BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16076
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NAN2|PAR6_CAEEL Partitioning defective protein 6 OS=Caenorhabditis elegans GN=par-6
PE=1 SV=2
Length = 309
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 92/186 (49%), Gaps = 59/186 (31%)
Query: 22 YHKYNAFTLS----FDAEFRRFSVPKPDIS--TYNEFKILVEKLHHLDEIPFHLTYIATD 75
YH+ + TL FD+E+RRFS+P S +Y+ F+ LVEKLHHL+ + F L Y +T
Sbjct: 7 YHQNHHSTLQVKSKFDSEWRRFSIPMHSASGVSYDGFRSLVEKLHHLESVQFTLCYNSTG 66
Query: 76 GDLLPINNDSNLGKALLNS----------------------------------------- 94
GDLLPI ND NL K+ ++
Sbjct: 67 GDLLPITNDDNLRKSFESARPLLRLLIQRRGESWEEKYGYGTDSDKRWKGISSLMAQKPP 126
Query: 95 -----------FLRVSQIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGL 143
F +VS IIDVD+VPE RRVRL K ERPLGFYIRDGTS+RVT G+
Sbjct: 127 KRSYSISNPEDFRQVSAIIDVDIVPEAHRRVRLCKH-GQERPLGFYIRDGTSVRVTERGV 185
Query: 144 DKFLRI 149
K I
Sbjct: 186 VKVSGI 191
>sp|Q9NPB6|PAR6A_HUMAN Partitioning defective 6 homolog alpha OS=Homo sapiens GN=PARD6A
PE=1 SV=1
Length = 346
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 79/168 (47%), Gaps = 55/168 (32%)
Query: 32 FDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKAL 91
FDAEFRRF++P+ +S + EF L+ +H + + L Y GDLLP+ ND +L +AL
Sbjct: 22 FDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRAL 81
Query: 92 L-------------------------NSFLR----------------------------- 97
NS R
Sbjct: 82 ASGPPPLRLLVQKRAEADSSGLAFASNSLQRRKKGLLLRPVAPLRTRPPLLISLPQDFRQ 141
Query: 98 VSQIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDK 145
VS +IDVD++PET RRVRL K S+RPLGFYIRDG S+RV GL++
Sbjct: 142 VSSVIDVDLLPETHRRVRLHKH-GSDRPLGFYIRDGMSVRVAPQGLER 188
>sp|Q9JK84|PAR6G_MOUSE Partitioning defective 6 homolog gamma OS=Mus musculus GN=Pard6g
PE=2 SV=1
Length = 382
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 75/166 (45%), Gaps = 53/166 (31%)
Query: 32 FDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKAL 91
F AEFRRFS+ + + +F LV HH+ + Y GDLLPINND N KA+
Sbjct: 25 FGAEFRRFSLDRHKPGKFEDFYQLVVHTHHISNTEVTIGYADVHGDLLPINNDDNFCKAV 84
Query: 92 --LNSFLRV--------------------------------------------------S 99
N LRV S
Sbjct: 85 SSANPLLRVFIQKREEADHYSFGAGTLSRKKKVLVTLRDDGLRRRPHLNISMPHDFRPVS 144
Query: 100 QIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDK 145
IIDVD++PET RRVRL + E+PLGFYIRDGTS+RVT GL+K
Sbjct: 145 SIIDVDILPETHRRVRLYRH-GYEKPLGFYIRDGTSVRVTPHGLEK 189
>sp|Q9BYG5|PAR6B_HUMAN Partitioning defective 6 homolog beta OS=Homo sapiens GN=PARD6B
PE=1 SV=1
Length = 372
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 78/167 (46%), Gaps = 54/167 (32%)
Query: 32 FDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKAL 91
F AEFRRFS+ + + EF L++ +H + + + Y GDLLPINND N KA+
Sbjct: 23 FGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLVGYADIHGDLLPINNDDNYHKAV 82
Query: 92 --LNSFLR---------------------------------------------------V 98
N LR V
Sbjct: 83 STANPLLRIFIQKKEEADYSAFGTDTLIKKKNVLTNVLRPDNHRKKPHIVISMPQDFRPV 142
Query: 99 SQIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDK 145
S IIDVD++PET RRVRL K +E+PLGFYIRDG+S+RVT GL+K
Sbjct: 143 SSIIDVDILPETHRRVRLYKY-GTEKPLGFYIRDGSSVRVTPHGLEK 188
>sp|Q9JK83|PAR6B_MOUSE Partitioning defective 6 homolog beta OS=Mus musculus GN=Pard6b
PE=1 SV=2
Length = 371
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 80/167 (47%), Gaps = 54/167 (32%)
Query: 32 FDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKA- 90
F AEFRRFS+ + + EF L++ +H + + + Y GDLLPINND N KA
Sbjct: 23 FGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLVGYADIHGDLLPINNDDNYHKAV 82
