RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16075
(241 letters)
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 91.8 bits (228), Expect = 7e-24
Identities = 57/63 (90%), Positives = 61/63 (96%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+PA
Sbjct: 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA 124
Query: 62 NQR 64
NQR
Sbjct: 125 NQR 127
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 80.5 bits (199), Expect = 6e-20
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
I ++R++ GG A+ +GL+ V DE+ EVNGI V K +++ ++ + + + P
Sbjct: 28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPG 87
Query: 62 NQRA 65
++
Sbjct: 88 SKEE 91
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 81.0 bits (200), Expect = 6e-20
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
+ ISR+V GG AE +GLL DEVLE+NGI + GK +++V D++ L + P+
Sbjct: 48 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107
Query: 62 NQRAN 66
+ ++
Sbjct: 108 SGPSS 112
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 77.4 bits (191), Expect = 1e-18
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
++R++ GG+ G L V DE+LE+NG V S+DQ+ M + + V P
Sbjct: 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPNQ 96
Query: 63 Q 63
Q
Sbjct: 97 Q 97
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 74.7 bits (184), Expect = 7e-18
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
++R++ GG+ G L V DE+ E+NGI VA ++++Q+ M+ ++ + P+
Sbjct: 25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS 84
Query: 62 NQ 63
+
Sbjct: 85 YR 86
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 67.4 bits (165), Expect = 7e-15
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
P +S ++PGG A+ G+ D +LEVNG+ V G + QV D++ A LI+TV
Sbjct: 43 PLQHVSAVLPGGAADRAGVR-KGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSV 101
Query: 62 NQRANM 67
+ +
Sbjct: 102 ESESKV 107
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 65.2 bits (159), Expect = 8e-14
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
I I R+ P + + +G L D +L ++G + SL + T ++ + S + + + P
Sbjct: 42 SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPV 101
Query: 62 NQRANMSVPRRGSYS 76
Q P G S
Sbjct: 102 PQSQRPLRPSSGPSS 116
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 64.8 bits (158), Expect = 8e-14
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
G +I++++PGG AE TG L +VLE NGI + K+ ++V ++ S I V+
Sbjct: 49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRL- 107
Query: 62 NQRANMSVPRRG 73
NMS P G
Sbjct: 108 --DLNMSGPSSG 117
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 64.0 bits (156), Expect = 1e-13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
+ I+R++ GG+ GLL V D + EVNG V G + +++ S ++I+ +
Sbjct: 29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSG 87
Query: 62 NQRA 65
Sbjct: 88 PSSG 91
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 62.4 bits (152), Expect = 5e-13
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 13/93 (13%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
G I+ L+ G E L D + + NG + G + K A
Sbjct: 25 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALF-----------KGA 73
Query: 62 NQRANMSV--PRRGSYSRTSQLSSDSHQSTQSI 92
N + +M V P+ GS S + ++ +
Sbjct: 74 NGKVSMEVTRPKPGSGGSGSLVPRLLRRNQYWV 106
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 61.6 bits (150), Expect = 7e-13
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
I IS L GGLAE TG + + D +L +N + GK L + ++ + + +K
Sbjct: 31 PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT 90
Query: 63 QRANMS 68
S
Sbjct: 91 DAQPAS 96
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 61.7 bits (150), Expect = 8e-13
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
P I+ L+ GG AE +G L++ D + +NG + G L + S +T+
Sbjct: 37 PTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS 94
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 64.5 bits (156), Expect = 4e-12
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
P IFI++++PGG A G L VND +L VN + V + + + S + + V
Sbjct: 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 148
Query: 62 NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGIT 113
A + + L SIA ++ D + +T I
Sbjct: 149 KPPAEKVMEIK--------LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 192
Score = 61.1 bits (147), Expect = 5e-11
Identities = 23/128 (17%), Positives = 43/128 (33%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
GIFIS ++ GG A+ +G L D++L VNG+ + S +Q + + I +
Sbjct: 331 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 390
Query: 62 NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEP 121
+ + + SS + + D T + +
Sbjct: 391 PEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQALS 450
Query: 122 STNSDIFE 129
D+
Sbjct: 451 FRFGDVLH 458
Score = 46.8 bits (110), Expect = 3e-06
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNL-IITVKP 60
I++++++ GG A G L + D++L VN + + + + + + KP
Sbjct: 184 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 243
Query: 61 ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNS 98
+N + S + SQ + + + T +
Sbjct: 244 SNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPT 281
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 60.0 bits (145), Expect = 5e-12
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
+ ++++ + GLA GL DE+LE+N + + D + S L++ P
Sbjct: 43 IRRLYVNSVKETGLASKKGL-KAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYP 101
Query: 61 ANQRANMSVPRRG 73
+ S P G
Sbjct: 102 ELEEGVESGPSSG 114
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 59.2 bits (144), Expect = 5e-12
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I IS++ G A+ T L V D +L VNG ++ + D+ + +++ VK
Sbjct: 31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 87
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 59.2 bits (144), Expect = 5e-12
Identities = 11/58 (18%), Positives = 20/58 (34%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
G I+ L+ G E L D + + NG + G + + + + V
Sbjct: 31 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVT 88
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 59.2 bits (144), Expect = 6e-12
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
PG+FI L+ GGLA G L+ ND VL +NG + + + ++ A+ + +T+
Sbjct: 29 PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIA 86
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 61.3 bits (149), Expect = 9e-12
Identities = 16/84 (19%), Positives = 33/84 (39%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
+S L GG+A + L V D + VNGI +A D++ ++ +++ V+
Sbjct: 33 GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYE 92
Query: 62 NQRANMSVPRRGSYSRTSQLSSDS 85
++ + L +
Sbjct: 93 LPPVSIQGSSVMFRTVEVTLHKEG 116
Score = 60.1 bits (146), Expect = 3e-11
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
+ I+ + PGG A+ G + D +L V+GI + G + + ++ + ++
Sbjct: 135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIE 192
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 59.8 bits (145), Expect = 9e-12
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
