Query psy16076
Match_columns 161
No_of_seqs 59 out of 61
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 20:16:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3606|consensus 100.0 3.6E-79 7.9E-84 530.2 11.3 137 23-160 16-207 (358)
2 cd06403 PB1_Par6 The PB1 domai 100.0 7.5E-40 1.6E-44 238.7 6.9 69 26-94 1-69 (80)
3 cd06402 PB1_p62 The PB1 domain 99.5 5.2E-14 1.1E-18 103.6 7.0 62 33-94 13-75 (87)
4 cd06398 PB1_Joka2 The PB1 doma 99.3 7.2E-12 1.6E-16 92.1 7.4 69 26-94 1-73 (91)
5 smart00666 PB1 PB1 domain. Pho 99.2 3.6E-11 7.9E-16 82.4 7.0 67 26-94 2-68 (81)
6 PF00564 PB1: PB1 domain; Int 99.2 5.8E-11 1.3E-15 81.2 6.9 69 25-95 1-70 (84)
7 cd05992 PB1 The PB1 domain is 99.1 2.1E-10 4.5E-15 78.0 6.4 67 27-94 2-68 (81)
8 cd06397 PB1_UP1 Uncharacterize 98.7 5.9E-08 1.3E-12 71.8 7.4 68 27-96 2-69 (82)
9 cd06407 PB1_NLP A PB1 domain i 98.6 1.4E-07 3.1E-12 68.1 7.0 67 26-94 1-68 (82)
10 cd06401 PB1_TFG The PB1 domain 98.6 2.6E-07 5.6E-12 68.1 6.9 68 26-94 1-71 (81)
11 cd06396 PB1_NBR1 The PB1 domai 98.5 6.6E-07 1.4E-11 65.6 6.8 69 26-96 1-69 (81)
12 cd06404 PB1_aPKC PB1 domain is 97.9 4.4E-05 9.4E-10 56.6 6.9 66 26-93 1-67 (83)
13 cd06408 PB1_NoxR The PB1 domai 97.8 7.9E-05 1.7E-09 55.2 6.8 66 25-94 2-67 (86)
14 cd06409 PB1_MUG70 The MUG70 pr 95.6 0.035 7.5E-07 41.1 5.5 60 33-94 9-71 (86)
15 cd06406 PB1_P67 A PB1 domain i 95.3 0.045 9.6E-07 40.4 5.1 56 38-94 12-68 (80)
16 cd06410 PB1_UP2 Uncharacterize 90.0 1.4 3E-05 32.9 6.3 58 33-93 21-81 (97)
17 cd06399 PB1_P40 The PB1 domain 86.4 1.8 3.9E-05 33.0 5.0 50 43-94 24-73 (92)
18 cd06411 PB1_p51 The PB1 domain 82.6 3.4 7.3E-05 30.5 4.8 51 44-94 14-66 (78)
19 cd06405 PB1_Mekk2_3 The PB1 do 77.7 6 0.00013 29.5 4.8 63 26-94 1-63 (79)
20 KOG0695|consensus 72.2 9.8 0.00021 36.2 5.9 70 23-94 13-83 (593)
21 PF02309 AUX_IAA: AUX/IAA fami 67.7 1.7 3.7E-05 35.5 0.0 62 40-119 124-205 (215)
22 PF00595 PDZ: PDZ domain (Also 56.8 10 0.00023 25.3 2.3 35 113-157 1-35 (81)
23 PF14560 Ubiquitin_2: Ubiquiti 55.7 45 0.00097 23.2 5.4 45 37-85 18-62 (87)
24 PF00036 EF-hand_1: EF hand; 52.5 6.1 0.00013 23.3 0.5 24 36-59 6-29 (29)
25 KOG1596|consensus 50.9 10 0.00023 34.2 1.9 21 130-153 77-97 (317)
26 PF13833 EF-hand_8: EF-hand do 40.7 15 0.00033 22.8 1.0 28 32-59 27-54 (54)
27 PF06556 ASFV_p27: IAP-like pr 38.5 87 0.0019 25.1 5.2 61 31-93 41-116 (131)
28 cd06395 PB1_Map2k5 PB1 domain 37.6 72 0.0016 24.4 4.3 52 39-93 15-67 (91)
29 PF14452 Multi_ubiq: Multiubiq 34.5 26 0.00056 23.9 1.5 16 130-145 50-65 (72)
30 PF11205 DUF2987: Protein of u 33.5 82 0.0018 25.2 4.4 66 47-112 8-92 (148)
31 KOG0913|consensus 33.3 44 0.00095 29.5 3.0 23 20-45 93-115 (248)
32 PHA03022 hypothetical protein; 30.4 54 0.0012 29.6 3.1 53 100-152 129-196 (335)
33 PRK13836 conjugal transfer pro 29.2 29 0.00064 28.5 1.2 9 124-132 205-213 (220)
34 PF06004 DUF903: Bacterial pro 29.2 44 0.00095 22.6 1.8 18 68-85 26-43 (50)
35 PF06969 HemN_C: HemN C-termin 26.2 39 0.00085 22.0 1.2 17 127-143 49-65 (66)
36 PF05436 MF_alpha_N: Mating fa 26.0 39 0.00084 25.5 1.2 20 67-86 37-60 (86)
37 TIGR02236 recomb_radA DNA repa 24.7 1.3E+02 0.0029 25.2 4.3 40 98-144 270-309 (310)
38 cd07221 Pat_PNPLA3 Patatin-lik 24.3 3.3E+02 0.0071 23.0 6.6 36 59-94 99-138 (252)
39 PF03012 PP_M1: Phosphoprotein 23.8 26 0.00057 31.6 0.0 22 100-121 42-63 (298)
40 PF12108 SF3a60_bindingd: Spli 23.8 58 0.0013 19.9 1.5 15 45-59 5-19 (28)
41 cd04486 YhcR_OBF_like YhcR_OBF 23.7 84 0.0018 22.1 2.6 9 125-133 15-23 (78)
42 PF09967 DUF2201: VWA-like dom 22.6 2.9E+02 0.0062 20.8 5.5 47 32-80 52-98 (126)
43 PF06668 ITI_HC_C: Inter-alpha 22.3 58 0.0013 26.9 1.7 18 118-135 101-118 (188)
44 cd01123 Rad51_DMC1_radA Rad51_ 20.8 1.8E+02 0.0038 22.8 4.1 29 109-144 207-235 (235)
45 PF00659 POLO_box: POLO box du 20.7 94 0.002 20.7 2.2 22 122-143 12-33 (68)
46 COG0442 ProS Prolyl-tRNA synth 20.5 40 0.00087 32.0 0.5 23 24-46 131-154 (500)
47 cd00992 PDZ_signaling PDZ doma 20.4 1.7E+02 0.0036 18.9 3.4 22 112-135 2-23 (82)
48 cd00136 PDZ PDZ domain, also c 20.3 1.1E+02 0.0025 19.3 2.5 12 124-135 1-12 (70)
49 PF09890 DUF2117: Uncharacteri 20.2 3.7E+02 0.008 23.3 6.2 80 67-149 34-148 (215)
50 smart00228 PDZ Domain present 20.0 1.4E+02 0.0031 19.0 3.0 33 113-157 4-36 (85)
No 1
>KOG3606|consensus
Probab=100.00 E-value=3.6e-79 Score=530.23 Aligned_cols=137 Identities=55% Similarity=0.818 Sum_probs=134.8
Q ss_pred cceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhc--------
Q psy16076 23 HKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS-------- 94 (161)
Q Consensus 23 ~~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa-------- 94 (161)
+++|||||||||||||||++|+++++|+|||+||+++|+|+|+||+|+|+|+|||||||||||||+||++||
T Consensus 16 ~~~veVKSKFdaEfRRfsl~r~~~~~f~~F~~Lv~~~H~i~nvdvllgY~d~hgDLLPinNDDn~~ka~~sa~PlLR~~i 95 (358)
T KOG3606|consen 16 SSTVEVKSKFDAEFRRFSLPRHSASSFDEFYSLVEHLHHIPNVDVLLGYADTHGDLLPINNDDNLHKALSSARPLLRLLI 95 (358)
T ss_pred cceEEeeccccchhheecccccCcccHHHHHHHHHHHhcCCCceEEEEEecCCCceecccCchhHHHHhhccCchhhhhh
Confidence 459999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -----------------------------------------------ccccceEEEeeccccccceeeeccCCCCCCcee
Q psy16076 95 -----------------------------------------------FLRVSQIIDVDVVPETCRRVRLLKSPNSERPLG 127 (161)
Q Consensus 95 -----------------------------------------------FR~VSaIiDVDilPeT~RRVrL~k~pgsdkpLG 127 (161)
||||||||||||+|||||||||||| |||||||
T Consensus 96 Qkr~ea~~~~~~fgt~sl~rr~~gl~~~lr~~~p~rr~~~~Is~P~DFRqVSsIIDVDivPEtHRRVRL~kh-G~ekPLG 174 (358)
T KOG3606|consen 96 QKREEADEEKYGFGTDSLQRRKKGLSSLLRPKPPKRRPHLSISLPQDFRQVSSIIDVDIVPETHRRVRLHKH-GSEKPLG 174 (358)
T ss_pred hhhhhhhhhccCcccccHHHHhHhhHhhhcCCCCccCCCccccCccccceeceeeeecccchhhhheehhhc-CCCCCce
Confidence 9999999999999999999999999 9999999
