|.+||.-++--.+++||.|=+|||++|.|+.|.||..+||.... ..++.+...........+|
T Consensus 151 AFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLiePk~af~~~~~r 220 (334)
T KOG3938|consen 151 AFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEPKSAFDGIGQR 220 (334)
T ss_pred eeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeeccccccCccccc
Confidence 6899999999999887779999999999999999999999999998654 3455554334444444433
No 57
>KOG0606|consensus
Probab=95.29 E-value=0.025 Score=60.86 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=47.4
Q ss_pred EEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Q psy16075 5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58 (241)
Q Consensus 5 fIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV 58 (241)
.+..|.+|+||..+|+ ..+|.|..|||++|.++.|.|+++++-+.+.++.+.+
T Consensus 661 ~v~sv~egsPA~~agl-s~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~t 713 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAGL-SAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRT 713 (1205)
T ss_pred eeeeecCCCCccccCC-CccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEe
Confidence 5778999999999998 9999999999999999999999999976666666655
No 58
>KOG1421|consensus
Probab=94.98 E-value=0.055 Score=56.25 Aligned_cols=61 Identities=21% Similarity=0.418 Sum_probs=52.1
Q ss_pred EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccc
Q psy16075 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMS 68 (241)
Q Consensus 4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~ 68 (241)
+++..|.++|||++. |++||.++.||+..+. ...++-+++.+..| .+.|+|.+.++..++.
T Consensus 305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqelel~ 366 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQELELT 366 (955)
T ss_pred EEEEEeccCCchhhc--cCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEEEEEE
Confidence 568899999999984 6999999999998888 78888888876665 6899999998876664
No 59
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.96 E-value=0.077 Score=50.65 Aligned_cols=55 Identities=18% Similarity=0.398 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEec
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKP 60 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p 60 (241)
.|+++..+..++++. |.|+.||.|++|||+++. +.+|+.+.+++.+. .|++.+.+
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r 186 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYER 186 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEe
Confidence 388999999999986 567999999999999999 99999999976553 68888875
No 60
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=94.42 E-value=0.0041 Score=48.27 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=27.0
Q ss_pred eecccCCCCcccceeeeEEEEEeecccccchhcccccchhhhhhhhh
Q psy16075 116 ICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARES 162 (241)
Q Consensus 116 ~~~~~p~t~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lrl~~~~~ 162 (241)
--|++|+||+++|.++.- + +.|+|||++|+.
T Consensus 50 ~gDLLPInNDdNf~kAls-------s---------a~plLRl~iqrk 80 (80)
T cd06403 50 HGDLLPINNDDNFLKALS-------S---------ANPLLRIFIQRR 80 (80)
T ss_pred CCCEecccCcHHHHHHHH-------c---------CCCceEEEEEcC
Confidence 368999999999999865 5 899999999874
No 61
>KOG3532|consensus
Probab=94.34 E-value=0.11 Score=54.17 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=47.6
Q ss_pred EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075 4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60 (241)
Q Consensus 4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p 60 (241)
+-|-.|.++++|.++.+ ++||++++|||++|. +..++...++...+.|..++.+
T Consensus 400 v~v~tv~~ns~a~k~~~-~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 400 VKVCTVEDNSLADKAAF-KPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred EEEEEecCCChhhHhcC-CCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 45788999999999997 899999999999999 9999999999888887765543
No 62
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=93.78 E-value=0.1 Score=52.56 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=38.9
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM 67 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~ 67 (241)
+..|..|.++|||++||+ .+||+|+.|||.+-. +++ -..+..+.+.+.+.++-.++
T Consensus 463 ~~~i~~V~~~gPA~~AGl-~~Gd~ivai~G~s~~---l~~-----~~~~d~i~v~~~~~~~L~e~ 518 (558)
T COG3975 463 HEKITFVFPGGPAYKAGL-SPGDKIVAINGISDQ---LDR-----YKVNDKIQVHVFREGRLREF 518 (558)
T ss_pred eeEEEecCCCChhHhccC-CCccEEEEEcCcccc---ccc-----cccccceEEEEccCCceEEe
Confidence 468999999999999998 999999999998221 111 01233556666665554444
No 63
>PF12812 PDZ_1: PDZ-like domain
Probab=93.01 E-value=0.33 Score=36.86 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=38.3
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS 51 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss 51 (241)
|+++.....|+++...|+ ..|-.|.+|||+++. +++++.+.+++..