GI++ ++PG A G + VND+++ V+G+ + G + V +++ + A
Sbjct: 46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVL-----------RNA 94
Query: 62 NQRANMSVPRRGSYSRTSQLSSDSHQSTQS 91
Q ++++ RR + S TS L S + T S
Sbjct: 95 GQVVHLTLVRRKTSSSTSPLEPPSDRGTVS 124
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 59.0 bits (143), Expect = 1e-11
Identities = 15/72 (20%), Positives = 29/72 (40%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
I R++ G A+ L V D +L VNG + + ++ ++ + + P
Sbjct: 43 VPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102
Query: 62 NQRANMSVPRRG 73
+ + S P G
Sbjct: 103 EELNSPSGPSSG 114
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 57.7 bits (140), Expect = 2e-11
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
I I ++ G A+ G L DE++ V+GI VAGK+ V D+M
Sbjct: 35 PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 57.6 bits (140), Expect = 2e-11
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I+ISR++PGG+A+ G L D++L VNG+ V G+ ++ +++ A ++ + V+
Sbjct: 30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 87
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 58.2 bits (141), Expect = 2e-11
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
P ++I ++ A G +A DE+ VNG + GK+ +V M+ + I
Sbjct: 45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 102
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 57.3 bits (139), Expect = 3e-11
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
GIFI +VP A G L V D +L +NG V + V D++ + + ++
Sbjct: 37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 57.9 bits (140), Expect = 4e-11
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV--- 58
P + IS L+ GG AE +GL+ D +L VN + S D +++ +S + +
Sbjct: 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92
Query: 59 KPANQRANMSVPRRGSYS-RTSQLSSDSHQSTQSI 92
P ++ G + +T +++ T+++
Sbjct: 93 GPEGFTTHLETTFTGDGTPKTIRVTQPLGPPTKAV 127
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 56.9 bits (138), Expect = 4e-11
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
+ I LV G A G + D ++ VN V G + QV +
Sbjct: 25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 70
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 57.3 bits (139), Expect = 4e-11
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
+ + L+ G A+ G L V D VL +NG G + Q + + A L + ++
Sbjct: 38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIR 95
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 57.0 bits (138), Expect = 4e-11
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
I IS + PG A+ G L V D +L VNG+ + + ++ + V
Sbjct: 36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY 93
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 57.4 bits (139), Expect = 5e-11
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
GIF+ + GG A G + VND ++EV+G + G + ++ +
Sbjct: 35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL-----------RNT 83
Query: 62 NQRANMSVPRR--GSYSRTSQLSSDSHQ 87
R + R G S +QL + +
Sbjct: 84 KGRVRFMIGRERPGEQSEVAQLIQQTLE 111
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 57.4 bits (139), Expect = 5e-11
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK-- 59
G+ + +VPGGLA+ G L D +L++ G V G + +QV ++ +++ + V
Sbjct: 38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARD 97
Query: 60 PANQRANMSVPRRG 73
PA + S P G
Sbjct: 98 PAGDISVTSGPSSG 111
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 57.1 bits (138), Expect = 5e-11
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I IS + PG A+ G L V D +L VNG+ + + ++ + V
Sbjct: 54 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 59.1 bits (143), Expect = 6e-11
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
G I+ L+ G E L D + + NG + G + + + + V
Sbjct: 136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEV 192
Score = 51.0 bits (122), Expect = 4e-08
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQ 42
G I+ + P G + L + D + ++NG + S+
Sbjct: 45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTT 85
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 56.5 bits (137), Expect = 6e-11
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
G+F+S +V GG+A++ G L D++L VNG V + + V ++ + + + V
Sbjct: 29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVG 86
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 58.6 bits (142), Expect = 7e-11
Identities = 11/59 (18%), Positives = 28/59 (47%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
+ IS + G +A TG L + D++L ++ I + S++ ++ + + ++
Sbjct: 135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRK 193
Score = 58.6 bits (142), Expect = 7e-11
Identities = 16/73 (21%), Positives = 33/73 (45%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
IS + AE G+L + D V+ +NGI + ++ ++ +S +T++
Sbjct: 37 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF 96
Query: 63 QRANMSVPRRGSY 75
A +P G++
Sbjct: 97 DVAESVIPSSGTF 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 7e-11
Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 28/175 (16%)
Query: 56 ITVKPANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
+T+ + + VP S+ SQL + T + DDE +L G L
Sbjct: 9 LTLSHGSLEHVLLVPT-ASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 116 IC--RIEPSTNSDIFERTKIVFV-FTMLSKTTKWMSDMNGHALRILARESLEELSNYASS 172
+EPS + + F ++ + HAL A L + ++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEF-----ENCYLEGNDIHAL--AA--KLLQENDTTLV 117
Query: 173 RSKNIISTFLGGTPGKTKSHITISNPQD---FRCGIKGGSTFNSHKLSNFFAKFG 224
++K +I ++ + + + FR +G + A FG
Sbjct: 118 KTKELIKNYIT---ARIMAKRPFDKKSNSALFRAVGEGNAQ--------LVAIFG 161
Score = 47.4 bits (112), Expect = 2e-06
Identities = 45/270 (16%), Positives = 87/270 (32%), Gaps = 77/270 (28%)
Query: 5 FISRLV-PGGLAESTGLLAV-----NDEVLEVNGI--LVAGKSLDQVTDMMVANSSNLII 56
++S LV P + + +L + + LE N I L A L Q D + + LI
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA--KLLQENDTTLVKTKELIK 124
Query: 57 TVKPANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATT----NNSED--DE-QD----- 104
A A ++ + S L + + N++D +E +D
Sbjct: 125 NYITARIMAKRPFDKKSN----SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 105 -----EVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNG-HALRIL 158
+++ + TL +F + +L W+ + + L
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-----GLNILE----WLENPSNTPDKDYL 231
Query: 159 ARE--S-----LEELSNYASSRSKNIISTFLGGTPGKTKSHITISNPQDFRCGIKGGSTF 211
S + +L++Y + + LG TPG + R +KG +
Sbjct: 232 LSIPISCPLIGVIQLAHYV------VTAKLLGFTPG------------ELRSYLKGATGH 273
Query: 212 NSHKLSNFFAKFGLNNGRTVPSGNKTWEHF 241
+ ++ A + +WE F
Sbjct: 274 SQGLVT---A--------VAIAETDSWESF 292
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 58.6 bits (142), Expect = 7e-11
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
P IFI++++PGG A G L VND +L VN + V + + + S + + V
Sbjct: 35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 92
Score = 57.5 bits (139), Expect = 2e-10
Identities = 11/58 (18%), Positives = 26/58 (44%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I++++++ GG A G L + D++L VN + + + + + + V