Q ss_pred EEEeeCceeEecCCccccccceEEEeeeecCcC
Q psy16076 128 FYIRDGTSLRVTSTGLDKFLRISSSTKYINDLT 160 (161)
Q Consensus 128 FYIRdGtSvRvt~~GlEKvPGiFISrlV~~~~~ 160 (161)
||||||+||||||+||||||||||||||=|||.
T Consensus 175 FYIRDG~SVRVtp~GlekvpGIFISRlVpGGLA 207 (358)
T KOG3606|consen 175 FYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLA 207 (358)
T ss_pred EEEecCceEEeccccccccCceEEEeecCCccc
Confidence 999999999999999999999999999999985
No 2
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=100.00 E-value=7.5e-40 Score=238.66 Aligned_cols=69 Identities=43% Similarity=0.736 Sum_probs=68.3
Q ss_pred eEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 26 NAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 26 veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
||||||||||||||||+|+++++|||||+||+++|+|+|++|+|||||+|||||||||||||+||++||
T Consensus 1 veVKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa 69 (80)
T cd06403 1 VEVKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGDLLPINNDDNFLKALSSA 69 (80)
T ss_pred CceecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCCEecccCcHHHHHHHHcC
Confidence 699999999999999999999999999999999999999999999999999999999999999999998
No 3
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.50 E-value=5.2e-14 Score=103.61 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=59.6
Q ss_pred cceeeeeccCCCCCcchHHHHHHHHhh-ccCCCCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 33 DAEFRRFSVPKPDISTYNEFKILVEKL-HHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 33 dAEFRRFsl~r~~~~~feeF~~Ll~~l-H~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
++|+|||+++.....+|++|+..|+.+ +++.+.+|+|.|.|.+||+++|++|++|..|++++
T Consensus 13 ~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~ 75 (87)
T cd06402 13 NAEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSL 75 (87)
T ss_pred ccceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcC
Confidence 689999999999999999999999998 78999999999999999999999999999999986
No 4
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=99.31 E-value=7.2e-12 Score=92.08 Aligned_cols=69 Identities=25% Similarity=0.413 Sum_probs=63.6
Q ss_pred eEEeecccceeeeeccCCC---CCcchHHHHHHHHhhccCCC-CCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 26 NAFTLSFDAEFRRFSVPKP---DISTYNEFKILVEKLHHLDE-IPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 26 veVKSKFdAEFRRFsl~r~---~~~~feeF~~Ll~~lH~L~~-vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
+-||.+|+.|.|||+++.. ...+|++++..|+++++|+. .+|.|.|.|.+||+.+|.+|++|..|++.+
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred CEEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHH
Confidence 3589999999999999875 34799999999999999987 799999999999999999999999999985
No 5
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.23 E-value=3.6e-11 Score=82.41 Aligned_cols=67 Identities=31% Similarity=0.538 Sum_probs=63.2
Q ss_pred eEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 26 NAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 26 veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
+.||..|++|.|||++++ ..+|+|++..|.+...+....+.|.|.|.+||+.+|++|+++..|++.+
T Consensus 2 ~~vK~~~~~~~~~~~~~~--~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~ 68 (81)
T smart00666 2 VDVKLRYGGETRRLSVPR--DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEY 68 (81)
T ss_pred ccEEEEECCEEEEEEECC--CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHH
Confidence 568999999999999987 5899999999999999988899999999999999999999999999976
No 6
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.20 E-value=5.8e-11 Score=81.23 Aligned_cols=69 Identities=23% Similarity=0.470 Sum_probs=63.8
Q ss_pred eeEEeecccceeee-eccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhcc
Q psy16076 25 YNAFTLSFDAEFRR-FSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNSF 95 (161)
Q Consensus 25 ~veVKSKFdAEFRR-Fsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~saF 95 (161)
.+.||..|+.|.|| +++++. .+|++++..|+....+.+.+|.|.|.|.+||+.+|++|+++..|++.+-
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~--~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~ 70 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSD--VSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK 70 (84)
T ss_dssp SEEEEEEETTEEEEEEEECST--SHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEEECCeeEEEEEcCCC--CCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence 36799999999999 777776 4999999999999999999999999999999999999999999999873
No 7
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.11 E-value=2.1e-10 Score=78.04 Aligned_cols=67 Identities=27% Similarity=0.543 Sum_probs=62.9
Q ss_pred EEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 27 AFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 27 eVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
.||..|.+|.|||.++. ...+|++++..|.....+....+.|.|.|.+||+.||++|+++..|++.+
T Consensus 2 ~vK~~~~~~~~~~~~~~-~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~ 68 (81)
T cd05992 2 RVKVKYGGEIRRFVVVS-RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEA 68 (81)
T ss_pred cEEEEecCCCEEEEEec-CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHH
Confidence 58999999999999996 45899999999999999988899999999999999999999999999886
No 8
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=98.71 E-value=5.9e-08 Score=71.78 Aligned_cols=68 Identities=29% Similarity=0.424 Sum_probs=63.2
Q ss_pred EEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhccc
Q psy16076 27 AFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNSFL 96 (161)
Q Consensus 27 eVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~saFR 96 (161)
