Query psy16076
Match_columns 161
No_of_seqs 59 out of 61
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 20:16:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 100.0 1.3E-35 4.6E-40 216.8 6.0 72 23-94 4-75 (86)
2 2kkc_A Sequestosome-1; P62, PB 99.6 9.6E-16 3.3E-20 114.1 7.2 66 29-94 15-90 (102)
3 2ktr_A Sequestosome-1; autopha 99.5 8.9E-15 3E-19 111.7 7.5 71 24-94 19-105 (117)
4 1nf3_C PAR-6B; semi-CRIB motif 98.6 2.9E-08 9.8E-13 72.2 5.0 62 95-157 14-75 (128)
5 1vd2_A Protein kinase C, IOTA 98.5 4.5E-07 1.5E-11 66.0 7.4 69 23-93 4-73 (89)
6 2bkf_A Zinc-finger protein NBR 98.2 3.9E-06 1.3E-10 61.5 6.7 71 24-96 5-75 (87)
7 1wj6_A KIAA0049 protein, RSGI 98.0 7.2E-06 2.5E-10 61.6 6.0 72 23-96 12-83 (101)
8 1pqs_A Cell division control p 96.0 0.0064 2.2E-07 42.9 3.8 50 45-94 10-64 (77)
9 1q1o_A Cell division control p 95.7 0.015 5E-07 43.1 5.0 67 26-94 6-85 (98)
10 1oey_J P40-PHOX, neutrophil cy 94.2 0.095 3.2E-06 39.7 5.9 51 44-96 30-80 (107)
11 2yt7_A Amyloid beta A4 precurs 93.4 0.1 3.4E-06 35.8 4.4 42 107-157 6-47 (101)
12 2cu1_A Mitogen-activated prote 93.4 0.21 7.1E-06 37.6 6.3 64 24-93 7-70 (103)
13 1oey_A P67-PHOX, neutrophil cy 93.3 0.15 5.2E-06 36.5 5.3 65 26-94 6-71 (83)
14 1uju_A Scribble; PDZ domain, c 89.9 0.29 9.8E-06 33.7 3.5 49 107-157 6-54 (111)
15 3o46_A Maguk P55 subfamily mem 88.9 0.42 1.4E-05 31.8 3.7 36 109-157 3-38 (93)
16 1r6j_A Syntenin 1; PDZ, membra 88.5 0.41 1.4E-05 33.0 3.5 30 110-141 4-33 (82)
17 1ihj_A INAD; intermolecular di 88.5 0.54 1.8E-05 31.4 4.0 44 109-157 4-47 (98)
18 1ip9_A BEM1 protein; ubiquitin 87.5 0.99 3.4E-05 32.8 5.1 65 24-93 11-76 (85)
19 2d8i_A T-cell lymphoma invasio 86.9 0.54 1.8E-05 33.7 3.4 46 103-157 8-54 (114)
20 3i4w_A Disks large homolog 4; 86.7 0.66 2.3E-05 31.1 3.6 39 105-156 6-44 (104)
21 1kwa_A Hcask/LIN-2 protein; PD 86.3 0.81 2.8E-05 30.5 3.8 35 110-157 1-35 (88)
22 2ehr_A INAD-like protein; PDZ 85.6 0.82 2.8E-05 31.7 3.7 46 110-157 15-60 (117)
23 2e7k_A Maguk P55 subfamily mem 84.0 1.1 3.8E-05 30.0 3.7 35 108-156 4-38 (91)
24 1va8_A Maguk P55 subfamily mem 82.7 1.3 4.3E-05 30.8 3.6 24 108-133 23-46 (113)
25 3b76_A E3 ubiquitin-protein li 82.4 0.9 3.1E-05 32.4 2.9 43 107-157 21-63 (118)
26 2dc2_A GOPC, golgi associated 81.9 1.2 4.1E-05 30.5 3.2 40 107-157 6-45 (103)
27 2iwo_A Multiple PDZ domain pro 81.6 0.95 3.2E-05 32.1 2.7 50 100-157 14-63 (120)
28 2awx_A Synapse associated prot 80.1 1.4 4.8E-05 29.9 3.1 42 108-156 1-42 (105)
29 2d92_A INAD-like protein; PDZ 79.6 2 6.7E-05 29.5 3.7 44 106-157 11-54 (108)
30 1wi2_A Riken cDNA 2700099C19; 78.6 1.9 6.6E-05 29.2 3.4 42 103-155 8-49 (104)
31 1m5z_A GRIP, AMPA receptor int 77.7 2.5 8.7E-05 27.6 3.7 38 107-155 3-40 (91)
32 1ujd_A KIAA0559 protein; PDZ d 77.4 3.1 0.00011 28.9 4.3 47 107-157 9-59 (117)
33 1wi4_A Synip, syntaxin binding 77.0 3 0.0001 28.9 4.1 40 107-157 12-51 (109)
34 2vwr_A Ligand of NUMB protein 76.9 2.8 9.6E-05 27.7 3.8 36 111-157 4-39 (95)
35 2iwq_A Multiple PDZ domain pro 74.7 3.5 0.00012 29.3 4.0 46 110-157 24-69 (123)
36 2ejy_A 55 kDa erythrocyte memb 71.3 3.8 0.00013 28.4 3.4 35 110-157 12-46 (97)
37 1ufx_A KIAA1526 protein; PDZ d 70.6 3.7 0.00013 28.2 3.3 37 110-157 6-42 (103)
38 2npt_B Mitogen-activated prote 70.4 7.1 0.00024 29.2 4.9 66 22-93 17-82 (100)
39 2ego_A General receptor for ph 70.2 3.8 0.00013 27.2 3.2 42 111-157 5-47 (96)
40 2v90_A PDZ domain-containing p 69.1 4.5 0.00015 26.7 3.3 36 110-155 3-38 (96)
41 2byg_A Channel associated prot 69.0 5.5 0.00019 27.9 3.9 44 107-157 21-64 (117)
42 2fcf_A Multiple PDZ domain pro 68.6 5.5 0.00019 26.5 3.7 45 111-157 5-49 (103)
43 3gge_A PDZ domain-containing p 68.6 4.3 0.00015 29.1 3.3 37 108-158 3-39 (95)
44 1qav_A Alpha-1 syntrophin (res 68.6 6.3 0.00021 25.7 3.9 36 110-156 4-39 (90)
45 2cs5_A Tyrosine-protein phosph 68.4 5.5 0.00019 27.5 3.8 38 109-157 14-51 (119)
46 3r68_A Na(+)/H(+) exchange reg 67.6 3.7 0.00013 26.9 2.6 26 107-135 2-27 (95)
47 2jrh_A Mitogen-activated prote 66.8 12 0.00042 27.6 5.5 64 24-93 3-66 (94)
48 1d5g_A Human phosphatase HPTP1 66.5 5 0.00017 26.4 3.1 41 108-157 3-43 (96)
49 1uez_A KIAA1526 protein; PDZ d 66.3 6.4 0.00022 26.3 3.7 39 107-155 5-43 (101)
50 1z87_A Alpha-1-syntrophin; pro 64.8 4.1 0.00014 33.5 2.9 37 110-157 77-113 (263)
51 2dkr_A LIN-7 homolog B; LIN-7B 64.7 7 0.00024 25.4 3.5 34 110-155 5-38 (93)
52 2fe5_A Presynaptic protein SAP 64.6 6.6 0.00023 25.6 3.4 41 109-156 2-42 (94)
53 3hpk_A Protein interacting wit 63.7 6.6 0.00022 27.4 3.4 39 108-157 17-55 (125)
54 1tp5_A Presynaptic density pro 62.1 10 0.00034 26.1 4.1 36 107-155 11-46 (119)
55 2c60_A Human mitogen-activated 61.8 13 0.00046 28.1 5.0 65 23-93 29-93 (111)
56 1mfg_A ERB-B2 interacting prot 61.3 7.9 0.00027 25.4 3.3 41 112-157 5-45 (95)
57 3cbz_A Dishevelled-2; PDZ doma 61.3 3 0.0001 28.7 1.2 38 111-157 6-43 (108)
58 1wfg_A Regulating synaptic mem 60.9 6.8 0.00023 28.0 3.1 43 107-157 33-75 (131)
59 1uhp_A Hypothetical protein KI 60.7 8.3 0.00028 26.0 3.4 44 110-157 8-51 (107)
60 1i16_A Interleukin 16, LCF; cy 59.3 7.8 0.00027 27.5 3.2 41 108-157 27-67 (130)
61 2db5_A INAD-like protein; PDZ 58.9 4.4 0.00015 28.4 1.8 42 108-157 23-64 (128)
62 1g9o_A NHE-RF; PDZ domain, com 56.9 12 0.00042 24.2 3.6 33 110-155 3-35 (91)
63 3k1r_A Harmonin; protein-prote 56.3 12 0.00041 28.1 4.0 40 107-157 81-120 (192)
64 2vz5_A TAX1-binding protein 3; 55.6 5.6 0.00019 28.9 2.0 47 110-157 23-74 (139)
65 1wh1_A KIAA1095 protein; PDZ d 55.6 12 0.00042 26.1 3.7 46 103-156 12-57 (124)
66 2csj_A TJP2 protein; PDZ domai 55.4 11 0.00037 26.0 3.3 43 110-157 14-56 (117)
67 3nfk_A Tyrosine-protein phosph 55.3 14 0.00049 24.7 3.9 39 106-155 13-51 (107)
68 2i1n_A Discs, large homolog 3; 55.1 11 0.00038 25.0 3.2 42 109-157 3-44 (102)
69 1x6d_A Interleukin-16; PDZ dom 53.8 12 0.00042 25.6 3.4 40 108-157 13-52 (119)
70 2fne_A Multiple PDZ domain pro 53.3 9.3 0.00032 26.8 2.7 39 110-157 25-63 (117)
71 1wha_A KIAA0147 protein, scrib 53.1 12 0.00043 25.1 3.3 39 113-157 10-48 (105)
72 2qg1_A Multiple PDZ domain pro 51.9 14 0.00049 23.9 3.3 34 111-156 5-38 (92)
73 2eno_A Synaptojanin-2-binding 50.7 8.6 0.00029 26.6 2.2 45 106-157 13-57 (120)
74 1q7x_A PDZ2B domain of PTP-BAS 50.0 9.5 0.00032 25.7 2.3 40 109-157 8-52 (108)
75 3suz_A Amyloid beta A4 precurs 49.8 3.9 0.00013 34.7 0.3 42 107-157 201-242 (388)
76 1um1_A KIAA1849 protein, RSGI 49.4 14 0.00047 25.0 3.0 40 109-157 7-46 (110)
77 2jik_A Synaptojanin-2 binding 49.4 15 0.00051 24.4 3.1 41 108-155 5-45 (101)
78 2he4_A Na(+)/H(+) exchange reg 49.3 18 0.00061 23.4 3.5 33 110-155 4-36 (90)
79 2gzv_A PRKCA-binding protein; 48.3 21 0.00072 24.8 3.9 38 108-156 22-59 (114)
80 3qe1_A Sorting nexin-27, G pro 47.9 18 0.00063 24.1 3.5 44 110-156 6-52 (107)
81 4e34_A Golgi-associated PDZ an 47.0 22 0.00074 22.8 3.6 35 111-156 3-37 (87)
82 1uew_A Membrane associated gua 46.7 22 0.00074 24.3 3.7 24 109-134 9-32 (114)
83 1wf8_A Neurabin-I; PDZ domain, 44.9 15 0.0005 24.8 2.6 39 110-157 9-50 (107)
84 2r4h_A Membrane-associated gua 44.2 20 0.00068 24.5 3.2 37 108-156 22-58 (112)
85 2o2t_A Multiple PDZ domain pro 43.9 7.7 0.00026 26.6 1.1 41 109-157 19-59 (117)
86 2kyy_A Possible ATP-dependent 43.6 24 0.00081 26.1 3.8 58 23-94 17-84 (153)
87 2daz_A INAD-like protein; PDZ 42.0 27 0.00092 24.2 3.7 42 105-157 20-61 (124)
88 3ngh_A PDZ domain-containing p 41.7 17 0.00058 24.3 2.5 21 111-133 2-22 (106)
89 2d90_A PDZ domain containing p 41.0 20 0.00067 23.9 2.7 22 109-133 5-26 (102)
90 2h2b_A Tight junction protein 40.0 30 0.001 23.0 3.6 23 110-134 7-29 (107)
91 4amh_A Disks large homolog 1; 39.7 18 0.00061 24.6 2.4 34 120-157 9-42 (106)
92 1v62_A KIAA1719 protein; struc 39.7 20 0.00067 24.8 2.6 37 111-157 16-52 (117)
93 2jre_A C60-1 PDZ domain peptid 38.4 43 0.0015 22.3 4.2 45 108-157 10-54 (108)
94 2eei_A PDZ domain-containing p 37.6 12 0.00042 25.0 1.3 21 110-133 8-28 (106)
95 2g5m_B Neurabin-2; spinophilin 37.1 19 0.00065 24.4 2.2 38 111-157 5-45 (113)
96 2dlu_A INAD-like protein; PDZ 37.0 32 0.0011 23.2 3.3 33 111-157 16-48 (111)
97 1y7n_A Amyloid beta A4 precurs 36.6 37 0.0013 22.7 3.6 37 107-143 7-43 (90)
98 3r0h_A INAD, inactivation-NO-a 36.3 30 0.001 25.4 3.3 42 106-157 14-55 (206)
99 2vsp_A PDZ domain-containing p 35.5 7 0.00024 25.6 -0.3 22 109-133 2-23 (91)
100 3lmm_A Uncharacterized protein 35.2 47 0.0016 30.0 5.0 112 23-138 37-158 (583)
101 2eaq_A LIM domain only protein 34.9 43 0.0015 21.5 3.6 22 111-132 4-25 (90)
102 2xkx_A Disks large homolog 4; 34.0 36 0.0012 31.1 4.0 57 95-158 44-100 (721)
103 3soe_A Membrane-associated gua 33.5 25 0.00085 25.5 2.4 22 109-133 11-32 (113)
104 2eeh_A PDZ domain-containing p 33.4 40 0.0014 22.3 3.3 36 109-155 9-44 (100)
105 1n7t_A 99-MER peptide of densi 32.1 24 0.00081 23.5 2.0 40 112-156 13-52 (103)
106 2dls_A PDZ-rhogef, RHO guanine 32.0 33 0.0011 22.5 2.7 24 108-134 6-29 (93)
107 1n7e_A AMPA receptor interacti 31.7 50 0.0017 21.6 3.5 22 110-134 5-26 (97)
108 2edp_A Fragment, shroom family 31.5 25 0.00086 23.4 2.1 25 108-134 7-31 (100)
109 3egg_C Spinophilin; PP1, serin 31.3 35 0.0012 25.7 3.1 37 112-157 82-121 (170)
110 1wjn_A Tubulin-folding protein 31.0 1.1E+02 0.0037 20.5 5.3 41 45-85 31-73 (97)
111 2lob_A Golgi-associated PDZ an 36.8 11 0.00036 26.4 0.0 36 110-156 27-62 (112)
112 2dmz_A INAD-like protein; PDZ 29.4 40 0.0014 23.3 2.9 43 109-157 14-56 (129)
113 1uep_A Membrane associated gua 28.6 39 0.0013 22.5 2.6 36 110-157 9-44 (103)
114 2kjd_A Sodium/hydrogen exchang 28.6 67 0.0023 22.0 3.9 33 110-155 9-41 (128)
115 3sfj_A TAX1-binding protein 3; 28.5 27 0.00091 23.1 1.7 48 110-157 4-55 (104)
116 2z17_A Pleckstrin homology SEC 27.4 84 0.0029 20.8 4.1 43 111-157 16-58 (104)
117 3li6_A Calcium-binding protein 27.3 18 0.00061 21.1 0.6 23 36-58 42-64 (66)
118 1x5n_A Harmonin; PDZ domain, u 26.9 72 0.0025 21.4 3.8 35 111-156 16-50 (114)
119 2k57_A Putative lipoprotein; s 26.7 39 0.0013 22.9 2.3 19 67-85 28-46 (61)
120 2rb6_A Uncharacterized protein 26.7 33 0.0011 23.3 1.9 19 67-85 28-46 (61)
121 2jn0_A Hypothetical lipoprotei 26.6 34 0.0012 23.2 2.0 19 67-85 28-46 (61)
122 1b8q_A Protein (neuronal nitri 26.1 35 0.0012 23.6 2.1 26 107-134 5-30 (127)
123 3kzd_A TIAM-1, T-lymphoma inva 26.1 46 0.0016 23.2 2.7 37 111-155 7-43 (94)
124 3zzx_A Thioredoxin; oxidoreduc 26.0 32 0.0011 23.2 1.8 32 100-136 55-86 (105)
125 2zts_A Putative uncharacterize 25.4 46 0.0016 24.2 2.7 33 110-147 214-246 (251)
126 2npt_A Dual specificity mitoge 24.8 1.7E+02 0.0057 21.9 5.6 53 38-93 28-81 (106)
127 1cb1_A Calbindin D9K; calcium- 24.6 29 0.00099 20.7 1.2 25 36-60 53-77 (78)
128 2bhm_A Type IV secretion syste 24.4 24 0.00081 26.1 0.9 15 124-141 145-159 (164)
129 2yuy_A RHO GTPase activating p 24.4 17 0.00058 25.4 0.1 20 109-131 7-26 (126)
130 3l4f_D SH3 and multiple ankyri 23.7 95 0.0033 22.0 4.1 46 109-157 26-75 (132)
131 4akz_A Type IV secretion syste 23.4 30 0.001 24.9 1.3 14 124-140 124-137 (138)
132 2cc3_A Protein VIRB8; secretio 23.1 26 0.00089 25.8 0.9 17 124-143 126-142 (150)
133 2wzl_A Phosphoprotein; viral p 22.8 18 0.00061 31.5 0.0 22 100-121 42-63 (303)
134 1um7_A Synapse-associated prot 22.7 18 0.00062 24.2 0.0 24 108-134 13-36 (113)
135 1qx2_A Vitamin D-dependent cal 22.5 28 0.00095 20.7 0.9 24 36-59 51-74 (76)
136 3axa_A Afadin, nectin-3, prote 22.5 61 0.0021 21.5 2.7 37 111-157 12-48 (106)
137 1ti3_A Thioredoxin H, PTTRXH1; 22.2 36 0.0012 21.6 1.4 19 75-93 3-21 (113)
138 2rd1_A Putative outer membrane 21.2 49 0.0017 22.5 1.9 27 68-106 29-55 (62)
139 1q3o_A Shank1; PDZ, GKAP, pept 21.0 75 0.0026 21.2 2.9 24 110-135 7-30 (109)
140 1tiz_A Calmodulin-related prot 20.9 26 0.00089 20.2 0.5 24 35-58 42-65 (67)
141 3bdu_A Putative lipoprotein; X 20.9 38 0.0013 23.0 1.3 18 68-85 29-46 (62)
142 1wg6_A Hypothetical protein (r 20.3 65 0.0022 22.6 2.6 39 113-158 28-66 (127)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=100.00 E-value=1.3e-35 Score=216.81 Aligned_cols=72 Identities=36% Similarity=0.679 Sum_probs=69.9
Q ss_pred cceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 23 HKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 23 ~~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
.+++|||||||||||||||+++++++||+||++|+++|+|.+++|+|+|+|+|||||||||||||++|+++|
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a 75 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASG 75 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSS
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCHHHHHHHHHhC
