Query psy16078
Match_columns 111
No_of_seqs 105 out of 129
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 20:19:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05186 Dpy-30: Dpy-30 motif; 97.8 1.8E-05 3.9E-10 47.7 2.7 36 16-54 2-37 (42)
2 PF02183 HALZ: Homeobox associ 95.3 0.05 1.1E-06 33.2 4.6 34 62-95 5-38 (45)
3 PRK14127 cell division protein 94.8 0.14 3E-06 36.7 6.3 38 62-99 37-74 (109)
4 PF02183 HALZ: Homeobox associ 94.6 0.12 2.6E-06 31.5 4.9 32 62-93 12-43 (45)
5 TIGR02894 DNA_bind_RsfA transc 94.6 0.073 1.6E-06 40.6 4.7 53 44-97 83-139 (161)
6 TIGR01834 PHA_synth_III_E poly 93.3 0.23 4.9E-06 41.4 5.7 46 44-91 273-318 (320)
7 PRK00888 ftsB cell division pr 93.3 0.3 6.4E-06 34.3 5.5 40 59-98 24-63 (105)
8 PF04977 DivIC: Septum formati 93.1 0.29 6.3E-06 31.1 4.9 37 59-95 14-50 (80)
9 PF01166 TSC22: TSC-22/dip/bun 93.0 0.082 1.8E-06 34.3 2.1 41 50-92 4-44 (59)
10 PHA01750 hypothetical protein 92.5 0.4 8.7E-06 32.1 5.0 34 61-94 41-74 (75)
11 PF07989 Microtub_assoc: Micro 92.3 0.4 8.7E-06 31.9 4.9 48 47-96 23-70 (75)
12 smart00338 BRLZ basic region l 92.2 0.5 1.1E-05 29.8 5.1 33 61-93 32-64 (65)
13 PF06005 DUF904: Protein of un 91.5 0.59 1.3E-05 31.0 5.0 35 62-96 18-52 (72)
14 PF06156 DUF972: Protein of un 91.5 0.65 1.4E-05 32.9 5.5 48 47-97 10-57 (107)
15 KOG4797|consensus 90.6 0.55 1.2E-05 34.2 4.4 49 40-90 47-95 (123)
16 PRK13169 DNA replication intia 90.3 0.92 2E-05 32.4 5.4 48 47-97 10-57 (110)
17 PF03980 Nnf1: Nnf1 ; InterPr 90.2 2 4.4E-05 29.5 6.9 77 11-89 18-107 (109)
18 PF07106 TBPIP: Tat binding pr 89.4 0.66 1.4E-05 34.1 4.2 41 59-99 69-109 (169)
19 PF04380 BMFP: Membrane fusoge 89.4 1.7 3.8E-05 28.9 5.8 66 24-91 6-79 (79)
20 PF00170 bZIP_1: bZIP transcri 89.2 1.5 3.3E-05 27.5 5.2 29 63-91 34-62 (64)
21 KOG4109|consensus 89.0 0.46 1E-05 34.5 3.0 39 15-56 65-103 (116)
22 PRK00888 ftsB cell division pr 88.2 1.1 2.5E-05 31.3 4.5 30 61-90 33-62 (105)
23 KOG0994|consensus 87.6 1.9 4.2E-05 42.1 6.9 70 17-93 1187-1256(1758)
24 PF09789 DUF2353: Uncharacteri 87.5 1.4 3E-05 36.8 5.3 48 51-98 178-225 (319)
25 PF06005 DUF904: Protein of un 87.3 1.9 4.2E-05 28.5 5.0 29 62-90 25-53 (72)
26 PRK14127 cell division protein 86.2 1.7 3.6E-05 31.1 4.5 37 64-100 32-68 (109)
27 PF04977 DivIC: Septum formati 85.9 2.1 4.6E-05 27.0 4.5 28 61-88 23-50 (80)
28 COG2433 Uncharacterized conser 85.9 3.7 8E-05 37.3 7.4 36 61-96 428-463 (652)
29 PRK09413 IS2 repressor TnpA; R 85.7 9.8 0.00021 26.5 8.7 81 6-92 12-101 (121)
30 smart00340 HALZ homeobox assoc 85.4 3.2 7E-05 25.4 4.8 31 60-90 3-33 (44)
31 PF11853 DUF3373: Protein of u 84.9 0.79 1.7E-05 40.3 2.7 37 60-97 23-59 (489)
32 PF09712 PHA_synth_III_E: Poly 84.9 1.4 3E-05 35.9 4.0 38 44-83 256-293 (293)
33 TIGR02209 ftsL_broad cell divi 84.8 2.6 5.5E-05 27.3 4.6 32 64-95 26-57 (85)
34 PF08317 Spc7: Spc7 kinetochor 84.4 3.7 8E-05 33.4 6.3 38 59-96 206-243 (325)
35 PF07334 IFP_35_N: Interferon- 84.2 2.7 5.7E-05 28.5 4.5 28 64-91 2-29 (76)
36 PRK13922 rod shape-determining 83.7 3 6.5E-05 32.7 5.4 32 62-93 76-110 (276)
37 PF05597 Phasin: Poly(hydroxya 83.6 2.1 4.6E-05 31.3 4.2 35 47-83 96-130 (132)
38 PF14775 NYD-SP28_assoc: Sperm 83.6 3.9 8.5E-05 26.1 4.9 34 62-95 26-59 (60)
39 PRK15396 murein lipoprotein; P 82.6 4.1 9E-05 27.5 5.0 36 59-94 22-57 (78)
40 PF07798 DUF1640: Protein of u 82.5 15 0.00033 27.4 8.5 24 15-38 6-33 (177)
41 TIGR01837 PHA_granule_1 poly(h 82.2 3.2 7E-05 29.5 4.6 31 50-82 86-116 (118)
42 PF14193 DUF4315: Domain of un 82.1 2.4 5.2E-05 28.9 3.7 34 64-97 3-36 (83)
43 PF07716 bZIP_2: Basic region 81.9 5.9 0.00013 24.1 5.1 26 64-89 27-52 (54)
44 PF07407 Seadorna_VP6: Seadorn 81.8 1.2 2.6E-05 38.0 2.6 35 60-94 30-64 (420)
45 COG4026 Uncharacterized protei 81.6 6.6 0.00014 32.1 6.6 20 10-30 106-125 (290)
46 PF07407 Seadorna_VP6: Seadorn 81.5 3.1 6.6E-05 35.6 4.8 27 70-96 33-59 (420)
47 PF00170 bZIP_1: bZIP transcri 81.1 5.7 0.00012 24.8 5.0 35 62-96 26-60 (64)
48 TIGR02449 conserved hypothetic 80.9 2.8 6.2E-05 27.5 3.6 14 67-80 19-32 (65)
49 KOG3119|consensus 80.3 6.6 0.00014 31.5 6.3 39 61-99 221-259 (269)
50 KOG1333|consensus 80.3 2.6 5.7E-05 33.8 3.9 75 13-96 140-217 (241)
51 PF11544 Spc42p: Spindle pole 80.2 5.3 0.00012 27.1 4.8 34 63-96 6-39 (76)
52 TIGR00219 mreC rod shape-deter 80.2 4.9 0.00011 32.4 5.5 32 62-93 66-108 (283)
53 PRK10884 SH3 domain-containing 79.8 4.1 8.9E-05 31.7 4.8 31 64-94 134-164 (206)
54 PHA00728 hypothetical protein 79.3 2.8 6.1E-05 31.3 3.5 26 61-86 4-29 (151)
55 smart00338 BRLZ basic region l 79.1 5.8 0.00013 24.8 4.5 34 62-95 26-59 (65)
56 KOG3366|consensus 79.0 21 0.00046 27.6 8.3 79 5-89 47-125 (172)
57 PRK15422 septal ring assembly 78.4 6 0.00013 27.0 4.7 26 62-87 18-43 (79)
58 PRK13922 rod shape-determining 78.4 2.5 5.5E-05 33.1 3.3 28 61-88 68-95 (276)
59 PF04102 SlyX: SlyX; InterPro 78.2 7.5 0.00016 25.1 4.9 36 62-97 18-53 (69)
60 PF05377 FlaC_arch: Flagella a 77.4 5.9 0.00013 25.3 4.1 24 63-86 15-38 (55)
61 PF09006 Surfac_D-trimer: Lung 77.1 4.5 9.9E-05 25.0 3.4 25 72-96 2-26 (46)
62 COG1753 Predicted antotoxin, c 77.1 7.5 0.00016 26.3 4.7 59 13-76 10-68 (74)
63 PF04728 LPP: Lipoprotein leuc 77.0 11 0.00023 24.2 5.3 32 62-93 3-34 (56)
64 PRK09973 putative outer membra 76.9 7.8 0.00017 26.7 4.9 35 59-93 21-55 (85)
65 PF10805 DUF2730: Protein of u 76.8 7.9 0.00017 26.9 5.1 35 59-93 62-96 (106)
66 cd04781 HTH_MerR-like_sg6 Heli 76.6 22 0.00048 24.6 7.4 47 47-93 59-105 (120)
67 TIGR02209 ftsL_broad cell divi 76.6 5.1 0.00011 25.9 3.9 30 60-89 29-58 (85)
68 cd04787 HTH_HMRTR_unk Helix-Tu 76.5 17 0.00037 25.7 6.9 36 64-99 81-116 (133)
69 PRK04406 hypothetical protein; 76.1 13 0.00028 24.7 5.7 37 62-98 25-61 (75)
70 PF07716 bZIP_2: Basic region 76.0 7.5 0.00016 23.7 4.3 31 66-96 22-52 (54)
71 PF13870 DUF4201: Domain of un 75.6 15 0.00033 27.1 6.6 72 23-94 104-177 (177)
72 PF13600 DUF4140: N-terminal d 75.6 9.4 0.0002 25.6 5.1 36 60-95 68-103 (104)
73 TIGR02894 DNA_bind_RsfA transc 75.4 5.2 0.00011 30.5 4.1 51 47-97 82-132 (161)
74 KOG3856|consensus 75.3 7.2 0.00016 29.0 4.7 38 61-98 9-46 (135)
75 COG2960 Uncharacterized protei 74.9 15 0.00032 26.3 6.0 39 60-98 57-95 (103)
76 PF05529 Bap31: B-cell recepto 74.7 7.7 0.00017 29.0 4.9 29 61-89 160-188 (192)
77 COG1422 Predicted membrane pro 73.9 8.8 0.00019 30.3 5.1 36 47-86 61-96 (201)
78 PHA02557 22 prohead core prote 73.6 9.4 0.0002 31.4 5.4 46 49-96 128-175 (271)
79 PF05103 DivIVA: DivIVA protei 73.5 2 4.4E-05 29.6 1.4 34 64-97 27-60 (131)
80 PF08657 DASH_Spc34: DASH comp 73.1 34 0.00074 27.6 8.5 38 61-98 179-216 (259)
81 PRK14872 rod shape-determining 72.9 9.5 0.00021 32.1 5.4 29 59-87 54-82 (337)
82 KOG4196|consensus 72.7 6.6 0.00014 29.3 4.0 32 65-96 77-108 (135)
83 PF10883 DUF2681: Protein of u 72.7 8.9 0.00019 26.5 4.4 36 62-97 23-58 (87)
84 cd04779 HTH_MerR-like_sg4 Heli 72.6 6 0.00013 28.7 3.7 36 63-98 75-110 (134)
85 cd04776 HTH_GnyR Helix-Turn-He 72.1 11 0.00023 26.5 4.8 32 64-95 82-113 (118)
86 PRK02793 phi X174 lysis protei 72.1 19 0.00041 23.6 5.7 37 62-98 22-58 (72)
87 PRK00846 hypothetical protein; 71.8 17 0.00037 24.5 5.5 38 62-99 27-64 (77)
88 PRK05771 V-type ATP synthase s 71.5 15 0.00032 32.5 6.6 38 61-98 92-129 (646)
89 smart00394 RIIa RIIalpha, Regu 71.2 7.7 0.00017 22.1 3.3 15 40-54 16-30 (38)
90 PF15456 Uds1: Up-regulated Du 71.1 13 0.00027 27.0 5.1 33 59-92 19-51 (124)
91 PF05377 FlaC_arch: Flagella a 71.0 14 0.00031 23.5 4.7 31 63-93 8-38 (55)
92 KOG3156|consensus 71.0 7.9 0.00017 31.0 4.3 68 15-86 49-140 (220)
93 KOG2577|consensus 70.9 6.8 0.00015 33.3 4.1 70 29-100 111-182 (354)
94 PF04340 DUF484: Protein of un 70.4 11 0.00024 28.8 5.0 27 63-89 41-67 (225)
95 PF02403 Seryl_tRNA_N: Seryl-t 69.4 7.2 0.00016 26.4 3.4 84 12-95 10-100 (108)
96 PF15058 Speriolin_N: Sperioli 69.1 9.7 0.00021 30.1 4.4 31 61-92 11-41 (200)
97 cd01109 HTH_YyaN Helix-Turn-He 68.8 33 0.00072 23.4 6.7 34 62-95 79-112 (113)
98 PRK00736 hypothetical protein; 68.6 25 0.00054 22.8 5.6 37 62-98 19-55 (68)
99 PF12709 Kinetocho_Slk19: Cent 68.4 16 0.00034 25.4 4.8 59 26-88 17-75 (87)
100 PRK15422 septal ring assembly 67.9 15 0.00033 25.0 4.7 19 62-80 25-43 (79)
101 PRK14156 heat shock protein Gr 67.8 15 0.00033 28.1 5.2 36 59-94 31-66 (177)
102 PF11083 Streptin-Immun: Lanti 67.7 31 0.00067 24.5 6.3 72 22-95 14-85 (99)
103 PRK02119 hypothetical protein; 67.5 27 0.00058 22.9 5.7 37 62-98 23-59 (73)
104 COG3074 Uncharacterized protei 67.4 7.7 0.00017 26.3 3.1 6 65-70 28-33 (79)
105 KOG1962|consensus 67.3 10 0.00022 30.2 4.2 32 62-93 179-210 (216)
106 PF15466 DUF4635: Domain of un 67.3 16 0.00034 27.1 4.9 48 37-86 75-122 (135)
107 TIGR03752 conj_TIGR03752 integ 67.1 5.2 0.00011 35.1 2.8 7 52-58 48-54 (472)
108 COG2919 Septum formation initi 66.8 12 0.00025 26.5 4.1 39 60-98 48-86 (117)
109 PF07195 FliD_C: Flagellar hoo 66.8 24 0.00051 27.3 6.2 46 48-93 178-224 (239)
110 PHA03155 hypothetical protein; 66.4 9.5 0.00021 27.7 3.6 27 59-85 5-31 (115)
111 PRK11239 hypothetical protein; 66.2 13 0.00028 29.7 4.6 30 63-92 184-213 (215)
112 PF12709 Kinetocho_Slk19: Cent 66.2 17 0.00037 25.1 4.7 26 69-94 49-74 (87)
113 COG2919 Septum formation initi 66.1 16 0.00035 25.7 4.7 33 59-91 54-86 (117)
114 TIGR02449 conserved hypothetic 66.0 25 0.00053 23.0 5.2 32 64-95 30-61 (65)
115 PRK03947 prefoldin subunit alp 65.6 14 0.0003 26.2 4.3 43 44-89 93-135 (140)
116 KOG0709|consensus 65.5 3.2 6.9E-05 36.5 1.2 35 64-98 281-315 (472)
117 PF02197 RIIa: Regulatory subu 65.5 8.1 0.00018 22.4 2.6 25 25-54 6-30 (38)
118 TIGR01834 PHA_synth_III_E poly 65.3 9.6 0.00021 31.9 3.9 30 68-97 288-317 (320)
119 PF04899 MbeD_MobD: MbeD/MobD 65.3 17 0.00038 24.0 4.4 29 67-95 40-68 (70)
120 TIGR00414 serS seryl-tRNA synt 65.2 13 0.00028 31.5 4.8 84 12-95 10-102 (418)
121 TIGR00219 mreC rod shape-deter 65.2 6.6 0.00014 31.7 2.9 32 63-94 60-91 (283)
122 PF01166 TSC22: TSC-22/dip/bun 65.2 5.7 0.00012 25.8 2.0 34 66-99 11-47 (59)
123 PRK10884 SH3 domain-containing 65.2 19 0.00041 28.0 5.4 12 81-92 137-148 (206)
124 PF06305 DUF1049: Protein of u 64.8 8.8 0.00019 23.7 2.9 27 62-88 41-67 (68)
125 PF06810 Phage_GP20: Phage min 64.8 12 0.00027 27.7 4.1 21 63-83 28-48 (155)
126 PRK04325 hypothetical protein; 64.6 33 0.00071 22.5 5.7 37 62-98 23-59 (74)
127 PF07303 Occludin_ELL: Occludi 64.5 23 0.00049 24.7 5.1 71 14-95 19-99 (101)
128 PF07106 TBPIP: Tat binding pr 64.4 14 0.0003 27.1 4.2 25 73-97 113-137 (169)
129 PRK10803 tol-pal system protei 64.1 14 0.0003 29.5 4.5 29 62-90 61-89 (263)
130 PF05103 DivIVA: DivIVA protei 64.0 2.8 6.1E-05 28.9 0.5 30 62-91 32-61 (131)
131 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.9 17 0.00037 25.9 4.5 30 64-93 100-129 (132)
132 KOG4571|consensus 63.8 13 0.00029 30.8 4.5 31 62-92 255-285 (294)
133 COG1842 PspA Phage shock prote 63.5 27 0.00059 27.6 6.0 71 24-97 2-73 (225)
134 PF06810 Phage_GP20: Phage min 63.5 16 0.00034 27.2 4.4 24 63-86 42-68 (155)
135 PRK14147 heat shock protein Gr 63.5 20 0.00043 27.2 5.1 34 61-94 24-57 (172)
136 PRK10265 chaperone-modulator p 63.4 9.6 0.00021 26.2 3.1 25 72-96 74-98 (101)
137 COG3883 Uncharacterized protei 63.3 16 0.00034 29.9 4.7 31 63-93 53-83 (265)
138 PRK14159 heat shock protein Gr 63.3 21 0.00045 27.3 5.1 36 59-94 27-62 (176)
139 PF07061 Swi5: Swi5; InterPro 63.2 18 0.00039 24.4 4.3 29 64-92 2-30 (83)
140 cd01106 HTH_TipAL-Mta Helix-Tu 63.1 39 0.00085 22.6 6.0 41 48-90 61-101 (103)
141 PF14197 Cep57_CLD_2: Centroso 62.9 16 0.00034 23.9 3.9 20 68-87 46-65 (69)
142 PF04111 APG6: Autophagy prote 62.5 17 0.00037 29.7 4.9 33 63-95 51-83 (314)
143 PF02185 HR1: Hr1 repeat; Int 62.3 33 0.00072 21.7 5.3 33 64-96 35-67 (70)
144 PRK11546 zraP zinc resistance 62.3 28 0.00062 26.0 5.6 34 50-83 77-110 (143)
145 PF07334 IFP_35_N: Interferon- 62.3 13 0.00029 25.1 3.5 28 71-98 2-29 (76)
146 PRK14161 heat shock protein Gr 62.0 22 0.00047 27.2 5.1 34 61-94 25-58 (178)
147 PF01466 Skp1: Skp1 family, di 62.0 24 0.00051 22.9 4.6 49 18-71 24-73 (78)
148 cd00632 Prefoldin_beta Prefold 61.9 26 0.00056 23.8 5.0 29 65-93 73-101 (105)
149 TIGR00050 rRNA_methyl_1 RNA me 61.9 23 0.0005 27.6 5.3 53 25-77 178-231 (233)
150 PF12958 DUF3847: Protein of u 61.8 20 0.00044 24.6 4.4 33 64-96 3-35 (86)
151 PF02344 Myc-LZ: Myc leucine z 61.7 29 0.00062 20.0 4.6 24 66-89 5-28 (32)
152 PF01920 Prefoldin_2: Prefoldi 61.7 32 0.0007 22.5 5.3 34 62-95 62-95 (106)
153 PRK14155 heat shock protein Gr 61.6 22 0.00047 27.9 5.1 34 61-94 19-52 (208)
154 PRK00295 hypothetical protein; 61.2 38 0.00083 21.9 5.5 35 62-96 19-53 (68)
155 PF11853 DUF3373: Protein of u 61.0 6.7 0.00015 34.6 2.4 26 67-93 23-48 (489)
156 COG3937 Uncharacterized conser 60.5 13 0.00028 26.7 3.4 22 72-93 86-107 (108)
157 PF09006 Surfac_D-trimer: Lung 60.5 32 0.00069 21.3 4.7 27 64-90 1-27 (46)
158 PRK14153 heat shock protein Gr 60.4 23 0.00049 27.6 5.0 34 61-94 39-72 (194)
159 COG3883 Uncharacterized protei 60.4 16 0.00035 29.8 4.3 29 64-92 68-96 (265)
160 PF06694 Plant_NMP1: Plant nuc 60.0 45 0.00098 28.1 6.9 71 22-100 133-205 (325)
161 COG1792 MreC Cell shape-determ 59.8 13 0.00028 30.1 3.7 38 61-98 72-112 (284)
162 COG4467 Regulator of replicati 59.8 24 0.00053 25.6 4.7 34 61-94 21-54 (114)
163 PRK14149 heat shock protein Gr 59.7 25 0.00055 27.3 5.1 36 59-94 40-75 (191)
164 PF06345 Drf_DAD: DRF Autoregu 59.5 8.2 0.00018 18.6 1.5 11 24-34 1-11 (15)
165 PF04508 Pox_A_type_inc: Viral 59.0 17 0.00036 19.4 2.8 17 70-86 2-18 (23)
166 PF06156 DUF972: Protein of un 58.7 28 0.0006 24.6 4.8 30 61-90 28-57 (107)
167 PRK14157 heat shock protein Gr 58.3 24 0.00053 28.2 4.9 33 62-94 84-116 (227)
168 PF11382 DUF3186: Protein of u 58.0 17 0.00037 29.6 4.1 35 61-95 38-72 (308)
169 PRK14141 heat shock protein Gr 58.0 26 0.00056 27.6 4.9 34 61-94 37-70 (209)
170 PF14244 UBN2_3: gag-polypepti 57.8 66 0.0014 22.8 7.9 82 14-97 50-142 (152)
171 PF02330 MAM33: Mitochondrial 57.7 12 0.00026 28.3 3.0 25 13-37 161-185 (204)
172 PF06008 Laminin_I: Laminin Do 57.7 47 0.001 26.0 6.4 31 67-97 85-115 (264)
173 PRK14154 heat shock protein Gr 57.6 28 0.0006 27.4 5.1 33 62-94 59-91 (208)
174 COG3074 Uncharacterized protei 57.6 27 0.00059 23.7 4.3 15 67-81 23-37 (79)
175 PF13870 DUF4201: Domain of un 57.6 44 0.00095 24.6 6.0 40 52-92 33-72 (177)
176 PF05529 Bap31: B-cell recepto 57.5 21 0.00046 26.6 4.3 35 62-96 154-188 (192)
177 cd04786 HTH_MerR-like_sg7 Heli 57.4 59 0.0013 23.2 6.4 38 63-100 79-116 (131)
178 cd09235 V_Alix Middle V-domain 57.4 61 0.0013 26.5 7.3 28 12-39 132-159 (339)
179 PF06295 DUF1043: Protein of u 57.4 43 0.00092 23.9 5.7 39 47-87 12-50 (128)
180 PRK14143 heat shock protein Gr 57.3 26 0.00056 28.0 4.9 32 63-94 75-106 (238)
181 KOG3335|consensus 57.1 43 0.00093 26.1 5.9 35 62-96 106-140 (181)
182 PF11382 DUF3186: Protein of u 57.1 19 0.00041 29.3 4.3 43 54-96 24-66 (308)
183 PF06698 DUF1192: Protein of u 56.9 20 0.00043 23.1 3.5 27 62-88 21-47 (59)
184 PF06632 XRCC4: DNA double-str 56.8 22 0.00048 29.8 4.6 35 62-96 137-171 (342)
185 PF12329 TMF_DNA_bd: TATA elem 56.7 28 0.00061 22.8 4.3 30 63-92 34-63 (74)
186 PLN02678 seryl-tRNA synthetase 56.7 16 0.00035 31.6 3.9 84 12-95 14-104 (448)