+.|.||+.+.|||+++. .++|.+....|+.+-+|+.+.|.|+|+|.|||..-|+.|+.+..|.+-+-+
T Consensus 2 ~fKv~~~g~~RRf~~~~--~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~~~~~~ 69 (82)
T cd06397 2 QFKSSFLGDTRRIVFPD--IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFYRLSHR 69 (82)
T ss_pred eEEEEeCCceEEEecCC--CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHHHhccc
Confidence 57999999999999887 799999999999999999999999999999999999999999999885544
No 9
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=98.62 E-value=1.4e-07 Score=68.06 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=61.8
Q ss_pred eEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCC-CCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 26 NAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDE-IPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 26 veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~-vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
+-||-.|+.|.+||.|+.+ .+|++++..|...-.+.+ -+|+|.|.|.+||..+|.+|..|..|+.-+
T Consensus 1 ~~vK~~~~~d~~r~~l~~~--~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~ 68 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPS--WGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVY 68 (82)
T ss_pred CEEEEEeCCeEEEEEcCCC--CCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHH
Confidence 4699999999999999986 589999999999999987 699999999999999999999999998754
No 10
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=98.55 E-value=2.6e-07 Score=68.05 Aligned_cols=68 Identities=22% Similarity=0.367 Sum_probs=60.0
Q ss_pred eEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCC---CCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 26 NAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDE---IPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 26 veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~---vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
+-+|.-|+++.||++++. +.-+|.|-...|+++-...- .+|+|-|-|.+|||.+|+.++.+..|++++
T Consensus 1 ~iiK~~~g~DiR~~~~~~-~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~ 71 (81)
T cd06401 1 LILKAQLGDDIRRIPIHN-EDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCS 71 (81)
T ss_pred CeEEEEeCCeEEEEeccC-ccccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHHHhcC
Confidence 358999999999999998 35799999999988777543 489999999999999999999999998886
No 11
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=98.45 E-value=6.6e-07 Score=65.56 Aligned_cols=69 Identities=14% Similarity=0.358 Sum_probs=64.7
Q ss_pred eEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhccc
Q psy16076 26 NAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNSFL 96 (161)
Q Consensus 26 veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~saFR 96 (161)
|-||-.|+.|.+||.++.+...+|+++...|...=.|+ +|.|-|.|.+||..-|+.|..+..|+..+=|
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~v~lssd~eLeE~~rl~~~ 69 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEEVSVNSQGEYEEALKSAVR 69 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCEEEEEchhhHHHHHHHHHh
Confidence 46899999999999999987789999999999999999 9999999999999999999999999988744
No 12
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=97.92 E-value=4.4e-05 Score=56.61 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=60.9
Q ss_pred eEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCC-CeEEEEecCCCCceeccCccchHHHHhh
Q psy16076 26 NAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEI-PFHLTYIATDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 26 veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~v-df~I~YtD~~GDLLPINNDDNf~kAl~s 93 (161)
+.||..|..+.++++++. ..+|+++...++.+=.+... +|++-|.|.+||+.-|..|+.+..|+.-
T Consensus 1 i~~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl 67 (83)
T cd06404 1 VRVKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRL 67 (83)
T ss_pred CeEEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHH
Confidence 468999999999999999 48899999999999988886 9999999999999999999999999763
No 13
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=97.82 E-value=7.9e-05 Score=55.24 Aligned_cols=66 Identities=9% Similarity=0.212 Sum_probs=60.0
Q ss_pred eeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 25 YNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 25 ~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
.+.||-.|..+.|=..++.+ ..|++|+.-|...=.+. -+|+|.|.|. ||..+|.+++.|..|+++|
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~--i~f~dL~~kIrdkf~~~-~~~~iKykDE-GD~iti~sq~DLd~Ai~~a 67 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPD--TGFADFEDKIRDKFGFK-RRLKIKMKDD-GDMITMGDQDDLDMAIDTA 67 (86)
T ss_pred cEEEEEEecCcEEEEEcCCC--CCHHHHHHHHHHHhCCC-CceEEEEEcC-CCCccccCHHHHHHHHHHH
Confidence 46799999999888888776 67999999999998886 4999999998 9999999999999999998
No 14
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.62 E-value=0.035 Score=41.13 Aligned_cols=60 Identities=25% Similarity=0.475 Sum_probs=51.9
Q ss_pred cceeeeeccCCCCCcchHHHHHHHHhhccCCC---CCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 33 DAEFRRFSVPKPDISTYNEFKILVEKLHHLDE---IPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 33 dAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~---vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
....-||.+..+ .++++....|.+-=.+.. -.|.|.|.|.+||..=|..|..+..|+.-|
T Consensus 9 ~GrvhRf~~~~s--~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~ia 71 (86)
T cd06409 9 KGRVHRFRLRPS--ESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVA 71 (86)
T ss_pred CCCEEEEEecCC--CCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHH
Confidence 445679999875 489999998888777776 489999999999999999999999999876
No 15