Confidence 367999999999999999999999999999999999999999999999999999999999999999999998
No 2
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=99.61 E-value=9.6e-16 Score=114.12 Aligned_cols=66 Identities=26% Similarity=0.248 Sum_probs=60.6
Q ss_pred eecccceeeeeccCCCC---------CcchHHHHHHHHhh-ccCCCCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 29 TLSFDAEFRRFSVPKPD---------ISTYNEFKILVEKL-HHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 29 KSKFdAEFRRFsl~r~~---------~~~feeF~~Ll~~l-H~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
|++|++|+|||++++.. +.+|++++..|+.+ |.|.+.+|+|+|.|.||||++|++|++|..|++++
T Consensus 15 ~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~ 90 (102)
T 2kkc_A 15 KEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYV 90 (102)
T ss_dssp SSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHHC
T ss_pred CCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHhc
Confidence 56779999999998642 35899999999999 89999999999999999999999999999999986
No 3
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=99.55 E-value=8.9e-15 Score=111.66 Aligned_cols=71 Identities=24% Similarity=0.208 Sum_probs=64.4
Q ss_pred ceeEEeeccc------ceeeeeccCCC---------CCcchHHHHHHHHhhc-cCCCCCeEEEEecCCCCceeccCccch
Q psy16076 24 KYNAFTLSFD------AEFRRFSVPKP---------DISTYNEFKILVEKLH-HLDEIPFHLTYIATDGDLLPINNDSNL 87 (161)
Q Consensus 24 ~~veVKSKFd------AEFRRFsl~r~---------~~~~feeF~~Ll~~lH-~L~~vdf~I~YtD~~GDLLPINNDDNf 87 (161)
..+.||--+. +|+|||+++.. .+.+|++++..|+.+| .|.+.+|+|+|.|.+|||++|++|++|
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeEL 98 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEEL 98 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHH
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHH
Confidence 4578999884 99999999843 3679999999999999 899999999999999999999999999
Q ss_pred HHHHhhc
Q psy16076 88 GKALLNS 94 (161)
Q Consensus 88 ~kAl~sa 94 (161)
..|++++
T Consensus 99 ~~Al~~~ 105 (117)
T 2ktr_A 99 TMAMSYV 105 (117)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9999986
No 4
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.64 E-value=2.9e-08 Score=72.15 Aligned_cols=62 Identities=58% Similarity=0.837 Sum_probs=58.6
Q ss_pred ccccceEEEeeccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 95 FLRVSQIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 95 FR~VSaIiDVDilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
||.++++.|++..|+..|.|+|.|. +++.+|||.|+.|+....++.|++..+|++|++..-|
T Consensus 14 ~~~~~~~~~~~~~~~~~r~v~l~k~-~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~ 75 (128)
T 1nf3_C 14 FRPVSSIIDVDILPETHRRVRLCKY-GTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPG 75 (128)
T ss_dssp EEEEEEEECCTTSCTTCEEEEECCS-STTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTT
T ss_pred ccccCCccccccCCCccEEEEEEEC-CCCCCccEEEEccccccccccccCCCCCEEEEEECCC
Confidence 8999999999999999999999999 7789999999999999999999999999999998654
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=98.47 E-value=4.5e-07 Score=65.98 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=62.2
Q ss_pred cceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCC-CCCeEEEEecCCCCceeccCccchHHHHhh
Q psy16076 23 HKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLD-EIPFHLTYIATDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 23 ~~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~-~vdf~I~YtD~~GDLLPINNDDNf~kAl~s 93 (161)
.+.|.||--|..+.||++++.. .+|++++..|+.+=.+. +-+|++.|.|.+||+.+|.+|+.+..|++-
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~--i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPS--ISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRL 73 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTT--CCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHH
T ss_pred CCeEEEEEEeCCeEEEEECCCC--CCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHH
Confidence 3568999999999999999884 79999999999887776 557999999999999999999999999974
No 6
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=98.18 E-value=3.9e-06 Score=61.50 Aligned_cols=71 Identities=18% Similarity=0.409 Sum_probs=65.0
Q ss_pred ceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhccc
Q psy16076 24 KYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNSFL 96 (161)
Q Consensus 24 ~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~saFR 96 (161)
..+-+|=-|..|.+||.++-....+|+|....+...-.|. +|.|.|+|.+||.+-||.+..|.+|++.|..
T Consensus 5 ~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k 75 (87)
T 2bkf_A 5 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINSQGEYEEALKMAVK 75 (87)
T ss_dssp CCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred ceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEEEecHHHHHHHHHHhcc
Confidence 3466888999999999998888899999999999999997 7799999999999999999999999998744
No 7
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=98.05 E-value=7.2e-06 Score=61.59 Aligned_cols=72 Identities=18% Similarity=0.405 Sum_probs=65.6
Q ss_pred cceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhccc
Q psy16076 23 HKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNSFL 96 (161)
Q Consensus 23 ~~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~saFR 96 (161)
...+-+|=-|..|.+||.++-.+..+|+|....+...-.|. +|.|.|+|.+||.+-||.+..|.+|++.|..
T Consensus 12 ~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k 83 (101)
T 1wj6_A 12 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINSQGEYEEALKMAVK 83 (101)
T ss_dssp CSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCCSHHHHHHHHHHHHH
T ss_pred CccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEecHHHHHHHHHHhcc
Confidence 34567889999999999998888899999999999999997 6699999999999999999999999998844
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=95.97 E-value=0.0064 Score=42.91 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=41.7
Q ss_pred CCcchHHHHHHHHhhccCC-----CCCeEEEEecCCCCceeccCccchHHHHhhc
Q psy16076 45 DISTYNEFKILVEKLHHLD-----EIPFHLTYIATDGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 45 ~~~~feeF~~Ll~~lH~L~-----~vdf~I~YtD~~GDLLPINNDDNf~kAl~sa 94 (161)
.-.+|++|+..|..-=.+. .-.+.|.|.|.+||+.+|.+||.+.-|++++
T Consensus 10 ~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 10 KVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp TCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 3468999998887655543 2458999999999999999999999999986
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=95.73 E-value=0.015 Score=43.08 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=52.2
Q ss_pred eEEeeccc--------ceeeeeccCCCCCcchHHHHHHHHhhccCC-CCC----eEEEEecCCCCceeccCccchHHHHh
Q psy16076 26 NAFTLSFD--------AEFRRFSVPKPDISTYNEFKILVEKLHHLD-EIP----FHLTYIATDGDLLPINNDSNLGKALL 92 (161)
Q Consensus 26 veVKSKFd--------AEFRRFsl~r~~~~~feeF~~Ll~~lH~L~-~vd----f~I~YtD~~GDLLPINNDDNf~kAl~ 92 (161)
+.||--|+ .+.+=.-++. -..|++|+..|..-=.+. +.+ +.|.|.|.+||+..|.+||.+.-|++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~--~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e 83 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEK--VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKE 83 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECT--TCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecC--CCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHH
Confidence 78888888 5555555554 478999998776554442 334 68999999999999999999999999
Q ss_pred hc
Q psy16076 93 NS 94 (161)
Q Consensus 93 sa 94 (161)
++
T Consensus 84 ~~ 85 (98)
T 1q1o_A 84 ML 85 (98)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 10
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.24 E-value=0.095 Score=39.72 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=45.2
Q ss_pred CCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhhccc
Q psy16076 44 PDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLNSFL 96 (161)
Q Consensus 44 ~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~saFR 96 (161)
...++|+|...||++.-. ..|++|-|.|.+|||.-|-.|+...-+++-|-.
T Consensus 30 ~~~P~ykdLl~lmr~~F~--~~DIaLNYrD~eGDLIrilddeDv~lmi~~sr~ 80 (107)
T 1oey_J 30 SSTPLLKDLLELTRREFQ--REDIALNYRDAEGDLVRLLSDEDVALMVRQARG 80 (107)
T ss_dssp TCCCCHHHHHHHHHHHHC--CSSEEEEEECTTSCEEECCSHHHHHHHHHHCCC
T ss_pred ccCCCHHHHHHHHHHHhc--ccceeeeeecCCCCEEEEcchHHHHHHHHHhhc
Confidence 456899999999998766 679999999999999999999999999888733
No 11
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=93.43 E-value=0.1 Score=35.75 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=31.9
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-|+..|.|++.|.+| ..|||.|++. ..| +..||++|++..-|
T Consensus 6 ~~~~~~~v~l~k~~g--~~lG~~i~~~------~~~-~~~~~~~V~~V~~~ 47 (101)
T 2yt7_A 6 SGDNCREVHLEKRRG--EGLGVALVES------GWG-SLLPTAVIANLLHG 47 (101)
T ss_dssp TTCCCEEEEEECCTT--CCCCEEEEEC------CCS-SSSCCEEEEEECTT
T ss_pred CCCceEEEEEEeCCC--CccCEEEEeC------CCC-CCccCEEEEEECCC
Confidence 478899999999866 5899999862 222 56788999887654
No 12
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=93.37 E-value=0.21 Score=37.64 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=53.2
Q ss_pred ceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhh
Q psy16076 24 KYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 24 ~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~s 93 (161)
.-+.||=-|+.|-|=+.++|. .+|+|...-+.. .-+-.+.+.|+| +--++||.|+|++.||+.-
T Consensus 7 ~dvRiKfE~~GEkRIi~f~RP--v~f~eL~~Kv~~---~fGq~ldL~y~n-~EllIpl~sQeDLDkaIel 70 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPRP--VKLEDLRSKAKI---AFGQSMDLHYTN-NELVIPLTTQDDLDKAVEL 70 (103)
T ss_dssp CEEEEEEEETTEEEEEEEESS--CCHHHHHHHHHH---HHSSCEEEEECS-SSSCEECCSHHHHHHHHHH
T ss_pred CcEEEEEEecCeEEEEeccCC--ccHHHHHHHHHH---HhCCeeeEEEec-ceEEEeccCHHHHHHHHHH
Confidence 568899999999999999985 899987664444 445589999996 5689999999999999975
No 13
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.31 E-value=0.15 Score=36.46 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=50.6
Q ss_pred eEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecC-CCCceeccCccchHHHHhhc
Q psy16076 26 NAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIAT-DGDLLPINNDSNLGKALLNS 94 (161)
Q Consensus 26 veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~-~GDLLPINNDDNf~kAl~sa 94 (161)
+-||=-|. | =+.|.-..-..|.+.+.+|..-=.++.....++|.|+ .|.+. |.||+++..|.+.+
T Consensus 6 ~~VKV~~~--~-tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~~ 71 (83)
T 1oey_A 6 YTLKVHYK--Y-TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV-PLSEDSMKDAWGQV 71 (83)
T ss_dssp EEEEEESS--S-EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE-ECCTTTHHHHHTTC
T ss_pred EEEEEEEE--E-EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee-ccChHHHHHHHHhc
Confidence 55666665 2 3444445557999999999888888888899999995 57777 99999999998763
No 14
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=89.92 E-value=0.29 Score=33.75 Aligned_cols=49 Identities=20% Similarity=0.110 Sum_probs=33.4
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.|...|.|.|.|.++ ..|||.|+.|..-..-....+...|++|+...-|
T Consensus 6 ~~~~~~~v~l~k~~~--~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~ 54 (111)
T 1uju_A 6 SGPGLRELCIQKAPG--ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPT 54 (111)
T ss_dssp CSCSSSCEEEECCTT--CCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTT
T ss_pred CCCccEEEEEEECCC--CccCEEEECCccccccccccCCCCCEEEEEECCC
Confidence 577889999998754 7999999988742111112355678888876543
No 15
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=88.94 E-value=0.42 Score=31.82 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.1
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
++.|.|+|.|. | .+|||.++.+ +.-.|++|++..-|
T Consensus 3 ~~~r~v~l~k~-~--~~lG~~i~~~----------~~~~~~~V~~v~~g 38 (93)
T 3o46_A 3 DSVKIIRLVKN-R--EPLGATIKKD----------EQTGAIIVARIMRG 38 (93)
T ss_dssp -CCEEEEEEES-S--SCCCEEEEEC----------TTTCCEEEEEECTT
T ss_pred ccEEEEEEEeC-C--CCccEEEEec----------CCCCCEEEEEECCC
Confidence 68899999998 6 4999999865 34567788776544
No 16
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=88.49 E-value=0.41 Score=32.99 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=24.1
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCC
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTST 141 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~ 141 (161)
.+|.|.|.|. +..+|||.+++|.-.+|-+.