187 TIGR03752 conj_TIGR03752 integ 56.7 24 0.00053 31.1 5.0 38 46-83 57-94 (472)
188 PRK14151 heat shock protein Gr 56.6 31 0.00067 26.3 5.1 33 62-94 27-59 (176)
189 KOG3335|consensus 56.5 29 0.00063 27.0 4.9 33 64-96 101-133 (181)
190 PF04325 DUF465: Protein of un 56.4 41 0.00089 20.1 4.7 26 58-83 23-48 (49)
191 PF08317 Spc7: Spc7 kinetochor 56.4 25 0.00053 28.7 4.8 45 47-94 211-255 (325)
192 PRK09039 hypothetical protein; 56.2 20 0.00044 29.6 4.3 21 63-83 138-158 (343)
193 PF08826 DMPK_coil: DMPK coile 56.2 43 0.00092 21.6 5.0 29 66-94 29-57 (61)
194 PF13815 Dzip-like_N: Iguana/D 56.2 35 0.00075 23.9 5.0 34 62-95 80-113 (118)
195 PF14257 DUF4349: Domain of un 56.1 49 0.0011 25.8 6.3 43 50-93 151-193 (262)
196 PF07047 OPA3: Optic atrophy 3 56.0 34 0.00073 24.6 5.0 26 64-89 107-132 (134)
197 PF04999 FtsL: Cell division p 55.9 30 0.00064 23.0 4.4 28 62-89 42-69 (97)
198 PF09197 Rap1-DNA-bind: Rap1, 55.9 18 0.00039 25.7 3.5 39 4-43 59-97 (105)
199 PHA01750 hypothetical protein 55.8 28 0.00061 23.3 4.2 31 65-95 38-68 (75)
200 TIGR00293 prefoldin, archaeal 55.5 21 0.00044 24.7 3.7 34 62-95 6-39 (126)
201 COG5509 Uncharacterized small 55.3 22 0.00047 23.4 3.5 24 71-94 27-50 (65)
202 PF05164 ZapA: Cell division p 55.0 43 0.00093 21.4 5.0 31 61-92 58-88 (89)
203 KOG4196|consensus 55.0 34 0.00074 25.5 4.9 34 65-98 84-117 (135)
204 PRK14163 heat shock protein Gr 55.0 32 0.0007 27.2 5.1 33 62-94 47-79 (214)
205 cd04766 HTH_HspR Helix-Turn-He 54.9 52 0.0011 21.6 5.4 20 74-93 70-89 (91)
206 PRK03947 prefoldin subunit alp 54.9 34 0.00074 24.2 4.8 29 64-92 15-43 (140)
207 PRK09039 hypothetical protein; 54.6 25 0.00053 29.1 4.6 33 63-95 124-156 (343)
208 PF04999 FtsL: Cell division p 54.5 26 0.00056 23.3 3.9 37 62-98 35-71 (97)
209 PHA00728 hypothetical protein 54.4 20 0.00042 26.8 3.5 26 69-94 5-30 (151)
210 PF04111 APG6: Autophagy prote 54.4 25 0.00055 28.8 4.6 34 62-95 57-90 (314)
211 PF11932 DUF3450: Protein of u 54.3 28 0.00061 27.1 4.7 22 65-86 45-66 (251)
212 TIGR01837 PHA_granule_1 poly(h 54.3 19 0.00041 25.5 3.4 20 76-95 96-115 (118)
213 PF05812 Herpes_BLRF2: Herpesv 54.3 28 0.00061 25.3 4.3 24 63-86 4-27 (118)
214 TIGR02680 conserved hypothetic 54.2 1E+02 0.0022 30.1 9.2 68 26-95 179-256 (1353)
215 PRK14139 heat shock protein Gr 54.1 35 0.00077 26.3 5.1 32 62-93 39-70 (185)
216 PRK14162 heat shock protein Gr 54.1 35 0.00076 26.5 5.1 31 63-93 47-77 (194)
217 PF11932 DUF3450: Protein of u 53.9 30 0.00066 26.9 4.8 13 64-76 58-70 (251)
218 PRK14148 heat shock protein Gr 53.9 33 0.00072 26.6 4.9 30 64-93 49-78 (195)
219 PRK10803 tol-pal system protei 53.8 21 0.00046 28.3 4.0 30 66-95 58-87 (263)
220 KOG2483|consensus 53.7 30 0.00066 27.7 4.8 37 62-98 105-141 (232)
221 PF15290 Syntaphilin: Golgi-lo 53.6 28 0.00061 29.1 4.7 9 42-50 52-60 (305)
222 PF14645 Chibby: Chibby family 53.3 40 0.00086 24.1 4.9 29 61-89 70-98 (116)
223 cd00584 Prefoldin_alpha Prefol 53.0 24 0.00051 24.5 3.7 28 64-91 8-35 (129)
224 PF08671 SinI: Anti-repressor 53.0 11 0.00024 21.2 1.6 12 12-23 18-29 (30)
225 PF11336 DUF3138: Protein of u 52.7 23 0.0005 31.4 4.2 27 60-86 23-49 (514)
226 COG3879 Uncharacterized protei 52.7 48 0.001 26.9 5.8 34 62-96 51-84 (247)
227 PF13863 DUF4200: Domain of un 52.6 29 0.00063 23.8 4.1 36 63-98 75-110 (126)
228 KOG2483|consensus 52.2 17 0.00038 29.0 3.2 39 44-82 101-139 (232)
229 PF03670 UPF0184: Uncharacteri 52.2 43 0.00094 23.0 4.7 36 61-96 25-60 (83)
230 PF02403 Seryl_tRNA_N: Seryl-t 52.1 64 0.0014 21.7 5.6 38 60-97 27-64 (108)
231 PRK14162 heat shock protein Gr 52.0 37 0.00081 26.3 4.9 38 59-96 36-73 (194)
232 cd07429 Cby_like Chibby, a nuc 51.6 30 0.00064 24.8 4.0 34 59-92 69-102 (108)
233 TIGR03185 DNA_S_dndD DNA sulfu 51.5 48 0.001 29.3 6.1 43 49-92 409-451 (650)
234 PF09789 DUF2353: Uncharacteri 51.4 31 0.00068 28.9 4.7 39 61-99 78-116 (319)
235 TIGR02977 phageshock_pspA phag 51.4 55 0.0012 25.1 5.8 71 24-97 2-73 (219)
236 PF13815 Dzip-like_N: Iguana/D 51.3 48 0.001 23.2 5.0 32 61-92 86-117 (118)
237 cd00890 Prefoldin Prefoldin is 51.3 51 0.0011 22.4 5.1 31 64-94 89-119 (129)
238 KOG4343|consensus 51.2 31 0.00066 31.4 4.8 39 62-100 302-340 (655)
239 PF03980 Nnf1: Nnf1 ; InterPr 51.1 41 0.00089 22.9 4.6 32 64-95 75-106 (109)
240 cd00890 Prefoldin Prefoldin is 51.1 27 0.00059 23.7 3.7 27 63-89 7-33 (129)
241 PF08172 CASP_C: CASP C termin 51.0 40 0.00086 27.0 5.1 34 65-98 2-35 (248)
242 PRK13979 DNA topoisomerase IV 50.9 78 0.0017 30.1 7.6 73 12-84 375-468 (957)
243 PRK14164 heat shock protein Gr 50.9 39 0.00085 26.7 5.0 35 60-94 75-109 (218)
244 cd04766 HTH_HspR Helix-Turn-He 50.7 38 0.00083 22.2 4.3 34 52-85 55-88 (91)
245 PF01486 K-box: K-box region; 50.7 47 0.001 22.3 4.8 30 64-93 70-99 (100)
246 PF14712 Snapin_Pallidin: Snap 50.6 69 0.0015 20.9 6.4 33 63-95 15-47 (92)
247 KOG3958|consensus 50.5 1.2E+02 0.0026 25.8 8.0 72 9-92 117-207 (371)
248 PF04100 Vps53_N: Vps53-like, 50.5 62 0.0014 27.2 6.4 45 44-92 4-48 (383)
249 PF13863 DUF4200: Domain of un 50.3 45 0.00098 22.8 4.8 29 61-89 80-108 (126)
250 PF15112 DUF4559: Domain of un 50.3 62 0.0014 27.1 6.3 64 27-94 236-306 (307)
251 PRK14872 rod shape-determining 50.3 20 0.00044 30.1 3.5 32 61-92 63-97 (337)
252 PF12329 TMF_DNA_bd: TATA elem 50.2 65 0.0014 21.1 5.2 13 76-88 54-66 (74)
253 PF07926 TPR_MLP1_2: TPR/MLP1/ 50.2 41 0.00089 23.9 4.6 36 61-96 58-93 (132)
254 PF12017 Tnp_P_element: Transp 50.1 28 0.0006 27.8 4.0 30 66-95 15-44 (236)
255 KOG4234|consensus 49.9 24 0.00052 28.8 3.7 26 35-61 176-201 (271)
256 PF10224 DUF2205: Predicted co 49.7 67 0.0015 21.7 5.3 22 67-88 28-49 (80)
257 PF08776 VASP_tetra: VASP tetr 49.7 56 0.0012 19.6 5.3 27 61-87 2-29 (40)
258 PHA02046 hypothetical protein 49.6 54 0.0012 23.2 5.0 45 35-79 26-77 (99)
259 cd04785 HTH_CadR-PbrR-like Hel 49.4 88 0.0019 21.8 7.4 34 64-97 81-114 (126)
260 PRK14158 heat shock protein Gr 49.3 44 0.00095 26.0 4.9 31 63-93 48-78 (194)
261 PF04012 PspA_IM30: PspA/IM30 49.1 50 0.0011 24.9 5.2 45 44-92 84-128 (221)
262 PRK14140 heat shock protein Gr 49.1 47 0.001 25.7 5.1 29 64-92 46-74 (191)
263 PHA03162 hypothetical protein; 49.0 31 0.00066 25.8 3.8 25 61-85 12-36 (135)
264 TIGR02338 gimC_beta prefoldin, 49.0 56 0.0012 22.5 5.0 29 65-93 70-98 (110)
265 PF05557 MAD: Mitotic checkpoi 49.0 22 0.00047 32.0 3.6 34 61-94 502-535 (722)
266 cd09236 V_AnPalA_UmRIM20_like 49.0 1.4E+02 0.003 24.6 8.1 28 11-38 134-161 (353)
267 PF11393 IcmL: Macrophage kill 48.9 22 0.00047 24.6 2.9 23 11-33 53-75 (108)
268 PF09787 Golgin_A5: Golgin sub 48.9 38 0.00082 29.4 5.0 83 15-97 208-309 (511)
269 PF01920 Prefoldin_2: Prefoldi 48.8 69 0.0015 20.9 5.3 40 62-101 5-44 (106)
270 PF03962 Mnd1: Mnd1 family; I 48.7 52 0.0011 25.0 5.2 77 14-97 15-97 (188)
271 TIGR01242 26Sp45 26S proteasom 48.6 44 0.00096 27.1 5.1 37 62-98 6-42 (364)
272 PF08826 DMPK_coil: DMPK coile 48.5 61 0.0013 20.8 4.8 33 62-94 18-50 (61)
273 PF04568 IATP: Mitochondrial A 48.4 41 0.00089 23.6 4.3 12 81-92 88-99 (100)
274 PF05308 Mito_fiss_reg: Mitoch 48.2 22 0.00047 28.7 3.2 37 64-100 110-146 (253)
275 PF09278 MerR-DNA-bind: MerR, 48.0 61 0.0013 19.6 6.5 25 65-89 39-63 (65)
276 cd04790 HTH_Cfa-like_unk Helix 48.0 1E+02 0.0022 22.9 6.6 47 47-95 61-107 (172)
277 PF01025 GrpE: GrpE; InterPro 48.0 41 0.00089 24.1 4.4 34 62-95 18-51 (165)
278 PF11559 ADIP: Afadin- and alp 47.8 47 0.001 23.7 4.7 30 62-91 66-95 (151)
279 PRK12726 flagellar biosynthesi 47.8 15 0.00033 31.7 2.4 43 15-57 146-194 (407)
280 PRK14144 heat shock protein Gr 47.8 47 0.001 26.0 4.9 33 62-94 52-84 (199)
281 PRK09413 IS2 repressor TnpA; R 47.7 40 0.00086 23.4 4.2 27 60-86 76-102 (121)
282 PRK13729 conjugal transfer pil 47.6 34 0.00073 30.3 4.5 25 69-93 97-121 (475)
283 PHA03155 hypothetical protein; 47.4 37 0.0008 24.7 4.0 26 71-96 10-35 (115)
284 PRK14160 heat shock protein Gr 47.2 43 0.00092 26.4 4.6 29 64-92 56-84 (211)
285 PF00038 Filament: Intermediat 47.2 91 0.002 24.5 6.6 22 15-36 12-33 (312)
286 COG0576 GrpE Molecular chapero 47.1 50 0.0011 25.3 4.9 34 62-95 43-76 (193)
287 KOG4438|consensus 47.1 2E+02 0.0044 25.3 9.1 81 9-95 126-206 (446)
288 COG4026 Uncharacterized protei 47.1 43 0.00093 27.5 4.7 25 70-94 150-174 (290)
289 PF05597 Phasin: Poly(hydroxya 47.0 27 0.00058 25.5 3.3 21 75-95 108-128 (132)
290 PF05812 Herpes_BLRF2: Herpesv 46.9 31 0.00067 25.1 3.6 27 70-96 4-30 (118)
291 PF05278 PEARLI-4: Arabidopsis 46.9 91 0.002 25.6 6.6 84 13-96 154-241 (269)
292 PF12808 Mto2_bdg: Micro-tubul 46.7 25 0.00054 22.1 2.7 24 71-94 24-47 (52)
293 PF06120 Phage_HK97_TLTM: Tail 46.6 58 0.0012 27.0 5.5 65 31-95 34-107 (301)
294 PRK13169 DNA replication intia 46.3 58 0.0013 23.2 4.8 29 61-89 28-56 (110)
295 PF09269 DUF1967: Domain of un 46.2 19 0.0004 23.2 2.1 19 13-31 33-51 (69)
296 KOG4343|consensus 46.2 28 0.0006 31.7 3.8 38 61-98 308-345 (655)
297 PF10186 Atg14: UV radiation r 46.1 52 0.0011 25.2 4.9 26 65-90 73-98 (302)
298 PF10211 Ax_dynein_light: Axon 46.1 45 0.00097 25.4 4.5 32 64-95 122-153 (189)
299 PRK10227 DNA-binding transcrip 46.1 1.1E+02 0.0024 21.9 8.3 33 64-96 81-113 (135)
300 PF14584 DUF4446: Protein of u 46.0 80 0.0017 23.5 5.7 31 64-94 48-78 (151)
301 PTZ00378 hypothetical protein; 46.0 39 0.00084 30.2 4.6 40 16-57 6-45 (518)
302 PRK14146 heat shock protein Gr 45.9 51 0.0011 25.9 4.9 33 62-94 61-93 (215)
303 PHA03162 hypothetical protein; 45.8 31 0.00068 25.7 3.5 26 70-95 14-39 (135)
304 cd00584 Prefoldin_alpha Prefol 45.8 51 0.0011 22.8 4.5 34 62-95 87-120 (129)
305 PLN02939 transferase, transfer 45.8 35 0.00075 32.7 4.5 88 10-97 200-292 (977)
306 PF07544 Med9: RNA polymerase 45.7 5.3 0.00011 26.7 -0.6 28 64-91 54-81 (83)
307 PF13851 GAS: Growth-arrest sp 45.7 42 0.00092 25.8 4.4 34 64-97 50-83 (201)
308 KOG3156|consensus 45.6 1.3E+02 0.0028 24.1 7.2 64 29-93 46-140 (220)
309 PRK07857 hypothetical protein; 45.6 67 0.0015 22.8 5.0 40 60-99 26-65 (106)
310 KOG2536|consensus 45.5 21 0.00045 29.3 2.7 26 12-37 217-242 (263)
311 TIGR01061 parC_Gpos DNA topois 45.5 1.1E+02 0.0023 28.3 7.5 66 18-83 364-448 (738)
312 TIGR01063 gyrA DNA gyrase, A s 45.3 1.1E+02 0.0025 28.3 7.7 68 18-85 364-450 (800)
313 TIGR02231 conserved hypothetic 45.2 1.4E+02 0.0031 25.6 7.9 49 47-98 126-174 (525)
314 PF07412 Geminin: Geminin; In 45.2 29 0.00063 27.3 3.4 24 65-88 128-151 (200)
315 PF10186 Atg14: UV radiation r 45.2 49 0.0011 25.3 4.7 33 62-94 63-95 (302)
316 PF04880 NUDE_C: NUDE protein, 45.1 11 0.00023 28.9 0.9 31 62-93 24-54 (166)
317 PRK15114 tRNA (cytidine/uridin 45.0 62 0.0013 25.5 5.3 53 23-75 185-238 (245)
318 PF06698 DUF1192: Protein of u 44.7 71 0.0015 20.5 4.6 31 62-94 16-46 (59)
319 PF14389 Lzipper-MIP1: Leucine 44.6 69 0.0015 21.6 4.8 33 61-93 53-85 (88)
320 PF14193 DUF4315: Domain of un 44.5 75 0.0016 21.6 5.0 29 61-89 7-35 (83)
321 PRK08032 fliD flagellar cappin 44.4 79 0.0017 27.1 6.2 45 48-92 392-436 (462)
322 PF13747 DUF4164: Domain of un 44.3 99 0.0021 20.9 6.5 63 24-93 15-77 (89)
323 PF10883 DUF2681: Protein of u 44.3 75 0.0016 21.9 5.0 31 61-91 29-59 (87)
324 PHA02047 phage lambda Rz1-like 44.3 77 0.0017 22.6 5.1 38 52-92 27-64 (101)
325 PF07989 Microtub_assoc: Micro 44.2 60 0.0013 21.4 4.4 26 67-92 48-73 (75)
326 COG1579 Zn-ribbon protein, pos 44.2 83 0.0018 25.3 5.9 86 10-96 23-123 (239)
327 PF05667 DUF812: Protein of un 44.1 2.1E+02 0.0047 25.8 9.0 69 21-93 461-529 (594)
328 COG2433 Uncharacterized conser 44.0 52 0.0011 30.2 5.2 34 63-96 423-456 (652)
329 PF00038 Filament: Intermediat 43.8 53 0.0011 25.8 4.8 29 64-92 218-246 (312)
330 COG3599 DivIVA Cell division i 43.8 49 0.0011 26.1 4.5 32 65-96 33-64 (212)
331 PF09340 NuA4: Histone acetylt 43.7 32 0.0007 22.9 3.1 29 69-97 2-30 (80)
332 smart00787 Spc7 Spc7 kinetocho 43.6 84 0.0018 25.9 6.0 31 62-92 204-234 (312)
333 PF11336 DUF3138: Protein of u 43.5 34 0.00075 30.3 3.9 31 67-97 23-53 (514)
334 cd08915 V_Alix_like Protein-in 43.5 1.2E+02 0.0025 24.6 6.8 26 12-37 134-159 (342)
335 PRK13729 conjugal transfer pil 43.4 36 0.00077 30.1 4.0 17 79-95 100-116 (475)
336 PF01527 HTH_Tnp_1: Transposas 43.3 25 0.00055 21.7 2.4 66 7-78 7-74 (76)
337 TIGR02977 phageshock_pspA phag 43.1 59 0.0013 24.9 4.8 31 63-93 100-130 (219)
338 TIGR03595 Obg_CgtA_exten Obg f 43.1 22 0.00048 22.9 2.1 20 13-32 33-52 (69)
339 KOG3119|consensus 43.1 39 0.00084 27.1 3.9 29 68-96 214-242 (269)
340 PRK14145 heat shock protein Gr 42.9 63 0.0014 25.2 4.9 33 60-92 43-82 (196)
341 PRK05431 seryl-tRNA synthetase 42.8 34 0.00074 29.1 3.8 82 13-95 11-99 (425)
342 cd04770 HTH_HMRTR Helix-Turn-H 42.8 1.1E+02 0.0023 21.0 7.0 34 64-97 81-114 (123)
343 PF09304 Cortex-I_coil: Cortex 42.6 92 0.002 22.4 5.4 28 65-92 47-74 (107)
344 COG3599 DivIVA Cell division i 42.4 56 0.0012 25.7 4.6 31 61-91 36-66 (212)
345 PF15619 Lebercilin: Ciliary p 42.4 54 0.0012 25.2 4.5 42 61-102 11-59 (194)
346 PF08781 DP: Transcription fac 42.2 72 0.0016 23.8 5.0 32 63-94 2-33 (142)
347 PF11461 RILP: Rab interacting 42.2 26 0.00057 22.6 2.3 30 63-92 4-33 (60)
348 PF04380 BMFP: Membrane fusoge 42.2 51 0.0011 21.7 3.8 54 43-96 4-77 (79)
349 PF11461 RILP: Rab interacting 42.1 82 0.0018 20.3 4.6 31 69-99 3-33 (60)
350 PF10455 BAR_2: Bin/amphiphysi 42.1 29 0.00064 28.6 3.1 54 48-105 11-64 (289)
351 PRK11677 hypothetical protein; 42.1 1E+02 0.0022 22.6 5.7 38 46-85 15-52 (134)
352 KOG4119|consensus 42.0 58 0.0012 21.7 4.0 37 61-97 6-42 (71)
353 cd01107 HTH_BmrR Helix-Turn-He 41.9 1.1E+02 0.0024 20.8 6.2 32 62-93 75-106 (108)
354 PF08614 ATG16: Autophagy prot 41.8 78 0.0017 23.8 5.2 23 63-85 117-139 (194)
355 PRK10722 hypothetical protein; 41.7 64 0.0014 26.3 4.9 31 59-89 173-203 (247)
356 PF11471 Sugarporin_N: Maltopo 41.7 73 0.0016 20.3 4.3 30 67-96 30-59 (60)
357 PF04165 DUF401: Protein of un 41.7 24 0.00053 29.9 2.7 21 16-36 266-286 (385)
358 PRK14140 heat shock protein Gr 41.6 64 0.0014 25.0 4.8 36 60-95 35-70 (191)
359 cd00632 Prefoldin_beta Prefold 41.5 1.1E+02 0.0023 20.8 5.4 38 59-96 60-97 (105)
360 PRK14154 heat shock protein Gr 41.4 50 0.0011 26.0 4.2 36 61-96 51-86 (208)
361 COG5034 TNG2 Chromatin remodel 41.4 1.1E+02 0.0025 25.2 6.4 64 14-82 19-82 (271)
362 PF04899 MbeD_MobD: MbeD/MobD 41.4 87 0.0019 20.6 4.8 34 62-95 28-61 (70)
363 PF09726 Macoilin: Transmembra 41.4 48 0.001 30.3 4.7 30 61-90 459-488 (697)
364 PRK14148 heat shock protein Gr 41.3 68 0.0015 24.9 4.9 31 63-93 41-71 (195)
365 cd07429 Cby_like Chibby, a nuc 41.3 49 0.0011 23.7 3.8 26 68-93 71-96 (108)
366 PLN02590 probable tyrosine dec 41.1 99 0.0021 27.3 6.4 56 14-71 57-117 (539)
367 PRK03430 hypothetical protein; 41.1 24 0.00053 26.6 2.3 25 10-34 82-106 (157)
368 PF10911 DUF2717: Protein of u 41.0 18 0.00039 24.6 1.4 15 18-32 33-47 (77)
369 PF06120 Phage_HK97_TLTM: Tail 40.9 58 0.0013 27.0 4.7 40 60-99 79-118 (301)
370 TIGR02132 phaR_Bmeg polyhydrox 40.9 1.4E+02 0.0031 23.4 6.5 73 14-86 57-138 (189)
371 PF04712 Radial_spoke: Radial 40.7 49 0.0011 28.9 4.4 37 14-52 6-48 (491)
372 PF05278 PEARLI-4: Arabidopsis 40.7 61 0.0013 26.6 4.7 22 14-40 121-142 (269)
373 PF07798 DUF1640: Protein of u 40.5 90 0.0019 23.2 5.3 35 50-86 63-97 (177)