Sbjct: 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVA 187
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 56.6 bits (137), Expect = 7e-11
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
PGIFI++++PGG A G L VND VL VN + V+ + + + + + V+
Sbjct: 34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 91
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 56.6 bits (137), Expect = 8e-11
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
+++ RL G AE +G + + DE+LE+NG + +++ + + +K
Sbjct: 49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLK 106
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 56.6 bits (137), Expect = 8e-11
Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
I++++++ GG A G L + D++L VN + + + ++ + S + + V
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVA-- 90
Query: 62 NQRANMSVPRRGSYS 76
+ +M + R +
Sbjct: 91 -KPTSMYISRHHHHH 104
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 57.1 bits (138), Expect = 9e-11
Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
+ I+R+ G +E + + DE+L++ G + G + + +++ A +
Sbjct: 57 KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPV------ 110
Query: 62 NQRANMSVPRRGSYSRTSQLSSDS 85
+ + R+ S+ + + DS
Sbjct: 111 ----TIVIRRKSLQSKETTAAGDS 130
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 56.2 bits (136), Expect = 9e-11
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIFIS ++ GG A+ +G L D++L VNG+ + S +Q + + I +
Sbjct: 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ 92
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 56.6 bits (137), Expect = 1e-10
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
IFI+ + P G+A T L V D ++ + G G + Q +++ S ++ + V
Sbjct: 53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG 112
Query: 62 NQRANMSV 69
+ SV
Sbjct: 113 GDVSETSV 120
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 56.7 bits (137), Expect = 1e-10
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
+ I LV G A G + D ++ VN V G + QV + + P
Sbjct: 43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS---------IPI 93
Query: 62 NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDE 102
++ + R L D S+ T+ D E
Sbjct: 94 GASVDLELCRG------YPLPFDPDDPNTSLVTSVAILDKE 128
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 56.3 bits (136), Expect = 1e-10
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
I I LV G+AE +G L D ++ VN + SL + +++
Sbjct: 44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEIL 89
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 55.5 bits (134), Expect = 1e-10
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
IF+ + LA G + D VL++NG + SL ++ + L + V+
Sbjct: 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 83
Query: 63 QRANMSVP 70
+ ++VP
Sbjct: 84 RATLLNVP 91
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 55.5 bits (134), Expect = 1e-10
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
FI R+ GG+ +S + V D + +NG + G V + + T+K
Sbjct: 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMK 85
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 55.4 bits (134), Expect = 1e-10
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
IF+ + GLA G L D +L++NG + SL ++ + L + V
Sbjct: 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 55.3 bits (134), Expect = 1e-10
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIIT 57
I+I +VP G A++ G L DE++ V+G V GKS V +M + +
Sbjct: 28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVN 82
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 56.3 bits (136), Expect = 2e-10
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
FI+++ G LA++ G L DEVLE NG L+ G + ++V ++++ + + +
Sbjct: 66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVEL 121
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 54.7 bits (132), Expect = 2e-10
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVK 59
PGIF++ + G AE + L V+DE++ +N + + + M + +L++ V+
Sbjct: 28 PGIFVASVEAGSPAEFSQLQ-VDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVR 86
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 55.5 bits (134), Expect = 2e-10
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
P ++I ++ A G +A DE+ VNG + GK+ +V M+ + I
Sbjct: 50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 107
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 54.6 bits (132), Expect = 2e-10
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
IF+ + LA G + D VL++NG + SL ++ + L + V
Sbjct: 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV 77
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 55.2 bits (133), Expect = 2e-10
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
P + IS L+ GG AE +GL+ D +L VN + S D +++ +S + +
Sbjct: 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI-- 83
Query: 62 NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATT 95
+ ++ + + + ++I T
Sbjct: 84 -------LRGPEGFTTHLETTFTGDGTPKTIRVT 110
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 54.6 bits (132), Expect = 2e-10
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
+ ISR+ PG A + L D V+ ++G+ + + + + + S NL +T++ +
Sbjct: 26 PLTISRITPGSKAAQSQLS-QGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84
Query: 63 Q 63
+
Sbjct: 85 R 85
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 55.1 bits (133), Expect = 3e-10
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
I IS ++ GG AE G L ND V VNG+ + + + N IT++
Sbjct: 39 TSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIR-- 94
Query: 62 NQRANMSVPRRGSYSRTSQL 81
R + G + RT+ L
Sbjct: 95 --R-----KKGGGWRRTTYL 107
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 55.0 bits (133), Expect = 3e-10
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF+SR+ GG A G L V D VL +NG+ V D ++ A S + + ++
Sbjct: 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLE 95
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 54.5 bits (132), Expect = 3e-10
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
GI++ ++P G AES G + D VL VNG+ + G + Q + + + + +
Sbjct: 33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 55.1 bits (133), Expect = 3e-10
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
V + +S + GG AE G + DE++ +NG +V +L + +
Sbjct: 42 VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAAL 88
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 55.2 bits (133), Expect = 4e-10
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
IS + AE G+L + D V+ +NGI + ++ ++ +S +T++
Sbjct: 46 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF 105
Query: 63 QRANMSVPRRGS 74
A +P GS
Sbjct: 106 DVAESVIPSSGS 117
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 55.1 bits (133), Expect = 4e-10
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
+ + ++P G A G + D ++ +N + V G + V + + P
Sbjct: 44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS---------VPI 94
Query: 62 NQRANMSVPRRGSYSRTSQLSSDSHQST 89
Q N+ + R + ++S S+
Sbjct: 95 GQSVNLVLCRGYPLPFDPEDPANSGPSS 122
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 54.6 bits (132), Expect = 4e-10