T Consensus 4 ~~r~v~l~k~--~~g~~Gf~i~~g~I~~v~~g 33 (82)
T 1r6j_A 4 DPRTITMHKD--STGHVGFIFKNGKITSIVKD 33 (82)
T ss_dssp CCEEEEEECC--TTSCCCEEEETTEEEEECTT
T ss_pred ceEEEEEEEC--CCCCeEEEEECCEEEEecCC
Confidence 4688999997 34789999999987777554
No 17
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=88.47 E-value=0.54 Score=31.36 Aligned_cols=44 Identities=20% Similarity=0.119 Sum_probs=32.1
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
|..|.|.|.|.++ ..|||-|+.|..- +.++....|++|+...-|
T Consensus 4 e~~~~v~l~k~~~--~glG~~i~~~~~~---~~~~~~~~g~~V~~V~~~ 47 (98)
T 1ihj_A 4 ELIHMVTLDKTGK--KSFGICIVRGEVK---DSPNTKTTGIFIKGIVPD 47 (98)
T ss_dssp CEEEEEEEECTTS--SSCCEEEEEEEEC---CSSSCCEEEEEEEEECTT
T ss_pred ceEEEEEEEeCCC--CCcCEEEeccccC---CccccCCCCEEEEEECCC
Confidence 5678899999734 5899999988753 344556678888876543
No 18
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=87.45 E-value=0.99 Score=32.79 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=52.2
Q ss_pred ceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEec-CCCCceeccCccchHHHHhh
Q psy16076 24 KYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIA-TDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 24 ~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD-~~GDLLPINNDDNf~kAl~s 93 (161)
+.+.||=-|..+ =|.|--..-.+|++.+..|...=.+ +....+.|.| +.|+ +|++|+.+..|++-
T Consensus 11 ~~~KVK~yy~DD--IiAIrvP~di~~~~L~dKi~~RLk~-~~~~l~~ykde~~g~--~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 11 KTTKIKFYYKDD--IFALMLKGDTTYKELRSKIAPRIDT-DNFKLQTKLFDGSGE--EIKTDSQVSNIIQA 76 (85)
T ss_dssp CCEEEEECBTTC--CEEEEECSCCCHHHHHHHHHHHHTS-SCEEEEECCSSSCCS--CCCSHHHHHHHHHT
T ss_pred CceEEEEEecCc--EEEEECCCCCCHHHHHHHHHHHhcc-cceEEEEecCCCCCC--cccCHHHHHHHHHh
Confidence 668899989887 5777666678999999877776666 4456677777 6799 99999999999863
No 19
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.90 E-value=0.54 Score=33.67 Aligned_cols=46 Identities=15% Similarity=0.390 Sum_probs=33.8
Q ss_pred EeeccccccceeeeccCCCCC-CceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 103 DVDVVPETCRRVRLLKSPNSE-RPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 103 DVDilPeT~RRVrL~k~pgsd-kpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.+++.|+..|.|+|.|. +.. .++||-|+.++ +.|. .|++|++..-|
T Consensus 8 ~~e~~~~~~~~v~l~k~-~~~~~~~G~~v~~~~-----~~~~---~gv~V~~V~~~ 54 (114)
T 2d8i_A 8 EIEICPKVTQSIHIEKS-DTAADTYGFSLSSVE-----EDGI---RRLYVNSVKET 54 (114)
T ss_dssp CCCSSCCEEEEEEEECS-CTTTCCCCCEEEEEE-----ETTE---EEEEEEECCTT
T ss_pred ceEeccCceEEEEEEeC-CCCccccCEEEEecC-----cCCc---CCEEEEEeCCC
Confidence 47889999999999999 543 47999998743 2332 57888876543
No 20
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=86.65 E-value=0.66 Score=31.13 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=28.6
Q ss_pred eccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 105 DVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 105 DilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
+-+|...|.|.|.|. + .+|||.+..|.. -+|++|+...-
T Consensus 6 ~~~~~~~~~v~l~k~-~--~glG~~~~~~~~----------~~gv~V~~V~~ 44 (104)
T 3i4w_A 6 EDIPREPRRIVIHRG-S--TGLGFNIVGGEX----------GEGIFISFILA 44 (104)
T ss_dssp CCCCSSCEEEEEECB-T--TBTSEEEEECC-----------CCCEEEEEECT
T ss_pred CCCCCccEEEEEEeC-C--CccCEEEECCCC----------CCCEEEEEECC
Confidence 347888999999998 4 579999998753 25777776543
No 21
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=86.26 E-value=0.81 Score=30.55 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=25.4
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+.|.|+|.|.|| .+|||.|+.+. -.|++|++..-|
T Consensus 1 ~~r~V~l~K~~~--~~lG~~i~~~~-----------~~~~~I~~V~~g 35 (88)
T 1kwa_A 1 RSRLVQFQKNTD--EPMGITLKMNE-----------LNHCIVARIMHG 35 (88)
T ss_dssp CCEEEEEEECSS--SCCCEEEECSC-----------GGGEEEEEECTT
T ss_pred CeEEEEEEeCCC--CceeEEEEeCC-----------CCCEEEEEECCC
Confidence 358899999865 78999999741 136778776543
No 22
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=85.60 E-value=0.82 Score=31.69 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=31.5
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-.|.|.|.|.++ +.|||-|+.|.........=+..+|++|++..-|
T Consensus 15 ~~~~v~l~k~~~--~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~ 60 (117)
T 2ehr_A 15 PPRIVEIFREPN--VSLGISIVGGQTVIKRLKNGEELKGIFIKQVLED 60 (117)
T ss_dssp CCEEEEECCCSS--SCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSS
T ss_pred CCEEEEEEeCCC--CccCEEEeCCcccccccccCCCcCCEEEEEeCCC
Confidence 346788888743 7999999988765432222245679999987644
No 23
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.97 E-value=1.1 Score=30.01 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=25.9
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
|+.+|.|+|.|.++ .+|||.+++. -.|++|++..-
T Consensus 4 ~~~~r~v~l~k~~~--~~lG~~i~~~------------~~~v~V~~V~~ 38 (91)
T 2e7k_A 4 GSSGRMVGIRKTAG--EHLGVTFRVE------------GGELVIARILH 38 (91)
T ss_dssp CCCSCBCCBCCCTT--CCCCEEEEES------------SSSEEEEEECS
T ss_pred CCCcEEEEEEECCC--CcEeEEEEec------------CCCEEEEEECC
Confidence 56788999999745 7899999872 24677776543
No 24
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=82.66 E-value=1.3 Score=30.83 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=19.2
Q ss_pred ccccceeeeccCCCCCCceeEEEeeC
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDG 133 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdG 133 (161)
.+..|.|+|.|.++ .+|||.++.+
T Consensus 23 ~~~~~~v~l~k~~~--~~lG~~i~~~ 46 (113)
T 1va8_A 23 GETVKIVRIEKARD--IPLGATVRNE 46 (113)
T ss_dssp TEECEEEEEEECTT--CCCCEEEEEC
T ss_pred CCceEEEEEEeCCC--CceeEEEEeC
Confidence 35788899999843 6899999876
No 25
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=82.45 E-value=0.9 Score=32.42 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=31.2
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-|...|.|.|.|.++ .+|||-|+.|..- -+.-.|+||++..-|
T Consensus 21 ~~~~~~~v~l~k~~~--~~lGf~i~gg~~~------~~~~~gv~V~~V~~g 63 (118)
T 3b76_A 21 QSMHEKVVNIQKDPG--ESLGMTVAGGASH------REWDLPIYVISVEPG 63 (118)
T ss_dssp EEEEEEEEEEECCTT--CCCCEEEEECSCS------TTCCCCEEEEEECTT
T ss_pred CCCCcEEEEEEeCCC--CccCEEEecCCCC------CCCCCCEEEEEECCC
Confidence 466678899987744 7999999988641 144578898886644
No 26
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=81.89 E-value=1.2 Score=30.46 Aligned_cols=40 Identities=28% Similarity=0.209 Sum_probs=26.6
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-|...|+|.|.|.++ ..|||.++.|.. .-.|++|++..-|
T Consensus 6 ~~~~~~~v~l~~~~~--~~lG~~l~~g~~---------~~~~~~V~~V~~~ 45 (103)
T 2dc2_A 6 GVGPIRKVLLLKEDH--EGLGISITGGKE---------HGVPILISEIHPG 45 (103)
T ss_dssp ---CEEEEEEECCSS--SCCCEEEEEEGG---------GTEEEEEEEECTT
T ss_pred CCCCcEEEEEEeCCC--CccCEEEEeccC---------CCCCEEEEEECCC
Confidence 356789999999743 799999997642 2346777766543
No 27
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=81.61 E-value=0.95 Score=32.15 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=25.4
Q ss_pred eEEEeeccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 100 QIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 100 aIiDVDilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+--+..--|...|.|.|.|.++ .+|||-|+.|...- ..-.|+||++..-|
T Consensus 14 ~~~~~~s~~~~~~~v~l~k~~~--~~lGf~i~gg~~~~------~~~~~~~V~~V~~~ 63 (120)
T 2iwo_A 14 GTENLYFQSMGLRTVEMKKGPT--DSLGISIAGGVGSP------LGDVPIFIAMMHPT 63 (120)
T ss_dssp -----------CEEEEEEC------CCCEEEEEEEEET------TEEEEEEEEEECTT
T ss_pred ccccCCCCCCCcEEEEEEcCCC--CCCCEEEecccCCC------CCCCCEEEEEECCC
Confidence 3334444566789999999854 79999999875421 12457888876544
No 28
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=80.13 E-value=1.4 Score=29.90 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=27.8
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
||..+.|+|.|.+ .+|||-|+.|..-.. ...-.|++|+...-
T Consensus 1 ~e~~~~v~l~k~~---~glG~~i~gg~~~~~----~~~~~gv~V~~V~~ 42 (105)
T 2awx_A 1 MEKIMEIKLIKGP---KGLGFSIAGGVGNQH----IPGDNSIYVTKIIE 42 (105)
T ss_dssp --CEEEEEEECBT---TBSSEEEEECBTSCS----BTTBCCEEEEEECT
T ss_pred CCeEEEEEEEECC---CCCCEEEeCccCCCC----CCCCCCEEEEEECC
Confidence 6788999999984 589999998754211 12235788877543
No 29
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=79.58 E-value=2 Score=29.49 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=31.0
Q ss_pred ccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 106 VVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 106 ilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
..+...|.|+|.|. + ..|||.|+.|.+ ......+|++|++.+-|
T Consensus 11 ~~~~~~~~v~l~k~-~--~glG~~i~~~~~-----~~~~~~~g~~V~~v~~~ 54 (108)
T 2d92_A 11 LWSPEVKIVELVKD-C--KGLGFSILDYQD-----PLDPTRSVIVIRSLVAD 54 (108)
T ss_dssp SSCSSCEEEEEEEC-S--SCCSEEEEEEEC-----SSCTTCEEEEEEEECTT
T ss_pred ccCCceEEEEEEEC-C--CccCEEEecccc-----cCCCCCCCEEEEEECCC
Confidence 34556788999999 4 589999998754 11124578898887654
No 30
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=78.62 E-value=1.9 Score=29.24 Aligned_cols=42 Identities=33% Similarity=0.373 Sum_probs=30.8
Q ss_pred EeeccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 103 DVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 103 DVDilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
+=++.|...|.|.|.|.++ ..|||-++.|.. .-.|++|++..
T Consensus 8 ~~~~~~~~~~~v~l~k~~~--~~lG~~~~~~~~---------~~~g~~V~~V~ 49 (104)
T 1wi2_A 8 NNELTQFLPRIVTLKKPPG--AQLGFNIRGGKA---------SQLGIFISKVI 49 (104)
T ss_dssp CCCCCSSCCEEEEECCCTT--CCCSEEEECCSS---------SCCCCEEEEEC
T ss_pred ccCcCCCCCEEEEEEeCCC--CCccEEEEcccC---------CCCCEEEEEeC
Confidence 4467788899999999854 689999998743 12566776654
No 31
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=77.73 E-value=2.5 Score=27.59 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=27.4
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
.|+..+.|.|.|. +....|||.++.|.. ..|++|+...
T Consensus 3 ~~~~~~~v~l~k~-~~~~~~G~~~~~~~~----------~~gv~V~~V~ 40 (91)
T 1m5z_A 3 TPVELHKVTLYKD-SGMEDFGFSVADGLL----------EKGVYVKNIR 40 (91)
T ss_dssp SCCEEEEEEEECC-TTCSSSSEEEEECTT----------SSCEEEEEEC
T ss_pred CCcceEEEEEEEC-CCCCCccEEEEeccC----------CCCEEEEEEC
Confidence 3667788999998 555679999988642 2567776654
No 32
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=77.40 E-value=3.1 Score=28.94 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=32.5
Q ss_pred cccccceeeeccCCC----CCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPN----SERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pg----sdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.|.++|+|+|.|.+. +...|||-|+.|.. ++ +...-+|++|++.+-|
T Consensus 9 ~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~---~~-~~~~~~g~~V~~v~~~ 59 (117)
T 1ujd_A 9 YIFPHARIKITRDSKDHTVSGNGLGIRIVGGKE---IP-GHSGEIGAYIAKILPG 59 (117)
T ss_dssp CSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEE---CS-SSSSCEEEEEEEECTT
T ss_pred CCCceEEEEEEecCcccCCCCCcccEEEeCCCC---CC-cccCCcCEEEEEECCC
Confidence 567889999999852 24789999987753 11 1223468999887654
No 33
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=76.99 E-value=3 Score=28.93 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=29.2
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-|+..|.|.|.|. ..|||-|+-|... ..-+|++|++.+-|
T Consensus 12 ~~~~~~~v~l~k~----~glG~~i~gg~~~-------~~~~~~~V~~v~~~ 51 (109)
T 1wi4_A 12 RDPAFRVITVTKE----TGLGLKILGGINR-------NEGPLVYIHEVIPG 51 (109)
T ss_dssp CCTTEEEEEECCS----SCCCEEEEECSSS-------SSCSSEEEEEECTT
T ss_pred CCCcEEEEEEeCC----CccCEEEEeccCC-------CCCCCEEEEEeCCC
Confidence 4567788999885 6899999988542 12358999887654
No 34
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=76.87 E-value=2.8 Score=27.68 Aligned_cols=36 Identities=19% Similarity=0.064 Sum_probs=26.4
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
..+|.|.|. ++..+|||-+..+.. -+|++|+...-|
T Consensus 4 ~~~v~l~k~-~~~~~lG~~~~~~~~----------~~gv~V~~V~~~ 39 (95)
T 2vwr_A 4 ILQVALHKR-DSGEQLGIKLVRRTD----------EPGVFILDLLEG 39 (95)
T ss_dssp EEEEEEECS-STTCCCCEEEEECSS----------SCSEEEEEECTT
T ss_pred EEEEEEEEC-CCCCcccEEEEeccC----------CCCEEEEEeCCC
Confidence 457889997 566899999987643 368888876543
No 35
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=74.66 E-value=3.5 Score=29.35 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=29.1
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+.|.|.+.|.+ ...|||-+++++.......+++...|++|+...-|
T Consensus 24 ~p~~v~l~k~~--~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~ 69 (123)
T 2iwq_A 24 QPRRVELWREP--SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLED 69 (123)
T ss_dssp CCEEEEECCCT--TSCCSEEEEECC---------CCCCSEEEEEECSS
T ss_pred CCEEEEEEecC--CCCccEEEEeccCccccccccCCCCCEEEEEECCC
Confidence 45778888863 36799999998876655556677789999987644
No 36
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=71.33 E-value=3.8 Score=28.45 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=24.8
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-+|.|.|.|.+| .+|||.++.+. -.|++|++.+-|
T Consensus 12 ~~~~v~l~K~~~--~~lG~~l~~~~-----------~~gv~V~~V~~g 46 (97)
T 2ejy_A 12 MVRLIQFEKVTE--EPMGICLKLNE-----------KQSCTVARILHG 46 (97)
T ss_dssp -CEEEEEEECSS--SCCSEEEEECT-----------TCCEEEEEECSS
T ss_pred ccEEEEEEeCCC--CCeeEEEEeCC-----------CCCEEEEEeCCC
Confidence 468899999866 78999998532 147777776544
No 37
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=70.64 E-value=3.7 Score=28.23 Aligned_cols=37 Identities=24% Similarity=0.154 Sum_probs=26.6
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+.|.|+|.|. + .+|||.|+-|... ..|++||++..-|
T Consensus 6 ~~~~v~l~k~-~--~glG~~i~gg~~~--------~~~~~~I~~v~~~ 42 (103)
T 1ufx_A 6 SGTLVRVKKS-A--ATLGIAIEGGANT--------RQPLPRIVTIQRG 42 (103)
T ss_dssp SSEEEEEECC-S--SSCCEEEECBTTS--------SCSSCEEEEECTT
T ss_pred ceEEEEEEcC-C--CcCCeEEECCCCC--------CCCcEEEEEeCCC
Confidence 5678999776 4 6899999877532 2477888886544
No 38
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=70.38 E-value=7.1 Score=29.18 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=52.2
Q ss_pred ecceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhh
Q psy16076 22 YHKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 22 ~~~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~s 93 (161)
...-+.||=-|.+|=|=+.+.| |.+|+|...-+. ..-+-...+.|+. +-=++||.|-|++-||+.-
T Consensus 17 ~q~dvRIKfE~~gEkRIi~f~R--Pv~f~el~~kv~---~afGq~ldl~y~n-nEL~iPL~~Q~DLDkAvel 82 (100)
T 2npt_B 17 KQNDVRVKFEHRGEKRILQFPR--PVKLEDLRSKAK---IAFGQSMDLHYTN-NELVIPLTTQDDLDKAVEL 82 (100)
T ss_dssp --CCEEEEEEETTEEEEEEECS--SCCHHHHHHHHH---HHHTSCEEEEEEE-TTEEEECCCHHHHHHHHHH
T ss_pred cccceEEEEEecCceEEEecCC--CccHHHHHHHHH---HHhCCeeeeEEec-ceeEEecccHHHHHHHHHH
Confidence 3467889999999988888887 589999776444 3445678899995 5678999999999999976
No 39
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=70.19 E-value=3.8 Score=27.24 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=24.7
Q ss_pred cceeeeccCCCCCCceeEEEee-CceeEecCCccccccceEEEeeeec
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRD-GTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRd-GtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.|.|.|.|.+ ..+|||-|+. |...+ .|-+.-+|++|+...-|
T Consensus 5 ~r~v~l~k~~--~~~~Gf~l~~~g~~~~---~~~~~~~~~~V~~V~~~ 47 (96)
T 2ego_A 5 RKVLTLEKGD--NQTFGFEIQTYGLHHR---EEQRVEMVTFVARVHES 47 (96)
T ss_dssp EEEEEEECCT--TCCCSEEEEEEEC----------CCEEEEEEEECTT
T ss_pred cEEEEEEeCC--CCCccEEEEecccccc---CCCCCCCCeEEEEECCC
Confidence 5779999984 3699999986 33222 23333467777766533
No 40
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=69.09 E-value=4.5 Score=26.74 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=25.5
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
-+|.|.|.|. + ..|||.++.+. |++.-.|++|+...