374 PF09748 Med10: Transcription 40.5 1.4E+02 0.0029 21.4 7.8 70 26-98 35-120 (128)
375 KOG0483|consensus 40.4 53 0.0011 25.7 4.2 33 61-93 111-143 (198)
376 PRK14160 heat shock protein Gr 40.3 71 0.0015 25.2 4.9 32 62-93 68-99 (211)
377 TIGR01242 26Sp45 26S proteasom 40.3 40 0.00087 27.4 3.7 26 63-88 14-39 (364)
378 cd01282 HTH_MerR-like_sg3 Heli 39.9 1.2E+02 0.0026 20.7 7.2 31 62-92 81-111 (112)
379 PF11221 Med21: Subunit 21 of 39.9 1.4E+02 0.0031 21.5 6.7 70 12-94 63-136 (144)
380 COG3937 Uncharacterized conser 39.8 51 0.0011 23.7 3.7 39 45-85 68-106 (108)
381 TIGR00634 recN DNA repair prot 39.5 98 0.0021 27.0 6.1 51 48-98 287-344 (563)
382 PRK06835 DNA replication prote 39.4 85 0.0018 25.8 5.5 39 47-85 50-88 (329)
383 PF08700 Vps51: Vps51/Vps67; 39.2 1E+02 0.0022 19.6 4.9 12 45-56 7-18 (87)
384 PLN02880 tyrosine decarboxylas 39.1 92 0.002 26.8 5.8 45 14-60 13-57 (490)
385 TIGR02044 CueR Cu(I)-responsiv 39.0 1.3E+02 0.0029 20.9 8.5 33 64-96 81-113 (127)
386 PF10211 Ax_dynein_light: Axon 39.0 75 0.0016 24.2 4.8 33 61-93 126-158 (189)
387 cd04769 HTH_MerR2 Helix-Turn-H 39.0 1.3E+02 0.0027 20.6 6.2 33 64-96 81-113 (116)
388 PF09744 Jnk-SapK_ap_N: JNK_SA 38.9 69 0.0015 24.0 4.5 30 65-94 85-114 (158)
389 PF10481 CENP-F_N: Cenp-F N-te 38.9 69 0.0015 26.8 4.8 26 61-86 277-302 (307)
390 KOG4797|consensus 38.9 71 0.0015 23.4 4.3 25 66-90 64-88 (123)
391 PF08172 CASP_C: CASP C termin 38.9 78 0.0017 25.3 5.0 21 19-39 15-35 (248)
392 PF10458 Val_tRNA-synt_C: Valy 38.9 99 0.0021 19.4 5.4 43 47-89 20-66 (66)
393 KOG4098|consensus 38.7 78 0.0017 23.7 4.6 38 62-99 22-59 (140)
394 PF10815 ComZ: ComZ; InterPro 38.4 26 0.00055 22.5 1.8 24 15-38 16-49 (56)
395 PTZ00454 26S protease regulato 38.3 72 0.0016 26.9 5.0 37 62-98 29-65 (398)
396 COG1315 Uncharacterized conser 38.1 1.1E+02 0.0024 27.6 6.2 62 26-95 426-487 (543)
397 PF12097 DUF3573: Protein of u 38.1 47 0.001 28.6 3.8 24 61-84 41-64 (383)
398 COG1579 Zn-ribbon protein, pos 38.0 63 0.0014 26.0 4.4 34 62-95 45-78 (239)
399 PRK14158 heat shock protein Gr 38.0 93 0.002 24.1 5.2 35 61-95 39-73 (194)
400 PF13949 ALIX_LYPXL_bnd: ALIX 37.9 77 0.0017 24.6 4.8 26 12-37 85-110 (296)
401 KOG4603|consensus 37.9 93 0.002 24.5 5.1 37 59-95 76-112 (201)
402 KOG0995|consensus 37.8 68 0.0015 29.1 4.9 32 62-93 294-325 (581)
403 PF09726 Macoilin: Transmembra 37.7 1.3E+02 0.0027 27.7 6.7 79 10-97 572-657 (697)
404 PF04012 PspA_IM30: PspA/IM30 37.5 1.4E+02 0.003 22.5 6.0 71 24-97 1-72 (221)
405 PF10779 XhlA: Haemolysin XhlA 37.5 1E+02 0.0022 19.6 4.6 33 63-95 14-46 (71)
406 PF10473 CENP-F_leu_zip: Leuci 37.5 78 0.0017 23.4 4.5 30 67-96 71-100 (140)
407 PF11365 DUF3166: Protein of u 37.5 69 0.0015 22.4 4.0 31 62-92 15-45 (96)
408 PRK14145 heat shock protein Gr 37.5 1.6E+02 0.0036 22.9 6.5 32 64-95 40-71 (196)
409 PF12718 Tropomyosin_1: Tropom 37.4 78 0.0017 23.1 4.5 25 64-88 37-61 (143)
410 COG1938 Archaeal enzymes of AT 37.3 1.1E+02 0.0023 24.8 5.6 45 45-93 191-235 (244)
411 KOG4787|consensus 37.3 57 0.0012 30.3 4.4 44 60-103 330-373 (852)
412 PF05615 THOC7: Tho complex su 37.2 93 0.002 22.0 4.8 22 22-43 14-35 (139)
413 COG5244 NIP100 Dynactin comple 37.2 1.6E+02 0.0035 26.8 7.1 57 23-86 228-284 (669)
414 COG5570 Uncharacterized small 37.0 1E+02 0.0022 19.8 4.4 33 49-81 20-52 (57)
415 PF11172 DUF2959: Protein of u 36.8 67 0.0015 25.4 4.3 38 44-86 150-187 (201)
416 TIGR00293 prefoldin, archaeal 36.7 99 0.0021 21.3 4.8 34 62-95 86-119 (126)
417 PF08286 Spc24: Spc24 subunit 36.7 12 0.00025 26.3 0.0 28 69-96 13-40 (118)
418 PHA02562 46 endonuclease subun 36.7 2.6E+02 0.0057 23.6 8.9 80 11-96 110-201 (562)
419 PF03962 Mnd1: Mnd1 family; I 36.5 84 0.0018 23.9 4.7 20 76-95 110-129 (188)
420 TIGR02047 CadR-PbrR Cd(II)/Pb( 36.5 1.5E+02 0.0032 20.8 8.8 33 64-96 81-113 (127)
421 PRK10698 phage shock protein P 36.5 1.3E+02 0.0028 23.4 5.8 71 24-97 2-73 (222)
422 PLN02320 seryl-tRNA synthetase 36.4 58 0.0013 28.8 4.3 82 12-95 75-163 (502)
423 cd01108 HTH_CueR Helix-Turn-He 36.2 1.5E+02 0.0032 20.7 8.6 33 64-96 81-113 (127)
424 PRK14139 heat shock protein Gr 36.2 79 0.0017 24.4 4.5 35 61-95 31-65 (185)
425 PF04420 CHD5: CHD5-like prote 36.1 64 0.0014 23.8 3.9 36 60-95 38-85 (161)
426 COG1382 GimC Prefoldin, chaper 36.1 1.3E+02 0.0029 21.8 5.4 80 14-95 20-103 (119)
427 PF10805 DUF2730: Protein of u 35.8 76 0.0016 22.0 4.0 26 68-93 64-89 (106)
428 PRK10963 hypothetical protein; 35.8 53 0.0011 25.4 3.5 20 63-82 45-64 (223)
429 PF08946 Osmo_CC: Osmosensory 35.8 1E+02 0.0023 19.0 4.1 21 66-86 16-36 (46)
430 TIGR01005 eps_transp_fam exopo 35.8 2E+02 0.0044 25.7 7.6 23 57-79 311-333 (754)
431 PRK14147 heat shock protein Gr 35.7 63 0.0014 24.5 3.9 34 62-95 18-51 (172)
432 COG4969 PilA Tfp pilus assembl 35.7 26 0.00057 25.2 1.7 18 15-32 29-46 (125)
433 COG1382 GimC Prefoldin, chaper 35.6 90 0.0019 22.7 4.5 37 62-98 77-113 (119)
434 COG3132 Uncharacterized protei 35.5 43 0.00092 26.6 3.0 23 73-95 189-211 (215)
435 KOG4005|consensus 35.3 80 0.0017 26.1 4.6 30 64-93 106-135 (292)
436 cd04768 HTH_BmrR-like Helix-Tu 35.1 1.2E+02 0.0026 20.1 4.9 9 48-56 61-69 (96)
437 PF04201 TPD52: Tumour protein 35.0 1.4E+02 0.0031 22.8 5.7 26 60-85 27-52 (162)
438 PF09738 DUF2051: Double stran 35.0 80 0.0017 26.1 4.7 24 70-93 141-164 (302)
439 PF09849 DUF2076: Uncharacteri 34.7 2.1E+02 0.0046 23.0 6.9 60 32-94 12-73 (247)
440 KOG2189|consensus 34.7 88 0.0019 29.6 5.2 40 52-93 84-123 (829)
441 PF11180 DUF2968: Protein of u 34.7 1.2E+02 0.0026 23.8 5.4 34 62-95 154-187 (192)
442 PRK09343 prefoldin subunit bet 34.6 1.2E+02 0.0026 21.4 5.0 31 65-95 81-111 (121)
443 KOG0976|consensus 34.6 1E+02 0.0022 29.8 5.7 45 45-89 463-510 (1265)
444 cd04775 HTH_Cfa-like Helix-Tur 34.5 1.4E+02 0.0031 20.0 6.2 27 64-90 73-99 (102)
445 PF03449 GreA_GreB_N: Transcri 34.4 1.3E+02 0.0027 19.7 4.7 31 56-86 40-70 (74)
446 PF08614 ATG16: Autophagy prot 34.4 1.1E+02 0.0025 22.9 5.1 33 62-94 102-134 (194)
447 PRK10265 chaperone-modulator p 34.3 92 0.002 21.3 4.2 38 50-87 59-96 (101)
448 PF14723 SSFA2_C: Sperm-specif 34.2 84 0.0018 24.5 4.4 34 59-92 142-175 (179)
449 PF14916 CCDC92: Coiled-coil d 34.2 41 0.0009 21.7 2.3 23 71-93 23-45 (60)
450 PF10205 KLRAQ: Predicted coil 34.0 1.7E+02 0.0037 20.7 6.1 34 62-95 40-73 (102)
451 COG4238 Murein lipoprotein [Ce 34.0 1.5E+02 0.0032 20.2 5.0 35 59-93 22-56 (78)
452 PF10845 DUF2576: Protein of u 34.0 71 0.0015 19.8 3.2 21 62-82 11-31 (48)
453 PF07412 Geminin: Geminin; In 34.0 1E+02 0.0022 24.3 4.9 29 67-95 123-151 (200)
454 cd04765 HTH_MlrA-like_sg2 Heli 34.0 62 0.0013 21.9 3.3 18 74-91 81-98 (99)
455 KOG4571|consensus 34.0 92 0.002 26.0 4.8 32 62-93 248-279 (294)
456 PF04728 LPP: Lipoprotein leuc 33.9 1.3E+02 0.0028 19.2 5.1 24 63-86 11-34 (56)
457 PRK11239 hypothetical protein; 33.9 71 0.0015 25.5 4.0 28 69-96 183-210 (215)
458 PF11559 ADIP: Afadin- and alp 33.9 1.2E+02 0.0026 21.6 4.9 29 64-92 61-89 (151)
459 KOG0963|consensus 33.8 70 0.0015 29.3 4.4 40 61-100 234-273 (629)
460 PRK06664 fliD flagellar hook-a 33.8 1.2E+02 0.0027 27.6 6.0 46 47-92 585-630 (661)
461 TIGR02338 gimC_beta prefoldin, 33.7 1.4E+02 0.0031 20.4 5.1 40 62-101 10-49 (110)
462 PF13851 GAS: Growth-arrest sp 33.6 1.1E+02 0.0025 23.4 5.1 34 61-94 99-132 (201)
463 PF05384 DegS: Sensor protein 33.6 1.2E+02 0.0025 22.9 5.0 30 62-91 27-56 (159)
464 KOG0995|consensus 33.5 1.7E+02 0.0037 26.7 6.7 78 15-92 277-362 (581)
465 PHA03011 hypothetical protein; 33.5 92 0.002 22.6 4.2 35 62-96 57-91 (120)
466 PF07889 DUF1664: Protein of u 33.4 1.2E+02 0.0026 22.1 4.9 35 62-96 89-123 (126)
467 KOG0930|consensus 33.4 1E+02 0.0022 26.2 5.1 42 60-101 15-56 (395)
468 PF10066 DUF2304: Uncharacteri 33.3 1.3E+02 0.0029 20.8 5.0 26 30-61 42-67 (115)
469 PF12711 Kinesin-relat_1: Kine 33.2 1.2E+02 0.0027 20.8 4.7 39 59-97 21-65 (86)
470 PF05667 DUF812: Protein of un 33.2 83 0.0018 28.3 4.8 35 62-96 328-362 (594)
471 PRK14143 heat shock protein Gr 33.1 1.1E+02 0.0023 24.5 5.0 35 61-95 66-100 (238)
472 COG1792 MreC Cell shape-determ 33.1 1.2E+02 0.0025 24.6 5.2 37 61-97 65-104 (284)
473 PF14523 Syntaxin_2: Syntaxin- 33.1 1.4E+02 0.0031 19.5 5.3 45 47-95 15-59 (102)
474 KOG0570|consensus 33.1 2E+02 0.0043 23.1 6.4 42 13-56 149-190 (223)
475 PRK10246 exonuclease subunit S 32.9 1.3E+02 0.0029 28.4 6.3 63 31-93 184-247 (1047)
476 PRK10698 phage shock protein P 32.9 98 0.0021 24.1 4.7 31 63-93 100-130 (222)
477 PF01763 Herpes_UL6: Herpesvir 32.8 1.2E+02 0.0026 27.3 5.7 38 62-99 370-407 (557)
478 KOG4055|consensus 32.8 35 0.00076 27.0 2.1 48 9-57 13-74 (213)
479 cd07357 HN_L-whirlin_R2_like S 32.6 29 0.00063 23.8 1.5 38 17-55 29-66 (81)
480 PF02996 Prefoldin: Prefoldin 32.6 1.2E+02 0.0025 20.4 4.5 31 64-94 79-109 (120)
481 PF10506 MCC-bdg_PDZ: PDZ doma 32.5 1.2E+02 0.0026 19.8 4.4 35 63-97 6-40 (67)
482 PRK14011 prefoldin subunit alp 32.5 1.1E+02 0.0024 22.5 4.7 29 62-90 3-31 (144)
483 KOG0963|consensus 32.5 1.9E+02 0.0041 26.6 6.9 89 8-97 56-159 (629)
484 PF04849 HAP1_N: HAP1 N-termin 32.5 95 0.0021 25.9 4.7 32 62-93 234-265 (306)
485 cd01111 HTH_MerD Helix-Turn-He 32.4 88 0.0019 21.5 3.9 25 70-94 81-105 (107)
486 PRK13960 phosphoribosylaminoim 32.4 1.2E+02 0.0026 26.0 5.3 22 2-23 275-296 (367)
487 PF02996 Prefoldin: Prefoldin 32.2 88 0.0019 21.0 3.9 42 44-88 76-117 (120)
488 PF13591 MerR_2: MerR HTH fami 32.2 74 0.0016 20.9 3.4 33 50-82 51-83 (84)
489 PF06657 Cep57_MT_bd: Centroso 32.0 1.5E+02 0.0033 19.6 5.2 34 65-98 13-46 (79)
490 PF11365 DUF3166: Protein of u 31.9 1.8E+02 0.0039 20.3 5.9 31 68-98 14-44 (96)
491 PRK14163 heat shock protein Gr 31.9 97 0.0021 24.5 4.5 35 61-95 39-73 (214)
492 PF04822 Takusan: Takusan; In 31.6 1.6E+02 0.0034 20.0 4.9 37 62-98 11-48 (84)
493 PF03670 UPF0184: Uncharacteri 31.5 1.2E+02 0.0026 20.8 4.3 32 63-94 41-72 (83)
494 KOG4809|consensus 31.5 89 0.0019 28.6 4.6 36 61-96 330-365 (654)
495 PF08340 DUF1732: Domain of un 31.4 1.8E+02 0.0038 20.1 6.0 63 14-96 25-87 (87)
496 PRK14142 heat shock protein Gr 31.4 90 0.0019 25.0 4.2 38 55-94 35-72 (223)
497 COG1730 GIM5 Predicted prefold 31.3 1.4E+02 0.0029 22.3 5.0 35 61-95 100-134 (145)
498 PF05384 DegS: Sensor protein 31.3 1E+02 0.0022 23.2 4.4 33 64-96 22-54 (159)
499 KOG0805|consensus 31.3 29 0.00062 29.0 1.5 11 13-23 82-92 (337)
500 PF05873 Mt_ATP-synt_D: ATP sy 31.3 52 0.0011 24.6 2.8 80 4-90 44-124 (161)
No 1
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=97.80 E-value=1.8e-05 Score=47.72 Aligned_cols=36 Identities=39% Similarity=0.724 Sum_probs=31.0
Q ss_pred HHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhh
Q psy16078 16 FRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNL 54 (111)
Q Consensus 16 FRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~L 54 (111)
-|+||.+. |+..|++.|..+- ..||+||++||-++|
T Consensus 2 ~r~YL~~~-v~p~L~~gL~~l~--~~rP~DPi~~La~~L 37 (42)
T PF05186_consen 2 ARQYLKET-VGPVLTEGLAELA--KERPEDPIEFLAEYL 37 (42)
T ss_dssp HHHHHHHH-THHHHHHHHHHHH--HH--SSHHHHHHHHH
T ss_pred HHHHHHHH-hHHHHHHHHHHHH--HHCCCChHHHHHHHH
Confidence 48999986 9999999999996 789999999999887
No 2
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.34 E-value=0.05 Score=33.17 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
-|++.|+...+.|+..++.|.+++..|++++..+
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777666666544
No 3
>PRK14127 cell division protein GpsB; Provisional
Probab=94.79 E-value=0.14 Score=36.67 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
.+++.|..++.+|+.++.+|+.++.++++++..+.+..
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~ 74 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSS 74 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 56888999999999999999999999999999886653
No 4
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.63 E-value=0.12 Score=31.47 Aligned_cols=32 Identities=38% Similarity=0.580 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..++.|+.+++.|+++++.|..++..|+..+.
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56888999999999999999999999988875
No 5
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.57 E-value=0.073 Score=40.58 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=39.1
Q ss_pred CCHHHHHHHhhCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 44 EDPLDFIRRNLGDERPE----VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~----~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
.+.+.||++. +...|. ..+...|+.++.+|+++++.|++++..|..++..|+.
T Consensus 83 ~~vI~fLq~l-~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 83 QDVISFLQNL-KTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888554 433232 2577888888999999999999999988888776643
No 6
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=93.29 E-value=0.23 Score=41.44 Aligned_cols=46 Identities=15% Similarity=0.327 Sum_probs=40.1
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.+.++.+-..||- |+..||+.+.+.+.+|+.++.+|++++.+|+++
T Consensus 273 qe~~e~~L~~Lnl--PTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 273 QEIVEALLKMLNL--PTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566677778888 999999999999999999999999999988765
No 7
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=93.28 E-value=0.3 Score=34.26 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
...-.+..++++++++++++..|+++++.|+.++..+..+
T Consensus 24 ~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 24 NGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4467888888888888888888888888888888877653
No 8
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=93.07 E-value=0.29 Score=31.06 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.....+..+++++++++.+++.|++++++|+.+++.+
T Consensus 14 ~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 14 SGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467788888999999999999999999999888887
No 9
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=92.97 E-value=0.082 Score=34.32 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=32.8
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+|.||-- .-.+|++-||..+.+|..++.+|+.+|.-|++..
T Consensus 4 VKtHLm~--AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 4 VKTHLMY--AVREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp CCCHGGG--T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444443 3368999999999999999999999999888765
No 10
>PHA01750 hypothetical protein
Probab=92.50 E-value=0.4 Score=32.14 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..|+++|+.|+++++.++..|++++.+++.++.+
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 4789999999999999999999999999998764
No 11
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.34 E-value=0.4 Score=31.95 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=38.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+-|+.+.|+..+| ..++.+..+|-+|+.++..|++++.+++..|.+.+
T Consensus 23 I~fLee~l~~~~~--~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 23 IYFLEERLQKLGP--ESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588888886444 66788888999999999999999999888887654
No 12
>smart00338 BRLZ basic region leucin zipper.