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PG++I L+PG A + G L++ D +LEVNG + G + D++ + V +
Sbjct: 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS 95
Query: 62 NQRANMSVP 70
+ +
Sbjct: 96 DVETAKKIH 104
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 55.1 bits (133), Expect = 4e-10
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA--NSSNLIITVK 59
GIFIS ++ GG A+ +G L D++L VNG+ + S +Q + + +I K
Sbjct: 38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 97
Query: 60 PANQRANMSVPRRGSYSRT 78
P + R S R
Sbjct: 98 PEEYSRFEANSRVDSSGRI 116
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 55.1 bits (133), Expect = 4e-10
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK-- 59
GI++SR+ G A G L D++L VNG + D+ + + V+
Sbjct: 47 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 106
Query: 60 PANQRANMSVPRRG 73
Q +S P G
Sbjct: 107 LQVQNGPISGPSSG 120
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 54.6 bits (132), Expect = 4e-10
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
GI++ +V GG A+ G LA D++L V+G + G S ++ ++M SS + + V
Sbjct: 38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 54.6 bits (132), Expect = 4e-10
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
I++ ++P G A G L D ++EVNG+ +AGKS ++V ++ + +++
Sbjct: 39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLL-- 96
Query: 62 NQRANMSVPRRGSYSRTSQLSS 83
V R+ ++++
Sbjct: 97 -------VFRQEEAFHPREMNA 111
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 53.9 bits (130), Expect = 6e-10
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GI++SR+ G A G L D++L VNG + D+ + + V+
Sbjct: 37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQ 94
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 53.9 bits (130), Expect = 6e-10
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
+++ RL G A G + V D+++E+NG + + +++ + + + +K
Sbjct: 37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLK--- 93
Query: 63 QRANMSVPRRG 73
R S P G
Sbjct: 94 -RGTGSGPSSG 103
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 53.8 bits (130), Expect = 6e-10
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
+ I+ + PGG A+ G + D +L V+GI + G + + ++ + ++
Sbjct: 33 PVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIE 89
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 53.9 bits (130), Expect = 7e-10
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
GI++ ++P G AES G + D VL VNG+ + G + Q + + + + +
Sbjct: 42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 53.9 bits (130), Expect = 7e-10
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
+ I+R+ PG A + L D +L ++G + D + A S L + + A
Sbjct: 30 PLVITRITPGSKAAAANLC-PGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE 88
Query: 63 QRANMSVPRRGSYS 76
R G S
Sbjct: 89 TRLWSPQVSSGPSS 102
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 53.8 bits (130), Expect = 7e-10
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF+ + E G + + D+++ V+G + G + Q +++ +++T+
Sbjct: 33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 90
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 53.9 bits (130), Expect = 7e-10
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF+S ++ GG A+ +G L D +L VNG+ + + +Q + ++ I +
Sbjct: 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQ 96
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 54.5 bits (131), Expect = 8e-10
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
P + IS L+ G A S G+L D ++ V V G +L + ++ + ++ +K
Sbjct: 49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 54.3 bits (131), Expect = 8e-10
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
I++ ++P G A G L D ++EVNG+ + GKS ++V ++
Sbjct: 58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 54.0 bits (130), Expect = 8e-10
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIFI +++ A T L D++LEV+G+ + S + + + + ++ V+
Sbjct: 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQ 107
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 53.4 bits (129), Expect = 8e-10
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
G +I + PG AE GLL D ++EVNG V ++ QV + A + + + V
Sbjct: 26 KLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVD 84
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 54.0 bits (130), Expect = 8e-10
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
I + R+ P GLA G + +EVL +NG + G + ++ +
Sbjct: 43 VITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVI 98
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 53.5 bits (129), Expect = 9e-10
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIFI ++ A G L D ++EV+G+ + S +Q + + + ++ V+
Sbjct: 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 53.4 bits (129), Expect = 9e-10
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
+ ISR+ G A L D + +NG + + + + +L ++V
Sbjct: 33 PLTISRVHAGSKAALAALC-PGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVS 88
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 53.9 bits (130), Expect = 9e-10
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I++++++ GG A+ G L V D +L VN + + ++ ++ S + + V
Sbjct: 54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVG 111
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 56.3 bits (135), Expect = 9e-10
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
I IS++ G A+ T L V D +L VNG ++ + D+ + +++ VK
Sbjct: 104 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 163
Query: 63 QRANMSVPRRGSYSRTSQLSSDSHQSTQS 91
+ + G S S Q
Sbjct: 164 EVSPYFKNSAGGTSVGWDSPPASPLQRQP 192
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 53.9 bits (130), Expect = 1e-09
Identities = 12/63 (19%), Positives = 30/63 (47%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
I++ + PGG+ G + D +L V+G+ + S + ++ SS++++
Sbjct: 54 PIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVK 113
Query: 63 QRA 65
+ +
Sbjct: 114 EGS 116
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 53.5 bits (129), Expect = 1e-09
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
GI++S + PG LAE GL V D++L VN +A + + + S L+++V
Sbjct: 35 VGIYVSLVEPGSLAEKEGLR-VGDQILRVNDKSLARVTHAEAVKAL-KGSKKLVLSVY-- 90
Query: 62 NQRANMSVPRRG 73
+S P G
Sbjct: 91 -SAGRISGPSSG 101
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 53.1 bits (128), Expect = 1e-09
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I+I++++ GG A+ G L + D +L VN + ++ + S + + V
Sbjct: 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVA 90
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 52.7 bits (127), Expect = 1e-09
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
+ ISR+ PG A L + D + ++G + + + + + + NL +TV +
Sbjct: 28 PLAISRVTPGSKAALANLC-IGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSE 86
Query: 63 QRANM 67
+++
Sbjct: 87 HESDL 91
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 52.8 bits (127), Expect = 1e-09
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
V I L+ GG+AE G+ V ++E+NG V +++ ++ + + P
Sbjct: 30 VQNGIICSLMRGGIAERGGVR-VGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 88
Query: 61 A 61
A
Sbjct: 89 A 89