T Consensus 3 ~~r~v~l~k~-~--~~~G~~l~~~~-------~~~~~~g~~V~~V~ 38 (96)
T 2v90_A 3 KPRCLHLEKG-P--QGFGFLLREEK-------GLDGRPGQFLWEVD 38 (96)
T ss_dssp CCEEEEEECB-T--TBSCEEEEEEE-------CTTSCEEEEEEEEC
T ss_pred CCEEEEEEeC-C--CcccEEEEecc-------CCCCCCCeEEEEEC
Confidence 4688999998 4 48999998742 44445577777654
No 41
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=68.99 E-value=5.5 Score=27.89 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=29.5
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-|+..|.|+|.|. + ..|||.|+.|.... ..+...|++|+...-|
T Consensus 21 ~~~~~~~v~l~k~-~--~glG~~i~gg~~~~----~~~~~~gv~V~~V~~g 64 (117)
T 2byg_A 21 QSMTVVEIKLFKG-P--KGLGFSIAGGVGNQ----HIPGDNSIYVTKIIDG 64 (117)
T ss_dssp EEEEEEEEEEECB-T--TBSSEEEEECTTSC----SBTTBCCEEEEEECTT
T ss_pred CCCceEEEEEEeC-C--CCcCEEEEcccCCC----CccCCCCEEEEEECCC
Confidence 3567788888887 3 68999999875321 1123457888876544
No 42
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=68.59 E-value=5.5 Score=26.54 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=23.6
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+|.|.|.|.+ ...|||.+++++..-..-.+++...|++|+...-|
T Consensus 5 p~~v~l~~~~--~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~ 49 (103)
T 2fcf_A 5 PRRVELWREP--SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLED 49 (103)
T ss_dssp CEEEEECCCC---CCCCEEEECCCC-------------EEEEEECSS
T ss_pred CEEEEEEeCC--CCceeEEEEccCCCCcccccCCCCCCEEEEEeCCC
Confidence 3667777763 36799999998776555456666789999987544
No 43
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=68.57 E-value=4.3 Score=29.13 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=27.7
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeecC
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIND 158 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~~ 158 (161)
...+|.|.|.|. . .+|||=|.++. . ..+||+|..-|+
T Consensus 3 ~g~~k~V~l~K~-~--~~LG~tI~~~g------~-----g~~~I~rI~~gg 39 (95)
T 3gge_A 3 KGIEKEVNVYKS-E--DSLGLTITDNG------V-----GYAFIKRIKDGG 39 (95)
T ss_dssp CEEEEEEEEECC-S--SCCCEEEECSS------S-----SCCEEEEECTTS
T ss_pred CCeEEEEEEEEC-C--CCceEEEEcCC------C-----CcEEEEEEcCCC
Confidence 346788999998 4 79999998741 2 348999987654
No 44
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=68.55 E-value=6.3 Score=25.68 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=25.4
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
..|.|+|.|.++ .+|||.++.|. +.-.|++|+...-
T Consensus 4 ~~~~v~l~k~~~--~~lG~~i~~~~---------~~~~g~~V~~V~~ 39 (90)
T 1qav_A 4 QRRRVTVRKADA--GGLGISIKGGR---------ENKMPILISKIFK 39 (90)
T ss_dssp SCEEEEEECCTT--TCCCEEEEEEG---------GGTEEEEEEEECT
T ss_pred ccEEEEEEeCCC--CCcCEEEEccc---------CCCCCEEEEEECC
Confidence 468899999733 69999998653 2335777776543
No 45
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=68.41 E-value=5.5 Score=27.49 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=26.2
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+..|.|+|.|. ...+|||.++.|. +...|++|++..-|
T Consensus 14 ~~~~~v~l~k~--~~~~~G~~l~gg~---------~~~~~v~V~~V~~~ 51 (119)
T 2cs5_A 14 DNLVLIRMKPD--ENGRFGFNVKGGY---------DQKMPVIVSRVAPG 51 (119)
T ss_dssp SCCEEEEECCC--SSSCCSEEEEEEG---------GGTEEEEEEEECSS
T ss_pred CCeEEEEEEeC--CCCCcCEEEeccc---------CCCCCeEEEEECCC
Confidence 44677999986 3468999999764 23356777766543
No 46
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=67.62 E-value=3.7 Score=26.90 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=19.8
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCce
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTS 135 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtS 135 (161)
.|...|.|+|.|. + ..+||.++.+..
T Consensus 2 sp~~~r~v~l~~~-~--~~~G~~l~~~~~ 27 (95)
T 3r68_A 2 SPHQPRVVVIKKG-S--NGYGFYLRAGPE 27 (95)
T ss_dssp CCCCCEEEEEECB-T--TBCSCEEEEC--
T ss_pred CCCCcEEEEEecC-C--CcccEEEEecCC
Confidence 4778899999997 4 589999987653
No 47
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=66.81 E-value=12 Score=27.63 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=51.4
Q ss_pred ceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhh
Q psy16076 24 KYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 24 ~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~s 93 (161)
+-+.||=-|.+|=|=+.++| |.+|+|...-+.. .-+-...+.|+. +-=++||.|-|++-||+..
T Consensus 3 ~dvRIKfE~~gEKRIi~f~R--Pvkf~dl~qkv~~---afGq~ldl~y~n-nEL~iPL~~Q~DLDkAvel 66 (94)
T 2jrh_A 3 SDVRIKFEHNGERRIIAFSR--PVKYEDVEHKVTT---VFGQPLDLHYMN-NELSILLKNQDDLDKAIDI 66 (94)
T ss_dssp CCEEEEEEETTEEEEEEECS--SCCHHHHHHHHHH---HHCSSEEEEEEC-SSCEEECCSHHHHHHHHHH
T ss_pred CceEEEEEecCceEEEecCC--CccHHHHHHHHHH---HhCCeeeeEEec-ceeEEeccCHHHHHHHHHH
Confidence 45788989999988888877 5899997775543 345578899995 5688999999999999976
No 48
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=66.51 E-value=5 Score=26.40 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=28.7
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
|.-.+.|.|.|. + ..|||-++.|.... ++-.|++|+...-|
T Consensus 3 ~g~~~~v~l~k~-~--~~lG~~i~~g~~~~------~~~~g~~V~~V~~~ 43 (96)
T 1d5g_A 3 PGDIFEVELAKN-D--NSLGISVTGGVNTS------VRHGGIYVKAVIPQ 43 (96)
T ss_dssp TTCEEEEEEECS-S--SSCCEEEECCSSSC------SSSSCCEEEEECTT
T ss_pred CCCEEEEEEEeC-C--CCCCEEEECCCCCC------CCcCCEEEEEeCCC
Confidence 456678899887 4 79999999875432 23467888876543
No 49
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=66.34 E-value=6.4 Score=26.26 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=28.7
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
-|+..|.|.|.|. +....|||-++.+.. .-.|++|+...
T Consensus 5 ~~~~~~~v~l~~~-~~~~~lG~~~~~~~~---------~~~g~~V~~V~ 43 (101)
T 1uez_A 5 SSGEVRLVSLRRA-KAHEGLGFSIRGGSE---------HGVGIYVSLVE 43 (101)
T ss_dssp CSCCCEEECCCCC-CTTTCSSEEEEECTT---------TTCCEEEEEEC
T ss_pred CCCccEEEEEEEC-CCCCcccEEEeCCCC---------CCCCEEEEEEC
Confidence 3677899999998 778899999987742 11466666654
No 50
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=64.78 E-value=4.1 Score=33.55 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=27.9
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-.|.|+|.|.++ ..|||-|+.|. +.-.||||++.+-|
T Consensus 77 ~~r~V~L~k~~~--~glGf~I~gg~---------d~~~gi~V~~V~~g 113 (263)
T 1z87_A 77 QRRRVTVRKADA--GGLGISIKGGR---------ENKMPILISKIFKG 113 (263)
T ss_dssp SSEEECCCTTTT--CCCCCEEEEET---------TTTEEEEEEECCTT
T ss_pred ccEEEEEEeCCC--CCEeEEEeecc---------CCCCCEEEEEECCC
Confidence 468899999843 78999998654 34468899887654
No 51
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.73 E-value=7 Score=25.43 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=24.0
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
.+|.|+|.|. + .+|||.++.|.. .-.|++|+...
T Consensus 5 ~~r~v~l~k~-~--~glG~~l~~~~~---------~~~~~~V~~V~ 38 (93)
T 2dkr_A 5 SSGVVELPKT-D--EGLGFNIMGGKE---------QNSPIYISRVI 38 (93)
T ss_dssp CSCEEEEECC-T--TCCCEEEECSSS---------SSCCCEEEEEC
T ss_pred CCEEEEEEeC-C--CCccEEEecccC---------CCCCEEEEEEC
Confidence 4688999987 4 799999986532 23567776654
No 52
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=64.60 E-value=6.6 Score=25.61 Aligned_cols=41 Identities=27% Similarity=0.181 Sum_probs=26.5
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
++.|.|.|.|. + .+|||.|+.|...... ..-.|++|+...-
T Consensus 2 ~~~~~v~l~k~-~--~g~G~~i~gg~~~~~~----~~~~gv~V~~V~~ 42 (94)
T 2fe5_A 2 MTIMEVNLLKG-P--KGLGFSIAGGIGNQHI----PGDNSIYITKIIE 42 (94)
T ss_dssp CCEEEEEEECC-T--TCSCEEEEECBTSCSB----TTBCCEEEEEECT
T ss_pred cEEEEEEEEEC-C--CCCCEEEEcccCCCCC----CCCCCEEEEEECC
Confidence 36788999988 3 5799999987532111 1234777776543
No 53
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=63.68 E-value=6.6 Score=27.39 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=27.9
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+.+.|.|.|.|.++ ..|||.|+.|.. ..+|++|+...-|
T Consensus 17 ~~~~~~v~l~k~~~--~~lG~~i~gg~~---------~~~~~~V~~v~~g 55 (125)
T 3hpk_A 17 PTVPGKVTLQKDAQ--NLIGISIGGGAQ---------YCPCLYIVQVFDN 55 (125)
T ss_dssp CEEEEEEEEECCTT--SCCCEEEEECSS---------CCSSEEEEEECTT
T ss_pred cCCCeEEEEEeCCC--CCcCEEEeccCC---------CCCCEEEEEeCCC
Confidence 34678888988743 689999988753 3377888776543
No 54
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=62.07 E-value=10 Score=26.05 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=25.9
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
.|..+|.|.|.|. . ..|||.++.+.. -.|++|+...
T Consensus 11 ~~~~~~~v~l~k~-~--~glG~~l~~~~~----------~~gv~V~~V~ 46 (119)
T 1tp5_A 11 IPREPRRIVIHRG-S--TGLGFNIVGGED----------GEGIFISFIL 46 (119)
T ss_dssp CCCSCEEEEEECT-T--SCCCEEEEECGG----------GCCEEEEEEC
T ss_pred CCCccEEEEEEEC-C--CCccEEEecCCC----------CCCEEEEEEC
Confidence 4678899999998 3 349999997752 2566666544
No 55
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=61.83 E-value=13 Score=28.11 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=51.6
Q ss_pred cceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhccCCCCCeEEEEecCCCCceeccCccchHHHHhh
Q psy16076 23 HKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 23 ~~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~GDLLPINNDDNf~kAl~s 93 (161)
-.-+.||=-|.+|=|=+.++| |.+|+|...-+.. .-+-+..+.|+. +--++||.|-|++-||+..
T Consensus 29 q~dvRIKfE~~gEKRIiqf~R--Pvkf~dl~qkv~~---afGq~ldl~y~n-nEL~IPL~~Q~DLDkAvel 93 (111)
T 2c60_A 29 QSDVRIKFEHNGERRIIAFSR--PVKYEDVEHKVTT---VFGQPLDLHYMN-NELSILLKNQDDLDKAIDI 93 (111)
T ss_dssp -CCEEEEEEETTEEEEEEECS--SCCHHHHHHHHHH---HHSSCCEEEEEC-SSCEEECCSHHHHHHHHHH
T ss_pred ccceEEEEEecCceEEEecCC--CccHHHHHHHHHH---HhCCeeeeEEec-ceEEEecccHHHHHHHHHH
Confidence 466889999999988888877 5899998775554 344567889995 5688999999999999976
No 56
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=61.34 E-value=7.9 Score=25.44 Aligned_cols=41 Identities=29% Similarity=0.231 Sum_probs=27.4
Q ss_pred ceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 112 RRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 112 RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
..|+|.|.+ .|||.|+.|...+-+|.. +...|++|+...-|
T Consensus 5 ~~v~l~~~~----~lG~~i~gg~~~~~~p~~-~~~~gv~V~~V~~~ 45 (95)
T 1mfg_A 5 IRVRVEKDP----ELGFSISGGVGGRGNPFR-PDDDGIFVTRVQPE 45 (95)
T ss_dssp EEEEEECSS----SCSEEEEECBTSCCCSSS-TTCCCEEEEEECTT
T ss_pred EEEEECCCC----CCCEEEeCCcCccCCccc-cCCCCEEEEEECCC
Confidence 457777773 699999988754434432 34568888876544
No 57
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=61.30 E-value=3 Score=28.74 Aligned_cols=38 Identities=16% Similarity=-0.075 Sum_probs=27.3
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.|.|.|.|.++ ..|||.|+.|.+ .+..+|++|++..-|
T Consensus 6 ~~~v~l~k~~~--~~lG~~i~g~~~-------~~~~~gv~V~~V~~~ 43 (108)
T 3cbz_A 6 IITVTLNMEKY--NFLGISIVGQSN-------ERGDGGIYIGSIMKG 43 (108)
T ss_dssp EEEEEECHHHH--CCCCEEEEEECS-------STTCCEEEEEEECTT
T ss_pred EEEEEEEeCCC--CccCEEEEcCcC-------CCCCCCEEEEEECCC
Confidence 46788887533 689999998753 234589999987644
No 58
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=60.85 E-value=6.8 Score=28.03 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=28.6
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+....|.|++.|.+ ..+|||-|+.|.... +..+|+||++..-|
T Consensus 33 l~~~~~~~~i~k~~--~~~lG~~i~gg~~~~------~~~~gv~V~~V~~g 75 (131)
T 1wfg_A 33 LNKRLKDGSVPRDS--GAMLGLKVVGGKMTE------SGRLCAFITKVKKG 75 (131)
T ss_dssp EECSCTTSCCCSCS--CTTTTEEEEEEEECS------SSCEEEEEEEECTT
T ss_pred EeccceeEEEecCC--CCCCCEEEecCccCC------CCCCCEEEEEECCC
Confidence 43445567777763 479999998776542 22468999887644
No 59
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=60.67 E-value=8.3 Score=26.05 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=29.5
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
..|.|.|.|. ..+|||-|+.|....-.+.+ +...|++|++..-|
T Consensus 8 ~~~~v~l~k~---~~~lG~~i~g~~~~~~~~~~-~~~~gv~V~~V~~~ 51 (107)
T 1uhp_A 8 KSLTLVLHRD---SGSLGFNIIGGRPSVDNHDG-SSSEGIFVSKIVDS 51 (107)
T ss_dssp EEEEEEECCS---SSCCSEEEECCCSCCCCTTS-SCSCCCEEEEECSS
T ss_pred EEEEEEEEeC---CCccCEEEEcCCCCcccccc-cCCCCEEEEEeCCC
Confidence 4567888886 37899999988753222222 34578999887643
No 60
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=59.26 E-value=7.8 Score=27.52 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=27.8
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
++..|.|+|.|. + .+|||-|+.|... ++ .-.|++|++..-|
T Consensus 27 ~~~~~~v~l~k~-~--~glG~~i~gg~~~---~~---~~~~i~I~~V~~g 67 (130)
T 1i16_A 27 EATVCTVTLEKM-S--AGLGFSLEGGKGS---LH---GDKPLTINRIFKG 67 (130)
T ss_dssp SEEEEEEEEETT-S--SSTTEEEECCCCC---SS---SCCCCEEEEECSS
T ss_pred CCcEEEEEEEcC-C--CccCEEEecCcCC---CC---CCCCEEEEEECCC
Confidence 456788999987 3 6899999976531 11 2346888876654
No 61
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=58.89 E-value=4.4 Score=28.43 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=28.6
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+...|.|.|.|.++ ..|||-|+.|.... ...+|++|++..-|
T Consensus 23 ~~~~~~v~l~k~~~--~~lG~~i~g~~~~~------~~~~gv~V~~V~~~ 64 (128)
T 2db5_A 23 GRQIEYIDIERPST--GGLGFSVVALRSQN------LGKVDIFVKDVQPG 64 (128)
T ss_dssp TCEEEEEEEECCSS--SCCCCEEEEEECSS------SSCEEEEEECCCTT
T ss_pred cCceEEEEEEECCC--CccCEEEecccCCC------CCCCCEEEEEECCC
Confidence 45677788988733 79999998765321 23468888876543
No 62
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=56.87 E-value=12 Score=24.21 Aligned_cols=33 Identities=18% Similarity=0.016 Sum_probs=23.5
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
-+|.|.|.|. + .++||.++.|.. -+|++|+...
