BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16078
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YY0|A Chain A, Crystal Structure Of Ms0802, C-Myc-1 Binding Protein
Domain From Homo Sapiens
pdb|2YY0|B Chain B, Crystal Structure Of Ms0802, C-Myc-1 Binding Protein
Domain From Homo Sapiens
pdb|2YY0|C Chain C, Crystal Structure Of Ms0802, C-Myc-1 Binding Protein
Domain From Homo Sapiens
pdb|2YY0|D Chain D, Crystal Structure Of Ms0802, C-Myc-1 Binding Protein
Domain From Homo Sapiens
Length = 53
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96
LDF++ +LG PE E E + +L E K + + + LK +L++YE
Sbjct: 4 LDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 53
>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 1092
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 19 YLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAV-LQDL--DEAK 75
Y+E+ +D+ L ++YS ED + I +N D R ++ + + L DL EA
Sbjct: 794 YVEKCKYMDSKMKPLWLVYSSRAFGEDSVGVIFKNGDDLRQDMLTLQMLRLMDLLWKEAG 853
Query: 76 AELDQLTATVANLKERLSKYEVVESDQPISD 106
+L L +R EVV + + I+D
Sbjct: 854 LDLRMLPYGCLATGDRSGLIEVVSTSETIAD 884
>pdb|3RKL|A Chain A, The Crystal Structure Of A81 From Sulfolobus Turreted
Icosahedral Virus
pdb|3RKL|B Chain B, The Crystal Structure Of A81 From Sulfolobus Turreted
Icosahedral Virus
pdb|3RKL|C Chain C, The Crystal Structure Of A81 From Sulfolobus Turreted
Icosahedral Virus
pdb|3RKL|D Chain D, The Crystal Structure Of A81 From Sulfolobus Turreted
Icosahedral Virus
Length = 87
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96
I N+ D E E VL +L E L ++ +A L E+LS+YE
Sbjct: 4 ITINIKDNTIEYGHKEFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYE 50
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 6 ETPNEKNKEAFRRYLEQSGVVDAI 29
ET +E+N E R YLE +GV ++
Sbjct: 341 ETGDERNTEKVRDYLESNGVFGSV 364
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 6 ETPNEKNKEAFRRYLEQSGVVDAI 29
ET +E+N E R YLE +GV ++
Sbjct: 321 ETGDERNTEKVRDYLESNGVFGSV 344
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 6 ETPNEKNKEAFRRYLEQSGVVDAI 29
ET +E+N E R YLE +GV ++
Sbjct: 321 ETGDERNTEKVRDYLESNGVFGSV 344
>pdb|3IXV|A Chain A, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|C Chain C, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|D Chain D, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|E Chain E, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|F Chain F, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|G Chain G, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|H Chain H, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|I Chain I, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|J Chain J, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|K Chain K, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|L Chain L, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|M Chain M, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXW|A Chain A, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|C Chain C, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|D Chain D, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|E Chain E, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|F Chain F, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|G Chain G, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|H Chain H, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|I Chain I, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|J Chain J, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|K Chain K, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|L Chain L, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|M Chain M, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
Length = 626
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 3 FIP-ETPNEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLG 55
F+P ET N NKEA +QS VV+A + ++ PE L + R ++G
Sbjct: 118 FVPAETINRANKEASNHPDQQSIVVEAEETGNIL------DPEYKLSYFREDIG 165
>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To
Interferon- Stimulated Gene 15 (Isg15)
Length = 156
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 16/63 (25%)
Query: 39 IEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98
+ +K ++PL+ + RN + + YE +LT TVA+LK+++S E V
Sbjct: 74 VVDKSDEPLNILVRN---NKGRSSTYEV-------------RLTQTVAHLKQQVSGLEGV 117
Query: 99 ESD 101
+ D
Sbjct: 118 QDD 120
>pdb|3B02|A Chain A, Crystal Structure Of Tthb099, A Transcriptional Regulator
Crp Family From Thermus Thermophilus Hb8
Length = 195
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 27 DAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86
+A+T A+V + L + RNL + V YEA LQ
Sbjct: 66 EAMTEAVVQGLEPRAMDHEALHRVARNLARQMRRVQAYEAHLQ---------------TG 110
Query: 87 NLKERLSKYEVVESDQPIS 105
L+ R+++Y + +D P+S
Sbjct: 111 ELRARIARYLLFLADTPLS 129
>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral
Factor
Length = 159
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 39 IEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98
+ +K ++PL + RN + + YE +LT TVA+LK+++S E V
Sbjct: 74 VVDKSDEPLSILVRN---NKGRSSTYEV-------------RLTQTVAHLKQQVSGLEGV 117
Query: 99 ESD 101
+ D
Sbjct: 118 QDD 120
>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced
Ubiquitin Cross Reactive Protein
Length = 155
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 39 IEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98
+ +K ++PL + RN + + YE +LT TVA+LK+++S E V
Sbjct: 74 VVDKSDEPLSILVRN---NKGRSSTYEV-------------RLTQTVAHLKQQVSGLEGV 117
Query: 99 ESD 101
+ D
Sbjct: 118 QDD 120
>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza Virus B, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
pdb|3R66|D Chain D, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza Virus B, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
Length = 164
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 39 IEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98
+ +K ++PL + RN + + YE +LT TVA+LK+++S E V
Sbjct: 81 VVDKXDEPLSILVRN---NKGRSSTYEV-------------RLTQTVAHLKQQVSGLEGV 124
Query: 99 ESD 101
+ D
Sbjct: 125 QDD 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.129 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,045,191
Number of Sequences: 62578
Number of extensions: 105828
Number of successful extensions: 383
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 51
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)