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 53.6 bits (129), Expect = 1e-09
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIFI ++ A G L D ++EV+G+ + S +Q + + + ++ V+
Sbjct: 59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 53.2 bits (128), Expect = 1e-09
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
P ++I ++PGG G L D+++ +N + G S ++ ++
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 53.1 bits (128), Expect = 1e-09
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GI++ L+PG A G + ND++L V+ + V G + V +++ + + + +
Sbjct: 44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLI 101
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 53.1 bits (128), Expect = 2e-09
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
I++ + G A G L D+++ VNG + G + ++ ++ + + V
Sbjct: 53 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 52.3 bits (126), Expect = 2e-09
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I I + G A G L D++LEVNGI + + D+ +++ + +T+
Sbjct: 31 AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLY 87
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 52.3 bits (126), Expect = 2e-09
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I ++++ G AE+ L D ++ +NG + + ++S L + +
Sbjct: 31 PIIVTKVTERGKAEAADLR-PGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLD 86
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 52.8 bits (127), Expect = 2e-09
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF+S++V G A G L ++D ++EVNG ++ + DQ + +++ V
Sbjct: 41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 52.4 bits (126), Expect = 2e-09
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
+ IS L GG A + + D VL ++GI G + + + + A + +L +T++ A+
Sbjct: 30 PLTISSLKDGGKASQAHVR-IGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS 88
Query: 63 QRANMSVPRRGSYS 76
A G S
Sbjct: 89 AAAKSEPVSSGPSS 102
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 51.9 bits (125), Expect = 2e-09
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
I+ +V A GLL + E+NG V G Q+ D++ + + + IT+ PA
Sbjct: 27 ITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 81
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 52.4 bits (126), Expect = 3e-09
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIFIS+++P A GL D+VL VN + + +++ + + + V+
Sbjct: 41 LGIFISKVIPDSDAHRAGLQ-EGDQVLAVNDVDFQDIEHSKAVEIL-KTAREISMRVR 96
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 52.9 bits (127), Expect = 3e-09
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
GI+I+ + PG AE +GL V D++LEVNG D+ ++ +S +LI+TVK
Sbjct: 46 LGIYITGVDPGSEAEGSGLK-VGDQILEVNGRSFLNILHDEAVRLL-KSSRHLILTVK-- 101
Query: 62 NQRANMSVPRRGSYSRTSQLSSDSHQST 89
R + T ++S S S+
Sbjct: 102 --DVGRLPHARTTVDETKWIASSSGPSS 127
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 52.0 bits (125), Expect = 3e-09
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
PG FI + P AE++GL D ++EVNG+ + GK V + A + V
Sbjct: 33 PGQFIRSVDPDSPAEASGLR-AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 51.9 bits (125), Expect = 3e-09
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
+ IS L GG A + + D VL ++GI G + + + + + +L +T++
Sbjct: 28 PLTISSLKDGGKAAQANVR-IGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQ 83
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 52.0 bits (125), Expect = 3e-09
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
P I + GG A + G L V +LEVNG+ + GK + ++
Sbjct: 32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARII 77
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 52.5 bits (126), Expect = 3e-09
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PGIFIS + PG L+ GL + D+++EVNG+ + + +++ +S +L I++ A
Sbjct: 41 PGIFISHVKPGSLSAEVGLE-IGDQIVEVNGVDFSNLDHKEAVNVL-KSSRSLTISIVAA 98
Query: 62 NQRANMSVPRRGSYS 76
R R G S
Sbjct: 99 AGRELFMTDRSGPSS 113
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 51.6 bits (124), Expect = 3e-09
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
G+++ + P G + GL D +L+VN + V ++ + + L + +
Sbjct: 32 KGVYVKNIRPAGPGDLGGLK-PYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVIS 88
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 51.5 bits (124), Expect = 3e-09
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
+ ISRL PGG A G+ V D VL ++G + + + + A L + +
Sbjct: 28 PLSISRLTPGGKAAQAGVA-VGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLS 83
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 52.4 bits (126), Expect = 3e-09
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
GIFIS++ P G A G L V +LEVN + G + + ++ + L + V
Sbjct: 44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103
Query: 62 NQRA 65
+
Sbjct: 104 FESG 107
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 52.0 bits (125), Expect = 3e-09
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF+S++ G AE GL V D++ EVNG+ + ++ ++ +SS L + V+
Sbjct: 37 GIFVSKVEEGSSAERAGLC-VGDKITEVNGLSLESTTMGSAVKVL-TSSSRLHMMVR 91
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 51.1 bits (123), Expect = 4e-09
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
+S ++ G A+ GL D++L VN I V S + V ++ S L + +
Sbjct: 24 PCVLSCVMRGSPADFVGLR-AGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 52.0 bits (125), Expect = 5e-09
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIFISR+ G A G+ V D++LEVNG+ + G + + + + + + V
Sbjct: 46 EGIFISRVSEEGPAARAGVR-VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW 102
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 52.1 bits (125), Expect = 5e-09
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
IF+ + P G A + G + + DE+LE+N ++ G+S + ++ S + +
Sbjct: 51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFI 108
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 51.6 bits (124), Expect = 6e-09
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
GIF+ + GG A+ G + VND+++EV+GI + G + + ++ N+ +
Sbjct: 40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIG-- 97
Query: 62 NQRANMSVPRRG 73
R S P G
Sbjct: 98 --REKPSGPSSG 107
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 50.7 bits (122), Expect = 6e-09
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I ++++ G A+ L D ++ +NG G + + + S L + +
Sbjct: 27 PIMVTKVAERGKAKDADLR-PGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLD 82
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 54.4 bits (130), Expect = 6e-09
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
GIF++ ++ A GL D++L VN + ++ ++ +T+
Sbjct: 32 GIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK 90
Query: 63 QRANMSVPRRGSYSRT 78
++ +
Sbjct: 91 KKDVYRRIVESDVGDS 106
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 50.7 bits (122), Expect = 7e-09
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
PG FI + GG A+ GL D ++EVNG+ V + ++V D + ++ N+ + V
Sbjct: 27 PGSFIKEVQKGGPADLAGLE-DEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 51.2 bits (123), Expect = 7e-09
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
I I + G A G L D++LEVNG+ + S ++ + + + V