T Consensus 3 ~~r~v~l~r~-~--~g~G~~~~~~~~----------~~g~~V~~V~ 35 (91)
T 1g9o_A 3 LPRLCCLEKG-P--NGYGFHLHGEKG----------KLGQYIRLVE 35 (91)
T ss_dssp CCEEEEEECB-T--TBCCEEEEECTT----------CSSEEEEEEC
T ss_pred ccEEEEEEeC-C--CcccEEEEecCC----------CCCEEEEEEC
Confidence 4788999998 3 479999987652 2466666654
No 63
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=56.31 E-value=12 Score=28.11 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=27.5
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.|...|.|.|.|.++ .+|||.|+.|. +.-+|++|+...-|
T Consensus 81 ~~~~~~~v~l~k~~~--~~lG~~i~~~~---------~~~~~~~V~~V~~g 120 (192)
T 3k1r_A 81 RSRKLKEVRLDRLHP--EGLGLSVRGGL---------EFGCGLFISHLIKG 120 (192)
T ss_dssp CCSSCEEEEEETTST--TCCCEEEEEEG---------GGTEEEEEEEECTT
T ss_pred CCCceEEEEEEeCCC--CceeEEEEccc---------ccCCCEEEEEECCC
Confidence 355678899999843 58999998653 23457777765543
No 64
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=55.60 E-value=5.6 Score=28.90 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=32.2
Q ss_pred ccceeeeccCCCCCC--ceeEEEeeCceeEe--cCCcc-ccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSER--PLGFYIRDGTSLRV--TSTGL-DKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdk--pLGFYIRdGtSvRv--t~~Gl-EKvPGiFISrlV~~ 157 (161)
..|+|.|.|. |... .|||.|..|...-. .+.++ +...|++|+...-|
T Consensus 23 ~~~~v~l~~~-~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~ 74 (139)
T 2vz5_A 23 MVQRVEIHKL-RQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEG 74 (139)
T ss_dssp EEEEEEEECE-EETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTT
T ss_pred ceEEEEEEEc-CCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCC
Confidence 5688999998 6433 79999998866321 23333 44579999886544
No 65
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=55.57 E-value=12 Score=26.08 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=32.8
Q ss_pred EeeccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 103 DVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 103 DVDilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
+++--|...+.+++.|. +....|||.++..+.- +...|++|+...-
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~lG~~~~~~~~~-------~~~~gv~V~~V~~ 57 (124)
T 1wh1_A 12 EMDREELELEEVDLYRM-NSQDKLGLTVCYRTDD-------EDDIGIYISEIDP 57 (124)
T ss_dssp CCCCSSCEECCBCCCCS-STTCCCCEEEECCCCC-------SSCCCEEEEEECS
T ss_pred cCCcCcceEEEEEEEec-CCCCcccEEEEecCCC-------CCCCCEEEEEECC
Confidence 34556778889999999 8777899999876532 2246777776543
No 66
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=55.43 E-value=11 Score=25.97 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=27.7
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
..+.|.|.|.+ ...|||-|+.|..- +..-+...|++|+...-|
T Consensus 14 ~~~~v~l~k~~--~~glG~~i~gg~~~---~~~~~~~~gv~V~~V~~~ 56 (117)
T 2csj_A 14 EQYTVTLQKDS--KRGFGIAVSGGRDN---PHFENGETSIVISDVLPG 56 (117)
T ss_dssp EEEEEEEECCS--SSTTCEEEECCSSC---CCCSSCCCBCEEEEECTT
T ss_pred eEEEEEEEECC--CCccCEEEeCCcCC---ccccCCCCCEEEEEECCC
Confidence 45778898874 47999999987431 111113467888876543
No 67
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=55.34 E-value=14 Score=24.70 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=25.0
Q ss_pred ccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 106 VVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 106 ilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
+-.+..+.|+|.|.+ ..++||.+..|. +.-.|++|++..
T Consensus 13 ~~~~~~~~v~l~~~~--~~~~G~~~~gg~---------~~~~~~~V~~V~ 51 (107)
T 3nfk_A 13 IPHDNLVLIRMKPDE--NGRFGFNVKGGY---------DQKMPVIVSRVA 51 (107)
T ss_dssp ---CCCEEEEECCCT--TSCCCEEEEEEG---------GGTEEEEEEEEC
T ss_pred CCCCCEEEEEEEcCC--CCCCCEEEEccC---------CCCCCeEEEEEC
Confidence 345678889998873 369999998653 223466666654
No 68
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=55.09 E-value=11 Score=25.04 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=28.4
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+..|.|+|.|. + ..|||-|+.|... |. ...-+|++|+...-|
T Consensus 3 ~~~~~v~l~k~-~--~glG~~i~~g~~~---~~-~~~~~gv~V~~V~~~ 44 (102)
T 2i1n_A 3 FKYEEIVLERG-N--SGLGFSIAGGIDN---PH-VPDDPGIFITKIIPG 44 (102)
T ss_dssp EEEEEEEEECB-T--TBTSEEEEECTTS---CS-STTCCCEEEEEECTT
T ss_pred ceEEEEEEEEC-C--CcCCEEEEcccCC---CC-cCCCCCEEEEEECCC
Confidence 45688999987 3 5899999987542 11 123468888876543
No 69
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=53.83 E-value=12 Score=25.64 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=26.4
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
++..+.|.|.|.+ ..+|||.|+.|... ..+|++|+...-|
T Consensus 13 ~~~~~~v~l~~~~--~~~lG~~i~g~~~~--------~~~gv~V~~V~~~ 52 (119)
T 1x6d_A 13 LDGIHVTILHKEE--GAGLGFSLAGGADL--------ENKVITVHRVFPN 52 (119)
T ss_dssp CTTEEEEEEECCT--TSCCSEEEECCSSS--------SCSSCEEEEECSS
T ss_pred CCCeEEEEEEeCC--CCccCEEEeCCCCC--------CCCCEEEEEECCC
Confidence 4455667777763 48999999866431 2467888776543
No 70
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=53.27 E-value=9.3 Score=26.76 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=26.3
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-+|.|.|.|.+ .+|||-|+.|... ++| ..|++|++..-|
T Consensus 25 ~~~~v~L~k~~---~glGf~l~~g~~~---~~~---~~gv~V~~V~~~ 63 (117)
T 2fne_A 25 QCKSITLERGP---DGLGFSIVGGYGS---PHG---DLPIYVKTVFAK 63 (117)
T ss_dssp EEEEEEECCBT---TBTSEEEEEEEEE---TTE---EEEEEEEEECTT
T ss_pred ccEEEEEEeCC---CcccEEEecccCC---CCC---CCCEEEEEECCC
Confidence 35779999984 5799999987542 121 357777775533
No 71
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=53.09 E-value=12 Score=25.07 Aligned_cols=39 Identities=28% Similarity=0.151 Sum_probs=23.2
Q ss_pred eeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 113 RVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 113 RVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+|.|.|. +..|||-|+.|... +.-....+|++|+...-|
T Consensus 10 ~v~l~~~---~~glG~~l~~g~~~---~~~~~~~~gv~V~~V~~~ 48 (105)
T 1wha_A 10 VACLARS---ERGLGFSIAGGKGS---TPYRAGDAGIFVSRIAEG 48 (105)
T ss_dssp EEEECCC---TTCCSCEEECCTTS---CCSSTTCCSCEEEECCTT
T ss_pred EEEEEeC---CCccCEEEEeccCC---CcccCCCCCEEEEEeCCC
Confidence 3556665 35699999987642 111123467888776543
No 72
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=51.86 E-value=14 Score=23.93 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=23.7
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
.+.|.|.|.|+ .+|||.++.+.. -+|++|+...-
T Consensus 5 ~~~v~l~k~~~--~~lG~~~~~~~~----------~~gv~V~~V~~ 38 (92)
T 2qg1_A 5 TLTIGLQKKPG--KGLGLSIVGKRN----------DTGVFVSDIVK 38 (92)
T ss_dssp EEEEEEECCTT--SCCSEEEECCSS----------SCSCEEEEECT
T ss_pred EEEEEEEeCCC--CcccEEEEeccC----------CCCEEEEEECC
Confidence 45788888744 789999987642 25777776543
No 73
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.68 E-value=8.6 Score=26.60 Aligned_cols=45 Identities=24% Similarity=0.156 Sum_probs=29.9
Q ss_pred ccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 106 VVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 106 ilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.-+...|.|.|.|. . ..|||-|+.|..... .....|++|+...-|
T Consensus 13 ~~~~~~~~v~l~r~-~--~~lG~~i~~~~~~~~----~~~~~gv~V~~V~~~ 57 (120)
T 2eno_A 13 DYLVTEEEINLTRG-P--SGLGFNIVGGTDQQY----VSNDSGIYVSRIKEN 57 (120)
T ss_dssp CEEEEEEEEEEECC-S--SSCSEEEECCTTTCS----SSSCCSEEEEEECSS
T ss_pred CCCCceEEEEEEEC-C--CCCCEEEecccCCcc----ccCCCCEEEEEECCC
Confidence 34567888999998 3 799999998754211 012457888775543
No 74
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=49.95 E-value=9.5 Score=25.72 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=26.2
Q ss_pred cccceeeeccCCCCCCceeEEEe-----eCceeEecCCccccccceEEEeeeec
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIR-----DGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIR-----dGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.-.+.|.|.|. + .+|||-|+ .|.... +.-.|++|+...-|
T Consensus 8 ~~~~~v~l~k~-~--~~lG~~i~~~~~~gg~~~~------~~~~gv~V~~V~~~ 52 (108)
T 1q7x_A 8 GDIFEVELAKN-D--NSLGISVTVLFDKGGVNTS------VRHGGIYVKAVIPQ 52 (108)
T ss_dssp SSEEEEEEESS-S--CSCCEEESSSSSSBCBCTT------SSSCCCBEEEECTT
T ss_pred CcEEEEEEEEC-C--CCccEEEEEeccCCCcccc------CCCCCEEEEEECCC
Confidence 34567888887 4 68999999 443322 23467888776543
No 75
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=49.85 E-value=3.9 Score=34.66 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=30.4
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
-|+.+|.|.+.|.+| .+|||-|+.+ ..| +..||++|++..-|
T Consensus 201 ~~~~~~~V~i~k~~g--e~lG~~i~~~------~~g-~~~~g~~V~~V~~g 242 (388)
T 3suz_A 201 NSENCKELQLEKHKG--EILGVVVVES------GWG-SILPTVILANMMNG 242 (388)
T ss_dssp CSSCCEEEEECCCSS--CCCCCCCBCC----------CCSCCCBCCCCCCS
T ss_pred ccccceEEEEECCCC--CceeEEEEec------CCC-CcCCCEEEEeeCCC
Confidence 577899999999865 7899988873 233 34678888876654
No 76
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=49.43 E-value=14 Score=24.97 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=27.1
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
...+.|+|.|.+ ..|||-++.|... + ...+|++|+...-|
T Consensus 7 ~~~~~v~l~~~~---~glG~~l~~g~~~---~---~~~~gv~V~~V~~~ 46 (110)
T 1um1_A 7 GYVFTVELERGP---SGLGMGLIDGMHT---H---LGAPGLYIQTLLPG 46 (110)
T ss_dssp CCEEEEEEECCT---TCCCEEEEETTTS---T---TCCSSEEEEEECTT
T ss_pred CcEEEEEEEECC---CccCEEEeCCcCC---C---CCCCCEEEEEECCC
Confidence 345678888873 4799999987542 1 23578888876543
No 77
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=49.37 E-value=15 Score=24.35 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=27.1
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
|...|.|.|.|. . ..|||-++.|..-.. ...-.|++|+...
T Consensus 5 ~~~~~~v~l~~~-~--~~lG~~l~~g~~~~~----~~~~~gv~V~~V~ 45 (101)
T 2jik_A 5 LVTEEEINLTRG-P--SGLGFNIVGGTDQQY----VSNDSGIYVSRIK 45 (101)
T ss_dssp GEEEEEEEEECC-T--TCCCEEEEECTTSCS----BTTBCCEEEEEEC
T ss_pred CCccEEEEEEeC-C--CCCCEEEeccccCCC----ccCCCCEEEEEEC
Confidence 567889999997 3 789999998754210 0112467776654
No 78
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=49.34 E-value=18 Score=23.42 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=23.2
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
..|.|.|.|.+ ..+||-++.+.. .+|++|+...
T Consensus 4 ~~r~v~l~k~~---~g~G~~~~~~~~----------~~gv~V~~V~ 36 (90)
T 2he4_A 4 RPRLCHLRKGP---QGYGFNLHSDKS----------RPGQYIRSVD 36 (90)
T ss_dssp CCEEEEEECBT---TBCCEEEEECSS----------SSSEEEEEEC
T ss_pred CcEEEEEEECC---CCccEEEEccCC----------CCCEEEEEEC
Confidence 36889999873 479999987753 2466666554
No 79
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=48.28 E-value=21 Score=24.80 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=25.5
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
+.++|.|.|.|.+ ...|||-++.|.. ..+|++|+...-
T Consensus 22 ~~~~~~V~l~~~~--~~~lG~~l~~~~~---------~~~~~~V~~V~~ 59 (114)
T 2gzv_A 22 SMVPGKVTLQKDA--QNLIGISIGGGAQ---------YCPCLYIVQVFD 59 (114)
T ss_dssp CCCCEEEEEECCT--TSCCSEEEEECCC-----------CCEEEEEECT
T ss_pred cCCCEEEEEEECC--CCcEeEEEEeCCC---------CCCCEEEEEECC
Confidence 3468889998873 3569999987653 225677766543
No 80
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=47.86 E-value=18 Score=24.12 Aligned_cols=44 Identities=25% Similarity=0.156 Sum_probs=27.7
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeE---ecCCccccccceEEEeeee
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLR---VTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvR---vt~~GlEKvPGiFISrlV~ 156 (161)
..|.|.|.|. + ..|||-++.|.... .+..|-..-|+++|+...-
T Consensus 6 ~~r~v~l~k~-~--~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~ 52 (107)
T 3qe1_A 6 SPRVVRIVKS-E--SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLP 52 (107)
T ss_dssp CCEEEEEECB-T--TBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECT
T ss_pred CcEEEEEEEC-C--CCCCEEEEcccccCCcceeccccccCCceEEEEECC
Confidence 4578899998 3 27999998874321 1122333357888877543
No 81
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=46.95 E-value=22 Score=22.79 Aligned_cols=35 Identities=31% Similarity=0.283 Sum_probs=23.8
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
.|.|.|.|.+ ...|||.+..|.. .-.|++|++..-
T Consensus 3 ~~~v~l~~~~--~~~lG~~i~~~~~---------~~~~~~V~~V~~ 37 (87)
T 4e34_A 3 IRKVLLLKED--HEGLGISITGGKE---------HGVPILISEIHP 37 (87)
T ss_dssp CEEEEEECCT--TBCCCEEEEEEGG---------GTEEEEEEEECT
T ss_pred EEEEEEEECC--CCcccEEEEccCC---------CCCCEEEEEECC
Confidence 4678888874 4789999987642 224577766543
No 82
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=46.71 E-value=22 Score=24.28 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.4
Q ss_pred cccceeeeccCCCCCCceeEEEeeCc
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGT 134 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGt 134 (161)
..+|+|.|.|. + ..+|||.|+.|.