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.29 E-value=0.045 Score=40.36 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=48.4
Q ss_pred eeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEec-CCCCceeccCccchHHHHhhc
Q psy16076 38 RFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIA-TDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 38 RFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD-~~GDLLPINNDDNf~kAl~sa 94 (161)
=+.|.-..-.+|.+-+..|..-=.|++....++|.| +.|++.|+ ||+++..|.+.+
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l-~d~dle~aws~~ 68 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVIL-SDTNMEDVWSQA 68 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCc-ChHHHHHHHHhh
Confidence 556666666899999999999889988899999999 66999898 999999999865
No 16
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=89.97 E-value=1.4 Score=32.95 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=46.4
Q ss_pred cceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecC--CCC-ceeccCccchHHHHhh
Q psy16076 33 DAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIAT--DGD-LLPINNDSNLGKALLN 93 (161)
Q Consensus 33 dAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~--~GD-LLPINNDDNf~kAl~s 93 (161)
+.|-|--+++|. .+|.||.+-|..+=..... +.+.|+=| +-| |.++.+|+++..-++-
T Consensus 21 GG~tr~i~V~r~--~s~~el~~kl~~~~~~~~~-~~lky~Lp~edld~Lisv~~DeDl~~M~~e 81 (97)
T cd06410 21 GGETRIVSVDRS--ISFKELVSKLSELFGAGVV-VTLKYQLPDEDLDALISVSNDEDLKNMMEE 81 (97)
T ss_pred CCceEEEEEcCC--CCHHHHHHHHHHHhCCCCc-eEEEEEcCCCCcceeEEecCcHHHHHHHHh
Confidence 678888999998 7999999888877655544 89999843 345 9999999999976654
No 17
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=86.44 E-value=1.8 Score=33.03 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=41.4
Q ss_pred CCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 43 KPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 43 r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
-...++|+|...|+++.- +..|+.+-|.|.+|||.=|=.|++..--+.-|
T Consensus 24 l~~~P~~kdLl~lmr~~f--~~~dIaLNYrD~EGDLIRllddeDv~LMV~~~ 73 (92)
T cd06399 24 LSSTPLLKDLLELTRREF--QREDIALNYRDAEGDLIRLLSDEDVALMVRQS 73 (92)
T ss_pred cccCccHHHHHHHHHHHh--chhheeeeeecCCCCEEEEcchhhHHHHHHHH
Confidence 355789999999998754 44589999999999999999999988666655
No 18
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=82.57 E-value=3.4 Score=30.48 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=42.0
Q ss_pred CCCcchHHHHHHHHhhccCCCCCeEEEEecCC-C-CceeccCccchHHHHhhc
Q psy16076 44 PDISTYNEFKILVEKLHHLDEIPFHLTYIATD-G-DLLPINNDSNLGKALLNS 94 (161)
Q Consensus 44 ~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~-G-DLLPINNDDNf~kAl~sa 94 (161)
..-..|-++..+|.+==.+..--..++|.+++ + .+.||+.++|+.+|-+.+
T Consensus 14 ~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v 66 (78)
T cd06411 14 PRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQDV 66 (78)
T ss_pred cCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHHhc
Confidence 34468999999998877788788999999955 3 799999999999987653
No 19
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=77.70 E-value=6 Score=29.51 Aligned_cols=63 Identities=19% Similarity=0.364 Sum_probs=49.3
Q ss_pred eEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 26 NAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 26 veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
+.||=-|..|=|=+.+.| |.+|+|... +.-.--+-+..+.||... =++||.|-+++.||+...
T Consensus 1 vRiKfE~~gEKRIi~f~R--Pvkf~dl~~---kv~~afGq~mdl~ytn~e-L~iPl~~Q~DLDkAie~l 63 (79)
T cd06405 1 VRIKFEHNGEKRIIQFPR--PVKFKDLQQ---KVTTAFGQPMDLHYTNNE-LLIPLKNQEDLDRAIELL 63 (79)
T ss_pred CeEEEEecCceEEEecCC--CccHHHHHH---HHHHHhCCeeeEEEeccc-EEEeccCHHHHHHHHHHH
Confidence 358888899988888887 488888665 333445567889999944 889999999999999753
No 20
>KOG0695|consensus
Probab=72.22 E-value=9.8 Score=36.18 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=56.5
Q ss_pred cceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCC-CeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 23 HKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEI-PFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 23 ~~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~v-df~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
+.-+.+|..|..+.==-+.+ .+..||+|+.+++-+-.+.+- ++++-++|.+||-..|..-=.+.+|+.-+
T Consensus 13 ~~~vrlka~y~g~i~i~~~~--p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~ 83 (593)
T KOG0695|consen 13 GGRVRLKAHYGGDIFITSVD--PATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLA 83 (593)
T ss_pred CccEEEEEeecCcEEEEecc--CcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHH
Confidence 45688999999887544444 458999999999988887776 89999999999988888877777777654
No 21
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=67.72 E-value=1.7 Score=35.53 Aligned_cols=62 Identities=23% Similarity=0.439 Sum_probs=0.0
Q ss_pred ccCCCCCcchHHHHHHHHhhc---cCC-----------------CCCeEEEEecCCCCceeccCccchHHHHhhcccccc
Q psy16076 40 SVPKPDISTYNEFKILVEKLH---HLD-----------------EIPFHLTYIATDGDLLPINNDSNLGKALLNSFLRVS 99 (161)
Q Consensus 40 sl~r~~~~~feeF~~Ll~~lH---~L~-----------------~vdf~I~YtD~~GDLLPINNDDNf~kAl~saFR~VS 99 (161)
.||.....+|++.+.-|+++= .+. ..++.|.|+|.+||+|-.-. +-+..-
T Consensus 124 kVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD-~PW~~F--------- 193 (215)
T PF02309_consen 124 KVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGD-VPWEEF--------- 193 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecC-CCHHHH---------
Confidence 455566678888888888877 443 23689999999999998543 333311
Q ss_pred eEEEeeccccccceeeeccC
Q psy16076 100 QIIDVDVVPETCRRVRLLKS 119 (161)
Q Consensus 100 aIiDVDilPeT~RRVrL~k~ 119 (161)
=+|.||.|++|.