Probab=92.22 E-value=0.5 Score=29.76 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
...+..|..+|.+|+.++..|..++..|+..+.
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777888888888888888888888777653
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.50 E-value=0.59 Score=30.99 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+.|..|+.++++|+.++..|..++..|+....++.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 55777777788887777777777776666655554
No 14
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.47 E-value=0.65 Score=32.86 Aligned_cols=48 Identities=31% Similarity=0.437 Sum_probs=39.3
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+.-+-+.++. ...++..|+..+.+|-.++.+|+-+|..|+.+|.+.+.
T Consensus 10 l~~le~~l~~---l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 10 LDQLEQQLGQ---LLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555554 25889999999999999999999999999999988876
No 15
>KOG4797|consensus
Probab=90.56 E-value=0.55 Score=34.19 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 40 EEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 40 ~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+.|=+.|+|.+|.||-- .-.+|++-||..+.+|..++..|++++.-|+.
T Consensus 47 DNKIeQAMDLVKtHLmf--AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 47 DNKIEQAMDLVKTHLMF--AVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred chHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556789999999876 45799999999999999999999999988873
No 16
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.35 E-value=0.92 Score=32.44 Aligned_cols=48 Identities=33% Similarity=0.387 Sum_probs=38.9
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+.-+-+.++. ...++..|+..+.+|-.++.+|+-+|..|+.+|.+.+.
T Consensus 10 l~~le~~l~~---l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 10 LDDLEQNLGV---LLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555 25789999999999999999999999999999998744
No 17
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=90.15 E-value=2 Score=29.46 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHhcChHHHHHHH--HHHH----hc-------CCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q psy16078 11 KNKEAFRRYLEQSGVVDAITSA--LVML----YS-------IEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAE 77 (111)
Q Consensus 11 sKrEeFRkYLE~~GVlDaLTkv--LV~L----YE-------e~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~ 77 (111)
+=+++|-.-++...|...|... ||.= .. -+..+-+|-+-|+.||.. --...++.|...++.++.+
T Consensus 18 ~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~--~~~~~~~~L~~~l~~l~~e 95 (109)
T PF03980_consen 18 NCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAP--YKKKEREQLNARLQELEEE 95 (109)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHH--HHHHHHHHHHHHHHHHHHH
Confidence 3467899999999998777653 3321 11 111124567777777776 3356666677777777777
Q ss_pred HHHHHHHHHHHH
Q psy16078 78 LDQLTATVANLK 89 (111)
Q Consensus 78 i~~L~~e~~eL~ 89 (111)
+..|..++..++
T Consensus 96 N~~L~~~i~~~r 107 (109)
T PF03980_consen 96 NEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHhh
Confidence 766666666554
No 18
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.41 E-value=0.66 Score=34.14 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
++.+++..|..++.+|+.++..|+.++..|.++|..+....
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999988888776543
No 19
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=89.39 E-value=1.7 Score=28.89 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHhcCCCCC-CCHHHHHHHh-------hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 24 GVVDAITSALVMLYSIEEKP-EDPLDFIRRN-------LGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 24 GVlDaLTkvLV~LYEe~ekP-~dalefir~~-------Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
-.+|.|.+.+-.....-..| .+.-..++.. |+- .+.+|++.++.-+..++.+++.|+.++..|.++
T Consensus 6 ~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldl--VtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 6 KIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDL--VTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667777766666533333 2233333333 333 568999999999999999999999999988753
No 20
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=89.19 E-value=1.5 Score=27.48 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.+..|..+|..|+.++..|..++..|..+
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555555555543
No 21
>KOG4109|consensus
Probab=88.96 E-value=0.46 Score=34.53 Aligned_cols=39 Identities=28% Similarity=0.588 Sum_probs=32.7
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCC
Q psy16078 15 AFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGD 56 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~ 56 (111)
.=|+||.+. |.+-|+-=|-.| ..++|.||++|+-.+|-.
T Consensus 65 ptRqYLdqt-VaPiLL~Gm~~l--A~~rP~nPi~~LatyLlk 103 (116)
T KOG4109|consen 65 PTRQYLDQT-VAPILLQGMAAL--AKERPSNPISFLATYLLK 103 (116)
T ss_pred chhhhcccc-hhHHHHHHHHHH--HhhCCCCHHHHHHHHHhc
Confidence 358999764 888888888888 589999999999999865
No 22
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=88.16 E-value=1.1 Score=31.27 Aligned_cols=30 Identities=33% Similarity=0.254 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
..+++.+++++++++++++.|..++..|+.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 578888999999999999999999888875
No 23
>KOG0994|consensus
Probab=87.65 E-value=1.9 Score=42.07 Aligned_cols=70 Identities=24% Similarity=0.346 Sum_probs=58.0
Q ss_pred HHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 17 RRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 17 RkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
-+=|...||+-+++.-+..+ +.-|+-||..|+...+..+++++|-...+.|+.++..+...+.++...|.
T Consensus 1187 A~~l~~tGv~gay~s~f~~m-------e~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Ls 1256 (1758)
T KOG0994|consen 1187 AKELKQTGVLGAYASRFLDM-------EEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLS 1256 (1758)
T ss_pred HHHhhhccCchhhHhHHHHH-------HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 35688999999999988888 34588899999998888999999999888888888887777776666654
No 24
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.53 E-value=1.4 Score=36.82 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=43.1
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 51 RRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 51 r~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
-..||++.+...|||+|-.||--|++++..++.+..-++..+.+|..-
T Consensus 178 n~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 178 NYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788877788999999999999999999999999999999999774
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.30 E-value=1.9 Score=28.51 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
-+++.|+.+|..|..++..|..++..|+.
T Consensus 25 ~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 25 MENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35666666655555555555555555553
No 26
>PRK14127 cell division protein GpsB; Provisional
Probab=86.17 E-value=1.7 Score=31.09 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVES 100 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~ 100 (111)
++.+-.+++.+..++.+|+.++..|+.+|..|+..-.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667778889999999999999999999999887544
No 27
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=85.92 E-value=2.1 Score=26.98 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
..++..|+.+++++++++..|+++++.|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999888
No 28
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.88 E-value=3.7 Score=37.31 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
...++.|+.+|..|+.++++|+++|..|+++|....
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888999999999999999999999998887654
No 29
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=85.73 E-value=9.8 Score=26.53 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=47.9
Q ss_pred CCCChhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCC---------CCCCHHHHHHHHHHHHHHHH
Q psy16078 6 ETPNEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGD---------ERPEVAEYEAVLQDLDEAKA 76 (111)
Q Consensus 6 ~~~~dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~---------~~p~~~e~e~Lk~E~~~lk~ 76 (111)
+.+.+.|.+.-..+++..--+-.+.+-+ .--|.....|++++..+ ..+.......+..++.+|+.
T Consensus 12 ~ys~EfK~~aV~~~~~~g~sv~evA~e~------gIs~~tl~~W~r~y~~~~~~~~~~~~~~~~~~~~~~~~~ei~~L~~ 85 (121)
T PRK09413 12 RRTTQEKIAIVQQSFEPGMTVSLVARQH------GVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQR 85 (121)
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHHHHHH
Confidence 3456777777777777654444444432 11334445556665421 11123346667788888888
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16078 77 ELDQLTATVANLKERL 92 (111)
Q Consensus 77 ~i~~L~~e~~eL~~~l 92 (111)
++.+|+.+++=|+.-+
T Consensus 86 el~~L~~E~diLKKa~ 101 (121)
T PRK09413 86 LLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887776554
No 30
>smart00340 HALZ homeobox associated leucin zipper.
Probab=85.41 E-value=3.2 Score=25.43 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+..|-+-|++-.+.|..++.+|++++.+|++
T Consensus 3 TEvdCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 3 TEVDCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999998885
No 31
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=84.92 E-value=0.79 Score=40.26 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
...+++.++ ++++|++++++|+++..+++.++.+.|.
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 456777777 8888888888888888888887776654
No 32
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=84.85 E-value=1.4 Score=35.91 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=31.6
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
.+.++-+-+.||- |+..||+.+.+.+.+|+.++..|++
T Consensus 256 ~~~~e~~L~~l~l--PTr~evd~l~k~l~eLrre~r~Lkr 293 (293)
T PF09712_consen 256 QEVVEEYLRSLNL--PTRSEVDELYKRLHELRREVRALKR 293 (293)
T ss_pred HHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566677777888 9999999999999999999887763
No 33
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=84.77 E-value=2.6 Score=27.32 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+..+..+++.+++++..++.++.+|+.++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.41 E-value=3.7 Score=33.44 Aligned_cols=38 Identities=34% Similarity=0.466 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
-+..+++.++.++.++..+++.+++++.+++.++..+.
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766666666666665543
No 35
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=84.23 E-value=2.7 Score=28.49 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
+.+|..||..|+.++..|+.++.++++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999888888888776
No 36
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.75 E-value=3 Score=32.73 Aligned_cols=32 Identities=38% Similarity=0.440 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELD---QLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~---~L~~e~~eL~~~l~ 93 (111)
++.+.|++|+++|+.++. +|+++++.|+.-|.
T Consensus 76 ~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 76 EENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444 44555555555443
No 37
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=83.62 E-value=2.1 Score=31.34 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=26.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
+.=..+.||. |+..||++|...+++|..+++.|..
T Consensus 96 V~~aL~rLgv--Ps~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 96 VARALNRLGV--PSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345567888 9999988888888888888777754
No 38
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=83.60 E-value=3.9 Score=26.09 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+-..-.+...+.+++..|.++|.+|+.-|.+|
T Consensus 26 ~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 26 KRYNKVLLDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456667778888999999999999999999887
No 39
>PRK15396 murein lipoprotein; Provisional
Probab=82.59 E-value=4.1 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
-+..++++|..+++.|..+++.|...+..++..++.
T Consensus 22 As~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 22 SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556799999999999999999999999998876654
No 40
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.46 E-value=15 Score=27.36 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=15.9
Q ss_pred HHHHHHHhcChHH----HHHHHHHHHhc
Q psy16078 15 AFRRYLEQSGVVD----AITSALVMLYS 38 (111)
Q Consensus 15 eFRkYLE~~GVlD----aLTkvLV~LYE 38 (111)
.|-+.|+++|+=. ++++++..+.+
T Consensus 6 ~~v~~Le~~Gft~~QAe~i~~~l~~~l~ 33 (177)
T PF07798_consen 6 KFVKRLEAAGFTEEQAEAIMKALREVLN 33 (177)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 5788899999743 45555555553
No 41
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=82.23 E-value=3.2 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=23.7
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~ 82 (111)
+.+.||- |+..||++|...++.|..+++.|+
T Consensus 86 ~L~~lg~--~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 86 ALNRLNI--PSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677 889998888888888877777765
No 42
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=82.09 E-value=2.4 Score=28.92 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
++.+.++++..+.+|.+++.++.+|.++....|.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888777766554
No 43
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=81.86 E-value=5.9 Score=24.11 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
+..|..++.+|..++..|..+|..|+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555544444443
No 44
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=81.79 E-value=1.2 Score=37.99 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..++.-+|+.||..||++++.|+.++..|++...+
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~ 64 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERLENEMLR 64 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35667778888888888888777777777665543
No 45
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.63 E-value=6.6 Score=32.14 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHhcChHHHHH
Q psy16078 10 EKNKEAFRRYLEQSGVVDAIT 30 (111)
Q Consensus 10 dsKrEeFRkYLE~~GVlDaLT 30 (111)
+-=|++.++-|-++|+ .+|+
T Consensus 106 elvrkEl~nAlvRAGL-ktL~ 125 (290)
T COG4026 106 ELVRKELKNALVRAGL-KTLQ 125 (290)
T ss_pred HHHHHHHHHHHHHHHH-HHHh
Confidence 4456777777777774 4454
No 46
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=81.48 E-value=3.1 Score=35.64 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 70 DLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
|+..||+++..|++||.+|+.+++++|
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666554
No 47
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=81.06 E-value=5.7 Score=24.81 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..++.|...+..|..++..|..++..|...+..+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888887776553
No 48
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=80.87 E-value=2.8 Score=27.47 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy16078 67 VLQDLDEAKAELDQ 80 (111)
Q Consensus 67 Lk~E~~~lk~~i~~ 80 (111)
|+.||..|+++...
T Consensus 19 L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 19 LKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 49
>KOG3119|consensus
Probab=80.32 E-value=6.6 Score=31.52 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
+.-+..|.+||+.|+.+|++|++++..++.-+.+|....
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~ 259 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPG 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 456888999999999999999999999998888876654
No 50
>KOG1333|consensus
Probab=80.28 E-value=2.6 Score=33.83 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCh---HHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 13 KEAFRRYLEQSGV---VDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 13 rEeFRkYLE~~GV---lDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
-+-||+|..++|+ +=+|++.|-.+|.+-+.| -.+-|...+-. ...+..+|+-+++++-.|..++..++
T Consensus 140 tppf~~~F~ktw~e~~~~sl~Nflst~~qc~p~p-vi~~~~~e~ar--------~~~~~e~n~~lr~~~~~lq~e~~~~t 210 (241)
T KOG1333|consen 140 TPPFRKYFDKTWIEIYYVSLHNFLSTLFQCMPVP-VILNFDAECQR--------TNQVQEENEVLRQKLFALQAEIHRLK 210 (241)
T ss_pred CccHHHHHHhhhhHhhhhhHHhHHHHHHHcCCcc-eeehHHHHHhc--------ccccchhhHHHHHHHHHHHHHHHHhh
Confidence 4579999999996 456788888888665554 22222222111 12233445555555555555555555
Q ss_pred HHhcccc
Q psy16078 90 ERLSKYE 96 (111)
Q Consensus 90 ~~l~~~e 96 (111)
.++++.+
T Consensus 211 ~~~~~~~ 217 (241)
T KOG1333|consen 211 KEEQQPE 217 (241)
T ss_pred hcccCch
Confidence 5554443
No 51
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=80.22 E-value=5.3 Score=27.08 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+-..|+..+.+-+.+|+.|..-+..|+++|.+|-
T Consensus 6 qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt 39 (76)
T PF11544_consen 6 QNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYT 39 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777777763
No 52
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=80.16 E-value=4.9 Score=32.41 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQ-----------LTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~-----------L~~e~~eL~~~l~ 93 (111)
.++..|++||++|++++.. |++||+.|++-|.
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666677776666544 4555666665443
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.80 E-value=4.1 Score=31.74 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+..|+.+|++|++++..++.++..|++++..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666666666666666665555543
No 54
>PHA00728 hypothetical protein
Probab=79.34 E-value=2.8 Score=31.28 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
..++++|++||++|+.++++|+.-+.
T Consensus 4 ~teveql~keneelkkkla~leal~n 29 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEALMN 29 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 35788888888888888887776655
No 55
>smart00338 BRLZ basic region leucin zipper.
Probab=79.09 E-value=5.8 Score=24.78 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.-+..|..++..|..++..|..++..|...+..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888888887777776654
No 56
>KOG3366|consensus
Probab=79.00 E-value=21 Score=27.56 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=47.0
Q ss_pred CCCCChhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 5 PETPNEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 5 ~~~~~dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
|.++..--=.-||+=|..+||||.+-+-.=+|- .=|.++-.|+...=.. ....+..++.--..-.+++.+|+++
T Consensus 47 pe~~p~IDwa~Yrk~va~a~~VD~~ek~y~slk---~v~~~~~ky~~~vda~---~k~~~~~~ke~~~~s~~~iq~l~k~ 120 (172)
T KOG3366|consen 47 PEQPPTIDWAYYRKVVANAGLVDKYEKKYDSLK---PVPVDEDKYLKEVDAE---EKAAVKEIKEYESLSKKRIQELEKE 120 (172)
T ss_pred ccCCCccCHHHHHHHhhhhHHHHHHHHHHHhcc---ccCCCHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444678999999999999998887772 2566666666543111 1222333444444445566666666
Q ss_pred HHHHH
Q psy16078 85 VANLK 89 (111)
Q Consensus 85 ~~eL~ 89 (111)
++.++
T Consensus 121 le~v~ 125 (172)
T KOG3366|consen 121 LEKVK 125 (172)
T ss_pred HHHHH
Confidence 66554
No 57
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.42 E-value=6 Score=27.02 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
+.|.-|+-|+++|+.++..|.+++..
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665555555444
No 58
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=78.37 E-value=2.5 Score=33.14 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
..++..+++||.+|++++.+|+.++.++
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668888999999999999888888744
No 59
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=78.22 E-value=7.5 Score=25.06 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
.-++.|-..+.+-+.+|..|++++..|..+|.....
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457888888999999999999999999999998873
No 60
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.37 E-value=5.9 Score=25.29 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.++.++.+|++++..++.+++.+.
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555543
No 61
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=77.13 E-value=4.5 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 72 DEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 72 ~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+.|+++++.|+.++..|++.+.+|.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777776666654
No 62
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=77.12 E-value=7.5 Score=26.26 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q psy16078 13 KEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKA 76 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~ 76 (111)
-+-|.+.+.-..==++++.|+..|++ |-..-++++-.++|. +..+|++.++.+.-+...
T Consensus 10 ddvYe~L~kmK~g~~SFSdvI~~l~~---kKr~~levl~~~~g~--~s~eEvek~~~e~~~aek 68 (74)
T COG1753 10 DDVYEKLVKMKRGKESFSDVIRELIE---KKRGNLEVLMRAFGT--LSEEEVEKIKKEEKEAEK 68 (74)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHH---HhhhhHHHHHHHhCC--CcHHHHHHHHHHHHHHHH
Confidence 45566666555345789999999997 667889999999999 889999998887655543
No 63
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=77.02 E-value=11 Score=24.15 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..++.|-.++..|..++..|...+..++..+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888776654
No 64
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=76.86 E-value=7.8 Score=26.71 Aligned_cols=35 Identities=9% Similarity=0.228 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+..++++|..+++.|+.++..+...+..++....
T Consensus 21 As~~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~ 55 (85)
T PRK09973 21 VNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIY 55 (85)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55579999999999999999999999999988764
No 65
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.78 E-value=7.9 Score=26.91 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
|+..++..|+.++.+++-++..|..++..+..++.
T Consensus 62 Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 62 PTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88889999999999998888888888888776654
No 66
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=76.64 E-value=22 Score=24.62 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++=|++.+..........+.|.+..+++.+++++|+.....|...+.
T Consensus 59 L~eI~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~L~~~~~ 105 (120)
T cd04781 59 LDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMRELLRHVAQ 105 (120)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555443222344577888888889999988888888887664
No 67
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=76.59 E-value=5.1 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
...++..+++++++++.++.+|+.++..|.
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357788888888888888888888888776
No 68
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=76.54 E-value=17 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
.+.|....+++.+++.+|++....|...+..+....
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (133)
T cd04787 81 RRLIEQRLAETERRIKELLKLRDRMQQAVSQWQQMP 116 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467788889999999999988888888888775543
No 69
>PRK04406 hypothetical protein; Provisional
Probab=76.05 E-value=13 Score=24.68 Aligned_cols=37 Identities=5% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.-|+.|-.-+.+-+++|..|++++..|..+|...+++
T Consensus 25 ~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 25 QTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4577888888888889999999999999999877653
No 70
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=76.03 E-value=7.5 Score=23.66 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.-+....+|..++..|..++..|..++..++
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777888888888888877776653
No 71
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=75.63 E-value=15 Score=27.07 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=51.0
Q ss_pred cChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCC-CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 23 SGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDER-PEVA-EYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 23 ~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~-p~~~-e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
...+..+-.-|..+..+-++=.....=++...|... |+.- ||+..+.++.+++..|..|+..++.+..++.+
T Consensus 104 ~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~~ 177 (177)
T PF13870_consen 104 EEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIKQ 177 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334444444555555555554555555777777754 6654 89999999999999999999999999887753
No 72
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=75.59 E-value=9.4 Score=25.64 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
....+.+|+.+++.++.++..+..++.-+++++.-+
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999888887643
No 73
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=75.39 E-value=5.2 Score=30.54 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
++=+-.+|-...........+..|+..|+.++..|+.+++.|..++..+..
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555565544444556677778888888888888888888777776654
No 74
>KOG3856|consensus
Probab=75.35 E-value=7.2 Score=28.98 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..-++++++|+.+|.++-.+|...++.|..++=..|.+
T Consensus 9 ~~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~Egs 46 (135)
T KOG3856|consen 9 LKSYEDTKAELAELIKKRQELEETLANLERQIYAFEGS 46 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45689999999999999999999999999999776654
No 75
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.92 E-value=15 Score=26.31 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..+|++..++=+...+.+++.|..++.+|.++|..-.|.
T Consensus 57 sREEFdvq~qvl~rtR~kl~~Leari~~LEarl~~~~~~ 95 (103)
T COG2960 57 SREEFDVQRQVLLRTREKLAALEARIEELEARLASAAPA 95 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 468999999999999999999999999999999844333
No 76
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.67 E-value=7.7 Score=28.95 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..++++|+.+++..+.+++.|+++.+.+.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555544
No 77
>COG1422 Predicted membrane protein [Function unknown]
Probab=73.90 E-value=8.8 Score=30.30 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
+.+++..+-. ++.++++++..+++|++..+++++.+
T Consensus 61 ~~i~~~~liD----~ekm~~~qk~m~efq~e~~eA~~~~d 96 (201)
T COG1422 61 ITILQKLLID----QEKMKELQKMMKEFQKEFREAQESGD 96 (201)
T ss_pred HHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666655 89999999999999999999888544
No 78
>PHA02557 22 prohead core protein; Provisional
Probab=73.55 E-value=9.4 Score=31.41 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=37.0
Q ss_pred HHHHhhCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 49 FIRRNLGDERPEV--AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 49 fir~~Lg~~~p~~--~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
|+-+++.. |+. ..|+.|..+++++.++++.|..++..|+.++..+.
T Consensus 128 F~Ehnv~v--pee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~ 175 (271)
T PHA02557 128 FVEHNVVV--PEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVK 175 (271)
T ss_pred HHHhCcCC--cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666 654 47999999999999999999999999988876554
No 79
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=73.54 E-value=2 Score=29.64 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
++.|..++..|..++..|+.++.+|+.++..|..
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5666677777777777777777777777766643
No 80
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=73.12 E-value=34 Score=27.61 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.+.|.+|+....++...|+.|+.++++-+++|+.+...
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~ 216 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRS 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58899999999999999999999999999999887543
No 81
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=72.89 E-value=9.5 Score=32.08 Aligned_cols=29 Identities=7% Similarity=-0.064 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
|....+-.|+.||++|++++.+|+.++..
T Consensus 54 p~~~~y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 54 GPSSHALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888888665554
No 82
>KOG4196|consensus
Probab=72.74 E-value=6.6 Score=29.25 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..|..++..|.++++.|..++..++.++..|.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444443
No 83
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=72.67 E-value=8.9 Score=26.46 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
=.+..++++++.|+.+++.|+.+..-...+++.++.