T Consensus 9 ~~~~~v~l~~~-~-~~~lGf~l~~~~ 32 (114)
T 1uew_A 9 LQTSDVVIHRK-E-NEGFGFVIISSL 32 (114)
T ss_dssp CCCEEEEEECC-T-TSCCCEEEECCC
T ss_pred ccceEEEEEEC-C-CCCCCEEEEeec
Confidence 35678999997 3 259999998764
No 83
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.87 E-value=15 Score=24.78 Aligned_cols=39 Identities=28% Similarity=0.175 Sum_probs=26.2
Q ss_pred ccceeeeccCCCCCCceeEEEee---CceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRD---GTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRd---GtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
..+.|.|.|. + ..|||-|+. |... + +..+|++|+...-|
T Consensus 9 ~~~~v~l~k~-~--~glG~~i~~~~~g~~~-----~-~~~~gv~V~~V~~~ 50 (107)
T 1wf8_A 9 ELFPVELEKD-E--DGLGISIIGMGVGADA-----G-LEKLGIFVKTVTEG 50 (107)
T ss_dssp EEEEEEEECB-T--TBSCEEEEEEEESCCT-----T-CCEEEEEEEEECTT
T ss_pred eEEEEEEEEC-C--CcccEEEEecCCCCCC-----C-CCCCCEEEEEeCCC
Confidence 3456788887 4 589999988 4331 1 34578999886544
No 84
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=44.16 E-value=20 Score=24.53 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=24.7
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
|+..+.|.|.|. + ..|||-++.|. +.-+|++|+...-
T Consensus 22 ~~~~~~v~l~~~-~--~glG~~l~~~~---------~~~~gv~V~~V~~ 58 (112)
T 2r4h_A 22 SMDFYTVELERG-A--KGFGFSLRGGR---------EYNMDLYVLRLAE 58 (112)
T ss_dssp -CCEEEEEEECB-T--TBTSEEEEECG---------GGTCCEEEEEECT
T ss_pred CCceEEEEEEcC-C--CccCEEEeccc---------cCCCCEEEEEECC
Confidence 456788899887 4 46999998764 2235677766543
No 85
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=43.92 E-value=7.7 Score=26.55 Aligned_cols=41 Identities=24% Similarity=0.168 Sum_probs=27.1
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
...|.|.|.|.++ ..|||-++.|.... +..+|++|+...-|
T Consensus 19 ~~~~~v~l~k~~~--~~lG~~i~~~~~~~------~~~~gv~V~~V~~~ 59 (117)
T 2o2t_A 19 RHVEVFELLKPPS--GGLGFSVVGLRSEN------RGELGIFVQEIQEG 59 (117)
T ss_dssp SCEEEEEEECCSS--SCSSCCEEEEECCC--------CEEEEECCCCTT
T ss_pred CeEEEEEEEECCC--CCCCEEEeecccCC------CCCCCEEEEEECCC
Confidence 3567788888744 78999998875421 23468888775433
No 86
>2kyy_A Possible ATP-dependent DNA helicase RECG-related; structural genomics, northeast structural genomics consortiu AAA_4 domain, PSI-2; NMR {Nitrosomonas europaea}
Probab=43.59 E-value=24 Score=26.07 Aligned_cols=58 Identities=10% Similarity=-0.067 Sum_probs=34.3
Q ss_pred cceeEEeecccceeeeeccCCCCCcchHHHHHHHHhhcc---CCCCCeEEEEe----cC---CCCceeccCccchHHHHh
Q psy16076 23 HKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHH---LDEIPFHLTYI----AT---DGDLLPINNDSNLGKALL 92 (161)
Q Consensus 23 ~~~veVKSKFdAEFRRFsl~r~~~~~feeF~~Ll~~lH~---L~~vdf~I~Yt----D~---~GDLLPINNDDNf~kAl~ 92 (161)
+..+|.|+... .-+++.+-+..+=+ -.+=-+.|+=. |. .|....+++.+.+.+.+.
T Consensus 17 ~~~lEfK~~~~--------------~~~~l~k~i~AFAN~~~~~GG~iiiGV~~~~~D~~~~~~~i~Gv~~~~~~~~~i~ 82 (153)
T 2kyy_A 17 SARIEAKRASD--------------MGKSVMETVIAFANEPGLDGGYLLLGVDWAINDKGDTVYRPVGLPDPDKVQRDLA 82 (153)
T ss_dssp CSSEEEECGGG--------------TTHHHHHHHHHHHTCTTCCCEEEEESEEEEECTTCCEEEEECCCSSHHHHHHHHH
T ss_pred CCcEEEeecCC--------------CHHHHHHHHhhhhCCCCCCCCEEEEEEcccccccCCCCceeEcCCCHHHHHHHHH
Confidence 45667776554 12344444444444 33345888888 74 277888887777666666
Q ss_pred hc
Q psy16076 93 NS 94 (161)
Q Consensus 93 sa 94 (161)
++
T Consensus 83 ~~ 84 (153)
T 2kyy_A 83 SQ 84 (153)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 87
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=42.04 E-value=27 Score=24.21 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=29.0
Q ss_pred eccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 105 DVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 105 DilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
..+|...+.|+|.|. + .+|||-+..|.. ....|++|+...-|
T Consensus 20 ~~~~~~~~~v~l~k~-~--~glG~~l~~~~~--------~~~~gv~V~~V~~~ 61 (124)
T 2daz_A 20 ADLPGELHIIELEKD-K--NGLGLSLAGNKD--------RSRMSIFVVGINPE 61 (124)
T ss_dssp TTSSSEEEEEEEECC-S--SCCCEEEECBSS--------TTSCCEEEEEECTT
T ss_pred ccCCCceEEEEEEeC-C--CccCEEEeccCC--------CCcCCEEEEEECCC
Confidence 346778889999988 3 689999986532 01357888776533
No 88
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=41.75 E-value=17 Score=24.27 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=16.7
Q ss_pred cceeeeccCCCCCCceeEEEeeC
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDG 133 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdG 133 (161)
.|.|.|.|.+| .++||.++.+
T Consensus 2 ~r~v~l~~~~~--~~~G~~l~~~ 22 (106)
T 3ngh_A 2 PRESKLSKQEG--QNYGFFLRIE 22 (106)
T ss_dssp CEEEEEECCTT--CCCCCEEECC
T ss_pred CEEEEEEeCCC--CeeCEEEEEE
Confidence 47788988865 7899999865
No 89
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.95 E-value=20 Score=23.86 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=17.4
Q ss_pred cccceeeeccCCCCCCceeEEEeeC
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDG 133 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdG 133 (161)
...|.|.|.|. . ..+||.++.+
T Consensus 5 ~~~r~v~l~k~-~--~g~G~~l~~~ 26 (102)
T 2d90_A 5 SSGRVVVIKKG-S--NGYGFYLRAG 26 (102)
T ss_dssp SSSEEEEEECC-S--SSSSCEEEEC
T ss_pred CCCEEEEEeeC-C--CCccEEEEee
Confidence 45688999997 3 4799999865
No 90
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=39.98 E-value=30 Score=23.01 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=18.2
Q ss_pred ccceeeeccCCCCCCceeEEEeeCc
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGT 134 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGt 134 (161)
..|.|+|.|.|+ ..|||.|+.|.
T Consensus 7 ~~~~v~l~k~~~--~glG~~i~~~~ 29 (107)
T 2h2b_A 7 EQHTVTLHRAPG--FGFGIAISGGR 29 (107)
T ss_dssp EEEEEEEECBTT--TBTCEEEEECT
T ss_pred eeEEEEEEeCCC--CccCEEEecCc
Confidence 357899999854 78999998764
No 91
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=39.71 E-value=18 Score=24.61 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=21.7
Q ss_pred CCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 120 PNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 120 pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
|+.+.++||-|.-|......+ .-.|++|++..-|
T Consensus 9 ~~~~~~~Gf~i~gG~~~~~~~----~~~gv~V~~V~~g 42 (106)
T 4amh_A 9 PRGSKGLGFSIAGGVGNQHWP----GDNSIYVTKIIEG 42 (106)
T ss_dssp ---CCCSCEEEEECTTSCSBT----TBCCEEEEEECTT
T ss_pred CCCCCccCEEEEeccCCcccc----CCCCEEEEEECCC
Confidence 577899999999886443322 2358898876644
No 92
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=39.71 E-value=20 Score=24.83 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=24.7
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.|.|.|.|.++ .+|||-++.|..- .-+|+||++..-|
T Consensus 16 ~~~v~l~k~~~--~~lG~~i~~~~~~--------~~~~~~V~~V~~~ 52 (117)
T 1v62_A 16 PLMVEIVKTPG--SALGISLTTTSLR--------NKSVITIDRIKPA 52 (117)
T ss_dssp SEEEEEECCTT--CCCCCEEEEECCS--------SSCEEEEEECCTT
T ss_pred cEEEEEEcCCC--CcccEEEEccCCC--------CCCCEEEEEECCC
Confidence 46688888754 7899999876421 1245888876543
No 93
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=38.43 E-value=43 Score=22.26 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=28.7
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+...+.|.|.+. +....|||.++.|..-.. ...-+|++|+...-|
T Consensus 10 ~~~~~~v~l~r~-~~~~~lG~~~~~~~~~~~----~~~~~gv~V~~V~~~ 54 (108)
T 2jre_A 10 GFSLYSVELFRE-KDTSSLGISISGMRDQST----TGEATGIYVKSLIPG 54 (108)
T ss_dssp SCEEEEEEEECC-STTSCCSEEEECCCCCSC----SSCCCCCEEEEECTT
T ss_pred CcEEEEEEEEec-CCCCCcCEEEEcccCCCC----CCCCCCEEEEEeCCC
Confidence 345667888765 667899999997753210 123457888776533
No 94
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.58 E-value=12 Score=24.97 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.0
Q ss_pred ccceeeeccCCCCCCceeEEEeeC
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDG 133 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdG 133 (161)
-+|.|+|.|. +.+|||.++.+
T Consensus 8 ~~r~v~l~k~---~~~~G~~l~~~ 28 (106)
T 2eei_A 8 QPRLCYLVKE---GGSYGFSLKTV 28 (106)
T ss_dssp SSEEEEEECC---SSSCSCCEECC
T ss_pred CCEEEEEEEC---CCCCCEEEEec
Confidence 3567899984 47999999755
No 95
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=37.07 E-value=19 Score=24.39 Aligned_cols=38 Identities=26% Similarity=0.156 Sum_probs=25.5
Q ss_pred cceeeeccCCCCCCceeEEEee---CceeEecCCccccccceEEEeeeec
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRD---GTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRd---GtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.+.|+|.|. + .+|||-++. |.... +..+|++|++..-|
T Consensus 5 ~~~v~l~k~-~--~glG~~l~~~~~~~~~~------~~~~g~~V~~V~~~ 45 (113)
T 2g5m_B 5 LFPVELEKD-S--EGLGISIIGMGAGADMG------LEKLGIFVKTVTEG 45 (113)
T ss_dssp EEEEECCCC-S--SCCCCEEEEEECCCCSS------SCCEEEEEEECCTT
T ss_pred EEEEEEEeC-C--CCCCEEEEecCCCCcCC------CCCCCEEEEEECCC
Confidence 356788886 3 689999987 33211 34578999886544
No 96
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=37.05 E-value=32 Score=23.16 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=22.5
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.|.|.|.|. + ..|||-|+.|.. .|++|+...-|
T Consensus 16 ~~~v~l~~~-~--~~lG~~l~~~~~-----------~g~~V~~V~~~ 48 (111)
T 2dlu_A 16 VEEVELIND-G--SGLGFGIVGGKT-----------SGVVVRTIVPG 48 (111)
T ss_dssp EEEEEEECC-S--SCCCEEEECCSS-----------SSBEEEEECTT
T ss_pred eEEEEEEeC-C--CccCEEEeccCC-----------CCEEEEEECCC
Confidence 467888886 4 679999986642 36777665433
No 97
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=36.64 E-value=37 Score=22.66 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=25.9
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCceeEecCCcc
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGL 143 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~Gl 143 (161)
.|....+.+..+.|.....+||.+..|.-.+|.++|-
T Consensus 7 ~~~~~~~~~~i~~~~~~~~lG~~~~~G~V~~V~~~sp 43 (90)
T 1y7n_A 7 ETMGNVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGI 43 (90)
T ss_dssp CCCSSCEEEEEEESSTTSCCCEEEETTEEEEECTTSH
T ss_pred CccCCcceEEEEeCCCccccCeEecCCEEEEECCCCH
Confidence 3556666676766688899999998884446666553
No 98
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=36.26 E-value=30 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=28.6
Q ss_pred ccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 106 VVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 106 ilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
+.|.....|.|.|. + ..|||.|..|.... .| +|++|+...-|
T Consensus 14 ~~~~~~~~v~~~~~-~--~~lG~~i~~g~~~~---~~----~g~~V~~V~~~ 55 (206)
T 3r0h_A 14 IKPNKKILIELKVE-K--KPMGVIVCGGKNNH---VT----TGCVITHVYPE 55 (206)
T ss_dssp CCTTSCEEEEEECT-T--SCCCEEEECCSSSS---CC----SCEEEEEECTT
T ss_pred CCCCCEEEEEEEeC-C--CCcCEEEecccCCC---CC----CCeEEEEECCC
Confidence 34556667788776 4 89999998775432 11 68888876544
No 99
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=35.45 E-value=7 Score=25.60 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=16.7
Q ss_pred cccceeeeccCCCCCCceeEEEeeC
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDG 133 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdG 133 (161)
.-+|.|.|.|.++ .|||.++.+
T Consensus 2 ~~pr~v~l~k~~~---~~G~~l~~~ 23 (91)
T 2vsp_A 2 MKPKLCRLAKGEN---GYGFHLNAI 23 (91)
T ss_dssp CCEEEEEEECBTT---BTSCCCBCC
T ss_pred CCcEEEEEEeCCC---cccEEEEec
Confidence 3568899999833 699998764
No 100
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=35.17 E-value=47 Score=29.98 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=59.2
Q ss_pred cceeEEeecccceeeeeccCCCCCc---chHHHHHHHHhhccCC-CCCeEEEEecCCCCceeccCc-cchHHHHhhcccc
Q psy16076 23 HKYNAFTLSFDAEFRRFSVPKPDIS---TYNEFKILVEKLHHLD-EIPFHLTYIATDGDLLPINND-SNLGKALLNSFLR 97 (161)
Q Consensus 23 ~~~veVKSKFdAEFRRFsl~r~~~~---~feeF~~Ll~~lH~L~-~vdf~I~YtD~~GDLLPINND-DNf~kAl~saFR~ 97 (161)
+..+|.|+..+.. -+..+...++. ..+++.+-+..+=+-. +=-+.|+-.|.+|...-+..| +.+.+++.+.-.+
T Consensus 37 ~~~lefK~~~~r~-~~~~~~~~~~~~~~~~~~~~k~i~AFAN~~gGG~iiiGV~d~~g~ivGv~~d~~~l~~~i~~~~~~ 115 (583)
T 3lmm_A 37 TQSVDFKEEAGRR-NGPQIEPGKPENPEAADKLADEVACMANTPGGGALIVGIEDKTGRIIGTELDIDWLRQGIFTRIDV 115 (583)
T ss_dssp GTTCEEECCSSCB-CSSSBCCCCSCCHHHHHHHHHHHHHHHHSTTCEEEEETBCTTTCBBCCCCCCHHHHHHHHHHHHSC
T ss_pred cccEEeecccccc-cccccccccccccccHHHHHHHHHHHhcCCCCcEEEEEecCCCCceecccCChHHHHHHHHhhcCC
Confidence 5667888754310 12345454443 3455555555544443 334777878878888888876 4466666654211
Q ss_pred cceEEEeeccccccceeeeccCCCCCCce-----eEEEeeCceeEe
Q psy16076 98 VSQIIDVDVVPETCRRVRLLKSPNSERPL-----GFYIRDGTSLRV 138 (161)
Q Consensus 98 VSaIiDVDilPeT~RRVrL~k~pgsdkpL-----GFYIRdGtSvRv 138 (161)
. .||.++...-++|=...-|.+++|. ++|+|.|.+=+.