T Consensus 194 --------~~~vkRl~I~~~ 205 (215)
T PF02309_consen 194 --------VKSVKRLRIMKS 205 (215)
T ss_dssp --------------------
T ss_pred --------HHHhhccEEecH
Confidence 147888888887
No 22
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=56.82 E-value=10 Score=25.31 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=25.0
Q ss_pred eeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 113 RVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 113 RVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+|+|.|. .+.+|||-++.|..-. .+|+||+...-|
T Consensus 1 ~v~l~k~--~~~~lG~~l~~~~~~~--------~~~~~V~~v~~~ 35 (81)
T PF00595_consen 1 QVTLEKS--GNGPLGFTLRGGSDND--------EKGVFVSSVVPG 35 (81)
T ss_dssp EEEEEES--TTSBSSEEEEEESTSS--------SEEEEEEEECTT
T ss_pred CEEEEeC--CCCCcCEEEEecCCCC--------cCCEEEEEEeCC
Confidence 3677776 5699999999875432 578888776544
No 23
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=55.65 E-value=45 Score=23.24 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=32.0
Q ss_pred eeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCcc
Q psy16076 37 RRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDS 85 (161)
Q Consensus 37 RRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDD 85 (161)
|||+. -.+..|+...|+.+..++.-...+.|-+.+++-.+...||
T Consensus 18 kr~~~----~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~d 62 (87)
T PF14560_consen 18 KRFPK----SITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDD 62 (87)
T ss_dssp EEEET----TSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSG
T ss_pred EEcCC----CCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCC
Confidence 56654 4678999999999999999999999996444444433333
No 24
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=52.46 E-value=6.1 Score=23.29 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.3
Q ss_pred eeeeccCCCCCcchHHHHHHHHhh
Q psy16076 36 FRRFSVPKPDISTYNEFKILVEKL 59 (161)
Q Consensus 36 FRRFsl~r~~~~~feeF~~Ll~~l 59 (161)
|+.|-.+..+..+|+||...+.+|
T Consensus 6 F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 6 FREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHCCCCCCcCCHHHHHHHHHhC
Confidence 667777888889999999998865
No 25
>KOG1596|consensus
Probab=50.91 E-value=10 Score=34.16 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=20.1
Q ss_pred EeeCceeEecCCccccccceEEEe
Q psy16076 130 IRDGTSLRVTSTGLDKFLRISSST 153 (161)
Q Consensus 130 IRdGtSvRvt~~GlEKvPGiFISr 153 (161)
|+-|++|+|+|| +.+|+||+|
T Consensus 77 ~~gG~~v~vEPH---Rh~GVfi~r 97 (317)
T KOG1596|consen 77 IKGGSKVLVEPH---RHAGVFIAR 97 (317)
T ss_pred ccCCceEEeccc---cccceEEEc
Confidence 899999999999 889999998
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=40.70 E-value=15 Score=22.79 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=22.6
Q ss_pred ccceeeeeccCCCCCcchHHHHHHHHhh
Q psy16076 32 FDAEFRRFSVPKPDISTYNEFKILVEKL 59 (161)
Q Consensus 32 FdAEFRRFsl~r~~~~~feeF~~Ll~~l 59 (161)
.+.=|+.|-.+..+..+|+||..+++++
T Consensus 27 ~~~l~~~~D~~~~G~I~~~EF~~~~~~~ 54 (54)
T PF13833_consen 27 VDRLFREFDTDGDGYISFDEFISMMQRR 54 (54)
T ss_dssp HHHHHHHHTTSSSSSEEHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCCCHHHHHHHHHhC
Confidence 4445778888899999999999988763
No 27
>PF06556 ASFV_p27: IAP-like protein p27 C-terminus; InterPro: IPR010549 This entry represents the C-terminal region of the African swine fever virus (ASFV) IAP-like protein p27. This domain is found in conjunction with IPR001370 from INTERPRO. It has been suggested that the domain may be incoded by the gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros [].
Probab=38.54 E-value=87 Score=25.09 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=41.3
Q ss_pred cccceeeeeccCCCCCcchHHHHHH---------------HHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhh
Q psy16076 31 SFDAEFRRFSVPKPDISTYNEFKIL---------------VEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 31 KFdAEFRRFsl~r~~~~~feeF~~L---------------l~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~s 93 (161)
+|..-|-||-|+-.=.+.|..|..- |.+.|...- |=.-.|-=. --.-|||.|+||+.|-.|
T Consensus 41 gfsK~fmrFiLaNafiPpyrkyihKiiLNEryFtFkf~ayLlsfhkvnl-dnqttycmt-cgie~i~kdenfc~ackt 116 (131)
T PF06556_consen 41 GFSKCFMRFILANAFIPPYRKYIHKIILNERYFTFKFNAYLLSFHKVNL-DNQTTYCMT-CGIEQINKDENFCNACKT 116 (131)
T ss_pred CCCcceEEEEeecccCCcHHHHHHHHhhccceEEEehhhhhhhheeecc-CCceEEEEe-eCceecccchhhhhhhcc
Confidence 7899999999999888889888653 334444322 211222221 246799999999988765
No 28
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=37.57 E-value=72 Score=24.40 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=40.0
Q ss_pred eccCCCCCcchHHHHHHHHhhccCCCC-CeEEEEecCCCCceeccCccchHHHHhh
Q psy16076 39 FSVPKPDISTYNEFKILVEKLHHLDEI-PFHLTYIATDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 39 Fsl~r~~~~~feeF~~Ll~~lH~L~~v-df~I~YtD~~GDLLPINNDDNf~kAl~s 93 (161)
|+++.....+|.|....|.+. +++. .-.+.|-|.+||-+-...||.++ |..|
T Consensus 15 w~V~~~~~L~F~DvL~~I~~v--lp~aT~tAFeYEDE~gDRITVRSDeEm~-AMls 67 (91)
T cd06395 15 WTVQSGPQLLFRDVLDVIGQV--LPEATTTAFEYEDEDGDRITVRSDEEMK-AMLS 67 (91)
T ss_pred ccccCcccccHHHHHHHHHHh--cccccccceeeccccCCeeEecchHHHH-HHHH
Confidence 566666668899988877765 3333 55689999999999999999998 5544
No 29
>PF14452 Multi_ubiq: Multiubiquitin
Probab=34.48 E-value=26 Score=23.86 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=14.9
Q ss_pred EeeCceeEecCCcccc
Q psy16076 130 IRDGTSLRVTSTGLDK 145 (161)
Q Consensus 130 IRdGtSvRvt~~GlEK 145 (161)
|++|.+|.++..|.|+
T Consensus 50 i~~~e~Vdl~~~G~e~ 65 (72)
T PF14452_consen 50 IRPGESVDLRKPGMEF 65 (72)
T ss_pred eCCCCEEEECCCCeEE
Confidence 6899999999999997
No 30
>PF11205 DUF2987: Protein of unknown function (DUF2987); InterPro: IPR021370 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=33.51 E-value=82 Score=25.17 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=45.1
Q ss_pred cchHHHHHHHHhhccCCCCCeE--EEEecCC-CC----------------ceeccCccchHHHHhhcccccceEEEeecc
Q psy16076 47 STYNEFKILVEKLHHLDEIPFH--LTYIATD-GD----------------LLPINNDSNLGKALLNSFLRVSQIIDVDVV 107 (161)
Q Consensus 47 ~~feeF~~Ll~~lH~L~~vdf~--I~YtD~~-GD----------------LLPINNDDNf~kAl~saFR~VSaIiDVDil 107 (161)
..|..||..|...-+-.-.++. ++..|.+ |- -|||..|..|.=-+..+.|.--|.|-|++.