T Consensus 31 ~gv~v~~~~g~~~~~~~i-~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ip 76 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGGI-SKGFIITSVNGKPTP--DLDDFIKVVKKIP 76 (78)
T ss_pred CEEEEEecCCChhhhCCC-CCCeEEEeECCcCCc--CHHHHHHHHHhCC
Confidence 345556678888888776 999999999999999 9999999998654
No 64
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=92.86 E-value=0.26 Score=45.71 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=44.9
Q ss_pred EEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCccccc
Q psy16075 8 RLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANM 67 (241)
Q Consensus 8 ~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~ 67 (241)
....++.-+..|+ +.||..++||+.++. ..+++..+|+... ..+.++|.+.+++..+
T Consensus 213 pgkd~slF~~sgl-q~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~rhdI 271 (275)
T COG3031 213 PGKDGSLFYKSGL-QRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGKRHDI 271 (275)
T ss_pred CCCCcchhhhhcC-CCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCcccee
Confidence 3344566677787 999999999999999 7888888887543 4789999998887654
No 65
>KOG4407|consensus
Probab=89.38 E-value=0.18 Score=55.60 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=52.5
Q ss_pred CCcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61 (241)
Q Consensus 1 ~pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~ 61 (241)
|..+||..|++++||..+-| +-||+|+.||.+++.++...+++.+++.+...+.+-|.|.
T Consensus 142 ~eT~~~~eV~~n~~~~~a~L-Q~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~ 201 (1973)
T KOG4407|consen 142 METIFIKEVQANGPAHYANL-QTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPK 201 (1973)
T ss_pred hhhhhhhhhccCChhHHHhh-hccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccc
Confidence 34689999999999999986 9999999999999999999999999998777666666543
No 66
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=88.98 E-value=1.7 Score=40.05 Aligned_cols=52 Identities=33% Similarity=0.457 Sum_probs=42.9
Q ss_pred EEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-c---EEEEEec
Q psy16075 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-N---LIITVKP 60 (241)
Q Consensus 6 Is~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~---VtLtV~p 60 (241)
+..+..+++|+.+|+ +.||+++++|+..+. +++++..++....+ . +.+.+.+
T Consensus 133 ~~~v~~~s~a~~a~l-~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 133 VGEVAPKSAAALAGL-RPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeecCCCCHHHHcCC-CCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence 446889999999998 999999999999999 88998888866544 3 4666666
No 67
>KOG3834|consensus
Probab=85.77 E-value=1.3 Score=43.95 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~ 61 (241)
|.-|.+|.++++|+++|+.---|-|++|||..+. ..-+.+..+++.+..+|+++|...
T Consensus 16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~-~dnd~Lk~llk~~sekVkltv~n~ 73 (462)
T KOG3834|consen 16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN-KDNDTLKALLKANSEKVKLTVYNS 73 (462)
T ss_pred eEEEEEeecCChHHhcCcchhhhhhheeCccccc-CchHHHHHHHHhcccceEEEEEec
Confidence 5668899999999999997778999999999995 567778888888877898888643
No 68
>KOG4371|consensus
Probab=64.89 E-value=6 Score=43.39 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=37.3
Q ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075 21 LAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61 (241)
Q Consensus 21 LqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~ 61 (241)
|.+||.++-+||+-+.++-+.+++.++++.+..|.|-|.+.
T Consensus 1187 ~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 1227 (1332)
T KOG4371|consen 1187 IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRP 1227 (1332)
T ss_pred cchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecC
Confidence 48999999999999999999999999998888899988764
No 69
>KOG1421|consensus
Probab=59.72 E-value=22 Score=37.86 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=42.7
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCc
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSN 53 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~ 53 (241)
|+|+.....|+||-+ ++ .+-.-|..|||+... ++++.+.+++.....