Query: 91 --------------------------------LLNSFLR--------------------V 98
+L++ LR V
Sbjct: 83 STANPLLRIFIQKKEEADYSAFGTDTLIRKKNMLSNVLRPDNHRKKPHIVISMPQDFRPV 142
Query: 99 SQIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDK 145
S IIDVD++PET RRVRL K +E+PLGFYIRDG+S+RVT GL+K
Sbjct: 143 SSIIDVDILPETHRRVRLYKY-GTEKPLGFYIRDGSSVRVTPHGLEK 188
>sp|Q9BYG4|PAR6G_HUMAN Partitioning defective 6 homolog gamma OS=Homo sapiens GN=PARD6G
PE=1 SV=1
Length = 376
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 75/170 (44%), Gaps = 53/170 (31%)
Query: 32 FDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKAL 91
F AEFRRFS+ + + +F LV HH+ + Y GDLLPINND N KA+
Sbjct: 25 FGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDVTIGYADVHGDLLPINNDDNFCKAV 84
Query: 92 --LNSFLRV--------------------------------------------------S 99
N LRV S
Sbjct: 85 SSANPLLRVFIQKREEAERGSLGAGSLCRRRRALGALRDEGPRRRAHLDIGLPRDFRPVS 144
Query: 100 QIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRI 149
IIDVD+VPET RRVRL + E+PLGFYIRDG S+RVT GL+K I
Sbjct: 145 SIIDVDLVPETHRRVRLHRH-GCEKPLGFYIRDGASVRVTPHGLEKVPGI 193
>sp|Q9Z101|PAR6A_MOUSE Partitioning defective 6 homolog alpha OS=Mus musculus GN=Pard6a
PE=1 SV=2
Length = 346
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 55/168 (32%)
Query: 32 FDAEFRRFSVPKPDISTYNEFKILVEKLH--------------HLDEIPFH--------- 68
FDAEFRRF++P+ + + EF L+ +H H D +P
Sbjct: 22 FDAEFRRFALPRTSVRGFQEFSRLLCVVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRAL 81
Query: 69 ---------LTYIATDGD----------------------LLPINNDSNLGKALLNSFLR 97
L +GD + P+ L +L F +
Sbjct: 82 ASGPPPLRLLVQKRAEGDSSGLAFASNSLQRRKKGLLLRPVAPLRTRPPLLISLPQDFRQ 141
Query: 98 VSQIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDK 145
VS +IDVD++PET RRVRL K S+RPLGFYIRDG S+RV GL++
Sbjct: 142 VSSVIDVDLLPETHRRVRLHKH-GSDRPLGFYIRDGMSVRVAPQGLER 188
>sp|Q6B4M5|PAR6A_RAT Partitioning defective 6 homolog alpha OS=Rattus norvegicus
GN=Pard6a PE=2 SV=2
Length = 346
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 55/168 (32%)
Query: 32 FDAEFRRFSVPKPDISTYNEFKILVEKLH--------------HLDEIPFH--------- 68
FDAEFRRF++P+ + + EF L+ +H H D +P
Sbjct: 22 FDAEFRRFALPRTSVRGFQEFSRLLCVVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRAL 81
Query: 69 ---------LTYIATDGD----------------------LLPINNDSNLGKALLNSFLR 97
L +GD + P+ L +L F +
Sbjct: 82 ASGPPPLRLLVQKRAEGDSSGLAFASNSLQRRKKGLLLRPVAPLRTRPPLLISLPQDFRQ 141
Query: 98 VSQIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDK 145
VS +IDVD++PET RRVRL K S+RPLGFYIRDG S+RV GL++
Sbjct: 142 VSSVIDVDLLPETHRRVRLHKH-GSDRPLGFYIRDGMSVRVAPQGLER 188
>sp|Q3TUL7|DCA17_MOUSE DDB1- and CUL4-associated factor 17 OS=Mus musculus GN=Dcaf17 PE=2
SV=1
Length = 519
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157
CRR+ S R LGFY RD ++ T+ G+ + L STK+ N
Sbjct: 10 CRRL-------SRRALGFYARDAGVVQRTNLGILRALVCQESTKFKN 49
>sp|P26190|RDRP_ROTPC RNA-directed RNA polymerase OS=Rotavirus C (strain Pig/United
States/Cowden/1980) PE=3 SV=1
Length = 1082
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 7 KFISHYS-YPQGITTVYHKYNAFTLSFDAEFRRFSVPKPDISTY--------NEFKILVE 57
K I YS Y GI +Y N S F F+VPK D+ TY + FKIL
Sbjct: 926 KIIKQYSVYTPGIEELYEVVNKSIDSIRGYFASFNVPKADVDTYISTQMYKHDRFKILQA 985
Query: 58 KLHHLDEIPFHL 69
+++L + + +
Sbjct: 986 YIYNLLSVNYGM 997
>sp|B1H299|DCA17_RAT DDB1- and CUL4-associated factor 17 OS=Rattus norvegicus GN=Dcaf17
PE=2 SV=1
Length = 505
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 122 SERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157
S R LGFY RD ++ T+ G+ + L STK+ N
Sbjct: 14 SRRALGFYTRDAGVVQRTNLGILRALVCQESTKFKN 49