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777766666666554
No 84
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=72.64 E-value=6 Score=28.69 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
....+..+.+.+..++..|+..+..|+.-...++..
T Consensus 75 ~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~ 110 (134)
T cd04779 75 EQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRA 110 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777666666555443
No 85
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=72.09 E-value=11 Score=26.47 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++.|....+.+.+++.+|+..+..|...+..+
T Consensus 82 ~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 82 LEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776666666544
No 86
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.07 E-value=19 Score=23.58 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.-|+.|-.-+.+.+++|..|++++..|..+|...++.
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4577888888888889999999999999999887654
No 87
>PRK00846 hypothetical protein; Provisional
Probab=71.85 E-value=17 Score=24.46 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
.-|+.|-..+...+..|..|+.++.-|..+|+..+++.
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45788888888889999999999999999999887553
No 88
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=71.55 E-value=15 Score=32.53 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..+++.+..++.++.+++.+|++++++++.++..++|=
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34678888888899999999999999999888888874
No 89
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=71.24 E-value=7.7 Score=22.05 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHhh
Q psy16078 40 EEKPEDPLDFIRRNL 54 (111)
Q Consensus 40 ~ekP~dalefir~~L 54 (111)
..+|.|+++|..+||
T Consensus 16 ~~qP~d~~~f~~~yF 30 (38)
T smart00394 16 RAQPSDLVQFAADYF 30 (38)
T ss_pred HHCCCcHHHHHHHHH
Confidence 568999999999998
No 90
>PF15456 Uds1: Up-regulated During Septation
Probab=71.05 E-value=13 Score=26.98 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
=..+||+.|++|+.-|..+++.+++.+. |..++
T Consensus 19 Ls~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~ 51 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSRLEYLRRKLA-LESKI 51 (124)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3579999999999999999999988877 54444
No 91
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=71.02 E-value=14 Score=23.53 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++..+...++.++.+++.+...++.+...++
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665554
No 92
>KOG3156|consensus
Probab=70.99 E-value=7.9 Score=30.95 Aligned_cols=68 Identities=26% Similarity=0.414 Sum_probs=41.2
Q ss_pred HHHHHHHhcCh----HHHHHHHHHHHhcCCCCCCC--------------------HHHHHHHhhCCCCCCHHHHHHHHHH
Q psy16078 15 AFRRYLEQSGV----VDAITSALVMLYSIEEKPED--------------------PLDFIRRNLGDERPEVAEYEAVLQD 70 (111)
Q Consensus 15 eFRkYLE~~GV----lDaLTkvLV~LYEe~ekP~d--------------------alefir~~Lg~~~p~~~e~e~Lk~E 70 (111)
.+-+=||.+|+ -.+||.++-.++ .+-++. .+.-||+.|-. -+..++.+|+.|
T Consensus 49 alvr~LE~~Gf~~kQAETIt~aiT~v~--ndsl~~vsk~~vtkaqq~~v~~QQ~~~f~kiRsel~S--~e~sEF~~lr~e 124 (220)
T KOG3156|consen 49 ALVRSLEAAGFDSKQAETITSAITTVL--NDSLETVSKELVTKAQQEKVSYQQKVDFAKIRSELVS--IERSEFANLRAE 124 (220)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34556788886 346667766666 222322 22235555555 556777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16078 71 LDEAKAELDQLTATVA 86 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~ 86 (111)
++.|+..++.++..+.
T Consensus 125 ~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 125 NEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777766554
No 93
>KOG2577|consensus
Probab=70.91 E-value=6.8 Score=33.31 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=51.2
Q ss_pred HHHHH--HHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy16078 29 ITSAL--VMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVES 100 (111)
Q Consensus 29 LTkvL--V~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~ 100 (111)
||+|| ++|-|. |=.|-+.|+=-.+++..-..+....|++|+++|+++=..|.+.+..++..|.-+..+.+
T Consensus 111 ITNVLEGI~LIeK--ksKN~IqW~G~~~~~~~~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~ 182 (354)
T KOG2577|consen 111 ITNVLEGIGLIEK--KSKNNIQWIGGDFNSTGGVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVE 182 (354)
T ss_pred hhhhhhcccceee--ccccceeeecCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 56666 344444 44566666665565533456888999999999999999999999999999987765543
No 94
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=70.40 E-value=11 Score=28.80 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
-|.-....++.||+++..|+.++.+|-
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555543
No 95
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=69.44 E-value=7.2 Score=26.40 Aligned_cols=84 Identities=20% Similarity=0.340 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHH-------HhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIR-------RNLGDERPEVAEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir-------~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
..+.|+.=|.+-|.......-++.||++--.=-.-++-++ +.+|......++.+.|+.+...++.++..|+.+
T Consensus 10 n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 10 NPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776555566666677655432222222222 123332222367788888888888888888888
Q ss_pred HHHHHHHhccc
Q psy16078 85 VANLKERLSKY 95 (111)
Q Consensus 85 ~~eL~~~l~~~ 95 (111)
+.++..++...
T Consensus 90 ~~~~e~~l~~~ 100 (108)
T PF02403_consen 90 LKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887643
No 96
>PF15058 Speriolin_N: Speriolin N terminus
Probab=69.06 E-value=9.7 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
...++.|..||++||+.+. |-+++.+|+.-|
T Consensus 11 rhqierLv~ENeeLKKlVr-LirEN~eLksaL 41 (200)
T PF15058_consen 11 RHQIERLVRENEELKKLVR-LIRENHELKSAL 41 (200)
T ss_pred HHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHH
Confidence 3678899999999998875 566677777654
No 97
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=68.77 E-value=33 Score=23.38 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.-.+.|....+.+.+++++|+..+..|...+..+
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (113)
T cd01109 79 ERLELLEEHREELEEQIAELQETLAYLDYKIDYY 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466778888888888888888888877776544
No 98
>PRK00736 hypothetical protein; Provisional
Probab=68.61 E-value=25 Score=22.75 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.-|+.|-..+..-+++|..|++++..|..++...++.
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4577888888888889999999999999999877653
No 99
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=68.38 E-value=16 Score=25.36 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 26 VDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 26 lDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
|+.+.+=|-.+| ..|-+.=+..|++.--. .=...++.|..++..+..+++.|+.+++.-
T Consensus 17 ve~vA~eLh~~Y--ssKHE~KV~~LKksYe~--rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 17 VEKVARELHALY--SSKHETKVKALKKSYEA--RWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777 33444445555543322 112445666666666666666666555433
No 100
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.91 E-value=15 Score=25.03 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQ 80 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~ 80 (111)
-+|+.||.+|..|.++++.
T Consensus 25 mEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 25 MEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665554
No 101
>PRK14156 heat shock protein GrpE; Provisional
Probab=67.85 E-value=15 Score=28.13 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+...+++.|+.++++++.++.++..+.++++.+..+
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~r 66 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANE 66 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999999887754
No 102
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=67.73 E-value=31 Score=24.49 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=41.9
Q ss_pred hcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 22 QSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 22 ~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+--.+.....||+.|-.++.-----..|.-..|+- |+..-++.+..|+..++.+..-...+-+.+-.+|+++
T Consensus 14 kiatLNKmAEvLinlks~~~esrklaky~~sKLNl--tesitle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~f 85 (99)
T PF11083_consen 14 KIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNL--TESITLEQVEKEIRELQNQLGLYLDEYEKLVRRLEKF 85 (99)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667779999954333222344555556666 6666666666666666666555555555555555444
No 103
>PRK02119 hypothetical protein; Provisional
Probab=67.51 E-value=27 Score=22.94 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.-++.|-.-+.+-++.|..|++++..|..+|....+.
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4477777888888888899999999898888877644
No 104
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.42 E-value=7.7 Score=26.32 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy16078 65 EAVLQD 70 (111)
Q Consensus 65 e~Lk~E 70 (111)
+.|+.+
T Consensus 28 eELKEk 33 (79)
T COG3074 28 EELKEK 33 (79)
T ss_pred HHHHHH
Confidence 333333
No 105
>KOG1962|consensus
Probab=67.32 E-value=10 Score=30.16 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.++++|++..+++..++++|.+++..|+.+++
T Consensus 179 ~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 179 KKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666666665553
No 106
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=67.29 E-value=16 Score=27.11 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=29.7
Q ss_pred hcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 37 YSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 37 YEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
|...+.|+.|+..||+-|-. .=..=.++|..|+.+|.+-+..|+.=++
T Consensus 75 yQt~epseEPik~~r~WLke--nLhvflEkLE~EvreLEQlV~DLE~WLD 122 (135)
T PF15466_consen 75 YQTKEPSEEPIKAIRNWLKE--NLHVFLEKLEKEVRELEQLVRDLEEWLD 122 (135)
T ss_pred cccCCCccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888887765 2234456666666665555555544433
No 107
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.07 E-value=5.2 Score=35.14 Aligned_cols=7 Identities=43% Similarity=0.563 Sum_probs=3.4
Q ss_pred HhhCCCC
Q psy16078 52 RNLGDER 58 (111)
Q Consensus 52 ~~Lg~~~ 58 (111)
+-||..+
T Consensus 48 kalGieg 54 (472)
T TIGR03752 48 KALGIEG 54 (472)
T ss_pred HhcCCCC
Confidence 4455543
No 108
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=66.80 E-value=12 Score=26.49 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
...++..+..+.+.++++++.|.+++..|++++..+...
T Consensus 48 ~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 48 GAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 356666666666666666666666666666666665543
No 109
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=66.78 E-value=24 Score=27.29 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=33.4
Q ss_pred HHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 48 DFIRRNLGDE-RPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 48 efir~~Lg~~-~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++|..+++.. ++-......|..++..+..++..++.++.....++.
T Consensus 178 ~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~ 224 (239)
T PF07195_consen 178 DYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLR 224 (239)
T ss_pred HHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555655 455677888888888888888888888887776663
No 110
>PHA03155 hypothetical protein; Provisional
Probab=66.44 E-value=9.5 Score=27.73 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
|....+|.|.+|++.|+-++..|++++
T Consensus 5 ~~~~tvEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 5 RACADVEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777766666666655555444
No 111
>PRK11239 hypothetical protein; Provisional
Probab=66.22 E-value=13 Score=29.69 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.++.|..+++.|++++.+|+.++++|.+++
T Consensus 184 ~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 184 VDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888888888888888888777765
No 112
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=66.22 E-value=17 Score=25.14 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..+.+|+.++..|.+++..|+.+|..
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999999888754
No 113
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=66.06 E-value=16 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
--..++.+++++++.|.++...|+++++.|+..
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345778899999999999999999999998876
No 114
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=65.99 E-value=25 Score=23.04 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+..+..|.+.|+.+++.-..+++.+-++|..+
T Consensus 30 ~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 30 EKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444444444444444444444444433
No 115
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=65.57 E-value=14 Score=26.20 Aligned_cols=43 Identities=12% Similarity=0.306 Sum_probs=18.6
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
++|++|+.+.+..- ...++.|..++..++.+++.+...+.++.
T Consensus 93 ~eA~~~l~~~~~~l---~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 93 DEAIEILDKRKEEL---EKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444331 23344444444444444444444444443
No 116
>KOG0709|consensus
Probab=65.46 E-value=3.2 Score=36.46 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
|.+-..+|++|++++.+|+..|..|-++|.+++.-
T Consensus 281 v~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 281 VSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred hhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34445689999999999999999999999998763
No 117
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=65.45 E-value=8.1 Score=22.37 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHhh
Q psy16078 25 VVDAITSALVMLYSIEEKPEDPLDFIRRNL 54 (111)
Q Consensus 25 VlDaLTkvLV~LYEe~ekP~dalefir~~L 54 (111)
+|..+++.++ -.+|.|+++|..+||
T Consensus 6 lL~~~~~~vl-----~~qP~Di~~F~a~yF 30 (38)
T PF02197_consen 6 LLKEFTREVL-----REQPDDILQFAADYF 30 (38)
T ss_dssp HHHHHHHHHH-----HH--S-HHHHHHHHH
T ss_pred HHHHHHHHHH-----HHCCCcHHHHHHHHH
Confidence 4444544333 468999999999998
No 118
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=65.31 E-value=9.6 Score=31.90 Aligned_cols=30 Identities=40% Similarity=0.571 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 68 LQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+.|++++.+++.+|++++..|+.+|.+++.
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578999999999999999999999988764
No 119
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=65.29 E-value=17 Score=23.97 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
-+++++.|..+|..|.+++..|.++++.+
T Consensus 40 t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 40 TSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666666666666666665543
No 120
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=65.23 E-value=13 Score=31.50 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCh-HHHHHHHHHHHhcCCCCCCCHHHHHHHh-------hCCCCCCHHH-HHHHHHHHHHHHHHHHHHH
Q psy16078 12 NKEAFRRYLEQSGV-VDAITSALVMLYSIEEKPEDPLDFIRRN-------LGDERPEVAE-YEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 12 KrEeFRkYLE~~GV-lDaLTkvLV~LYEe~ekP~dalefir~~-------Lg~~~p~~~e-~e~Lk~E~~~lk~~i~~L~ 82 (111)
..+.+|+=|.+.|+ ++.+..-++.|+++--+=..-++-++.. +|.......+ .+.|+.+..++++++.+|+
T Consensus 10 n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 89 (418)
T TIGR00414 10 NPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS 89 (418)
T ss_pred CHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 35678888888885 2224566777776644434444443332 2221111233 6788888888888888888
Q ss_pred HHHHHHHHHhccc
Q psy16078 83 ATVANLKERLSKY 95 (111)
Q Consensus 83 ~e~~eL~~~l~~~ 95 (111)
+++.++..++...
T Consensus 90 ~~~~~~~~~~~~~ 102 (418)
T TIGR00414 90 AALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776543
No 121
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=65.19 E-value=6.6 Score=31.68 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+-.--..+.++++++++|++++.+|++++..
T Consensus 60 ~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 60 GISENLKDVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456677888888888888888665554
No 122
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=65.18 E-value=5.7 Score=25.77 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hccccccc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKER---LSKYEVVE 99 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~---l~~~e~~~ 99 (111)
+.+.|++-||.+|.+|..++..|..+ |++.-+++
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe 47 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQNASPE 47 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34678889999999999998888754 44444444
No 123
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.16 E-value=19 Score=28.02 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q psy16078 81 LTATVANLKERL 92 (111)
Q Consensus 81 L~~e~~eL~~~l 92 (111)
|+.++.+|+.++
T Consensus 137 L~~~n~~L~~~l 148 (206)
T PRK10884 137 LKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 124
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=64.83 E-value=8.8 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
...-.++.++..++++++.+++++++|
T Consensus 41 ~~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 41 PSRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777777777777777776654
No 125
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=64.77 E-value=12 Score=27.70 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
+++.|+.++.+....|..|+.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333344443333333333333
No 126
>PRK04325 hypothetical protein; Provisional
Probab=64.57 E-value=33 Score=22.54 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.-|+.|-.-+.+-+++|..|++++..|..+|...++.
T Consensus 23 ~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 59 (74)
T PRK04325 23 DLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANPD 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4577788888888889999999999999999887644
No 127
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=64.53 E-value=23 Score=24.66 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=43.5
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHH----------HHHHHHHHH
Q psy16078 14 EAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEA----------KAELDQLTA 83 (111)
Q Consensus 14 EeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~l----------k~~i~~L~~ 83 (111)
.+|-.|.+=..-|+++++-|..|-.+ .+.+..+.++...|..+..|...+ +.+..-|..
T Consensus 19 ~~y~EYk~L~~~v~~v~~~f~~L~~~-----------l~~l~~~s~ey~~i~~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~ 87 (101)
T PF07303_consen 19 DDYDEYKELHAEVDAVSRRFQELDSE-----------LKRLPPGSQEYKRIAQILQEYNKKKKRDPNYQEKKKRCEYLHN 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHS-TTSHHHHHHH---HHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCCCCCcHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 46778999999999999999998532 222322334444444444555555 456666666
Q ss_pred HHHHHHHHhccc
Q psy16078 84 TVANLKERLSKY 95 (111)
Q Consensus 84 e~~eL~~~l~~~ 95 (111)
.+..++..+..|
T Consensus 88 KL~HIK~~I~~y 99 (101)
T PF07303_consen 88 KLSHIKQLIQDY 99 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 666666666554
No 128
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.39 E-value=14 Score=27.12 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 73 EAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 73 ~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+|+..|..|++++..|..+|..+..
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666666655
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=64.06 E-value=14 Score=29.45 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
..++.|+.|+.+|+-.|+++.-++++++.
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34566666666666666666666665554
No 130
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=63.95 E-value=2.8 Score=28.94 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.+++.|..++++|+.++..|..++..++..
T Consensus 32 ~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~ 61 (131)
T PF05103_consen 32 EELERLQRENAELKEEIEELQAQLEELREE 61 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 455666666666666666666555555433
No 131
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.87 E-value=17 Score=25.86 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
=..|..++.+++.+++.|..+|.-|-.+|+
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566666666666666655555554
No 132
>KOG4571|consensus
Probab=63.79 E-value=13 Score=30.83 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+.+.|.+.|++||.+..+|+++|..|+.=+
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666665433
No 133
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=63.54 E-value=27 Score=27.55 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHhcC-CCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 24 GVVDAITSALVMLYSI-EEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 24 GVlDaLTkvLV~LYEe-~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
|+++.|.++|.+-..+ -++-+||-.-|.+++.. ...++.++++.++++...-..|+.++.++..+.++|+.
T Consensus 2 ~i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird---~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 2 GIFSRLKDLVKANINELLDKAEDPEKMLEQAIRD---MESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred chHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887765533 46667888888888776 25788899999999999889999999998888888765
No 134
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=63.53 E-value=16 Score=27.19 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=12.6
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQ---DLDEAKAELDQLTATVA 86 (111)
Q Consensus 63 e~e~Lk~---E~~~lk~~i~~L~~e~~ 86 (111)
.++.|+. .+++|+.+|+.|+..+.
T Consensus 42 ~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 42 QIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3444444 55555555555555555
No 135
>PRK14147 heat shock protein GrpE; Provisional
Probab=63.47 E-value=20 Score=27.15 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..+++.|+.++++++.++.++..+.++.+.+.++
T Consensus 24 ~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 24 KAEVESLRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888877654
No 136
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=63.45 E-value=9.6 Score=26.17 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 72 DEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 72 ~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
-+|-.+++.|++++..|+++|..|.
T Consensus 74 l~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 74 LTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666776654
No 137
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.29 E-value=16 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+++.|-.+++++..++..+++++.+++..+.
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik 83 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIK 83 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333
No 138
>PRK14159 heat shock protein GrpE; Provisional
Probab=63.27 E-value=21 Score=27.33 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
-...+++.|+.++++++.++.++..+.+.++.+..+
T Consensus 27 ~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~r 62 (176)
T PRK14159 27 IEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEK 62 (176)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999887754
No 139
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=63.17 E-value=18 Score=24.44 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
++.|..++.+|++++..+..++.++.+.+
T Consensus 2 ~~~l~~~~~~L~~~~~~l~~~i~~~~~~l 30 (83)
T PF07061_consen 2 IESLEAEIQELKEQIEQLEKEISELEAEL 30 (83)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788889999999999999998888876
No 140
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=63.06 E-value=39 Score=22.64 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=23.7
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+=|+..+.. ...+-.+.|.....+|.+++.+|+.....|..
T Consensus 61 ~~i~~~~~~--~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 61 KEIKELLKD--PSEDLLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred HHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555544 22444566666666777777666666665544
No 141
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=62.85 E-value=16 Score=23.90 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16078 68 LQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~e 87 (111)
..++.+|+.+++.|.+++++
T Consensus 46 ~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 46 YEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.53 E-value=17 Score=29.74 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++..|++|..++.+++..|+++..++.+++..+
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555544444444443
No 143
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=62.32 E-value=33 Score=21.68 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
......++.+...+|+.|+.++..++.+.....
T Consensus 35 ~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~~~~ 67 (70)
T PF02185_consen 35 LSEAESQLRESNQKIELLREQLEKLQQRSQNSQ 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 556667777788888888888777776655443
No 144
>PRK11546 zraP zinc resistance protein; Provisional
Probab=62.31 E-value=28 Score=25.96 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=25.9
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
++.-+....|+..-|.+|.+|+.+|+.++.++.-
T Consensus 77 LnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 77 YNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566668888899999999999998776654
No 145
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=62.27 E-value=13 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 71 LDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
+.++++++.+|+.++..|.+.|++...+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567788888888888777777665443
No 146
>PRK14161 heat shock protein GrpE; Provisional
Probab=62.00 E-value=22 Score=27.18 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..+++.|+.++++++.++.++..+.+.++.+.++
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~k 58 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEK 58 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999988877654
No 147
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=61.96 E-value=24 Score=22.90 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=34.2
Q ss_pred HHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q psy16078 18 RYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERP-EVAEYEAVLQDL 71 (111)
Q Consensus 18 kYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p-~~~e~e~Lk~E~ 71 (111)
.||+=.|.++..++.+..+-.. | -.+-||++||...+ +.++-++++.++
T Consensus 24 ~yL~I~~L~~~~~~~iA~~i~g--k---s~eeir~~fgi~~d~t~eee~~i~~e~ 73 (78)
T PF01466_consen 24 NYLDIKGLLDLCCKYIANMIKG--K---SPEEIRKYFGIENDLTPEEEEEIRKEN 73 (78)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTT--S----HHHHHHHHT---TSSHHHHHHHHHHC
T ss_pred HHHcchHHHHHHHHHHHHHhcC--C---CHHHHHHHcCCCCCCCHHHHHHHHHHc
Confidence 6899999999999999888763 2 47889999998543 345556666664
No 148
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.92 E-value=26 Score=23.83 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+.+..++..+..++..+.+++.+++.+|.
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 149
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=61.88 E-value=23 Score=27.61 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHH-hcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q psy16078 25 VVDAITSALVML-YSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAE 77 (111)
Q Consensus 25 VlDaLTkvLV~L-YEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~ 77 (111)
..+.|.++|..+ |=.+++|...+.-+|+.|+...++..|+..|+-=+..+..+
T Consensus 178 l~~~l~~~l~~~~~~~~~~~~~~~~~lr~l~~R~~l~~~E~~~l~g~~~~~~~~ 231 (233)
T TIGR00050 178 LLEHLEEILLSLGFIPEHKIRRVMRKFRRLYGRAGLEKRELNILNGILRAIEKR 231 (233)
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 455666777665 44678888899999999999999999988888777766544
No 150
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=61.80 E-value=20 Score=24.61 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
++.|+++....+.+++..+.++..|+.+...++
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888877777664
No 151
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=61.74 E-value=29 Score=19.97 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
.|..+.+.|+.+.+.|+..++.|+
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555444
No 152
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=61.66 E-value=32 Score=22.53 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+-++.|....+.+..++..|+.....+..++..+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555544433
No 153
>PRK14155 heat shock protein GrpE; Provisional
Probab=61.62 E-value=22 Score=27.92 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..+++.|+.++++++.++.++..+.+.++.+.++
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~k 52 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKRRAER 52 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888877654
No 154
>PRK00295 hypothetical protein; Provisional
Probab=61.24 E-value=38 Score=21.86 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.-|+.|-..+.+-+++|..|++++..|..++...+
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44677777888888888888888888888887765
No 155
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=60.97 E-value=6.7 Score=34.57 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+-.+.+.+| +|++|++++++|++++.