T Consensus 116 ~---p~i~~~~~~gk~VlvI~Vp~~~~P~~~~~G~~YiR~G~~~~~ 158 (583)
T 3lmm_A 116 A---PDVVAKRVLGQRVLAIYVAAAAEPIEDTSDRLRWRVGDSCRP 158 (583)
T ss_dssp C---CEEEEEESSSCEEEEEEECCCSSCCCCTTSCCEEECSSSEEE
T ss_pred C---CceEEEEECCcEEEEEEECccccceEecCCcEEEecCCCCcc
Confidence 1 1222222223333333333333444 589999976543
No 101
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=34.94 E-value=43 Score=21.47 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.5
Q ss_pred cceeeeccCCCCCCceeEEEee
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRD 132 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRd 132 (161)
.+++.+-+.|+....|||.++.
T Consensus 4 ~~~~~~~~~~~~~~~lG~~~~~ 25 (90)
T 2eaq_A 4 DMRISINQTPGKSLDFGFTIKW 25 (90)
T ss_dssp EEEEEEECCTTCSSCCSEEEEE
T ss_pred ceEEEEEecCCCCCcccEEEEe
Confidence 4677888888877889998864
No 102
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=34.03 E-value=36 Score=31.07 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=39.4
Q ss_pred ccccceEEEeeccccccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeecC
Q psy16076 95 FLRVSQIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIND 158 (161)
Q Consensus 95 FR~VSaIiDVDilPeT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~~ 158 (161)
.++-|.-++-.......|.|.|.|. . ..|||-|+.|... +.+ ..-+|++|+...-|+
T Consensus 44 ~~~~s~~~~~~~~~~~~~~v~l~k~-~--~glGf~i~gg~~~---~~~-~~~~g~~V~~v~~gs 100 (721)
T 2xkx_A 44 TLEAPGYVNGTEGEMEYEEITLERG-N--SGLGFSIAGGTDN---PHI-GDDPSIFITKIIPGG 100 (721)
T ss_pred ccCcccccCCCCCCceEEEEEEEeC-C--CCCCEEEeCCcCC---ccc-CCCCCeEEEEeCCCC
Confidence 4555566665555667788999998 3 5999999987642 222 346789998876553
No 103
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=33.48 E-value=25 Score=25.48 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.1
Q ss_pred cccceeeeccCCCCCCceeEEEeeC
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDG 133 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdG 133 (161)
...+.|+|.|. ++.|||.|.|+
T Consensus 11 ~~~~~V~L~Kg---~~G~GFsI~~~ 32 (113)
T 3soe_A 11 GLLVTIPLIKG---PKGFGFAIADS 32 (113)
T ss_dssp CEEEEEEEECB---TTBSSEEEEEE
T ss_pred CCEEEEEEEEC---CCcccEEEeCC
Confidence 34578999996 35899999875
No 104
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.44 E-value=40 Score=22.26 Aligned_cols=36 Identities=36% Similarity=0.434 Sum_probs=24.6
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
+..|.|.|.|.+. ..|||-++.++. . -.|++|+...
T Consensus 9 ~~~~~v~l~~~~~--~~lG~~~~~~~~-----~----~~gv~V~~V~ 44 (100)
T 2eeh_A 9 DIIHSVRVEKSPA--GRLGFSVRGGSE-----H----GLGIFVSKVE 44 (100)
T ss_dssp CEECCEEECCCSS--SSCSEEEECCTT-----T----TCCEEEEEEC
T ss_pred CeEEEEEEEECCC--CCccEEEEcccc-----C----CCCEEEEEEC
Confidence 4568899998833 479999998743 1 1367776654
No 105
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=32.11 E-value=24 Score=23.47 Aligned_cols=40 Identities=28% Similarity=0.149 Sum_probs=24.4
Q ss_pred ceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 112 RRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 112 RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
..|.|.|. .+|||.|+.|...+-+|. .+...|++|+...-
T Consensus 13 ~~v~l~~~----~~lG~~i~gg~~~~~~p~-~~~~~gv~V~~V~~ 52 (103)
T 1n7t_A 13 IRVRVEKD----PELGFSISGGVGGRGNPF-RPDDDGIFVTRVQP 52 (103)
T ss_dssp EEEEEECS----SCCCBEEEECTTSSBCSS-CSSCCSEECCCBSS
T ss_pred EEEEEccC----CCccEEEEcccCCCCCcc-ccCCCCEEEEEECC
Confidence 34667776 379999998765332332 13456777776543
No 106
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=32.00 E-value=33 Score=22.47 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=18.2
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCc
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGT 134 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGt 134 (161)
+..+|.|.|.|. + ..|||.++.+.
T Consensus 6 ~~~~r~v~l~~~-~--~~~G~~l~~~~ 29 (93)
T 2dls_A 6 SGVQRCVIIQKD-Q--HGFGFTVSGDR 29 (93)
T ss_dssp CCCEEEEEEECS-S--SSCCEEEECSS
T ss_pred CCCCEEEEEEeC-C--CceeEEEeCCC
Confidence 446788999987 4 57999998643
No 107
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=31.72 E-value=50 Score=21.59 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=16.0
Q ss_pred ccceeeeccCCCCCCceeEEEeeCc
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGT 134 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGt 134 (161)
..+.|+|.|. + .+|||.++.+.
T Consensus 5 ~~~~v~l~~~-~--~~lG~~i~~~~ 26 (97)
T 1n7e_A 5 IIYTVELKRY-G--GPLGITISGTE 26 (97)
T ss_dssp CEEEEEEECT-T--SCCCEEEECCS
T ss_pred eEEEEEEEeC-C--CCcCEEEEccc
Confidence 3456888776 4 67999998763
No 108
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.47 E-value=25 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=18.7
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCc
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGT 134 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGt 134 (161)
|+..+++.+.+. +. .++||.++.|.
T Consensus 7 ~~~~~~~~v~~~-~~-~~~G~~~~gg~ 31 (100)
T 2edp_A 7 GGSFQYVPVQLQ-GG-APWGFTLKGGL 31 (100)
T ss_dssp CCCCEEEEEECC-SC-SCCCCCEEEEG
T ss_pred CCCcEEEEEEEC-CC-CCcCEEEeccC
Confidence 566777887777 44 68999998764
No 109
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=31.30 E-value=35 Score=25.73 Aligned_cols=37 Identities=30% Similarity=0.211 Sum_probs=24.5
Q ss_pred ceeeeccCCCCCCceeEEEee---CceeEecCCccccccceEEEeeeec
Q psy16076 112 RRVRLLKSPNSERPLGFYIRD---GTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 112 RRVrL~k~pgsdkpLGFYIRd---GtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
..|.|.|. + ..|||-|+. |.. .+ ....||||++.+-|
T Consensus 82 ~~v~l~k~-~--~glG~~i~g~~~g~~-----~~-~~~~gi~V~~V~~g 121 (170)
T 3egg_C 82 FPVELEKD-S--EGLGISIIGMGAGAD-----MG-LEKLGIFVKTVTEG 121 (170)
T ss_dssp EEEEEECB-T--TBSSEEEEEECSSSS-----CC-SSSBEEEEEEECTT
T ss_pred EEEEEEeC-C--CeEeEEEEecccCCc-----cc-cCCCCEEEEEECCC
Confidence 34677777 4 479999998 332 22 23468999987654
No 110
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.96 E-value=1.1e+02 Score=20.47 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCcchHHHHHHHHhhccCCCCCeEEEEecCC-C-CceeccCcc
Q psy16076 45 DISTYNEFKILVEKLHHLDEIPFHLTYIATD-G-DLLPINNDS 85 (161)
Q Consensus 45 ~~~~feeF~~Ll~~lH~L~~vdf~I~YtD~~-G-DLLPINNDD 85 (161)
.-.+-.++..+|+++-.++.-...+.|.|.. + -..++.+|+
T Consensus 31 ~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~ 73 (97)
T 1wjn_A 31 DSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDL 73 (97)
T ss_dssp TTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSS
T ss_pred CCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCc
Confidence 3478899999999999999989999999743 2 234455554
No 111
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=36.76 E-value=11 Score=26.43 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=23.8
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
..|.|.|.|.++ .+|||.++.|.. .-.|++|++..-
T Consensus 27 ~~~~v~l~k~~~--~glG~~l~~g~~---------~~~gv~V~~V~~ 62 (112)
T 2lob_A 27 GIRKVLLLKEDH--EGLGISITGGKE---------HGVPILISEIHP 62 (112)
Confidence 567788888733 699999987643 224566665543
No 112
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=29.35 E-value=40 Score=23.32 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=27.7
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
...+.|.|.|.+ ...|||-++.|..--. +....|++|+...-|
T Consensus 14 ~~~~~v~l~~~~--~~~lG~~i~~~~~~~~----~~~~~gv~V~~V~~~ 56 (129)
T 2dmz_A 14 FETYNVELVRKD--GQSLGIRIVGYVGTSH----TGEASGIYVKSVIPG 56 (129)
T ss_dssp EEEEEEEECCCT--TCCCCEEEEEECCCSS----SCCCCEEEEEEECTT
T ss_pred CcEEEEEEEeCC--CCCcCEEEEeecCCcc----cCCCCCEEEEEeCCC
Confidence 345678887762 4789999998653221 224468888876544
No 113
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=28.64 E-value=39 Score=22.54 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=23.4
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
..|.|.|.|. . ..|||.++.|. +...|++|++..-|
T Consensus 9 ~~~~v~l~~~-~--~g~G~~i~~g~---------~~~~~~~V~~V~~~ 44 (103)
T 1uep_A 9 KELDVHLRRM-E--SGFGFRILGGD---------EPGQPILIGAVIAM 44 (103)
T ss_dssp EEECCEEESS-S--SSCCEEECCCC---------STTSCCBEEEECTT
T ss_pred eEEEEEEEeC-C--CccCEEEeeec---------CCCCCeEEEEeCCC
Confidence 4566778875 3 57999998653 33456777765433
No 114
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=28.56 E-value=67 Score=21.97 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=21.8
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
..|.|+|.|.+ ..+||.++.+. ..+|++|+...
T Consensus 9 ~~r~v~l~~~~---~g~G~~l~~~~----------~~~gv~V~~V~ 41 (128)
T 2kjd_A 9 RPRLCTMKKGP---SGYGFNLHSDK----------SKPGQFIRSVD 41 (128)
T ss_dssp CCEEEEEECCS---SSCCEEEEECS----------SSCSEEEEEEC
T ss_pred CcEEEEEecCC---CcccEEEEecC----------CCCCEEEEEeC
Confidence 35668888873 46999998764 12366666654
No 115
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=28.49 E-value=27 Score=23.10 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=29.7
Q ss_pred ccceeeeccCC-CCCCceeEEEeeCceeEec--C-CccccccceEEEeeeec
Q psy16076 110 TCRRVRLLKSP-NSERPLGFYIRDGTSLRVT--S-TGLDKFLRISSSTKYIN 157 (161)
Q Consensus 110 T~RRVrL~k~p-gsdkpLGFYIRdGtSvRvt--~-~GlEKvPGiFISrlV~~ 157 (161)
..+++.+.|.. +....|||-++.|...... | .+++.-.|++|+...-|
T Consensus 4 ~~~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~ 55 (104)
T 3sfj_A 4 VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEG 55 (104)
T ss_dssp EEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTT
T ss_pred ceEEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCC
Confidence 34567777762 2223699999977664321 1 23466788999876543
No 116
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=27.39 E-value=84 Score=20.78 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=26.0
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
.|.|.|.|.++ .++||-|+..+.-. ..+-+.-.|++|++..-|
T Consensus 16 ~~~v~l~~~~~--~~~G~~l~~~~~~~--~~~~~~~~~~~V~~V~~~ 58 (104)
T 2z17_A 16 RKLVTVEKQDN--ETFGFEIQSYRPQN--QNACSSEMFTLICKIQED 58 (104)
T ss_dssp CCEEEEECCTT--SCCSEEEEECCCCC--CSSSCCSCCEEEEEECTT
T ss_pred ceEEEEEeCCC--CCccEEEEeeeccc--CCcccCCCCeEEEEECCC
Confidence 46677888743 58999998743210 122344568888876543
No 117
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=27.32 E-value=18 Score=21.06 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=16.0
Q ss_pred eeeeccCCCCCcchHHHHHHHHh
Q psy16076 36 FRRFSVPKPDISTYNEFKILVEK 58 (161)
Q Consensus 36 FRRFsl~r~~~~~feeF~~Ll~~ 58 (161)
|+.+..+..+..+|+||..++..
T Consensus 42 ~~~~D~~~~g~i~~~ef~~~~~~ 64 (66)
T 3li6_A 42 FKSIDADGNGEIDQNEFAKFYGS 64 (66)
T ss_dssp HHHHCTTCSSSCCHHHHHHHHTC
T ss_pred HHHHCCCCCCCCCHHHHHHHHHh
Confidence 55566666777788888877654
No 118
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=26.92 E-value=72 Score=21.42 Aligned_cols=35 Identities=23% Similarity=0.105 Sum_probs=23.6
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeee
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYI 156 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~ 156 (161)
.|.|.+.+. + ..+|||-++.|.. ..+|++|+...-
T Consensus 16 ~~~v~~~~~-~-~~~lG~~l~~~~~---------~~~gv~V~~V~~ 50 (114)
T 1x5n_A 16 EKKVFISLV-G-SRGLGCSISSGPI---------QKPGIFISHVKP 50 (114)
T ss_dssp SEEEEECCC-S-SCCCCEEEEECCS---------SSCSEEEEEECT
T ss_pred cEEEEEEEc-C-CCceeEEEeecCC---------CCCCEEEEEECC
Confidence 467888776 3 4689999998742 235677766543
No 119
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=26.74 E-value=39 Score=22.86 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.2
Q ss_pred eEEEEecCCCCceeccCcc
Q psy16076 67 FHLTYIATDGDLLPINNDS 85 (161)
Q Consensus 67 f~I~YtD~~GDLLPINNDD 85 (161)
=+++|+|.+|.-.=||.||
T Consensus 28 GmysY~D~~G~~~qIn~dd 46 (61)
T 2k57_A 28 GFYEFKQLDGKQTRINKDQ 46 (61)
T ss_dssp CEEEEEBTTSCEEEEETTT
T ss_pred CCEEEEcCCCCEEEEcHHH
Confidence 4699999999999999986
No 120
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=26.68 E-value=33 Score=23.28 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=17.0
Q ss_pred eEEEEecCCCCceeccCcc
Q psy16076 67 FHLTYIATDGDLLPINNDS 85 (161)
Q Consensus 67 f~I~YtD~~GDLLPINNDD 85 (161)
=+++|+|.+|.-.=||.||
T Consensus 28 Gm~sY~D~~G~~~qIn~dd 46 (61)
T 2rb6_A 28 GMYLYYDEDGREVMIKQED 46 (61)
T ss_dssp TEEEEECTTSCEEEEEGGG
T ss_pred CCEEEEcCCCCEEEEcHHH
Confidence 3589999999999999986
No 121
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=26.56 E-value=34 Score=23.20 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=17.0
Q ss_pred eEEEEecCCCCceeccCcc
Q psy16076 67 FHLTYIATDGDLLPINNDS 85 (161)
Q Consensus 67 f~I~YtD~~GDLLPINNDD 85 (161)
=+++|+|.+|.-.=||.||
T Consensus 28 Gm~sY~D~~G~~~qIn~dd 46 (61)
T 2jn0_A 28 GLVSYHDQQGNAMQINRDD 46 (61)
T ss_dssp TEEEEEBTTSCEEEEEGGG
T ss_pred CCEEEEcCCCCEEEEcHHH
Confidence 3589999999999999986
No 122
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=26.11 E-value=35 Score=23.56 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=19.6
Q ss_pred cccccceeeeccCCCCCCceeEEEeeCc
Q psy16076 107 VPETCRRVRLLKSPNSERPLGFYIRDGT 134 (161)
Q Consensus 107 lPeT~RRVrL~k~pgsdkpLGFYIRdGt 134 (161)
.++..|+|+|.|.. ...|||.++.+.
T Consensus 5 ~~~~~~~v~l~~~~--~~glG~~~~~~~ 30 (127)
T 1b8q_A 5 IEPNVISVRLFKRK--VGGLGFLVKERV 30 (127)
T ss_dssp CCCCSEEEEEECTT--TSCCSCCEEECT
T ss_pred cCCceEEEEEEeCC--CCcEeEEEEecC
Confidence 45678999998863 358999888654
No 123
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=26.07 E-value=46 Score=23.21 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=21.2
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeee
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKY 155 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV 155 (161)
.|-||+.|.+.+...+||-++.++ +.| ..|++|+...