T Consensus 8 ~~Ys~fY~~lK~~~k~~~~~v~~af~~~~~~~~~~C~I~~a~i~te~~~~pL~i~~~~el~lP~d~~Lk~~~a~V~v~~~ 87 (148)
T PF11205_consen 8 LEYSGFYSRLKQVNKEDYSDVKVAFFLPDAQTGQACQIKKAWIETEKHYEPLTITADGELFLPFDKQLKSANALVNVDLT 87 (148)
T ss_pred eeHHHHHHHHhhhccCCCccEEEEEEEEcCCCCccceEEEEEEEEcCceEEeccCCCCeEeCcchHHHhhcCCeEEEEcc
Confidence 4799999999887766555444 4445533 22 366666666655555567778899999988
Q ss_pred ccccc
Q psy16076 108 PETCR 112 (161)
Q Consensus 108 PeT~R 112 (161)
|+.++
T Consensus 88 ~~~~~ 92 (148)
T PF11205_consen 88 PDAEQ 92 (148)
T ss_pred CCccc
Confidence 77655
No 31
>KOG0913|consensus
Probab=33.26 E-value=44 Score=29.53 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=17.2
Q ss_pred eeecceeEEeecccceeeeeccCCCC
Q psy16076 20 TVYHKYNAFTLSFDAEFRRFSVPKPD 45 (161)
Q Consensus 20 ~~~~~~veVKSKFdAEFRRFsl~r~~ 45 (161)
|+++..-||| |.||||||=.|.+
T Consensus 93 taLptIYHvk---DGeFrrysgaRdk 115 (248)
T KOG0913|consen 93 TALPTIYHVK---DGEFRRYSGARDK 115 (248)
T ss_pred EecceEEEee---ccccccccCcccc
Confidence 3445555665 9999999998876
No 32
>PHA03022 hypothetical protein; Provisional
Probab=30.41 E-value=54 Score=29.55 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=37.5
Q ss_pred eEEEeeccccccc-------eeeeccCCCCCCceeEEEeeCc--------eeEecCCccccccceEEE
Q psy16076 100 QIIDVDVVPETCR-------RVRLLKSPNSERPLGFYIRDGT--------SLRVTSTGLDKFLRISSS 152 (161)
Q Consensus 100 aIiDVDilPeT~R-------RVrL~k~pgsdkpLGFYIRdGt--------SvRvt~~GlEKvPGiFIS 152 (161)
|+..||+.|.-.- .+.|-||-..+-.+|+-+-|.- -.|+.|+|..|+-.||=-
T Consensus 129 s~~~i~~~~~ind~d~iisdkl~~k~hdsg~~~i~y~~~d~ft~~~dn~yky~idpn~yn~~~~ifki 196 (335)
T PHA03022 129 SAENIDDEPDINDTDKIISDKLELKKHDSGDLNIGYMAHDKFTLNKDNEYKYMIDPNGYNKTAAIFKI 196 (335)
T ss_pred hhhcCCCCcccchhHHHHHHHHhhccccCCccceeEEEecceEEecCCeeEEEeCCccccceeEEEEE
Confidence 6667777665332 2457788666888999666543 358899999999999853
No 33
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=29.24 E-value=29 Score=28.48 Aligned_cols=9 Identities=56% Similarity=1.453 Sum_probs=8.0
Q ss_pred CceeEEEee
Q psy16076 124 RPLGFYIRD 132 (161)
Q Consensus 124 kpLGFYIRd 132 (161)
-||||||.|
T Consensus 205 NPLGf~Vt~ 213 (220)
T PRK13836 205 NPIGLYLRD 213 (220)
T ss_pred CCCeEEEee
Confidence 499999987
No 34
>PF06004 DUF903: Bacterial protein of unknown function (DUF903); InterPro: IPR010305 This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.; PDB: 2RB6_B 3BDU_F 2RA2_F 2RD1_C 3FIF_H 2JN0_A 2K57_A.
Probab=29.20 E-value=44 Score=22.62 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.4
Q ss_pred EEEEecCCCCceeccCcc
Q psy16076 68 HLTYIATDGDLLPINNDS 85 (161)
Q Consensus 68 ~I~YtD~~GDLLPINNDD 85 (161)
+++|+|.+|.-.=||.||
T Consensus 26 ~~~y~D~~G~~~qIn~d~ 43 (50)
T PF06004_consen 26 MYSYTDADGKEQQINKDD 43 (50)
T ss_dssp EEEEEBTTS-EEEEEGGG
T ss_pred cEEEECCCCCEEEEchHH
Confidence 589999999999999886
No 35
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=26.23 E-value=39 Score=21.97 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=13.2
Q ss_pred eEEEeeCceeEecCCcc
Q psy16076 127 GFYIRDGTSLRVTSTGL 143 (161)
Q Consensus 127 GFYIRdGtSvRvt~~Gl 143 (161)
|+-..+|..+|+|+.|.