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 333444444 66666666666666655
No 156
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=60.47 E-value=13 Score=26.74 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy16078 72 DEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 72 ~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+.++.+|.+|++++..|++++.
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 86 DELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555556655543
No 157
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=60.47 E-value=32 Score=21.27 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
|++|++.+..|+.++..|+......+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999888776553
No 158
>PRK14153 heat shock protein GrpE; Provisional
Probab=60.43 E-value=23 Score=27.56 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..+++.|+.++++++.++.++..+.+.++.+.++
T Consensus 39 ~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 39 DSETEKCREEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777777777777766643
No 159
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.37 E-value=16 Score=29.84 Aligned_cols=29 Identities=31% Similarity=0.627 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
++.++.+++++++++..|+++|++++.++
T Consensus 68 ~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 68 IDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 160
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=60.03 E-value=45 Score=28.14 Aligned_cols=71 Identities=23% Similarity=0.270 Sum_probs=52.5
Q ss_pred hcChHHHHHHHHHHHhcCCCC--CCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 22 QSGVVDAITSALVMLYSIEEK--PEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 22 ~~GVlDaLTkvLV~LYEe~ek--P~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
+.-.||+|..=+-.+|.+.=+ |.|. +.... ++..|+..|..+++++.+++..|++.+.+|.++.. |.|++
T Consensus 133 D~~LiD~IaE~~~QvFs~~ckLFP~DV-----qi~S~--~~lPD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~-y~pd~ 204 (325)
T PF06694_consen 133 DIQLIDAIAEKQQQVFSEECKLFPPDV-----QIQSI--YPLPDVSELEKKASELSKQLQSLQQQVAELASKHP-YNPDE 204 (325)
T ss_pred HHHHHHHHHHhHHHHHhhhcCcCCHHH-----hhccC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcch
Confidence 345677777766666655433 5552 22233 56788999999999999999999999999999987 77765
Q ss_pred C
Q psy16078 100 S 100 (111)
Q Consensus 100 ~ 100 (111)
+
T Consensus 205 ~ 205 (325)
T PF06694_consen 205 E 205 (325)
T ss_pred h
Confidence 4
No 161
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=59.82 E-value=13 Score=30.06 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccccc
Q psy16078 61 VAEYEAVLQDLDEAK---AELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk---~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..+.+.|+.++.+++ .++..|++++..|+.-|--....
T Consensus 72 ~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~ 112 (284)
T COG1792 72 ALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESS 112 (284)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 344555555554443 36667777777777776544433
No 162
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=59.80 E-value=24 Score=25.58 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
-.++..||+-+..|-.++..|+-++..|+.+|-.
T Consensus 21 ~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 21 LAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4778888999999999999999999999999876
No 163
>PRK14149 heat shock protein GrpE; Provisional
Probab=59.67 E-value=25 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+.+.++.|+.++++++.++.++..+.+.++.+.++
T Consensus 40 ~~~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~k 75 (191)
T PRK14149 40 KEGEIKEDFELKYKEMHEKYLRVHADFENVKKRLER 75 (191)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999999999999999887754
No 164
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=59.54 E-value=8.2 Score=18.61 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=8.1
Q ss_pred ChHHHHHHHHH
Q psy16078 24 GVVDAITSALV 34 (111)
Q Consensus 24 GVlDaLTkvLV 34 (111)
||+|+|-.+|-
T Consensus 1 gvmdsllealq 11 (15)
T PF06345_consen 1 GVMDSLLEALQ 11 (15)
T ss_dssp -HHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 79999888774
No 165
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=58.98 E-value=17 Score=19.44 Aligned_cols=17 Identities=6% Similarity=0.395 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16078 70 DLDEAKAELDQLTATVA 86 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~ 86 (111)
|++.++.+|..|++++.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555555555555554
No 166
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.71 E-value=28 Score=24.56 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
...+..|..||..|+.++..|...+.++..
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677777888888888888888777665
No 167
>PRK14157 heat shock protein GrpE; Provisional
Probab=58.34 E-value=24 Score=28.17 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+++.|+.++++++.++.++..+.+.++.+.++
T Consensus 84 ~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~r 116 (227)
T PRK14157 84 TPLGQAKKEAAEYLEALQRERAEFINYRNRTQK 116 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999887754
No 168
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=58.00 E-value=17 Score=29.59 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+++.|+.++++|+.++++|+.+++....=+...
T Consensus 38 ~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 38 EDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777776655444443
No 169
>PRK14141 heat shock protein GrpE; Provisional
Probab=57.97 E-value=26 Score=27.58 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..+++.|+.++++++.++.++..+.+.++.+.++
T Consensus 37 ~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 37 PDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999887754
No 170
>PF14244 UBN2_3: gag-polypeptide of LTR copia-type
Probab=57.79 E-value=66 Score=22.84 Aligned_cols=82 Identities=11% Similarity=0.257 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCh-----HHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCC-HHHHHHHHHHHHHHHHH---HHHHHHH
Q psy16078 14 EAFRRYLEQSGV-----VDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPE-VAEYEAVLQDLDEAKAE---LDQLTAT 84 (111)
Q Consensus 14 EeFRkYLE~~GV-----lDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~-~~e~e~Lk~E~~~lk~~---i~~L~~e 84 (111)
.+|.++-...+. +.+++..++..|-.-+-+..+-+.|++.++. .. ...+-.|+.++..+++. +.+.-.+
T Consensus 50 ~~~~~W~~~d~~v~swl~~sis~~i~~~i~~~~tak~~W~~L~~~f~~--~~~~~r~~~L~~~l~~~kq~~~sv~ey~~~ 127 (152)
T PF14244_consen 50 PAYEKWERKDQLVLSWLLNSISPDILSTIIFCETAKEIWDALKERFSQ--KSNASRVFQLRNELHSLKQGDKSVTEYFNK 127 (152)
T ss_pred hhhhhHHHhhhHHHHHHHHhhcHHHHhhhHhhhhHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456666555554 4577888887777777777788899999998 66 78899999999999973 4555556
Q ss_pred HHHHH--HHhccccc
Q psy16078 85 VANLK--ERLSKYEV 97 (111)
Q Consensus 85 ~~eL~--~~l~~~e~ 97 (111)
+..|- .+|..+.|
T Consensus 128 lk~l~~~~el~~~~~ 142 (152)
T PF14244_consen 128 LKSLWQEDELDEYRP 142 (152)
T ss_pred HHHHhHHHHHhCcCC
Confidence 66676 45666666
No 171
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=57.70 E-value=12 Score=28.28 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHh
Q psy16078 13 KEAFRRYLEQSGVVDAITSALVMLY 37 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTkvLV~LY 37 (111)
+..|.+||+.-||=+.|+..|+.+-
T Consensus 161 q~~~~~yLeeRGId~~la~fl~~y~ 185 (204)
T PF02330_consen 161 QDAFMNYLEERGIDEELANFLHDYS 185 (204)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6789999999999999999998774
No 172
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=57.67 E-value=47 Score=25.95 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+...-.+|...|..+...|.++-.++..|-.
T Consensus 85 t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 85 TLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3333344444444444444444444444444
No 173
>PRK14154 heat shock protein GrpE; Provisional
Probab=57.62 E-value=28 Score=27.43 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+++.|++++++++.++.++..+.++++.+.++
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777766543
No 174
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.62 E-value=27 Score=23.69 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy16078 67 VLQDLDEAKAELDQL 81 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L 81 (111)
|.-|+++|+.+++.|
T Consensus 23 LQmEieELKEknn~l 37 (79)
T COG3074 23 LQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHhhHh
Confidence 333333333333333
No 175
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=57.57 E-value=44 Score=24.59 Aligned_cols=40 Identities=13% Similarity=0.379 Sum_probs=32.5
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 52 RNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 52 ~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
..+|.+ =...|++.|+.+|..+..+|++=..++..|+...
T Consensus 33 e~lge~-L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~ 72 (177)
T PF13870_consen 33 EELGEG-LHLIDFEQLKIENQQLNEKIEERNKELLKLKKKI 72 (177)
T ss_pred HHhcCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345654 3469999999999999999999998888887654
No 176
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.48 E-value=21 Score=26.57 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.+.+.+..|+++++.++...+.+++.|+.|.+.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888888888776553
No 177
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=57.45 E-value=59 Score=23.19 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVES 100 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~ 100 (111)
-...|....+++.+++.+|++....|...+...++...
T Consensus 79 ~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~~~~ 116 (131)
T cd04786 79 LLAALERKVADIEALEARLAQNKAQLLVLIDLIESKPD 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667888888888888888888888777777665544
No 178
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=57.44 E-value=61 Score=26.52 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLYSI 39 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LYEe 39 (111)
+-..||.||+.++=.|..+.-.+..++.
T Consensus 132 ~~~kyr~~L~~A~~sD~~v~~k~~~~~~ 159 (339)
T cd09235 132 EGSKYRTILDNAVQADKIVREKYESHRE 159 (339)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4568999999999999988776665543
No 179
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.42 E-value=43 Score=23.94 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=23.4
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
+-|+--.++. +...+...|++++++.+.++++-++++.+
T Consensus 12 iG~~~~r~~~--~~~~~q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 12 IGFLIGRLTS--SNQQKQAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHhc--cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666 44445566666666666666666655543
No 180
>PRK14143 heat shock protein GrpE; Provisional
Probab=57.30 E-value=26 Score=28.01 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+++.|+.++.+++.++.++..+.++++.+..+
T Consensus 75 el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 75 ELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666677777777666543
No 181
>KOG3335|consensus
Probab=57.13 E-value=43 Score=26.12 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.++..|+..+..|..+++++++.+.+|-+++.+.+
T Consensus 106 ~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~ 140 (181)
T KOG3335|consen 106 QEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPE 140 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 45667777777777777777777777776666654
No 182
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=57.12 E-value=19 Score=29.32 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=33.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 54 LGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 54 Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
||...-...=++.|..+..+|++++++|+.+++.+++++....
T Consensus 24 lG~~~l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d 66 (308)
T PF11382_consen 24 LGSGPLQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAAD 66 (308)
T ss_pred hcchhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554333455788999999999999999999999999986554
No 183
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=56.94 E-value=20 Score=23.06 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
=.++.|..-++.|+.+|.+++..+..-
T Consensus 21 lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 21 LSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665543
No 184
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=56.80 E-value=22 Score=29.84 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.-+..|...+..|..+++.|+.++..+.++|+++-
T Consensus 137 ~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v 171 (342)
T PF06632_consen 137 DANSRLQAENEHLQKENERLESEANKLLKQLEKFV 171 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777777664
No 185
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=56.75 E-value=28 Score=22.82 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
-|.+|+..+.++...+..|..+++.+...+
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444444444444433
No 186
>PLN02678 seryl-tRNA synthetase
Probab=56.68 E-value=16 Score=31.64 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHh-------hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRN-------LGDERPEVAEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~-------Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
..+.+++=|.+-|+-..+..-++.|+++--+=..-++-++.. +|.-....++.+.|..+..+|++++..|+.+
T Consensus 14 ~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~ 93 (448)
T PLN02678 14 DPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAE 93 (448)
T ss_pred CHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888852123455667776544333334433322 2210112345677777777888888888877
Q ss_pred HHHHHHHhccc
Q psy16078 85 VANLKERLSKY 95 (111)
Q Consensus 85 ~~eL~~~l~~~ 95 (111)
+.++..++...
T Consensus 94 ~~~~~~~l~~~ 104 (448)
T PLN02678 94 VQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHH
Confidence 77777777543
No 187
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.65 E-value=24 Score=31.10 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=22.7
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 46 PLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
|-|=||.-.|...-...++..|..+|+.|++++++|++
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555444456666666666666666666655
No 188
>PRK14151 heat shock protein GrpE; Provisional
Probab=56.55 E-value=31 Score=26.25 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+++.|+.++++++.++-++..+.++++.+.++
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~k 59 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQ 59 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777766543
No 189
>KOG3335|consensus
Probab=56.51 E-value=29 Score=27.03 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
=+.-++++.+|+.++..|+.+++++++.+.++-
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999998885
No 190
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=56.45 E-value=41 Score=20.09 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 58 RPEVAEYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 58 ~p~~~e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
.|+..++..||.+--.||.+|..+.+
T Consensus 23 ~~~d~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 23 EPDDEELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 37788899999999999988887764
No 191
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.40 E-value=25 Score=28.66 Aligned_cols=45 Identities=29% Similarity=0.505 Sum_probs=22.1
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+.=+|.-|-.. ..+++.+++++++++.+...+...+++++++..+
T Consensus 211 L~~lr~eL~~~---~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 211 LEALRQELAEQ---KEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555442 3555555555555555555555555444444433
No 192
>PRK09039 hypothetical protein; Validated
Probab=56.20 E-value=20 Score=29.62 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
+|..|+++++.|+.++..|+.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 193
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.20 E-value=43 Score=21.57 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
++...+.+...++..|..++..|+.+++.
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555543
No 194
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=56.19 E-value=35 Score=23.88 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+..|..++..+..+++.|+..+..+.+++..+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666677777777777766666666666544
No 195
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=56.13 E-value=49 Score=25.75 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++..|... .+.+|+-++..++.+.+.+|+.++.++..|..++.
T Consensus 151 l~~ll~ka-~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 151 LLELLEKA-KTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55556543 36889999999999999999999999999998874
No 196
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=55.97 E-value=34 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.366 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
-+.+..++++|+.++++|..+++.++
T Consensus 107 e~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 107 EEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555554443
No 197
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=55.92 E-value=30 Score=22.98 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
.+++.++++...|+.++..|.-++..|.
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555555555443
No 198
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=55.89 E-value=18 Score=25.74 Aligned_cols=39 Identities=13% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCCCCChhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCC
Q psy16078 4 IPETPNEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKP 43 (111)
Q Consensus 4 ~~~~~~dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP 43 (111)
.|+++..|=|.-||||+..-| |+.-.+.--..-...+-|
T Consensus 59 ~p~HT~~sWRDR~RKfv~~~g-i~~Yi~Yye~~~~~g~~P 97 (105)
T PF09197_consen 59 NPRHTENSWRDRYRKFVSEYG-IQSYIEYYEKCRANGEEP 97 (105)
T ss_dssp TTTS-HHHHHHHHHHTHHHH--HHHHHHHHHHHHHTT---
T ss_pred CCccchhHHHHHHHHHHHHcC-hHHHHHHHHHHHHcCCCC
Confidence 478999999999999999999 555555444444444444
No 199
>PHA01750 hypothetical protein
Probab=55.80 E-value=28 Score=23.34 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+-.++|++.|+.++.+++.+.+++..++...
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5578899999999999999999999888654
No 200
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=55.49 E-value=21 Score=24.74 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+..|+++++.+.+.+..|...+.++..-+..+
T Consensus 6 ~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 6 AELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777766666554433
No 201
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=55.31 E-value=22 Score=23.40 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 71 LDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+.+|-++|.-|+.+|+-|++++.+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777777777654
No 202
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=55.04 E-value=43 Score=21.37 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
..++-.++.++..+.+ +..+++++..|..+|
T Consensus 58 a~e~~~~~~~~~~~~~-~~~l~~~i~~L~~~l 88 (89)
T PF05164_consen 58 ADELLKLKRELDELEE-LERLEERIEELNERL 88 (89)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhh
Confidence 4667777777777766 667778888877766
No 203
>KOG4196|consensus
Probab=55.02 E-value=34 Score=25.50 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..|.++++.|+.++.++..+..-++.+.+++.+.
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666677777777777666666554
No 204
>PRK14163 heat shock protein GrpE; Provisional
Probab=55.01 E-value=32 Score=27.20 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+++.|+.++.+++.++-++..+.++++.+..+
T Consensus 47 ~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 47 AQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666777777777666543
No 205
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=54.93 E-value=52 Score=21.58 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy16078 74 AKAELDQLTATVANLKERLS 93 (111)
Q Consensus 74 lk~~i~~L~~e~~eL~~~l~ 93 (111)
|..+++.|++++..|+..+.
T Consensus 70 l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 70 LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777777664
No 206
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=54.88 E-value=34 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+..|+.+++.|.+++..|...+.+++.-+
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 207
>PRK09039 hypothetical protein; Validated
Probab=54.59 E-value=25 Score=29.15 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++..++....+.+.++..|+++|+.|+++|..+
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555555555555554443
No 208
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=54.54 E-value=26 Score=23.28 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..+..+..+++.+++++..|+.++..|+-++..+..+
T Consensus 35 ~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 35 HQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 3466777888888888888888888888888777654
No 209
>PHA00728 hypothetical protein
Probab=54.44 E-value=20 Score=26.84 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.++++|+.++++|++.+++|.+-+..
T Consensus 5 teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 46777777777777777777766644
No 210
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=54.35 E-value=25 Score=28.77 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+-+.|.+++.+|.++.++|.+++..|+.+...+
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 211
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.28 E-value=28 Score=27.07 Aligned_cols=22 Identities=23% Similarity=0.204 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
+.+..+-.+|..++..|+++++
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e 66 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIE 66 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 212
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=54.27 E-value=19 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q psy16078 76 AELDQLTATVANLKERLSKY 95 (111)
Q Consensus 76 ~~i~~L~~e~~eL~~~l~~~ 95 (111)
.++..|..+|..|.++|.++
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555443
No 213
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=54.27 E-value=28 Score=25.33 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.++.|.++++.|+-++..|++++.
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444443
No 214
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=54.20 E-value=1e+02 Score=30.15 Aligned_cols=68 Identities=25% Similarity=0.283 Sum_probs=42.4
Q ss_pred HHHHHHHHHHH-------hcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 26 VDAITSALVML-------YSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQ---DLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 26 lDaLTkvLV~L-------YEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~---E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+.+-+.|..| -.....|.+.-+||+++|.. .+..+|+.|.. .+++++.+++.|++.+..|..=+..|
T Consensus 179 ~~ry~~l~~~l~~lr~P~Ls~~~~~~~l~~~l~~~l~~--l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y 256 (1353)
T TIGR02680 179 EERYAALLDLLIQLRQPQLSKKPDEGVLSDALTEALPP--LDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRY 256 (1353)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 33455666788999999998 55566666554 34455567777777776666554444
No 215
>PRK14139 heat shock protein GrpE; Provisional
Probab=54.13 E-value=35 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+++.|+.++.+++.++-++..+.++++.+.+
T Consensus 39 ~~l~~le~e~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 39 AELAEAEAKAAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666677777777777777777666654
No 216
>PRK14162 heat shock protein GrpE; Provisional
Probab=54.09 E-value=35 Score=26.50 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+++.|+.++++++.++.++..+.++++.+.+
T Consensus 47 ~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 47 EIADLKAKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666554
No 217
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.92 E-value=30 Score=26.88 Aligned_cols=13 Identities=8% Similarity=0.455 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKA 76 (111)
Q Consensus 64 ~e~Lk~E~~~lk~ 76 (111)
+..|..+++.|+.
T Consensus 58 ~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 58 YRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 218
>PRK14148 heat shock protein GrpE; Provisional
Probab=53.87 E-value=33 Score=26.64 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++.|+.++++++.++.++..+.+.++.+.+
T Consensus 49 l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 49 IKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555443
No 219
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=53.83 E-value=21 Score=28.34 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.|...+++|+++|.+|+-+++++.-+|+++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 556666666666666666666666666653
No 220
>KOG2483|consensus
Probab=53.73 E-value=30 Score=27.65 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.=|..|+.......+.++.|..++..|+.+|+++...
T Consensus 105 ~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~ 141 (232)
T KOG2483|consen 105 EHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSLP 141 (232)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4466777777777778888888888888887776633
No 221
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=53.55 E-value=28 Score=29.10 Aligned_cols=9 Identities=33% Similarity=0.966 Sum_probs=6.5
Q ss_pred CCCCHHHHH
Q psy16078 42 KPEDPLDFI 50 (111)
Q Consensus 42 kP~dalefi 50 (111)
||++|=.||
T Consensus 52 kPP~PEQYL 60 (305)
T PF15290_consen 52 KPPNPEQYL 60 (305)
T ss_pred CCCCHHHhc
Confidence 778877773
No 222
>PF14645 Chibby: Chibby family
Probab=53.30 E-value=40 Score=24.06 Aligned_cols=29 Identities=14% Similarity=0.113 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..+...+++++..|+++++.|+-+++=|-
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~elLl 98 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIELLL 98 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888877776543
No 223
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=53.05 E-value=24 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
+..|+.+++.+++++..|...+.++..-
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~ 35 (129)
T cd00584 8 LQVLQQEIEELQQELARLNEAIAEYEQA 35 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665555554433
No 224
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=52.98 E-value=11 Score=21.18 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=9.3
Q ss_pred hHHHHHHHHHhc
Q psy16078 12 NKEAFRRYLEQS 23 (111)
Q Consensus 12 KrEeFRkYLE~~ 23 (111)
-+++||+||+..
T Consensus 18 s~eeir~FL~~~ 29 (30)
T PF08671_consen 18 SKEEIREFLEFN 29 (30)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHhC
Confidence 379999999853
No 225
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=52.73 E-value=23 Score=31.38 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
...+++.|++++..||+++.+|++++.
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777766665543
No 226
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.66 E-value=48 Score=26.91 Aligned_cols=34 Identities=18% Similarity=0.431 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.+. .|..++..++++...|..+++++.+.+..+.
T Consensus 51 r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 51 RDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 8889999999999999999999999988887
No 227
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=52.61 E-value=29 Score=23.78 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.......++..|+.++..|+.++..+..++..|.+.
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKY 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777777777766553
No 228
>KOG2483|consensus
Probab=52.24 E-value=17 Score=29.01 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=28.0
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~ 82 (111)
.-|++||....-...-...+++.|+.++..|++++++|.
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457888887766544556777777777777777777666
No 229
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=52.20 E-value=43 Score=22.97 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..+|+++-..++.|-.-+..|++++..|.++|..+-
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LL 60 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELL 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 466777777777777777777777777777766553
No 230
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.12 E-value=64 Score=21.67 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
..+++-.|-.+...++.+++.|+.+.+.+..++.+...
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34556666666667777777777776666666655443
No 231
>PRK14162 heat shock protein GrpE; Provisional
Probab=52.02 E-value=37 Score=26.34 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
|...+++.|..+++.|+.++.+|+....-+.+.++.|.