Sbjct: 44 AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVY 100
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 52.5 bits (126), Expect = 7e-09
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM-VANSSNLIITVKP 60
GIF+ + A GL D+VL++NG AG S D+ ++ A + +T++
Sbjct: 27 NGIFVQLVQANSPASLVGLR-FGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD 85
Query: 61 ANQRANMSVPRRGSYS 76
+++ + +
Sbjct: 86 RPFERTITMHKDSTGH 101
Score = 41.0 bits (96), Expect = 8e-05
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
I+ +V A GLL + E+NG V G Q+ D++ + + + IT+ PA
Sbjct: 107 KNGKITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 165
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 53.0 bits (127), Expect = 8e-09
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
G+FIS L+ GG A+S G L V DE++ +NG ++ + ++V +++ + I V+
Sbjct: 110 CGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLI-RTEKTVSIKVRHI 167
Query: 62 NQRANMSVPR-RGSYSRTSQLSSDS 85
S P ++ Q S+S
Sbjct: 168 GLIPVKSSPDEPLTWQYVDQFVSES 192
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 54.2 bits (129), Expect = 9e-09
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
V I L+ GG+AE G+ V ++E+NG V + +++ + + + + P
Sbjct: 314 VQNGIICSLMRGGIAERGGVR-VGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP 372
Query: 61 ANQ 63
A
Sbjct: 373 AAM 375
Score = 52.7 bits (125), Expect = 2e-08
Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVK 59
P + ++ ++ GG A +G L++ D+++ +NG + G L ++ + N + + + +
Sbjct: 232 PTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIV 291
Query: 60 PANQRANMSVPRRGS 74
+ + R
Sbjct: 292 SCPPVTTVLIKRPDL 306
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 51.3 bits (123), Expect = 1e-08
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGI-LVAGKSLDQVTDMMVANSSNLIITVK- 59
IF+ + PG +A+ L ND++L +N L S Q ++ + +L + V
Sbjct: 54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAR 113
Query: 60 -PANQRANMSVPRRG 73
P + +++ S P G
Sbjct: 114 EPVHTKSSTSGPSSG 128
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 50.4 bits (121), Expect = 1e-08
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIFISR+ G A G+ V D++LEVNG+ + G + + + + + + V
Sbjct: 34 EGIFISRVSEEGPAARAGVR-VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW 90
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 49.6 bits (119), Expect = 2e-08
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
PG +I + PG A +GL D ++EVNG V G +V + A + V
Sbjct: 28 PGQYIRSVDPGSPAARSGLR-AQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 50.7 bits (121), Expect = 2e-08
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
IF+ ++ GG A GL D +++VNG V GK+ QV ++ + + L ++V P
Sbjct: 61 DTIFVKQVKEGGPAFEAGLC-TGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPK 119
Query: 62 NQ 63
+
Sbjct: 120 DS 121
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 50.5 bits (121), Expect = 2e-08
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGI-LVAGKSLDQVTDMMVANSSNLIITV 58
GIF+ + G +A G L D++L +NG L + Q ++ + + +
Sbjct: 49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 50.3 bits (120), Expect = 2e-08
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 3 GIFISRLVPGGLAE-STGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
+ +SR+ PG A+ L D+V+ +NG +A + DQV + A+ +
Sbjct: 42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM-- 99
Query: 62 NQRANMSVPRRGSYSRTSQLSSDS 85
+ V Y + S
Sbjct: 100 -----LLVRPNAVYDVVEESGPSS 118
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 50.1 bits (120), Expect = 2e-08
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GI+I ++ GG + G + D +L+VN + S D ++
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 53.0 bits (126), Expect = 2e-08
Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
GIF++ ++ A G L D++L VN + ++ ++ +T+
Sbjct: 23 VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQ 81
Query: 62 NQRANMSVPRRGSYSRTSQLSS 83
++ + + +
Sbjct: 82 KKKDVYRRIVESDVGDSFYIRT 103
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 49.2 bits (118), Expect = 3e-08
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
G I + PG AE+ GL ND V+ VNG V D V +M+ + V
Sbjct: 29 KGQIIKDIEPGSPAEAAGLK-NNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 84
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 49.7 bits (119), Expect = 3e-08
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
G++++ + P G+A G+L +D ++EVNG V S ++V + + + S ++ +
Sbjct: 32 KGVYMTDITPQGVAMRAGVL-ADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLL 87
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 49.3 bits (118), Expect = 3e-08
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
+ +S++ GG A + + DE++ +NG + G S + ++ + L + V+
Sbjct: 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILIKGSFRILKLIVR 91
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 49.8 bits (119), Expect = 3e-08
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
++ + GG+A GL + D ++EVNG V QV +M+ + L++ V
Sbjct: 45 ALQYLESVDEGGVAWRAGLR-MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 103
Query: 62 NQRANM 67
+ +M
Sbjct: 104 TRHPDM 109
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 49.7 bits (119), Expect = 3e-08
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK-- 59
I IS ++PGG A+ GLL ND V+ VNG + + + I VK
Sbjct: 46 TSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRP 103
Query: 60 PANQRANMSVPRRG 73
Q A +S P G
Sbjct: 104 RKVQVAPLSGPSSG 117
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 49.8 bits (119), Expect = 3e-08
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
GIFI ++ GG A G L +ND+++ VNG + GKS + + +
Sbjct: 55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETL 100
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 48.9 bits (117), Expect = 3e-08
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
+ + + GG AE GL D VL++N V ++ + + S +I+ V
Sbjct: 25 PVRVQAVDSGGPAERAGLQ-QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 79
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 49.4 bits (118), Expect = 3e-08
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GI++S++ G +A G L D++LE NGI + + Q ++ + I +
Sbjct: 42 GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQ 98
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 49.4 bits (118), Expect = 4e-08
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
G I + G AE GLL D VL +NG+ V + QV +++ + +++ + V
Sbjct: 37 TDGHLIRVIEEGSPAEKAGLL-DGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLD 95
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 49.0 bits (117), Expect = 4e-08
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 3 GIFISRLVPGGLAE-STGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA----NSSNLIIT 57
+ +SR+ PG A+ L D+V+ +NG +A + DQV + A +S L++
Sbjct: 44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 103
Query: 58 VKP 60
V+P
Sbjct: 104 VRP 106
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 50.3 bits (120), Expect = 4e-08
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF+ + GG A G + VND ++EV+G + G + ++ + +