T Consensus 49 Gll~~~~~~l~lT~~G~ 65 (66)
T PF06969_consen 49 GLLEIDGGRLRLTEKGR 65 (66)
T ss_dssp TSEEE-SSEEEE-TTTG
T ss_pred CCEEEeCCEEEECcccC
Confidence 77889999999999985
No 36
>PF05436 MF_alpha_N: Mating factor alpha precursor N-terminus; InterPro: IPR008675 This entry contains the N-terminal regions of the Saccharomyces mating factor alpha precursor protein. All proteins in this family contain one or more copies of IPR006742 from INTERPRO further toward their C terminus.; GO: 0007618 mating, 0005576 extracellular region
Probab=26.00 E-value=39 Score=25.46 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=17.1
Q ss_pred eEEEEecCCCC----ceeccCccc
Q psy16076 67 FHLTYIATDGD----LLPINNDSN 86 (161)
Q Consensus 67 f~I~YtD~~GD----LLPINNDDN 86 (161)
-.|+|-|-.|| +||+.|-.+
T Consensus 37 AiiGyLDl~~d~Dva~lP~sN~T~ 60 (86)
T PF05436_consen 37 AIIGYLDLGGDNDVALLPFSNSTH 60 (86)
T ss_pred HHhceeccCCCCceEEEEeecCCc
Confidence 56999998888 999998765
No 37
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=24.74 E-value=1.3e+02 Score=25.21 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=27.4
Q ss_pred cceEEEeeccccccceeeeccCCCCCCceeEEEeeCceeEecCCccc
Q psy16076 98 VSQIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLD 144 (161)
Q Consensus 98 VSaIiDVDilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlE 144 (161)
++..+.++=..+..|+.++.|+|. .|-|-. .+++|+.|++
T Consensus 270 ~~~rl~l~~~~~~~R~~~~~k~~~--~~~~~~-----~f~i~~~Gi~ 309 (310)
T TIGR02236 270 ATFRVYLRKGKGDKRIARLVDSPH--LPEGEA-----VFRITEKGIE 309 (310)
T ss_pred eeEEEEEEecCCCeEEEEEEECCC--CCCeeE-----EEEEeCCCcc
Confidence 344455553345689999999975 565653 3888999875
No 38
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=24.31 E-value=3.3e+02 Score=23.05 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=28.0
Q ss_pred hccCCCCCeEEEEec-CCCCceecc---CccchHHHHhhc
Q psy16076 59 LHHLDEIPFHLTYIA-TDGDLLPIN---NDSNLGKALLNS 94 (161)
Q Consensus 59 lH~L~~vdf~I~YtD-~~GDLLPIN---NDDNf~kAl~sa 94 (161)
.|.+.+.++.|+.|| .+|.-.=++ ..+++..|+..|
T Consensus 99 ~~~~~~~~l~I~~T~l~tg~~v~~~~f~s~~~l~~av~AS 138 (252)
T cd07221 99 VHQLISGKMCISLTRVSDGENVLVSDFHSKDEVVDALVCS 138 (252)
T ss_pred HHHhcCCCEEEEEEECCCCCEEEEecCCCchHHHHHHHHH
Confidence 477777789999999 668765554 567889899886
No 39
>PF03012 PP_M1: Phosphoprotein; InterPro: IPR004259 This family includes the M1 phosphoprotein non-structural RNA polymerase alpha subunit (2.7.7.48 from EC) from various strains of Rabies virus []. The M1 phosphoprotein is thought to be a component of the active polymerase, and may be involved in template binding.; GO: 0003968 RNA-directed RNA polymerase activity, 0019083 viral transcription; PDB: 1VYI_A 3L32_B 3OA1_B 2WZL_A.
Probab=23.85 E-value=26 Score=31.62 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=0.0
Q ss_pred eEEEeeccccccceeeeccCCC
Q psy16076 100 QIIDVDVVPETCRRVRLLKSPN 121 (161)
Q Consensus 100 aIiDVDilPeT~RRVrL~k~pg 121 (161)
-=|+||-|||-+||.||--+.+
T Consensus 42 EPieVDsLPEDM~RL~i~d~~~ 63 (298)
T PF03012_consen 42 EPIEVDSLPEDMRRLQIDDEKP 63 (298)
T ss_dssp ----------------------
T ss_pred CCcccccchhhHhhhcccCCCC
Confidence 3478999999999999877643
No 40
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=23.81 E-value=58 Score=19.86 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=10.7
Q ss_pred CCcchHHHHHHHHhh
Q psy16076 45 DISTYNEFKILVEKL 59 (161)
Q Consensus 45 ~~~~feeF~~Ll~~l 59 (161)
.+.-|+|||..|..+
T Consensus 5 ~~d~f~eFY~rlk~I 19 (28)
T PF12108_consen 5 GGDPFSEFYERLKEI 19 (28)
T ss_dssp S--HHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 456899999988765
No 41
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=23.71 E-value=84 Score=22.12 Aligned_cols=9 Identities=56% Similarity=0.892 Sum_probs=7.6
Q ss_pred ceeEEEeeC
Q psy16076 125 PLGFYIRDG 133 (161)
Q Consensus 125 pLGFYIRdG 133 (161)
.-||||+|.
T Consensus 15 ~~GffiQd~ 23 (78)
T cd04486 15 LGGFYIQDE 23 (78)
T ss_pred cCEEEEEcC
Confidence 359999997
No 42
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=22.60 E-value=2.9e+02 Score=20.81 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=35.6
Q ss_pred ccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCcee
Q psy16076 32 FDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLP 80 (161)
Q Consensus 32 FdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLP 80 (161)
.+.+.+.+.+....-..|......+++.+ +...+.|.+||-.|...+
T Consensus 52 ~~~~~~~~~~~GgGGTdf~pvf~~~~~~~--~~~~~vi~fTDg~~~~~~ 98 (126)
T PF09967_consen 52 LEDELRDIKLKGGGGTDFRPVFEYLEENR--PRPSVVIYFTDGEGWPPE 98 (126)
T ss_pred ccccccccccCCCCCCcchHHHHHHHhcC--CCCCEEEEEeCCCCCCCC
Confidence 45567778887777788998888888765 456789999997775543
No 43
>PF06668 ITI_HC_C: Inter-alpha-trypsin inhibitor heavy chain C-terminus; InterPro: IPR010600 This entry represents the C-terminal region of inter-alpha-trypsin inhibitor heavy chains. Inter-alpha-trypsin inhibitors are glycoproteins with a high inhibitory activity against trypsin, built up from different combinations of four polypeptides: bikunin and the three heavy chains that belong to this family (HC1, HC2, HC3). The heavy chains do not have any protease inhibitory properties but have the capacity to interact in vitro and in vivo with hyaluronic acid, which promotes the stability of the extra-cellular matrix. This domain is associated with the VWA domain IPR002035 from INTERPRO.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0030212 hyaluronan metabolic process
Probab=22.28 E-value=58 Score=26.89 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=14.0
Q ss_pred cCCCCCCceeEEEeeCce
Q psy16076 118 KSPNSERPLGFYIRDGTS 135 (161)
Q Consensus 118 k~pgsdkpLGFYIRdGtS 135 (161)
|||..-.=|||||.|+.-
T Consensus 101 ~~~~~~d~LGfYi~ds~~ 118 (188)
T PF06668_consen 101 KHPYQRDFLGFYILDSHG 118 (188)
T ss_pred CCCCCCCeeEEEecCCCC
Confidence 456666789999999843
No 44
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=20.85 E-value=1.8e+02 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=20.3
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccc
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLD 144 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlE 144 (161)
++.|.+++.|+|.. |.+. ..+++|..|+|
T Consensus 207 ~~~r~~~i~k~~~~--~~~~-----~~f~It~~Gi~ 235 (235)
T cd01123 207 GEERIAKIVDSPHL--PEGE-----AVFAITEEGIR 235 (235)
T ss_pred CCceEEEEeeCCCC--CCce-----EEEEEeCCccC
Confidence 57789999999764 3221 35677888875
No 45
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=20.72 E-value=94 Score=20.74 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=18.3
Q ss_pred CCCceeEEEeeCceeEecCCcc
Q psy16076 122 SERPLGFYIRDGTSLRVTSTGL 143 (161)
Q Consensus 122 sdkpLGFYIRdGtSvRvt~~Gl 143 (161)
||+.+|++..|++.+=+.|.|-
T Consensus 12 Sng~vqv~FnD~tkivl~~~~~ 33 (68)
T PF00659_consen 12 SNGTVQVNFNDHTKIVLSPDGR 33 (68)
T ss_dssp TTSEEEEEETTS-EEEEETTCC
T ss_pred eCCCEEEEEeCCCEEEECCCCC
Confidence 6789999999999998888774
No 46
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.50 E-value=40 Score=31.98 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.5
Q ss_pred ceeEEeecccceee-eeccCCCCC
Q psy16076 24 KYNAFTLSFDAEFR-RFSVPKPDI 46 (161)
Q Consensus 24 ~~veVKSKFdAEFR-RFsl~r~~~ 46 (161)
++-|+-|||..|.| ||.|-|...