T Consensus 36 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 36 EKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888887777777766553
No 232
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=51.58 E-value=30 Score=24.79 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+..++..|++++..|+++++-|+-+|+-|-.-|
T Consensus 69 ~~~~e~~rlkkk~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 69 VSGREVLRLKKKNQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888877665444
No 233
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.45 E-value=48 Score=29.35 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=20.8
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 49 FIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 49 fir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
=|.+.|... |..+++..|..++.++..++..++.++..++.++
T Consensus 409 ~l~~~l~~~-~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~ 451 (650)
T TIGR03185 409 EVDKKISTI-PSEEQIAQLLEELGEAQNELFRSEAEIEELLRQL 451 (650)
T ss_pred HHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555542 4445555555555555555444444444443333
No 234
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.43 E-value=31 Score=28.85 Aligned_cols=39 Identities=15% Similarity=0.369 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
.+....|..|+..|++++.+++..|.-|+.++.++....
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 466778888888888888888888888888888876654
No 235
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=51.36 E-value=55 Score=25.10 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHH-HhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 24 GVVDAITSALVM-LYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 24 GVlDaLTkvLV~-LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
||+..|..++.+ +.+-=++=+||..-|.+++-.. ..++..++..+..+...-..+++++.++......++.
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem---~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~ 73 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEM---EDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE 73 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666552 2223344556666666666552 3588888889998888888888888888888777654
No 236
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=51.33 E-value=48 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
...+..+..+++.++.++..+.+++..|+.++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 86 EERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777777777777777777777776654
No 237
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.33 E-value=51 Score=22.36 Aligned_cols=31 Identities=13% Similarity=0.407 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+-+....+.++.++..|++.+..+..++..
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 119 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITE 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444444443
No 238
>KOG4343|consensus
Probab=51.15 E-value=31 Score=31.41 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVES 100 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~ 100 (111)
+=+.-|+.-++.|-++++.|++|+..|+.+|..+..+..
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~ 340 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQ 340 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCc
Confidence 335567777777777777777778888888777776543
No 239
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=51.15 E-value=41 Score=22.88 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+..++.+.+.|..+++.+..+|..|..+|...
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788999999999999999999999998754
No 240
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.13 E-value=27 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
.+..|+.+++.+.+.+..|...+.++.
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~ 33 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYE 33 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444
No 241
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.95 E-value=40 Score=27.00 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
+.|+.++..+.+++++.++-|..|..-|.+....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678888888888888888888888888777654
No 242
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=50.92 E-value=78 Score=30.15 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=52.1
Q ss_pred hHHHH--HHHHHhcChHHHHHHHH------HHHhcCCCCCCCHHHHHHHhhCCCC-------------CCHHHHHHHHHH
Q psy16078 12 NKEAF--RRYLEQSGVVDAITSAL------VMLYSIEEKPEDPLDFIRRNLGDER-------------PEVAEYEAVLQD 70 (111)
Q Consensus 12 KrEeF--RkYLE~~GVlDaLTkvL------V~LYEe~ekP~dalefir~~Lg~~~-------------p~~~e~e~Lk~E 70 (111)
||-+| .+..++..+++-|-+++ |.+--....+.+|...|...|+-.. =+.-|+++|++|
T Consensus 375 rr~~~~l~k~~~r~~i~eGl~~a~~~id~vi~~ir~s~~~~~a~~~l~~~f~~s~~qa~aIl~mrL~~Lt~le~~kl~~E 454 (957)
T PRK13979 375 RRTKKELEIAEKRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDASENLIEKFGFTDEQAEAILELMLYRLTGLEIVAFEKE 454 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhCCCHHHHHHHHhCcHHhhhhhHHHHHHHH
Confidence 44444 46778888887777764 4455566777899999998887631 134678888888
Q ss_pred HHHHHHHHHHHHHH
Q psy16078 71 LDEAKAELDQLTAT 84 (111)
Q Consensus 71 ~~~lk~~i~~L~~e 84 (111)
.++|+.+|+.|+.-
T Consensus 455 ~~eL~~~I~~l~~i 468 (957)
T PRK13979 455 YKELEKLIKKLTKI 468 (957)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877654
No 243
>PRK14164 heat shock protein GrpE; Provisional
Probab=50.88 E-value=39 Score=26.75 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
...++..|+.++.+++.++.++..+.++++.+.++
T Consensus 75 ~~~~~~~le~el~el~d~llR~~AE~eN~RkR~~r 109 (218)
T PRK14164 75 DDGEASTVEAQLAERTEDLQRVTAEYANYRRRTER 109 (218)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999988754
No 244
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=50.71 E-value=38 Score=22.23 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=24.8
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 52 RNLGDERPEVAEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 52 ~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
+.+|-.-.....+=.|..+++.|++++.+|++.+
T Consensus 55 ~d~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 55 QELGVNLAGVKRILELEEELAELRAELDELRARL 88 (91)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466644455667778888999999998888765
No 245
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.67 E-value=47 Score=22.33 Aligned_cols=30 Identities=13% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
...|..++..|+.+...|..++..|+.++.
T Consensus 70 ~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 70 DQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566677777777777777777777654
No 246
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=50.63 E-value=69 Score=20.92 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.++.+...+.++++.=..|...+..+..+|...
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~ 47 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKEL 47 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555444
No 247
>KOG3958|consensus
Probab=50.52 E-value=1.2e+02 Score=25.85 Aligned_cols=72 Identities=24% Similarity=0.327 Sum_probs=50.1
Q ss_pred ChhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCC-CCCHHHHHHHHHHHHHHH------------
Q psy16078 9 NEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDE-RPEVAEYEAVLQDLDEAK------------ 75 (111)
Q Consensus 9 ~dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~-~p~~~e~e~Lk~E~~~lk------------ 75 (111)
.++--|+-.-|+--+-||.+|-|+|++|. +-+.||-. +|+..-++.|-..++.-+
T Consensus 117 k~~a~Eek~t~~l~A~vla~lkk~l~al~------------leq~lGk~atp~~~~vk~ll~q~E~~k~sg~~t~~p~p~ 184 (371)
T KOG3958|consen 117 KESATEEKLTPVLLAKVLAALKKQLVALH------------LEQLLGKDATPDGALVKRLLLQLEATKNSGKTTGTPRPE 184 (371)
T ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHH------------HHHHhCCCCCCcHHHHHHHHHHHHhhcccCcccCCCCCC
Confidence 34445777888889999999999999996 55556654 366666666665555443
Q ss_pred ------HHHHHHHHHHHHHHHHh
Q psy16078 76 ------AELDQLTATVANLKERL 92 (111)
Q Consensus 76 ------~~i~~L~~e~~eL~~~l 92 (111)
.++++|++++.+|..-+
T Consensus 185 ~d~s~~akVA~LE~Rlt~lE~vv 207 (371)
T KOG3958|consen 185 QDFSQAAKVAELEKRLTELETVV 207 (371)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777666554
No 248
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=50.50 E-value=62 Score=27.19 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
-||++||-+.|-. ...+..+-.-++.++.++..|..+|.++-...
T Consensus 4 fdpv~~in~lfp~----e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q 48 (383)
T PF04100_consen 4 FDPVDYINELFPD----EQSLSNLDELIAKLRKEIRELDEEIKELVREQ 48 (383)
T ss_pred CCHHHHHHHhCCC----hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999955 55555666666777777777777777655443
No 249
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=50.35 E-value=45 Score=22.81 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..++..|+.++..|+.++..+...+..++
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777776654
No 250
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=50.34 E-value=62 Score=27.11 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCCCCC---HHHHHHHhhCCCCCCHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 27 DAITSALVMLYSIEEKPED---PLDFIRRNLGDERPEVAEYE-AVLQD---LDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 27 DaLTkvLV~LYEe~ekP~d---alefir~~Lg~~~p~~~e~e-~Lk~E---~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
|.|+..+.++++....|+. .++-|+.+|.. ..|+. .|..+ ++.+..+...+..++.+++.+..+
T Consensus 236 e~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~----NkDL~~~l~~e~qkL~~l~~k~~~~~~~v~~~~~~~~q 306 (307)
T PF15112_consen 236 EKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRN----NKDLRSNLQEELQKLDSLQTKHQKLESDVKELKSQMPQ 306 (307)
T ss_pred HHHHHHHHHHhhccccchhhhHHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHhhccC
Confidence 6788888999998877754 44556666666 33433 44433 444555666666666666665543
No 251
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=50.34 E-value=20 Score=30.12 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q psy16078 61 VAEYEAVLQDLDEAKAELDQL---TATVANLKERL 92 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L---~~e~~eL~~~l 92 (111)
..|-+.|++||.+|+.++..+ .+++..|+..+
T Consensus 63 ~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll 97 (337)
T PRK14872 63 ETENFLLKERIALLEERLKSYEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777888888886655543 34444444333
No 252
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.21 E-value=65 Score=21.07 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q psy16078 76 AELDQLTATVANL 88 (111)
Q Consensus 76 ~~i~~L~~e~~eL 88 (111)
.+++.+..++..|
T Consensus 54 ~~~~~~e~~~~~l 66 (74)
T PF12329_consen 54 KKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 253
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=50.19 E-value=41 Score=23.87 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
...+..|+.++..++.++..|+.+....+..|...+
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e 93 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESE 93 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888899999888888888888888776544
No 254
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=50.10 E-value=28 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.++.++..|+.++..|++++..|+.++..+
T Consensus 15 ~~~~e~~~Lk~kir~le~~l~~Lk~~l~~~ 44 (236)
T PF12017_consen 15 TLKIENKKLKKKIRRLEKELKKLKQKLEKY 44 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888877777776543
No 255
>KOG4234|consensus
Probab=49.85 E-value=24 Score=28.80 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.0
Q ss_pred HHhcCCCCCCCHHHHHHHhhCCCCCCH
Q psy16078 35 MLYSIEEKPEDPLDFIRRNLGDERPEV 61 (111)
Q Consensus 35 ~LYEe~ekP~dalefir~~Lg~~~p~~ 61 (111)
-+||.-+||+++++=.++.+-.+ |..
T Consensus 176 eayek~ek~eealeDyKki~E~d-Ps~ 201 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESD-PSR 201 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-cch
Confidence 39999999999999999998774 543
No 256
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=49.73 E-value=67 Score=21.71 Aligned_cols=22 Identities=9% Similarity=0.273 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16078 67 VLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
|+..+..|-.+|+..+.+++.|
T Consensus 28 LQ~sL~~L~~Rve~Vk~E~~kL 49 (80)
T PF10224_consen 28 LQDSLEALSDRVEEVKEENEKL 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 257
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=49.66 E-value=56 Score=19.64 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=18.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDL-DEAKAELDQLTATVAN 87 (111)
Q Consensus 61 ~~e~e~Lk~E~-~~lk~~i~~L~~e~~e 87 (111)
..|++.+++|+ ++++.++..++.+|.+
T Consensus 2 ~~dle~~KqEIL~EvrkEl~K~K~EIIe 29 (40)
T PF08776_consen 2 SSDLERLKQEILEEVRKELQKVKEEIIE 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888774 6677777777777654
No 258
>PHA02046 hypothetical protein
Probab=49.61 E-value=54 Score=23.25 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=30.3
Q ss_pred HHhcCCCCCCCH------HHHHHHh-hCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy16078 35 MLYSIEEKPEDP------LDFIRRN-LGDERPEVAEYEAVLQDLDEAKAELD 79 (111)
Q Consensus 35 ~LYEe~ekP~da------lefir~~-Lg~~~p~~~e~e~Lk~E~~~lk~~i~ 79 (111)
.-|-+.+-|-++ ..|++++ +.|+..+.++++.|+.+..+-+....
T Consensus 26 ~~~re~eiPlpaad~aa~~KFLKDNnItcdpaD~~~m~~Lr~e~~~~~a~rr 77 (99)
T PHA02046 26 KWYRENDIPLPAADKAAIAKFLKDNEITCDPADTINIDRLREEFRQAQAENR 77 (99)
T ss_pred HHHHhcCCCCchHHHHHHHHHhhcCCcccCcccHHHHHHHHHHHHHHHHHHH
Confidence 345566666553 4578776 55544478899999999887766543
No 259
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=49.39 E-value=88 Score=21.82 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
..-|....+++.+++.+|+.....|...+..+..
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 114 (126)
T cd04785 81 DAIARAHLADVRARIADLRRLEAELKRMVAACSG 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4557888899999999998888888887766543
No 260
>PRK14158 heat shock protein GrpE; Provisional
Probab=49.28 E-value=44 Score=25.96 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+++.|+.++.+++.++-++..+.+.++.+.+
T Consensus 48 ~l~~le~e~~el~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 48 ALAAKEAEAAANWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666554
No 261
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.13 E-value=50 Score=24.90 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=19.1
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+=|-.++...... ...++.|+..++.+...+..|+..+..|+.++
T Consensus 84 dLAr~al~~k~~~----e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl 128 (221)
T PF04012_consen 84 DLAREALQRKADL----EEQAERLEQQLDQAEAQVEKLKEQLEELEAKL 128 (221)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544443 33344444444444444444444444443333
No 262
>PRK14140 heat shock protein GrpE; Provisional
Probab=49.07 E-value=47 Score=25.72 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
++.|+.++++++.++.++..+.+.++.+.
T Consensus 46 i~~l~~ei~elkd~~lR~~Ae~eN~rkR~ 74 (191)
T PRK14140 46 IAELEAKLDELEERYLRLQADFENYKRRI 74 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555444
No 263
>PHA03162 hypothetical protein; Provisional
Probab=49.02 E-value=31 Score=25.76 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
...+|.|.+|++.|+-++..|++++
T Consensus 12 ~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 12 QPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777666666666555554
No 264
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.02 E-value=56 Score=22.45 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..|....+.+...+..|+++...|+.++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 265
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=49.02 E-value=22 Score=31.97 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
...+..|+.++..|..++..|..++..|..+|.+
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999976
No 266
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=49.00 E-value=1.4e+02 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy16078 11 KNKEAFRRYLEQSGVVDAITSALVMLYS 38 (111)
Q Consensus 11 sKrEeFRkYLE~~GVlDaLTkvLV~LYE 38 (111)
.+-..||.||+.++=.|+.+.-.+..++
T Consensus 134 ~~~~~~~~~L~~A~~sD~~v~~k~~~~~ 161 (353)
T cd09236 134 TQAAEYEGYLKQAGASDELVRRKLDEWE 161 (353)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678999999999999998877666554
No 267
>PF11393 IcmL: Macrophage killing protein with similarity to conjugation protein; InterPro: IPR021055 IcmL contains two amphipathic beta-sheet regions, required for the pore-forming ability which may be related to the transfer of this protein into a host cell membrane []. The icmL gene shows significant similarity to plasmid genes involved in conjugation however IcmL is thought to be required for macrophage killing. It is unknown whether conjugation plays a role in macrophage killing [].
Probab=48.88 E-value=22 Score=24.63 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHhcChHHHHHHHH
Q psy16078 11 KNKEAFRRYLEQSGVVDAITSAL 33 (111)
Q Consensus 11 sKrEeFRkYLE~~GVlDaLTkvL 33 (111)
.-...|.+.|+++|+|+++.+--
T Consensus 53 ~g~~~f~~aL~~Sg~l~~ik~~~ 75 (108)
T PF11393_consen 53 EGWNSFQKALQKSGILDAIKDKR 75 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHhcc
Confidence 34577999999999999997643
No 268
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=48.85 E-value=38 Score=29.38 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=56.4
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcCC---------------CCCCCHHHHHHH-hhCCCC---CCHHHHHHHHHHHHHHH
Q psy16078 15 AFRRYLEQSGVVDAITSALVMLYSIE---------------EKPEDPLDFIRR-NLGDER---PEVAEYEAVLQDLDEAK 75 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~LYEe~---------------ekP~dalefir~-~Lg~~~---p~~~e~e~Lk~E~~~lk 75 (111)
.|.+||.+.|=++.+.+.+-.+-+.. .-|+.-++.||. ..+++. +...+++.|+.|.+-++
T Consensus 208 ~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ 287 (511)
T PF09787_consen 208 HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQ 287 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHH
Confidence 56677777777777766665543211 234666777888 333221 22356889999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q psy16078 76 AELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 76 ~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
.++..|+.++..+..+++..+.
T Consensus 288 ee~~~l~~Qi~~l~~e~~d~e~ 309 (511)
T PF09787_consen 288 EEIQLLERQIEQLRAELQDLEA 309 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887766554
No 269
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.79 E-value=69 Score=20.91 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESD 101 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~ 101 (111)
..+..|+.++..+..++..|..++.++...+..+..-+++
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4577888889999999999988888777766666665444
No 270
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.71 E-value=52 Score=25.05 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=49.7
Q ss_pred HHHHHHHHh-cChHHHHHH-HHHHHhcCCCCCCCHHHHHHHhhCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 14 EAFRRYLEQ-SGVVDAITS-ALVMLYSIEEKPEDPLDFIRRNLGDER----PEVAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 14 EeFRkYLE~-~GVlDaLTk-vLV~LYEe~ekP~dalefir~~Lg~~~----p~~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
.+.-|.+-+ .||+-...| ||-+|-.+ .. + -....|... -+......++..++.|+++++.++.++.+
T Consensus 15 KELEK~~pK~~gI~~~~VKdvlq~LvDD-gl----V--~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~ 87 (188)
T PF03962_consen 15 KELEKLAPKEKGIVSMSVKDVLQSLVDD-GL----V--HVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEE 87 (188)
T ss_pred HHHHHHcccccCCchhhHHHHHHHHhcc-cc----c--hhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 788888877 66666432 11 1 123455543 23466777788888888888888888888
Q ss_pred HHHHhccccc
Q psy16078 88 LKERLSKYEV 97 (111)
Q Consensus 88 L~~~l~~~e~ 97 (111)
|+.++.....
T Consensus 88 l~~~i~~~~~ 97 (188)
T PF03962_consen 88 LEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHh
Confidence 8877766543
No 271
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=48.65 E-value=44 Score=27.09 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..++.|+.++.+++.++..+++++..++.++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4678888888888888888888888888888776554
No 272
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.51 E-value=61 Score=20.85 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+++.+.+..+-.+..++.+-..++.+|..++..
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~ 50 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIER 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555554443
No 273
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=48.43 E-value=41 Score=23.63 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q psy16078 81 LTATVANLKERL 92 (111)
Q Consensus 81 L~~e~~eL~~~l 92 (111)
-+++|++|...|
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 444444444443
No 274
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=48.22 E-value=22 Score=28.66 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVES 100 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~ 100 (111)
......-+.++.+||.+|+.|+..|++||.+.-.-++
T Consensus 110 ~~~~~~~~~~AlqKIsALEdELs~LRaQIA~IV~~qe 146 (253)
T PF05308_consen 110 KQSDLPANEAALQKISALEDELSRLRAQIAKIVAAQE 146 (253)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3335555777888888888888888888877655443
No 275
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=48.00 E-value=61 Score=19.55 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..+...++++.+++++|.+-...|.
T Consensus 39 ~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 39 ALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777777777666555543
No 276
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=47.99 E-value=1e+02 Score=22.89 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++=|+..|.. +...-...|...++++.++|.+|+.....|..-+...
T Consensus 61 L~eI~~ll~~--~~~~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~ 107 (172)
T cd04790 61 LEDIRSLLQQ--PGDDATDVLRRRLAELNREIQRLRQQQRAIATLLKQP 107 (172)
T ss_pred HHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555 2233455677788888888888888777777666443
No 277
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=47.98 E-value=41 Score=24.13 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+++.|..++++++.++.++.+++++++.++.+.
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e 51 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRLEKE 51 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888888877777554
No 278
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.82 E-value=47 Score=23.73 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.|++.|...++.|+.+++.+++++..++.+
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~ 95 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEK 95 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.77 E-value=15 Score=31.74 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=32.0
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcCC----C--CCCCHHHHHHHhhCCC
Q psy16078 15 AFRRYLEQSGVVDAITSALVMLYSIE----E--KPEDPLDFIRRNLGDE 57 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~LYEe~----e--kP~dalefir~~Lg~~ 57 (111)
+|.+||.+.||-+.+...|+....+. . -+.+...++++.|...
T Consensus 146 ~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~ 194 (407)
T PRK12726 146 DFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGK 194 (407)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCc
Confidence 99999999999999888887766544 2 2345667777777653
No 280
>PRK14144 heat shock protein GrpE; Provisional
Probab=47.75 E-value=47 Score=25.95 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+++.|+.++++++.++-++..+.++++.+.++
T Consensus 52 ~~i~~le~e~~elkdk~lR~~AefeN~RKR~~k 84 (199)
T PRK14144 52 EQLTLAEQKAHENWEKSVRALAELENVRRRMER 84 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888888887777643
No 281
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=47.71 E-value=40 Score=23.43 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
...++..|++++.+|+.+++-|++...
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998764
No 282
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.64 E-value=34 Score=30.26 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+.+++++++|+.|+.+|..|+.+++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344677777788888888888874
No 283
>PHA03155 hypothetical protein; Provisional
Probab=47.42 E-value=37 Score=24.70 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 71 LDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.++|..++..|+-+|..|+.+|.+--
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~ 35 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHG 35 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 57888999999999999999996643
No 284
>PRK14160 heat shock protein GrpE; Provisional
Probab=47.17 E-value=43 Score=26.41 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+..|+.++..|++++..|++++.+++.++
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~ 84 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRL 84 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554444
No 285
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=47.16 E-value=91 Score=24.50 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=17.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHH
Q psy16078 15 AFRRYLEQSGVVDAITSALVML 36 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~L 36 (111)
-|-.|+++-.-|.+=.+.|-.-
T Consensus 12 Rla~YIekVr~LE~~N~~Le~~ 33 (312)
T PF00038_consen 12 RLASYIEKVRFLEQENKRLESE 33 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH
Confidence 3778999999988888877544
No 286
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=47.14 E-value=50 Score=25.35 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.++..|+.++++++.++.++.++++.++.+.++.
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re 76 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTERE 76 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999998887653
No 287
>KOG4438|consensus
Probab=47.09 E-value=2e+02 Score=25.34 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 9 NEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 9 ~dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
-|+|+..|+.++..-|-++-+-+-|=+-| -+++.=+-.+=+...++.+++..|...+++|.+.+..+..+...+
T Consensus 126 Re~k~~~~~~~~~q~eslle~~~q~da~~------qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l 199 (446)
T KOG4438|consen 126 REEKMDLYRPFIQQLESLLELRKQLDAKY------QQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSL 199 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999888875444433322 233333334445556788899999999999999998888888777
Q ss_pred HHHhccc
Q psy16078 89 KERLSKY 95 (111)
Q Consensus 89 ~~~l~~~ 95 (111)
..+-..+
T Consensus 200 ~~e~n~~ 206 (446)
T KOG4438|consen 200 LAEYNKM 206 (446)
T ss_pred HHHHHHH
Confidence 7665544
No 288
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=47.08 E-value=43 Score=27.51 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 70 DLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
|+.+|..++.+|+.+.++++.+|+.