Sbjct: 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIG 168
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 48.8 bits (116), Expect = 5e-08
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
+ ++++ + GLA GL DE+LE+N + + D + S L++ P
Sbjct: 34 IRRLYVNSVKETGLASKKGLK-AGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYP 92
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 49.0 bits (117), Expect = 5e-08
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
G I + G AE GLL D VL +NG+ V + QV +++ + +++ + V
Sbjct: 25 TDGHLIRVIEEGSPAEKAGLL-DGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLD 83
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 48.5 bits (116), Expect = 5e-08
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
+ + + GG A G L D++L++N S ++ D++ +L ITV
Sbjct: 32 PLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVV--- 86
Query: 63 QRANMSVPRRG 73
R S P G
Sbjct: 87 -RCTSSGPSSG 96
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 49.3 bits (117), Expect = 6e-08
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
GI+++R+ GG AE GL + D++++VNG + + DQ + S ++ +
Sbjct: 64 KGIYVTRVSEGGPAEIAGLQ-IGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 48.1 bits (115), Expect = 7e-08
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
PG F+ + PG A+ G+ D ++ V G V G ++ + S + +TV
Sbjct: 30 PGQFLWEVDPGLPAKKAGMQ-AGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVD 87
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 48.1 bits (115), Expect = 7e-08
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
F++R+ A+ GL D + VNG+ V G ++ D++ A+ + L +
Sbjct: 37 MVTFVARVHESSPAQLAGLT-PGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 48.2 bits (115), Expect = 7e-08
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
+ + G A+ GL D + +NG V G V ++++ + + + +
Sbjct: 34 VHHVVWSVEDGSPAQEAGLR-AGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTA 91
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 48.7 bits (116), Expect = 1e-07
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PG FI + P AE++GL D ++EVNG+ + GK V + A + V
Sbjct: 33 PGQFIRSVDPDSPAEASGLR-AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV--- 88
Query: 62 NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDE 105
+ + + + S H + N E +++
Sbjct: 89 -----VDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENS 127
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 48.3 bits (115), Expect = 1e-07
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GI+IS + P +A G + D ++++NGI V + + V + + N + +
Sbjct: 48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE-EAVALLTSEENKNFSLLIA 104
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 47.7 bits (114), Expect = 1e-07
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
G I + PG AE+ GL ND V+ VNG V D V +M+ + V
Sbjct: 30 KGQIIKDIEPGSPAEAAGLK-NNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLD 87
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 47.9 bits (114), Expect = 2e-07
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF++ ++ A GL D++L VN + ++ ++ +T+
Sbjct: 51 VGIFVAGVLEDSPAAKEGLE-EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 107
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 47.0 bits (112), Expect = 2e-07
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
+ + + GG AE GL D VL++N V ++ + + S +I+ V
Sbjct: 37 PVRVQAVDSGGPAERAGLQ-QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 91
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 47.0 bits (112), Expect = 2e-07
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF++R+ P G A LL D++++ NG Q ++ + + + +
Sbjct: 43 DGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 46.6 bits (111), Expect = 3e-07
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
GIF++R+ P G A LL D++++ NG Q ++ + + + +
Sbjct: 35 DGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 90
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 45.8 bits (109), Expect = 4e-07
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
+ + + PGG A G+ D +++VNG +V S +V ++ + + + +T+
Sbjct: 29 RIVLVQSVRPGGAAMKAGVK-EGDRIIKVNGTMVTNSSHLEVVK-LIKSGAYVALTL 83
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 46.9 bits (111), Expect = 5e-07
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
++ + GG+A GL + D ++EVNG V QV +M+ + L++ V
Sbjct: 65 ALQYLESVDEGGVAWRAGLR-MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 123
Query: 62 NQR 64
+
Sbjct: 124 TRH 126
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 48.2 bits (114), Expect = 5e-07
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 1/104 (0%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
PG FI + P AE++GL D ++EVNG+ + GK V + A + V
Sbjct: 33 PGQFIRSVDPDSPAEASGLR-AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
Query: 62 NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDE 105
R + I N+ E +
Sbjct: 92 ETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAA 135
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 46.9 bits (110), Expect = 1e-06
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV-KP 60
GIF++R+ P G A LL D++++ NG Q ++ + + + + +
Sbjct: 24 DGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 81
Query: 61 ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQD 104
A + R S S + + +A T S D
Sbjct: 82 VGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWD 125
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 44.8 bits (106), Expect = 1e-06
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
I ++ A GL D + +NG+ G + QV D++ ++ + L I
Sbjct: 48 MFTLICKIQEDSPAHCAGLQ-AGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 43.3 bits (102), Expect = 5e-06
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
+ + L P A G D ++ + + +L +V ++ + + I
Sbjct: 45 PVQVHFLDPYCSASVAGA-REGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEI 96
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 42.5 bits (100), Expect = 1e-05
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
+ + L P A G D ++ + G+ ++ +V ++ + +
Sbjct: 37 PVQVHFLDPHCSASLAGAK-EGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEV 88
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 41.7 bits (97), Expect = 2e-05
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 1 VPGIFISRLVPGGLA-ESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
+ + + ++ + + D +LE+NG V +++V D + S L + ++
Sbjct: 43 ATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIE 102
Query: 60 --PANQRANMSVPRRG 73
P QR + S P G
Sbjct: 103 HDPVPQRLDQSGPSSG 118
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 38.0 bits (89), Expect = 3e-04
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
G + ++V S GL D ++EVN V + +QV DM+V + P
Sbjct: 27 GGQRVKQIVDS--PRSRGLK-EGDLIVEVNKKNVQALTHNQVVDMLVES---------PK 74
Query: 62 NQRANMSVPRRG 73
+ V R+
Sbjct: 75 GSEVTLLVQRQT 86
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 36.0 bits (83), Expect = 0.002
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 12/89 (13%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