T Consensus 131 ~lYQi~~kfRdE~rpr~gllR~RE 154 (500)
T COG0442 131 KLYQIQSKFRDEKRPRFGLLRGRE 154 (500)
T ss_pred ceeeeeeEEeccccCCCCccchhe
Confidence 56699999999999 999987543
No 47
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=20.44 E-value=1.7e+02 Score=18.87 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=15.8
Q ss_pred ceeeeccCCCCCCceeEEEeeCce
Q psy16076 112 RRVRLLKSPNSERPLGFYIRDGTS 135 (161)
Q Consensus 112 RRVrL~k~pgsdkpLGFYIRdGtS 135 (161)
+.+.|-+. + .+++||-++++.+
T Consensus 2 ~~~~l~~~-~-~~~~G~~~~~~~~ 23 (82)
T cd00992 2 RTVTLRKD-P-GGGLGFSLRGGKD 23 (82)
T ss_pred EEEEEEeC-C-CCCcCEEEeCccc
Confidence 34556665 2 6899999998865
No 48
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=20.27 E-value=1.1e+02 Score=19.27 Aligned_cols=12 Identities=58% Similarity=0.866 Sum_probs=9.1
Q ss_pred CceeEEEeeCce
Q psy16076 124 RPLGFYIRDGTS 135 (161)
Q Consensus 124 kpLGFYIRdGtS 135 (161)
.++||.+.++..
T Consensus 1 ~~~G~~~~~~~~ 12 (70)
T cd00136 1 GGLGFSIRGGTE 12 (70)
T ss_pred CCccEEEecCCC
Confidence 368999988764
No 49
>PF09890 DUF2117: Uncharacterized protein conserved in archaea (DUF2117); InterPro: IPR012032 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.21 E-value=3.7e+02 Score=23.26 Aligned_cols=80 Identities=15% Similarity=0.298 Sum_probs=49.3
Q ss_pred eEEEEec-CCCCceeccCc----cchHHHHhhcc---------cccceEEEeeccccc---cceeeeccCC---------
Q psy16076 67 FHLTYIA-TDGDLLPINND----SNLGKALLNSF---------LRVSQIIDVDVVPET---CRRVRLLKSP--------- 120 (161)
Q Consensus 67 f~I~YtD-~~GDLLPINND----DNf~kAl~saF---------R~VSaIiDVDilPeT---~RRVrL~k~p--------- 120 (161)
+.|.... .||.++|-|.. +++.+.++..| +.+|...... ++. +|+++= =.|
T Consensus 34 IQiErpg~~dG~ii~Wn~~~~~~~~~a~~Ls~~l~l~i~~p~~~~i~~~~~~~--~~~~~v~R~i~G-v~pGE~I~VNGi 110 (215)
T PF09890_consen 34 IQIERPGESDGTIIPWNKKAEEVEPIAEKLSELLGLKIVRPVENPISSGENCW--EGKGRVFRKISG-VSPGENIFVNGI 110 (215)
T ss_pred EEEecCCCCCCeEEeccccccchHHHHHHHHHHhCCCccCcccccccCccccc--cCCceEEEEEec-cCCCCCEEEeeE
Confidence 5566666 88999999843 57777777752 2233332222 333 455551 112
Q ss_pred ----CCCCceeEEEeeCceeEe-----cCCccccccce
Q psy16076 121 ----NSERPLGFYIRDGTSLRV-----TSTGLDKFLRI 149 (161)
Q Consensus 121 ----gsdkpLGFYIRdGtSvRv-----t~~GlEKvPGi 149 (161)
.....+=.+.+||.-+.+ -.|||||.+-+
T Consensus 111 VIG~A~s~~V~lvae~G~i~~I~Gg~iK~hGvEKL~~v 148 (215)
T PF09890_consen 111 VIGRATSSEVTLVAENGKIVDIIGGEIKEHGVEKLGKV 148 (215)
T ss_pred EEEEEcCCeEEEEEeCCEEEEEECeEechhhhhhccCC
Confidence 234556678889888866 68999999873
No 50
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=20.02 E-value=1.4e+02 Score=19.01 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=21.8
Q ss_pred eeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 113 RVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 113 RVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.+.+.|. + ..+||.+.++..-. +|++|++..-+
T Consensus 4 ~~~~~~~-~--~~~G~~~~~~~~~~---------~~~~i~~v~~~ 36 (85)
T smart00228 4 LVELEKG-G--GGLGFSLVGGKDEG---------GGVVVSSVVPG 36 (85)
T ss_pred EEEEEEC-C--CcccEEEECCCCCC---------CCEEEEEECCC
Confidence 3566777 4 78999888764211 57888776544
Done!