T Consensus 7 ~~~v~i~k~~~~~~~~Gf~v~~~~-----~~~---~~g~~V~~V~ 43 (94)
T 3kzd_A 7 THSIHIEKSDTAADTYGFSLSSVE-----EDG---IRRLYVNSVK 43 (94)
T ss_dssp EEEEEEEC------CCSEEEEEEC-----SSS---SCEEEEEEEC
T ss_pred eeEEEEEeCCCCcCCcCEEEEecC-----CCC---cCCeEEEEEC
Confidence 467899999666788999888643 222 3567777654
No 124
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=26.04 E-value=32 Score=23.17 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEeeccccccceeeeccCCCCCCceeEEEeeCcee
Q psy16076 100 QIIDVDVVPETCRRVRLLKSPNSERPLGFYIRDGTSL 136 (161)
Q Consensus 100 aIiDVDilPeT~RRVrL~k~pgsdkpLGFYIRdGtSv 136 (161)
.-+|+|-.|+..++-..-..| .+=|| ++|.-+
T Consensus 55 ~~vd~d~~~~l~~~~~V~~~P----T~~~~-~~G~~v 86 (105)
T 3zzx_A 55 LKVDVDECEDIAQDNQIACMP----TFLFM-KNGQKL 86 (105)
T ss_dssp EEEETTTCHHHHHHTTCCBSS----EEEEE-ETTEEE
T ss_pred EEEecccCHHHHHHcCCCeec----EEEEE-ECCEEE
Confidence 457888788887776554443 34444 788765
No 125
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=25.43 E-value=46 Score=24.20 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=21.5
Q ss_pred ccceeeeccCCCCCCceeEEEeeCceeEecCCcccccc
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFL 147 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvP 147 (161)
..|.+++.|+-|+.-+.+.| .+++|+.|++=.|
T Consensus 214 ~~R~l~I~K~R~~~~~~~~~-----~f~It~~Gi~v~p 246 (251)
T 2zts_A 214 LKRYVLIRKMRETRHSMKKY-----PFEIGPNGIVVYP 246 (251)
T ss_dssp EEEEEEEEEETTCCCCCBEE-----EEEEETTEEEECC
T ss_pred EEEEEEEEEcCCCCCCCEEE-----EEEEeCCcEEEeC
Confidence 35668889987765444443 3677888877544
No 126
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=24.83 E-value=1.7e+02 Score=21.91 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=40.5
Q ss_pred eeccCCCCCcchHHHHHHHHhhccCCCC-CeEEEEecCCCCceeccCccchHHHHhh
Q psy16076 38 RFSVPKPDISTYNEFKILVEKLHHLDEI-PFHLTYIATDGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 38 RFsl~r~~~~~feeF~~Ll~~lH~L~~v-df~I~YtD~~GDLLPINNDDNf~kAl~s 93 (161)
=|+++.....+|+|....|.+. +++. --.+.|-|.+||-+....||.++ |..|
T Consensus 28 DwaV~~~~~L~FrDvL~~I~~v--mP~aT~TAFeYEDE~gDRITVRSDeE~k-AMls 81 (106)
T 2npt_A 28 DWTVHSGPQLLFRDVLDVIGQV--LPEATTTAFEYEDEDGDRITVRSDEEMK-AMLS 81 (106)
T ss_dssp EEEECC--CCCHHHHHHHHHHH--STTSCCSEEEEECTTSCEEEECSHHHHH-HHHH
T ss_pred ccccCCcccccHHHHHHHHHHh--CccceeeeeeeccccCCeeEEcchHHHH-HHHH
Confidence 4677777788999999888775 3444 34579999999999999999998 5544
No 127
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=24.55 E-value=29 Score=20.72 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=18.5
Q ss_pred eeeeccCCCCCcchHHHHHHHHhhc
Q psy16076 36 FRRFSVPKPDISTYNEFKILVEKLH 60 (161)
Q Consensus 36 FRRFsl~r~~~~~feeF~~Ll~~lH 60 (161)
|+.+..+..+...|+||..++.++.
T Consensus 53 ~~~~D~~~dg~i~~~eF~~~~~~~~ 77 (78)
T 1cb1_A 53 FQELDKNGDGEVSFEEFQVLVKKIS 77 (78)
T ss_dssp HHHTCCCSSSSEEHHHHHHHHHHHC
T ss_pred HHHhcCCCCCCCcHHHHHHHHHHhc
Confidence 4555566677789999999887653
No 128
>2bhm_A Type IV secretion system protein VIRB8; bacterial protein, bacterial type IV secretion; 2.4A {Brucella melitensis biovar suis} SCOP: d.17.4.26
Probab=24.42 E-value=24 Score=26.09 Aligned_cols=15 Identities=47% Similarity=0.835 Sum_probs=10.8
Q ss_pred CceeEEEeeCceeEecCC
Q psy16076 124 RPLGFYIRDGTSLRVTST 141 (161)
Q Consensus 124 kpLGFYIRdGtSvRvt~~ 141 (161)
-||||||. +.|+++.
T Consensus 145 NPlGf~Vt---~y~~d~e 159 (164)
T 2bhm_A 145 NPLGFNVT---SYRVDPE 159 (164)
T ss_dssp CTTCEEEE---EEEEEEC
T ss_pred CCCceEEE---EEeeCch
Confidence 59999994 5666553
No 129
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.37 E-value=17 Score=25.43 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=15.4
Q ss_pred cccceeeeccCCCCCCceeEEEe
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIR 131 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIR 131 (161)
..+|.|.|.|. . +.|||-++
T Consensus 7 ~~~r~v~l~r~-~--~g~Gf~l~ 26 (126)
T 2yuy_A 7 GGPKTVTLKRT-S--QGFGFTLR 26 (126)
T ss_dssp SSCCCEEEECC-S--SSCSCCBC
T ss_pred CCCEEEEEEEC-C--CCcceeec
Confidence 45788999997 3 46999984
No 130
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=23.66 E-value=95 Score=21.97 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=28.6
Q ss_pred cccceeeeccCCCCCCceeEEEeeCceeE----ecCCccccccceEEEeeeec
Q psy16076 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLR----VTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 109 eT~RRVrL~k~pgsdkpLGFYIRdGtSvR----vt~~GlEKvPGiFISrlV~~ 157 (161)
.-.|.|.|.|. + ...|||-|+.|..-. ..+. -.--+|++|++..-|
T Consensus 26 ~~~r~v~l~r~-~-~~g~Gf~i~g~~~~~~~~~~~~~-~~~~~gv~V~~V~~g 75 (132)
T 3l4f_D 26 IKEKTVLLQKK-D-SEGFGFVLRGAKAQTPIEEFTPT-PAFPALQYLESVDEG 75 (132)
T ss_dssp CCCCEEEEECC-T-TSCCCEEEEEECCSSCCSCCCCC-TTSCCSEEEEEECTT
T ss_pred CCCEEEEEEEC-C-CCcEeEEEeccCCCCcccccccc-ccCCCCEEEEEECCC
Confidence 45688999997 3 368999999885411 0111 111238888887654
No 131
>4akz_A Type IV secretion system protein VIRB8; transport protein; 2.25A {Brucella suis} PDB: 4aky_A
Probab=23.44 E-value=30 Score=24.88 Aligned_cols=14 Identities=50% Similarity=0.897 Sum_probs=10.1
Q ss_pred CceeEEEeeCceeEecC
Q psy16076 124 RPLGFYIRDGTSLRVTS 140 (161)
Q Consensus 124 kpLGFYIRdGtSvRvt~ 140 (161)
-||||++- |.|+.+
T Consensus 124 NPlGF~Vt---sYr~d~ 137 (138)
T 4akz_A 124 NPLGFNVT---SYRVDP 137 (138)
T ss_dssp CTTCEEEE---EEEEEE
T ss_pred CCCceEEE---EEecCC
Confidence 49999984 566654
No 132
>2cc3_A Protein VIRB8; secretion system, type IV secretion system, consurf; 2.2A {Agrobacterium tumefaciens} SCOP: d.17.4.26
Probab=23.06 E-value=26 Score=25.82 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=12.2
Q ss_pred CceeEEEeeCceeEecCCcc
Q psy16076 124 RPLGFYIRDGTSLRVTSTGL 143 (161)
Q Consensus 124 kpLGFYIRdGtSvRvt~~Gl 143 (161)
-||||||. +.|+++.-+
T Consensus 126 NPlGf~Vt---~Y~~d~e~~ 142 (150)
T 2cc3_A 126 NPGGLVVT---SYQTSEDTV 142 (150)
T ss_dssp CTTCEEEE---EEEEEECCC
T ss_pred CCCceEEE---EEECCHHHh
Confidence 59999994 677766543
No 133
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone, nucleoprotein, RNA replication; 2.10A {Mokola virus}
Probab=22.84 E-value=18 Score=31.47 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=0.0
Q ss_pred eEEEeeccccccceeeeccCCC
Q psy16076 100 QIIDVDVVPETCRRVRLLKSPN 121 (161)
Q Consensus 100 aIiDVDilPeT~RRVrL~k~pg 121 (161)
-=|+||-|||-+||.||--..+
T Consensus 42 EPieVDsLPEDM~RL~i~d~~~ 63 (303)
T 2wzl_A 42 EPLYVDSLPEDMSRLRIEDKSR 63 (303)
T ss_dssp ----------------------
T ss_pred CCcccccchhhHhhccccCCCC
Confidence 3478999999999999876643
No 134
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.71 E-value=18 Score=24.23 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=18.8
Q ss_pred ccccceeeeccCCCCCCceeEEEeeCc
Q psy16076 108 PETCRRVRLLKSPNSERPLGFYIRDGT 134 (161)
Q Consensus 108 PeT~RRVrL~k~pgsdkpLGFYIRdGt 134 (161)
+...|.|.|.|. + .+|||-++.+.
T Consensus 13 ~~~~~~v~l~k~-~--~glG~~l~~~~ 36 (113)
T 1um7_A 13 AREPRKIILHKG-S--TGLGFNIVGGE 36 (113)
T ss_dssp CCSEEEEEEECC-S--SCSSBCCBCCS
T ss_pred CCceEEEEEEEC-C--CcccEEEEecc
Confidence 456788999987 4 68999998764
No 135
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=22.54 E-value=28 Score=20.68 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=17.9
Q ss_pred eeeeccCCCCCcchHHHHHHHHhh
Q psy16076 36 FRRFSVPKPDISTYNEFKILVEKL 59 (161)
Q Consensus 36 FRRFsl~r~~~~~feeF~~Ll~~l 59 (161)
|+.+..+..+...|+||..++.++
T Consensus 51 ~~~~D~~~~g~i~~~eF~~~~~~~ 74 (76)
T 1qx2_A 51 IEEVDKNGDGEVSFEEFLVMMKKI 74 (76)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHH
T ss_pred HHHhCCCCCCcEeHHHHHHHHHHh
Confidence 445556667778999999988765
No 136
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=22.53 E-value=61 Score=21.51 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=23.5
Q ss_pred cceeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeec
Q psy16076 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIN 157 (161)
Q Consensus 111 ~RRVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~ 157 (161)
...|.| |. + ..|||-|+.|.... +.-+|++|+...-|
T Consensus 12 ~~~v~l-~~-~--~glG~~i~~~~~~~------~~~~gv~V~~V~~~ 48 (106)
T 3axa_A 12 IITVTL-KK-Q--NGMGLSIVAAKGAG------QDKLGIYVKSVVKG 48 (106)
T ss_dssp EEEEEE-EC-S--SSCSEEEEEEECSS------CSSEEEEEEEEBTT
T ss_pred EEEEEE-CC-C--CccCEEEEeecCCC------CCCCCEEEEEECCC
Confidence 345667 54 3 67999998664311 34578888876543
No 137
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=22.19 E-value=36 Score=21.57 Aligned_cols=19 Identities=5% Similarity=0.219 Sum_probs=17.4
Q ss_pred CCCceeccCccchHHHHhh
Q psy16076 75 DGDLLPINNDSNLGKALLN 93 (161)
Q Consensus 75 ~GDLLPINNDDNf~kAl~s 93 (161)
+|.+.+|+++++|.+++..
T Consensus 3 ~~~v~~i~~~~~~~~~~~~ 21 (113)
T 1ti3_A 3 EGQVIACHTVDTWKEHFEK 21 (113)
T ss_dssp CCCEEEECSHHHHHHHHHH
T ss_pred CCceeEeccHHHHHHHHHH
Confidence 6889999999999999987
No 138
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=21.23 E-value=49 Score=22.51 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=21.7
Q ss_pred EEEEecCCCCceeccCccchHHHHhhcccccceEEEeec
Q psy16076 68 HLTYIATDGDLLPINNDSNLGKALLNSFLRVSQIIDVDV 106 (161)
Q Consensus 68 ~I~YtD~~GDLLPINNDDNf~kAl~saFR~VSaIiDVDi 106 (161)
+++|+|.+|.-.-||.|+ |+.|+.+|+
T Consensus 29 m~sY~D~~G~~~qIn~dd------------Vk~i~e~~~ 55 (62)
T 2rd1_A 29 MTSYTDQEGNQREINSND------------VAQLIKADL 55 (62)
T ss_dssp EEEEECTTSCEEEEEGGG------------EEEEEECCS
T ss_pred CEEEEcCCCCEEEEcHHH------------hhhHhhhhh
Confidence 589999999999999885 456666654
No 139
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=20.95 E-value=75 Score=21.22 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=18.6
Q ss_pred ccceeeeccCCCCCCceeEEEeeCce
Q psy16076 110 TCRRVRLLKSPNSERPLGFYIRDGTS 135 (161)
Q Consensus 110 T~RRVrL~k~pgsdkpLGFYIRdGtS 135 (161)
..|.|.|.|. + ...+||.|+.|..
T Consensus 7 ~~~~v~l~~~-~-~~g~G~~l~~~~~ 30 (109)
T 1q3o_A 7 KEKTVLLQKK-D-SEGFGFVLRGAKA 30 (109)
T ss_dssp EEEEEEEECC-T-TSCCSEEEEESSC
T ss_pred CcEEEEEEEC-C-CCCCcEEEEeccC
Confidence 4578899886 3 4699999998764
No 140
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=20.94 E-value=26 Score=20.20 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=16.8
Q ss_pred eeeeeccCCCCCcchHHHHHHHHh
Q psy16076 35 EFRRFSVPKPDISTYNEFKILVEK 58 (161)
Q Consensus 35 EFRRFsl~r~~~~~feeF~~Ll~~ 58 (161)
=|+.+..+..+...|+||..++.+
T Consensus 42 ~~~~~D~~~dg~i~~~ef~~~~~~ 65 (67)
T 1tiz_A 42 FFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp HHHHHCCSSSSEECHHHHHHHHHT
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHH
Confidence 355566666777788888887764
No 141
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=20.91 E-value=38 Score=23.03 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=16.4
Q ss_pred EEEEecCCCCceeccCcc
Q psy16076 68 HLTYIATDGDLLPINNDS 85 (161)
Q Consensus 68 ~I~YtD~~GDLLPINNDD 85 (161)
+++|+|.+|.-.=||.||
T Consensus 29 mysY~D~~G~~~qIn~dd 46 (62)
T 3bdu_A 29 MISYTDAYGQQQQINRDN 46 (62)
T ss_dssp SEEEEBTTSCEEEECGGG
T ss_pred CEEEEcCCCCEEEEcHHH
Confidence 589999999999999886
No 142
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=20.26 E-value=65 Score=22.56 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=25.1
Q ss_pred eeeeccCCCCCCceeEEEeeCceeEecCCccccccceEEEeeeecC
Q psy16076 113 RVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISSSTKYIND 158 (161)
Q Consensus 113 RVrL~k~pgsdkpLGFYIRdGtSvRvt~~GlEKvPGiFISrlV~~~ 158 (161)
.|.|.|. ....|||-|+.|..- ......||||++..-|+
T Consensus 28 ~v~l~k~--~~~glG~~i~~~~~~-----~~~~~~gi~V~~V~~gs 66 (127)
T 1wg6_A 28 EIPLNDS--GSAGLGVSLKGNKSR-----ETGTDLGIFIKSIIHGG 66 (127)
T ss_dssp EEECSSS--TTTCCCCEEEEEEET-----TTTEEEEEEEEECCSSS
T ss_pred EEEEeeC--CCCccCeEEecccCC-----CCCCCCCEEEEEECCCC
Confidence 3556544 347899999887543 22334689998876553
Done!