G + ++ L D + E+ V + QV ++ + P
Sbjct: 35 GQKVKMILDSQWC---QGLQKGDIIKEIYHQNVQNLTHLQVVEV---------LKQFPVG 82
Query: 63 QRANMSVPRRGSYSRTSQLSSDSHQSTQS 91
+ + R G S T S +
Sbjct: 83 ADVPLLILRGGPPSPTKTAKMGSGSGQIT 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.018
Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 55/257 (21%)
Query: 5 FISRLVPGGLAESTGLLAVNDE--VLEVNGILVAGKSLDQVTDMMVANSSNLI------- 55
+SRL P L LL + VL ++G+L +GK+ + V S +
Sbjct: 130 NVSRLQPY-LKLRQALLELRPAKNVL-IDGVLGSGKT---WVALDVCLSYKVQCKMDFKI 184
Query: 56 --ITVKPANQ-RANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSE------------- 99
+ +K N + + ++ Y +S S S+ ++ +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 100 ------DDEQD-EVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNG 152
+ Q+ + + ++ C+I +T R K V F + TT D +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLS---CKILLTT------RFKQVTDFLSAATTTHISLDHHS 295
Query: 153 HALRILARESLEELSNYASSRSKNIISTFLGGTPGKTKSHITI--SNPQDFRCGIKGGST 210
L E L Y R +++ L P ++I + +D
Sbjct: 296 MTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIAESIRDGLATWDNWKH 349
Query: 211 FNSHKLSNFFAKFGLNN 227
N KL+ LN
Sbjct: 350 VNCDKLTTIIESS-LNV 365
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane,
cell membrane, membrane, metal-binding,
metalloprotease, transmembrane; 1.67A {Escherichia coli
k-12} PDB: 2zpl_A
Length = 95
Score = 31.9 bits (72), Expect = 0.042
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA 65
+ + +A + E+ V+GI ++ + + ITV P
Sbjct: 6 VGEIAANSIAAEAQIAP-GTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQ 64
Query: 66 NMSV 69
V
Sbjct: 65 RRDV 68
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 33.8 bits (76), Expect = 0.044
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
G+ + + A GL + D+++ ++ + +S+ + I+
Sbjct: 496 QGLDVLNVYHDESAYHAGL-SAGDKIIAIDHLQATEQSVKR------------ILERYIP 542
Query: 62 NQRANMSVPRRG 73
+ RR
Sbjct: 543 GDTVTIHAFRRD 554
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388,
selenomethionine SAD, unknown F; 2.00A {Staphylococcus
aureus subsp} PDB: 3lnl_A*
Length = 370
Score = 32.6 bits (74), Expect = 0.084
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 5 FISRLVPGGLAES---TGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIIT 57
+ VP AES GLL + DE +EV G+L A +V + + N II+
Sbjct: 13 LLDHHVPFSTAESWDNVGLL-IGDEDVEVTGVLTALDCTLEVVNEAIEKGYNTIIS 67
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 31.1 bits (71), Expect = 0.10
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
GI++ + P ++ G+ D +++VNG + ++ + V S L++ V+ N
Sbjct: 36 GIYVQEVAPNSPSQRGGIQD-GDIIVKVNGRPL--VDSSELQE-AVLTESPLLLEVRRGN 91
Query: 63 QRANMSV 69
S+
Sbjct: 92 DDLLFSI 98
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 32.2 bits (74), Expect = 0.14
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 15/71 (21%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
G+ I +++ G A GL D +L + MV N+ ++ V+
Sbjct: 257 GVLIHKVILGSPAHRAGLRP-GDVILAIGEQ-------------MVQNAEDVYEAVRT-Q 301
Query: 63 QRANMSVPRRG 73
+ + + R
Sbjct: 302 SQLAVQIRRGR 312
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 31.8 bits (73), Expect = 0.18
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 15 AESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
AE G A D ++ V+G V G SL V+D++
Sbjct: 112 AEKAGARA-GDVIVTVDGTAVKGMSLYDVSDLL 143
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 31.5 bits (72), Expect = 0.20
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
G +I ++P AE+ GL ND ++ +NG V S + V+D ++ S L + V+ N
Sbjct: 255 GAYIIEVIPDTPAEAGGLKE-NDVIISINGQSV--VSANDVSD-VIKRESTLNMVVRRGN 310
Query: 63 QRANMSV 69
+ ++V
Sbjct: 311 EDIMITV 317
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 29.7 bits (67), Expect = 0.25
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
G + +++ + L D ++E+N V S +V D+ + P
Sbjct: 33 GQRVKQILD---IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDI---------LKDCPIG 80
Query: 63 QRANMSVPRRGSYS 76
++ + R S
Sbjct: 81 SETSLIIHRGSGPS 94
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase,
mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB:
1yta_A 1j9a_A
Length = 180
Score = 30.6 bits (68), Expect = 0.31
Identities = 23/178 (12%), Positives = 57/178 (32%), Gaps = 41/178 (23%)
Query: 16 ESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSY 75
E TGL D ++E+ ++ ++ + I + Q A M ++
Sbjct: 13 EMTGLDPERDRIIEIATLVT-------DANLNILAEGPTIAVHQSDEQLALMDDWNVRTH 65
Query: 76 SRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPSTNSDIFERT---- 131
+ + + + + + + + ++ + + NS +R
Sbjct: 66 TASG--------LVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFK 117
Query: 132 -----------KIVFVFTMLSKTTKWMSDM-------NGHALRILA--RESLEELSNY 169
+ + V T+ +W ++ H + + RES+ EL+ Y
Sbjct: 118 YMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTH--QAMDDIRESVAELAYY 173
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 30.6 bits (70), Expect = 0.43
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
GI ++ + P G A + G+ ND ++ V+ K + M + + ++P
Sbjct: 245 GIVVNEVSPDGPAANAGIQV-NDLIISVD-----NKPAISALETM-----DQVAEIRP-G 292
Query: 63 QRANMSVPRRG 73
+ V R
Sbjct: 293 SVIPVVVMRDD 303
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 29.3 bits (65), Expect = 1.0
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQV 43
+ + A GL +D ++ + ++ + L +
Sbjct: 113 VWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSL 153
Score = 28.9 bits (64), Expect = 1.2
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILV 35
G + R+ GL D ++ +NG +
Sbjct: 17 GYHVLRVQENSPGHRAGLEPFFDFIVSINGSRL 49
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas,
admidas, membrane, integrin, titration, rossman fold,
cell adhesion, transmembrane; NMR {Mus musculus}
Length = 212
Score = 28.0 bits (62), Expect = 2.2
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 39 SLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSYSRTSQLSSDS 85
S+ Q+ + N+ I V + + +LS DS
Sbjct: 152 SVVQLASKLAENNIQPIFVVPSRMVKTYEKLTTFIPKLTIGELSDDS 198
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella
burnetii}
Length = 186
Score = 27.1 bits (59), Expect = 3.7
Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 41/178 (23%)
Query: 16 ESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSY 75
E TGL D ++E+ I+ + + +P M +
Sbjct: 17 EMTGLDPERDRIIEIATIVTNS-------HLDILAEGPAFAIHQPDKLLTAMDNWNTSHH 69
Query: 76 SRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPSTNSDIFERT---- 131
+ + + + ++ E + + + + + NS +R
Sbjct: 70 TASG--------LLERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSR 121
Query: 132 -----------KIVFVFTMLSKTTKWMSDM-------NGHALRILA--RESLEELSNY 169
+ + V T+ +W + + H L R+S+EEL Y
Sbjct: 122 YMPRLNQFFHYRHLDVTTLKILAQRWAPQIAAAHIKESQH--LALQDIRDSIEELRYY 177
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.362
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,390,339
Number of extensions: 186143
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 183
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.1 bits)