>sp|Q91E95|RDRP_ROTHC RNA-directed RNA polymerase OS=Rotavirus C (isolate Human/United
Kingdom/Bristol/1989) PE=3 SV=1
Length = 1090
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 7 KFISHYS-YPQGITTVYHKYNAFTLSFDAEFRRFSVPKPDISTY--------NEFKILVE 57
K I YS Y GI +Y N + F F+VPK D+ TY + FKIL
Sbjct: 934 KIIKQYSVYTPGIEELYEIVNKSVDTIRGYFASFNVPKADVDTYISTQMYKHDRFKILQA 993
Query: 58 KLHHLDEIPFHL 69
+++L + + +
Sbjct: 994 YIYNLLSVNYGM 1005
>sp|P0CN32|EFGM_CRYNJ Elongation factor G, mitochondrial OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=MEF1 PE=3 SV=1
Length = 811
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 29 TLSFDAEFRRFSVP------KPDISTYNEFKILVEKLHHLD------EIPFHLTYIATDG 76
T++ D + RR++VP K D + N F+++ + L ++P I ++
Sbjct: 227 TITVDRQMRRYNVPRLAFINKMDRAGSNPFRVIGQLRGKLKMNAAAVQVP-----IGSES 281
Query: 77 DLLPINNDSNLGKALLNSFLRVSQIIDVDVVPETCR 112
D + + + KA+ N ++ +QI++ D +PE+ R
Sbjct: 282 DFAGVVDIVRM-KAIYNEGVKGNQIVETDEIPESVR 316
>sp|P0CN33|EFGM_CRYNB Elongation factor G, mitochondrial OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=MEF1 PE=3 SV=1
Length = 811
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 29 TLSFDAEFRRFSVP------KPDISTYNEFKILVEKLHHLD------EIPFHLTYIATDG 76
T++ D + RR++VP K D + N F+++ + L ++P I ++
Sbjct: 227 TITVDRQMRRYNVPRLAFINKMDRAGSNPFRVIGQLRGKLKMNAAAVQVP-----IGSES 281
Query: 77 DLLPINNDSNLGKALLNSFLRVSQIIDVDVVPETCR 112
D + + + KA+ N ++ +QI++ D +PE+ R
Sbjct: 282 DFAGVVDIVRM-KAIYNEGVKGNQIVETDEIPESVR 316
>sp|A4J3P1|DER_DESRM GTPase Der OS=Desulfotomaculum reducens (strain MI-1) GN=der PE=3
SV=1
Length = 439
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 54 ILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKA-LLNSFLRVSQIIDVDVVPETCR 112
++ K+ H D+IP++ Y GD +P++ L LL+ ++ D D P
Sbjct: 116 LVANKVEHFDKIPYYDFYQLGLGDPVPVSAAEGLNTGDLLDELVKNLPAQDEDPYPPDTI 175
Query: 113 RVRLLKSPN 121
R+ ++ PN
Sbjct: 176 RIAVIGRPN 184
>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus
GN=LRP1 PE=2 SV=1
Length = 4543
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 16 QGITTVYHKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATD 75
G++ + N F S+D ++ +V + D S N ++K H L P H TD
Sbjct: 1659 HGLSVDWVSRNLFWTSYDTNKKQINVARLDGSFKNAVIQGLDKPHCLVVHPLHGKLYWTD 1718
Query: 76 GDLLPINNDSNLGKALL 92
GD + + N + LL
Sbjct: 1719 GDNISVANMDGSNRTLL 1735
>sp|C5GLJ6|AMP2B_AJEDR Methionine aminopeptidase 2 homolog BDCG_05228 OS=Ajellomyces
dermatitidis (strain ER-3 / ATCC MYA-2586) GN=BDCG_05228
PE=3 SV=1
Length = 464
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 31 SFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPF---HLTYIATDGDLLPINNDSNL 87
S++ E R +P + IL K+H ++PF H +GD+ I +
Sbjct: 296 SYEVELNRKIIPVKAVRNITGHNILRYKIHGDKQVPFVKTHTNQRMEEGDIFAIETFGST 355
Query: 88 GKALLN 93
GKA L+
Sbjct: 356 GKAYLD 361
>sp|C5JYZ5|AMP2B_AJEDS Methionine aminopeptidase 2 homolog BDBG_07768 OS=Ajellomyces
dermatitidis (strain SLH14081) GN=BDBG_07768 PE=3 SV=1
Length = 464
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 31 SFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPF---HLTYIATDGDLLPINNDSNL 87
S++ E R +P + IL K+H ++PF H +GD+ I +
Sbjct: 296 SYEVELNRKIIPVKAVRNITGHNILRYKIHGDKQVPFVKTHTNQRMEEGDIFAIETFGST 355
Query: 88 GKALLN 93
GKA L+
Sbjct: 356 GKAYLD 361
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,039,960
Number of Sequences: 539616
Number of extensions: 2427922
Number of successful extensions: 5092
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5061
Number of HSP's gapped (non-prelim): 30
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)