T Consensus 863 gvyvt~rg~gspalq-~l-~aa~fitavng~~t~--~lddf~~~~~~ipdn 909 (955)
T KOG1421|consen 863 GVYVTSRGYGSPALQ-ML-RAAHFITAVNGHDTN--TLDDFYHMLLEIPDN 909 (955)
T ss_pred ceEEeecccCChhHh-hc-chheeEEEecccccC--cHHHHHHHHhhCCCC
Confidence 899999999999999 66 999999999999998 999999999876654
No 70
>KOG4371|consensus
Probab=56.67 E-value=11 Score=41.54 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60 (241)
Q Consensus 2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p 60 (241)
+|+||..+...+.|.--|.+++||++...+|+++.+...-++.+.++---+.+.+++.+
T Consensus 1270 ~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1270 DGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTR 1328 (1332)
T ss_pred CceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehh
Confidence 58999999998888877888999999999999999988888777776334566666654
No 71
>KOG3834|consensus
Probab=43.40 E-value=34 Score=34.31 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=40.0
Q ss_pred EEEEcCCCHHhhhCCCCCCCEEEEE-CCEEcCCCCHHHHHHHHHhCCC-cEEEEEe
Q psy16075 6 ISRLVPGGLAESTGLLAVNDEVLEV-NGILVAGKSLDQVTDMMVANSS-NLIITVK 59 (241)
Q Consensus 6 Is~VvpGSpAerAGLLqvGD~ILeI-NGqsV~glshdeVv~LLKsssg-~VtLtV~ 59 (241)
|.+|.+.+||+++|+...+|.|+.+ |.+.- ..+|...+|..+.+ .+.+.|-
T Consensus 113 vl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~lIeshe~kpLklyVY 165 (462)
T KOG3834|consen 113 VLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTLIESHEGKPLKLYVY 165 (462)
T ss_pred eeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHHHHhccCCCcceeEe
Confidence 6789999999999985589999999 65443 58888899977766 4666553
No 72
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=42.49 E-value=11 Score=24.64 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=12.2
Q ss_pred cCCCcccccccccC
Q psy16075 195 ISNPQDFRCGIKGG 208 (241)
Q Consensus 195 IS~P~dFRqv~~~~ 208 (241)
||.|.||+.+.--|
T Consensus 1 IS~P~nf~H~~HVg 14 (36)
T smart00285 1 ISTPTDFKHIAHVG 14 (36)
T ss_pred CCCCCCCcEEEEee
Confidence 89999999988655
No 73
>KOG2921|consensus
Probab=40.28 E-value=40 Score=33.79 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCHHhhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy16075 3 GIFISRLVPGGLAEST-GLLAVNDEVLEVNGILVAGKSLDQVTDMMVA 49 (241)
Q Consensus 3 GIfIs~VvpGSpAerA-GLLqvGD~ILeINGqsV~glshdeVv~LLKs 49 (241)
|+.|..|...||+.-- || .+||.|.++||-+|. +.++-...++.
T Consensus 221 gV~Vtev~~~Spl~gprGL-~vgdvitsldgcpV~--~v~dW~ecl~t 265 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRGL-SVGDVITSLDGCPVH--KVSDWLECLAT 265 (484)
T ss_pred eEEEEeccccCCCcCcccC-CccceEEecCCcccC--CHHHHHHHHHh
Confidence 6788899988887622 76 999999999999998 77787777763
No 74
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=33.54 E-value=60 Score=28.77 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.2
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEE
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEV 30 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeI 30 (241)
.+.|..|..||+|+++|+ .-|.+|.+|
T Consensus 123 ~~~Vd~v~fgS~A~~~g~-d~d~~I~~v 149 (183)
T PF11874_consen 123 KVIVDEVEFGSPAEKAGI-DFDWEITEV 149 (183)
T ss_pred EEEEEecCCCCHHHHcCC-CCCcEEEEE
Confidence 478999999999999998 888877665
No 75
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=30.35 E-value=50 Score=32.31 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=31.3
