BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16078
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBP7|MYCBP_BOVIN C-Myc-binding protein OS=Bos taurus GN=MYCBP PE=3 SV=3
Length = 103
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDL 71
+E FRRYLE+SGV+D +T LV LY EKP LDF++ +LG PE E E + +L
Sbjct: 10 KREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLEL 69
Query: 72 DEAKAELDQLTATVANLKERLSKYE 96
E K + + + LK +L++YE
Sbjct: 70 AEMKEKYEAIVEENKKLKTKLAQYE 94
>sp|Q99417|MYCBP_HUMAN C-Myc-binding protein OS=Homo sapiens GN=MYCBP PE=1 SV=3
Length = 103
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDL 71
+E FRRYLE+SGV+D +T LV LY EKP LDF++ +LG PE E E + +L
Sbjct: 10 KREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLEL 69
Query: 72 DEAKAELDQLTATVANLKERLSKYE 96
E K + + + LK +L++YE
Sbjct: 70 AEMKEKYEAIVEENKKLKAKLAQYE 94
>sp|Q5R7A8|MYCBP_PONAB C-Myc-binding protein OS=Pongo abelii GN=MYCBP PE=3 SV=3
Length = 103
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDL 71
+E FRRYLE+SGV+D +T LV LY EKP LDF++ +LG PE E E + +L
Sbjct: 10 KREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLEL 69
Query: 72 DEAKAELDQLTATVANLKERLSKYE 96
E K + + + LK +L++YE
Sbjct: 70 AEIKEKYEAIVEENKKLKAKLAQYE 94
>sp|Q9EQS3|MYCBP_MOUSE C-Myc-binding protein OS=Mus musculus GN=Mycbp PE=2 SV=4
Length = 103
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%)
Query: 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDL 71
+E FRRYLE+SGV+D +T LV LY EKP LDF++ +LG PE E E V +L
Sbjct: 10 KREQFRRYLEKSGVLDTLTKVLVALYEEPEKPTSALDFLKHHLGAATPENPEIELVRLEL 69
Query: 72 DEAKAELDQLTATVANLKERLSKYE 96
E K + + LK +L +YE
Sbjct: 70 AEMKEKYEATVEENKKLKAKLVQYE 94
>sp|Q54I57|MYCBP_DICDI C-Myc-binding protein homolog OS=Dictyostelium discoideum
GN=mycbp PE=3 SV=1
Length = 90
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 9 NEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVL 68
N KE F+ YLE+SGV+DA+T LV LY +KP D L+FI+++LG+ + +A+
Sbjct: 3 NSAEKEEFKGYLEKSGVIDALTKVLVGLYEESDKPSDALEFIKKHLGNSLG--IDVDALK 60
Query: 69 QDLDEAKAELDQLTATVANLKERL 92
Q+ + KAE+ LT V +L ++L
Sbjct: 61 QENADLKAEVSALTQRVDDLSKKL 84
>sp|Q9VG76|MYCBP_DROME C-Myc-binding protein homolog OS=Drosophila melanogaster GN=CG17202
PE=2 SV=2
Length = 181
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 62/105 (59%), Gaps = 10/105 (9%)
Query: 1 MSFIPETPNEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPE 60
MSF P P ++ RRYLE+ V+D++T + + I+E+PE+P+D+IR ++G R +
Sbjct: 1 MSFKPIDPK---RDEIRRYLERGSVLDSLTKLFIRV--IKERPENPMDYIRNHIGVVRHQ 55
Query: 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQPIS 105
+YE + QDL A E+ +L A + + +V++ QP++
Sbjct: 56 HDKYERLQQDLQLANEEIQRLRAIINGINP-----DVLQGHQPVA 95
>sp|Q607P2|TYPH_METCA Putative thymidine phosphorylase OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=MCA1717 PE=3
SV=1
Length = 516
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDL 71
+++AF+R+ E +G + + A +P +D +RR +G ER + +Y+A+ D+
Sbjct: 76 SEQAFQRFGEPAGQLVNVAQA---------EPPLSMDGVRRKIGGERLDYGDYQAITSDI 126
Query: 72 DEAK-AELDQLTATVANLKERLSKYEVV 98
+ + ++++ VA + L + EV+
Sbjct: 127 AKGRYSKMEMAAFLVATGQNGLDRDEVL 154
>sp|Q3J7D7|GRPE_NITOC Protein GrpE OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=grpE PE=3 SV=1
Length = 210
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 41 EKPEDPLDFIRRNLGDER-----PEVAEYEAVLQDLDEAKAELDQ 80
E+PEDP++ R G E+ PE AE EAV Q L++A+++ D+
Sbjct: 16 ERPEDPVESQTRAEGGEQIQEAAPETAELEAVQQLLEDARSKADE 60
>sp|Q06277|IBPA_HAES2 Adenosine monophosphate-protein transferase and cysteine protease
IbpA OS=Haemophilus somnus (strain 2336) GN=ibpA PE=1
SV=2
Length = 4095
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 4 IPETPNEKNKEAFRRYLEQSG-VVDAITSALVMLYSIEEKP---------EDPL-DFIRR 52
+P PNE FR L Q + D + + +YS+ KP ++PL +RR
Sbjct: 2615 LPPLPNE-----FRTRLSQGADLADHVYDTIGSIYSVLSKPKASSNLEMVDNPLYGSVRR 2669
Query: 53 NLGDERPEVAEYEAVLQDLDEAKAEL 78
GD+ PE+ + +L ++E E+
Sbjct: 2670 AAGDQLPELPTVKTLLNKVEEVGNEI 2695
>sp|A7INN1|SYS_XANP2 Serine--tRNA ligase OS=Xanthobacter autotrophicus (strain ATCC
BAA-1158 / Py2) GN=serS PE=3 SV=1
Length = 468
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 51 RRNLGDERPEVAEYEAVLQDLDEAKAELD-----QLTATVANLKERLSKYEVVESDQPIS 105
RR L D ++A A +++ +AKA+ D +L A VANLK + E + D S
Sbjct: 47 RRTLTDLEGKLARRNAASKEIGQAKAQKDEERASRLMAEVANLKADIPTLEALAKDWEKS 106
Query: 106 DDNS 109
DN+
Sbjct: 107 LDNA 110
>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana
GN=RPP13L4 PE=2 SV=2
Length = 852
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 25 VVDAITSALV--MLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLT 82
+VDA+ + + L +EEK D+ R+ L D + E+ ++ L+D + K + L
Sbjct: 1 MVDAVVTVFLEKTLNILEEKGRTVSDY-RKQLEDLQSELKYMQSFLKDAERQKRTNETLR 59
Query: 83 ATVANLKERLSKYEVVESDQPISD 106
VA+L+E + + E + D ++D
Sbjct: 60 TLVADLRELVYEAEDILVDCQLAD 83
>sp|Q7T0P4|POC1A_XENLA POC1 centriolar protein homolog A OS=Xenopus laevis GN=poc1a PE=1
SV=2
Length = 441
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 46 PLDFIRRNLGDERPEVAE--YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96
PL + R++ P+ + + V L+ +LD LT TV L++RLS E
Sbjct: 363 PLSYTSRSVDQHHPQAEDGNLQTVASTLEHIVGQLDILTRTVGILEQRLSLTE 415
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.129 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,146,216
Number of Sequences: 539616
Number of extensions: 1410981
Number of successful extensions: 6261
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 6146
Number of HSP's gapped (non-prelim): 228
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)