RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16076
(161 letters)
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha,
PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 90.5 bits (225), Expect = 3e-25
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 32 FDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKAL 91
FDAEFRRF++P+ +S + EF L+ +H + + L Y GDLLP+ ND +L +AL
Sbjct: 9 FDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRAL 68
Query: 92 L--NSFLRV 98
LR+
Sbjct: 69 ASGPPPLRL 77
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity
protein par6 (Par-6B) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 98
Score = 42.6 bits (100), Expect = 9e-07
Identities = 28/41 (68%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Query: 109 ETCRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRI 149
ET RRVRLLK S++PLGFYIRDGTS+RVT++GL+K I
Sbjct: 1 ETHRRVRLLKH-GSDKPLGFYIRDGTSVRVTASGLEKQPGI 40
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1
(KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 35.2 bits (81), Expect = 4e-04
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 31 SFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYIATDGDLLPINNDSNLGKA 90
+F E + F V P+ +T+ + + +V+ L+ + Y+ + + + IN+ +A
Sbjct: 10 TFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT--IQIKYLDEENEEVSINSQGEYEEA 67
Query: 91 L 91
L
Sbjct: 68 L 68
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 85
Score = 30.1 bits (68), Expect = 0.027
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 30 LSFDAEFRRFSVPKPDISTYNEFKILVEKLHH-LDEIPFHLTYIATDGDLLPINNDSNLG 88
+ + + D + +K L K+ +D F L DG I DS +
Sbjct: 17 FYYKDDIFALMLK-GDTT----YKELRSKIAPRIDTDNFKLQTKLFDGSGEEIKTDSQVS 71
Query: 89 KAL 91
+
Sbjct: 72 NII 74
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor
protein-binding family A member 1 (APBA1, X11) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 27.1 bits (60), Expect = 0.36
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 113 RVRLLKSPNSERPLGFYIRDGTSLRVTSTG 142
L++ P+ LGF +++G + G
Sbjct: 2 TTVLIRRPDLRYQLGFSVQNGIICSLMRGG 31
>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 26.9 bits (59), Expect = 0.61
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 111 CRRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISS 151
V + + N GF I + + + + +I
Sbjct: 11 TSDVVIHRKEN--EGFGFVIISSLNRPESGSTITVPHKIGR 49
>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae
[TaxId: 573]}
Length = 563
Score = 27.9 bits (60), Expect = 0.74
Identities = 3/51 (5%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 22 YHKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHHLDEIPFHLTYI 72
Y+ + ++ + EF+ +++ + + + +
Sbjct: 154 NWGYD--PFHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVV 202
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
amyloderamosa [TaxId: 32043]}
Length = 475
Score = 27.3 bits (59), Expect = 0.99
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 22 YHKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLHH------LDEIPFHLTYIATD 75
Y Y T ++ + RR++ K EF+ +V+ H+ +D + H T
Sbjct: 85 YWGYM--TENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTW 142
Query: 76 GDLLPINND 84
P
Sbjct: 143 TSSDPTTAT 151
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 25.8 bits (57), Expect = 2.5
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 9 ISHYSYPQGITTVYHKYNAFTLSFD 33
YH+ + + F+
Sbjct: 384 TDDLPRADWTAVYYHRASKTGIGFN 408
>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 24.1 bits (52), Expect = 4.6
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 112 RRVRLLKSPNSERPLGFYIRDGTSLRVTSTGLDKFLRISS 151
L +S R LGF I G G D + +S
Sbjct: 9 HVACLARSE---RGLGFSIAGGKGSTPYRAG-DAGIFVSR 44
>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp.,
ksm-k38 [TaxId: 1409]}
Length = 390
Score = 24.3 bits (51), Expect = 9.0
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 18/70 (25%)
Query: 17 GITTVY------------HKYNAFTLSFDAEFRRFSVPKPDISTYNEFKILVEKLH---- 60
GIT ++ Y A+ L EF + + T + + + L
Sbjct: 36 GITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDI 95
Query: 61 --HLDEIPFH 68
+ D + H
Sbjct: 96 NVYGDVVMNH 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.401
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 616,334
Number of extensions: 28313
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 21
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)