Q ss_pred EEEEEEcCCCHHh---hhCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy16075 4 IFISRLVPGGLAE---STGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47 (241)
Q Consensus 4 IfIs~VvpGSpAe---rAGLLqvGD~ILeINGqsV~glshdeVv~LL 47 (241)
++-.+++.|.-|- .-|+|++||+++.|-|.+-. ++++++-+=
T Consensus 84 ~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYD--TLeevIG~r 128 (416)
T COG4100 84 LVRPQIISGTHAIACALFGILRPGDELLYITGSPYD--TLEEVIGLR 128 (416)
T ss_pred eeeeeeecchhHHHHHHHhccCCCCeEEEecCCcch--hHHHHhccC
Confidence 4445566665444 44889999999999999888 888877654
No 76
>KOG4407|consensus
Probab=29.62 E-value=24 Score=40.10 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=43.3
Q ss_pred cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61 (241)
Q Consensus 3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~ 61 (241)
.+++..+..++++..+|+ -.+|.|..|||..+.+.+ .....++++..-.+.+.|.++
T Consensus 97 s~~~~Q~~s~~~~~nsG~-~s~~~v~~itG~e~~~~T-S~~~~~vk~~eT~~~~eV~~n 153 (1973)
T KOG4407|consen 97 STNWPQEASSAAGSNSGS-SSSVGVAGITGLEPTSPT-SLPPYQVKAMETIFIKEVQAN 153 (1973)
T ss_pred ccccchhcccCcccccCc-ccccceeeecccccCCCc-cccHHHHhhhhhhhhhhhccC
Confidence 467778889999999997 999999999999999877 666666665444444445443
No 77
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=27.58 E-value=39 Score=33.03 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=26.7
Q ss_pred EEEEcCCCHHhhhCCCCCCCEEEEECCEEcC
Q psy16075 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVA 36 (241)
Q Consensus 6 Is~VvpGSpAerAGLLqvGD~ILeINGqsV~ 36 (241)
+.+|.+-++|+++|. -+||-|+.+|+.++.
T Consensus 67 ~lrv~~~~~~e~~~~-~~~dyilg~n~Dp~~ 96 (417)
T COG5233 67 VLRVNPESPAEKAGM-VVGDYILGINEDPLR 96 (417)
T ss_pred heeccccChhHhhcc-ccceeEEeecCCcHH
Confidence 567889999999998 899999999987765
No 78
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=26.64 E-value=50 Score=22.62 Aligned_cols=15 Identities=33% Similarity=0.694 Sum_probs=12.9
Q ss_pred ecCCCcccccccccC
Q psy16075 194 TISNPQDFRCGIKGG 208 (241)
Q Consensus 194 ~IS~P~dFRqv~~~~ 208 (241)
.||.|-+|..++.-|
T Consensus 2 ~IS~P~n~~H~~Hv~ 16 (46)
T cd01093 2 EISSPTNFKHRVHVG 16 (46)
T ss_pred ccCCCCCceeeeEee
Confidence 699999999998654
No 79
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=22.74 E-value=29 Score=24.73 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=11.2
Q ss_pred ecCCCcccccccccCCcc
Q psy16075 194 TISNPQDFRCGIKGGSTF 211 (241)
Q Consensus 194 ~IS~P~dFRqv~~~~~~~ 211 (241)
.||.|-|||.++-=|..-
T Consensus 1 ~Is~P~nf~H~~HVg~d~ 18 (59)
T PF00786_consen 1 DISNPTNFKHVAHVGWDP 18 (59)
T ss_dssp TB---EEEEEEEEEEEET
T ss_pred CCCCCCCCcceeeeccCC
Confidence 399999999998765443
No 80
>TIGR02563 cas_Csy4 CRISPR-associated protein, Csy4 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.
Probab=22.39 E-value=46 Score=29.28 Aligned_cols=38 Identities=34% Similarity=0.493 Sum_probs=29.4
Q ss_pred ecCCCcccccccccCCcccccchhhhhhhhcCCCCcccc
Q psy16075 194 TISNPQDFRCGIKGGSTFNSHKLSNFFAKFGLNNGRTVP 232 (241)
Q Consensus 194 ~IS~P~dFRqv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
|-|.-|+||--|+-|..-+.. ...-|..+||.+.-|||
T Consensus 146 S~StgQ~F~LfI~~~~~~~~~-~~g~F~sYGLS~~aTVP 183 (185)
T TIGR02563 146 SASSGQRFRLFIEQGERAPES-VTGKFNAYGLSNTATVP 183 (185)
T ss_pred cCCCCCceEEEEEeccCCCCC-CCCCCCccccCCCCCCC
Confidence 568899999999666543333 45678889999999999
Done!