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444433
No 289
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=47.04 E-value=27 Score=25.55 Aligned_cols=21 Identities=14% Similarity=0.490 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q psy16078 75 KAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 75 k~~i~~L~~e~~eL~~~l~~~ 95 (111)
+..|+.|..+|.+|.++|+.+
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444
No 290
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=46.94 E-value=31 Score=25.12 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 70 DLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..++|..++..|+-||..|+.+|.+--
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 478999999999999999999998765
No 291
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.90 E-value=91 Score=25.64 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCh-HHHHHHHHHHHhcCCCCCCC--HHHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 13 KEAFRRYLEQSGV-VDAITSALVMLYSIEEKPED--PLDFIRRNLGDE-RPEVAEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 13 rEeFRkYLE~~GV-lDaLTkvLV~LYEe~ekP~d--alefir~~Lg~~-~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
.-..-++|+++|| ++-|-..|..+.+.-+.=.. ...--++..-.. .-...+++.+..++.+..+++.++..++.+.
T Consensus 154 ~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~ 233 (269)
T PF05278_consen 154 MIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM 233 (269)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888877 67777777776543111000 000000000000 0013556666666777777777777777777
Q ss_pred HHHhcccc
Q psy16078 89 KERLSKYE 96 (111)
Q Consensus 89 ~~~l~~~e 96 (111)
+++|.+++
T Consensus 234 ~~rl~~l~ 241 (269)
T PF05278_consen 234 KGRLGELE 241 (269)
T ss_pred HHHHHHHH
Confidence 77776654
No 292
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=46.74 E-value=25 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 71 LDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
...++.+|..|..+|..|+++|..
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655543
No 293
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=46.56 E-value=58 Score=27.04 Aligned_cols=65 Identities=17% Similarity=0.403 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCC-CCCHHHH------HHHhhCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 31 SALVMLYSIEEK-PEDPLDF------IRRNLGDERP--EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 31 kvLV~LYEe~ek-P~dalef------ir~~Lg~~~p--~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
-++..+|+.-+. =..|++| |+..|-.=.. -...+.++...+.+.+..|+.|+++++.|+.++..|
T Consensus 34 gA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 34 GAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777766555 2455555 6666544111 123345555555555555666666666666555544
No 294
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=46.32 E-value=58 Score=23.20 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
...+..|..||..|+.++..|.+.+.++.
T Consensus 28 K~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 28 KKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666777788888888888888777763
No 295
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=46.24 E-value=19 Score=23.24 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcChHHHHHH
Q psy16078 13 KEAFRRYLEQSGVVDAITS 31 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTk 31 (111)
..-|.++|.+.||.++|-+
T Consensus 33 ~~rf~~~L~~~Gv~~~L~~ 51 (69)
T PF09269_consen 33 LRRFQRKLKKMGVEKALRK 51 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHH
Confidence 5679999999999999865
No 296
>KOG4343|consensus
Probab=46.17 E-value=28 Score=31.67 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..-+.+|.+||+.||.++..|++++..|-.+=..++..
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvp 345 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQLDELVSENQRLKVP 345 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccC
Confidence 45677888888888888888888888877655544443
No 297
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.13 E-value=52 Score=25.19 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
..|+..++.++.++..+++++.+++.
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 298
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.11 E-value=45 Score=25.38 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
...+..++.+|+.++..|+.++.+++.+.+..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554433
No 299
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=46.06 E-value=1.1e+02 Score=21.93 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.+.|...++++.+++++|+.....|...+..+.
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (135)
T PRK10227 81 KRRTLEKVAEIERHIEELQSMRDQLLALANACP 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345677788888888888888888887776554
No 300
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=46.05 E-value=80 Score=23.47 Aligned_cols=31 Identities=29% Similarity=0.592 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+..+..++++++.+++.+++++..+...+..
T Consensus 48 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 48 LNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777888888888888888888777653
No 301
>PTZ00378 hypothetical protein; Provisional
Probab=45.98 E-value=39 Score=30.17 Aligned_cols=40 Identities=15% Similarity=0.377 Sum_probs=35.7
Q ss_pred HHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCC
Q psy16078 16 FRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDE 57 (111)
Q Consensus 16 FRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~ 57 (111)
+++|+.+..|=.-||.++-.+. ..+|.||.+|+-.+|-..
T Consensus 6 ~~~y~~~~~~~~~l~ea~~~~v--~~~~~d~~~~l~~~f~~~ 45 (518)
T PTZ00378 6 WKRYDDEFKLSGILTEAARSCV--DAHPARPKEYLAAYFREK 45 (518)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHhh
Confidence 6789999999999999999997 678999999999998553
No 302
>PRK14146 heat shock protein GrpE; Provisional
Probab=45.95 E-value=51 Score=25.90 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+++.|+.++++++.++-++..+.+.++.+..+
T Consensus 61 ~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~k 93 (215)
T PRK14146 61 KELDNAKKEIESLKDSWARERAEFQNFKRRSAQ 93 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888777643
No 303
>PHA03162 hypothetical protein; Provisional
Probab=45.83 E-value=31 Score=25.71 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 70 DLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..++|..++..|+-||..|+.+|.+-
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999554
No 304
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=45.78 E-value=51 Score=22.84 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+-.+-++..++.|+..++.|++.+..++.++...
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 87 EAIEFLDKKIEELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666544
No 305
>PLN02939 transferase, transferring glycosyl groups
Probab=45.76 E-value=35 Score=32.68 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHhcChHH-----HHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 10 EKNKEAFRRYLEQSGVVD-----AITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 10 dsKrEeFRkYLE~~GVlD-----aLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
+..-|.||+=|-..||.+ .|++-|-.|-||+--=.+.++|++..|....-+.+-+-.|.+|..-|..-+.+|+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (977)
T PLN02939 200 EEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESK 279 (977)
T ss_pred HHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788777777664 499999999999999999999999999886556666777888888888777777777
Q ss_pred HHHHHHHhccccc
Q psy16078 85 VANLKERLSKYEV 97 (111)
Q Consensus 85 ~~eL~~~l~~~e~ 97 (111)
+..-++-+-++-|
T Consensus 280 ~~~~~~~~~~~~~ 292 (977)
T PLN02939 280 FIVAQEDVSKLSP 292 (977)
T ss_pred HHhhhhhhhhccc
Confidence 7655554444433
No 306
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.69 E-value=5.3 Score=26.69 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
++.-..+++.|+.++...+.-+..++.+
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555544444444443
No 307
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=45.66 E-value=42 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+..+..+|..|..-+..+.+++.+|+.+|..|+.
T Consensus 50 m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 50 MAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555556666666666666553
No 308
>KOG3156|consensus
Probab=45.63 E-value=1.3e+02 Score=24.14 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCCCCCCHHHHH----HHhhCCCCCC-------------------HHHHHHHHHHHH--------HHHHH
Q psy16078 29 ITSALVMLYSIEEKPEDPLDFI----RRNLGDERPE-------------------VAEYEAVLQDLD--------EAKAE 77 (111)
Q Consensus 29 LTkvLV~LYEe~ekP~dalefi----r~~Lg~~~p~-------------------~~e~e~Lk~E~~--------~lk~~ 77 (111)
.|.+||...|+--=|..--+=| ...++.. ++ ..++.+++.++. .++.+
T Consensus 46 dt~alvr~LE~~Gf~~kQAETIt~aiT~v~nds-l~~vsk~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e 124 (220)
T KOG3156|consen 46 DTHALVRSLEAAGFDSKQAETITSAITTVLNDS-LETVSKELVTKAQQEKVSYQQKVDFAKIRSELVSIERSEFANLRAE 124 (220)
T ss_pred hHHHHHHHHHHcCCChhhHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888877775544433 3333332 11 244556665554 44555
Q ss_pred HHHHHHHHHHHHHHhc
Q psy16078 78 LDQLTATVANLKERLS 93 (111)
Q Consensus 78 i~~L~~e~~eL~~~l~ 93 (111)
++.|+.+++.++.+|.
T Consensus 125 ~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 125 NEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555553
No 309
>PRK07857 hypothetical protein; Provisional
Probab=45.60 E-value=67 Score=22.82 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
+..+++.++.+++++=.+|-.|-.+-..+..++.++....
T Consensus 26 ~~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~ 65 (106)
T PRK07857 26 SDAEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMAS 65 (106)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999888888888877654
No 310
>KOG2536|consensus
Probab=45.52 E-value=21 Score=29.32 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHh
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLY 37 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LY 37 (111)
=|+.|-+|||.-||=+.|+..|..--
T Consensus 217 Lqd~fh~fLEeRGI~esl~~FL~~ym 242 (263)
T KOG2536|consen 217 LQDSFHRFLEERGIKESLASFLHAYM 242 (263)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 37889999999999999999887753
No 311
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=45.51 E-value=1.1e+02 Score=28.26 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=42.4
Q ss_pred HHHHhcChHHHHHHH------HHHHhcCCCCCCCHHHHHHHhhCCCC-------------CCHHHHHHHHHHHHHHHHHH
Q psy16078 18 RYLEQSGVVDAITSA------LVMLYSIEEKPEDPLDFIRRNLGDER-------------PEVAEYEAVLQDLDEAKAEL 78 (111)
Q Consensus 18 kYLE~~GVlDaLTkv------LV~LYEe~ekP~dalefir~~Lg~~~-------------p~~~e~e~Lk~E~~~lk~~i 78 (111)
+..++..++..|-++ .+.+-.....+.+|...|...|+-.. =+..++++|+.|.++|++++
T Consensus 364 k~~~r~~il~g~~~~~~~id~~i~iir~~~~~~~~~~~l~~~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i 443 (738)
T TIGR01061 364 KASKRLEIVEGLIKAISIIDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKI 443 (738)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555565555555442 23444456666788888888766521 12466778888888888888
Q ss_pred HHHHH
Q psy16078 79 DQLTA 83 (111)
Q Consensus 79 ~~L~~ 83 (111)
+.|+.
T Consensus 444 ~~l~~ 448 (738)
T TIGR01061 444 ISLEQ 448 (738)
T ss_pred HHHHH
Confidence 77776
No 312
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=45.35 E-value=1.1e+02 Score=28.25 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHHHhcChHHHHHH------HHHHHhcCCCCCCCHHHHHHHhhCCCC-------------CCHHHHHHHHHHHHHHHHHH
Q psy16078 18 RYLEQSGVVDAITS------ALVMLYSIEEKPEDPLDFIRRNLGDER-------------PEVAEYEAVLQDLDEAKAEL 78 (111)
Q Consensus 18 kYLE~~GVlDaLTk------vLV~LYEe~ekP~dalefir~~Lg~~~-------------p~~~e~e~Lk~E~~~lk~~i 78 (111)
+..++..+++.|-+ ..+.+-.......++...|...++-.. =+..++++|+.|.++|++++
T Consensus 364 ~~~~~~~~~~g~~~~~~~~d~vi~~ir~~~~~~~~~~~L~~~~~~~~~qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei 443 (800)
T TIGR01063 364 KAEERAHILEGLLIALDNIDEVIALIRASQNTEEAKTRLVERFSLSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELI 443 (800)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 233344455566788888888876521 12466788888888888888
Q ss_pred HHHHHHH
Q psy16078 79 DQLTATV 85 (111)
Q Consensus 79 ~~L~~e~ 85 (111)
++|+.-+
T Consensus 444 ~~l~~iL 450 (800)
T TIGR01063 444 ADLEDIL 450 (800)
T ss_pred HHHHHHH
Confidence 7776543
No 313
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.23 E-value=1.4e+02 Score=25.56 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
+.-+.+.++.. ..++..+..+..++..++.+|++++..|+.+|..+.+.
T Consensus 126 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 126 LKEWFQAFDFN---GSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33344444432 35677888888888899999999999999988877664
No 314
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=45.22 E-value=29 Score=27.33 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
+.|..+++.+..+|..|+.++.+|
T Consensus 128 e~Lh~~ie~~~eEi~~lk~en~~L 151 (200)
T PF07412_consen 128 EKLHKEIEQKDEEIAKLKEENEEL 151 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 315
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=45.17 E-value=49 Score=25.31 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.++..++..+..++.+++.+++++...+.++..
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555543
No 316
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=45.07 E-value=11 Score=28.85 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+|-+.|+.+++.|+.++..|++++ .++.++.
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 455667777777777777777766 4554443
No 317
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=44.99 E-value=62 Score=25.53 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=42.8
Q ss_pred cChHHHHHHHHHHH-hcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q psy16078 23 SGVVDAITSALVML-YSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAK 75 (111)
Q Consensus 23 ~GVlDaLTkvLV~L-YEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk 75 (111)
.+..+.|.++|..+ |=.|++|...+.-+|..|+...++..|+.-|+-=+.++.
T Consensus 185 ~~l~~~l~~~l~~i~f~~~~~~~~~~~~lrrll~Ra~l~~~E~~~lrg~~~~~~ 238 (245)
T PRK15114 185 ERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGILASIE 238 (245)
T ss_pred HHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 34566777888777 446788888888899999999999999998887777664
No 318
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=44.67 E-value=71 Score=20.48 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+++.|- +++|..+|..|+.+|.-+++.+.+
T Consensus 16 ~dLs~lS--v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 16 EDLSLLS--VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CCchhcC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455553 678999999999999988887754
No 319
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=44.61 E-value=69 Score=21.57 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+..+..|-.|++-+..+|..|++.+.+|..++-
T Consensus 53 p~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 53 PKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999988773
No 320
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=44.49 E-value=75 Score=21.57 Aligned_cols=29 Identities=28% Similarity=0.325 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..++++.+..+++++.++..|..+..++.
T Consensus 7 ~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 7 RAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999998888766544
No 321
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=44.43 E-value=79 Score=27.09 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=27.7
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
++|..+++..+.-....+.|...+..+..+++.++.+++.+..++
T Consensus 392 ~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl 436 (462)
T PRK08032 392 TNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARY 436 (462)
T ss_pred HHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444344556677777777777777777776665554
No 322
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=44.31 E-value=99 Score=20.93 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 24 GVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 24 GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+-||.|-+.+-.-.+...+....-+=| +.|+. +-..|-++++....+.+.|+.-+.++..+|.
T Consensus 15 ~aid~LE~~v~~r~~~~~~~~~~e~ei-~~l~~------dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 15 AAIDRLEKAVDRRLERDRKRDELEEEI-QRLDA------DRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHh------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 357888887777776666653333333 44443 4466777777777777778777777777764
No 323
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=44.29 E-value=75 Score=21.86 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
..++++|..|+++++.+...-+.+++..+-+
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vr 59 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVR 59 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999998888865544
No 324
>PHA02047 phage lambda Rz1-like protein
Probab=44.26 E-value=77 Score=22.58 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.0
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 52 RNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 52 ~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+.+|. ...+.+.|.+.++.++.++..+++....|..+-
T Consensus 27 r~~g~---~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~ka 64 (101)
T PHA02047 27 RALGI---AHEEAKRQTARLEALEVRYATLQRHVQAVEART 64 (101)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 367788888888888888888888888777653
No 325
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=44.19 E-value=60 Score=21.43 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
|+.++..|+.++..+++.+.++...+
T Consensus 48 LKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666555544
No 326
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.18 E-value=83 Score=25.31 Aligned_cols=86 Identities=23% Similarity=0.299 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHhcCh-HHHHHHHHHHHhcCCCCCCCH--------------HHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q psy16078 10 EKNKEAFRRYLEQSGV-VDAITSALVMLYSIEEKPEDP--------------LDFIRRNLGDERPEVAEYEAVLQDLDEA 74 (111)
Q Consensus 10 dsKrEeFRkYLE~~GV-lDaLTkvLV~LYEe~ekP~da--------------lefir~~Lg~~~p~~~e~e~Lk~E~~~l 74 (111)
+.++..|+++|++.-. ++++.+.++.+-.+-+.=.+= ++=.+..|++. .+..++.+|..|.+.+
T Consensus 23 ~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v-~~~~e~~aL~~E~~~a 101 (239)
T COG1579 23 EPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV-KDERELRALNIEIQIA 101 (239)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 4456689999988754 677888888774433221111 11133345443 5567888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q psy16078 75 KAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 75 k~~i~~L~~e~~eL~~~l~~~e 96 (111)
+.+...|..++.+|...+..++
T Consensus 102 k~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777777666655443
No 327
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=44.07 E-value=2.1e+02 Score=25.76 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=42.9
Q ss_pred HhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 21 EQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 21 E~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+....-+.+-+-|+.=|+.-+|=.+=-.|++..|-. .-.|.+-+.|++..-.....|+++|+.+.++|.
T Consensus 461 ~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEI----v~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 461 EEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEI----VKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566677888888888878888888887755 344444444555555555555555555555553
No 328
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.97 E-value=52 Score=30.21 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
++.++...++.|+.+|..|+.++++++..+..|+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~ 456 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLE 456 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444554444444443
No 329
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.83 E-value=53 Score=25.84 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+..++..++.|+.++..|+..+..|..++
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 33333333333333333333333333333
No 330
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=43.83 E-value=49 Score=26.05 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+.+..++..+..++..|+++|.+|+.+|..+.
T Consensus 33 D~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~ 64 (212)
T COG3599 33 DDVIDDYEQLLDENEDLEDEIDELKEELKEAA 64 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555555554443
No 331
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=43.74 E-value=32 Score=22.92 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+++.++.++-..|.+++..|..++-.+|.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et 30 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKET 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666677777777666655554
No 332
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.65 E-value=84 Score=25.91 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
++...++.++.++..++....+++.+++.++
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443333
No 333
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=43.52 E-value=34 Score=30.33 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
--.+++.|++++..|+++..+|+++|..-..
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~ 53 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPA 53 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3457889999999999999999999875443
No 334
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=43.46 E-value=1.2e+02 Score=24.58 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHh
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLY 37 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LY 37 (111)
+=..||.||+.++-.|..+.-++..+
T Consensus 134 ~~~k~~~~L~~A~~sD~~l~~~~~~~ 159 (342)
T cd08915 134 KVTKLRGYLEQASNSDNEVLQCYESI 159 (342)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45679999999999999887777654
No 335
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.44 E-value=36 Score=30.09 Aligned_cols=17 Identities=6% Similarity=0.044 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhccc
Q psy16078 79 DQLTATVANLKERLSKY 95 (111)
Q Consensus 79 ~~L~~e~~eL~~~l~~~ 95 (111)
..++++|++|.+.+.++
T Consensus 100 ~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 100 GDDQRRIEKLGQDNAAL 116 (475)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 336
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=43.28 E-value=25 Score=21.68 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=41.8
Q ss_pred CCChhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCC--CHHHHHHHHHHHHHHHHHH
Q psy16078 7 TPNEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERP--EVAEYEAVLQDLDEAKAEL 78 (111)
Q Consensus 7 ~~~dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p--~~~e~e~Lk~E~~~lk~~i 78 (111)
-+.+.|..--+.||....-+..+.+-+ .--|..-..+++++.++... .......+..++.+|+.++
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~------gi~~~~l~~W~~~~~~~~~~~~~~~~~~~~~~e~~~L~~~~ 74 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREY------GISPSTLYNWRKQYREGQSAFPAKFKPKELEKEIRELRREL 74 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHH------TS-HHHHHHHHHHHH--STT-SSSSHHHHTHCHHHHHCH-G
T ss_pred CCHHHHHHHHHHHHHCCCceEeeeccc------ccccccccHHHHHHhcCCCCCCcccccHhHHHHHHHHHHHh
Confidence 357888888999999998888888865 33567777889999754332 2224555555555555544
No 337
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=43.12 E-value=59 Score=24.93 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+..|..+++.++..+..|+..+..|+.++.
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~ 130 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLA 130 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 338
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=43.08 E-value=22 Score=22.92 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcChHHHHHHH
Q psy16078 13 KEAFRRYLEQSGVVDAITSA 32 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTkv 32 (111)
..-|.+.|.+.||.++|-+.
T Consensus 33 ~~~f~~~L~~~Gv~~~L~~~ 52 (69)
T TIGR03595 33 LRRFARKLKKLGVEDALRKA 52 (69)
T ss_pred HHHHHHHHHHCCHHHHHHHc
Confidence 45799999999999999763
No 339
>KOG3119|consensus
Probab=43.05 E-value=39 Score=27.13 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 68 LQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+...++++.++..|+++++.|+.+++++.
T Consensus 214 k~~~~e~~~r~~~leken~~lr~~v~~l~ 242 (269)
T KOG3119|consen 214 KQKEDEMAHRVAELEKENEALRTQVEQLK 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555555555443
No 340
>PRK14145 heat shock protein GrpE; Provisional
Probab=42.91 E-value=63 Score=25.19 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q psy16078 60 EVAEYEAVLQDLDEAKAELD-------QLTATVANLKERL 92 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~-------~L~~e~~eL~~~l 92 (111)
...+++.|+.++..++.++. ++..+.+.++.+.
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~ 82 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRT 82 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444 4455555555444
No 341
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.82 E-value=34 Score=29.06 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHh-------hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 13 KEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRN-------LGDERPEVAEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~-------Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
.+.+++=|.+-|+ +....-++.||++--+=-.-++-++.. +|......++.++|+.+..++++++..|++++
T Consensus 11 ~~~v~~~l~~R~~-~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 11 PEAVKEALAKRGF-PLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL 89 (425)
T ss_pred HHHHHHHHHhcCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666664 222445556665433322223332222 22211122356778888888888888888888
Q ss_pred HHHHHHhccc
Q psy16078 86 ANLKERLSKY 95 (111)
Q Consensus 86 ~eL~~~l~~~ 95 (111)
.++..++..+
T Consensus 90 ~~~~~~~~~~ 99 (425)
T PRK05431 90 DELEAELEEL 99 (425)
T ss_pred HHHHHHHHHH
Confidence 8888777554
No 342
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.78 E-value=1.1e+02 Score=20.96 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
...|....+++.+++++|+.....|..-+..+..
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (123)
T cd04770 81 RALLEEKLAEVEAKIAELQALRAELAGLLSACDG 114 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4667888888888888888888877776655544
No 343
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=42.55 E-value=92 Score=22.36 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
..|+.+++..-+++.+|+.++.++...|
T Consensus 47 ~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 47 QSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 344
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=42.44 E-value=56 Score=25.71 Aligned_cols=31 Identities=19% Similarity=0.515 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
..+|+.+..++.+|+++|..|.+++......
T Consensus 36 ~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 36 IDDYEQLLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3788999999999999999999999887765
No 345
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=42.42 E-value=54 Score=25.22 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccccccCCC
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKER-------LSKYEVVESDQ 102 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~-------l~~~e~~~~~~ 102 (111)
...|..|+.++.+++.++++|..++.-|+.. |.+|+-.+++-
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~L 59 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAEL 59 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 3568889999999999999999998877642 55666555443
No 346
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=42.21 E-value=72 Score=23.82 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+++.|+.|...++.+|..-++.+.+|..|...
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va 33 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQVA 33 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888877777777655443
No 347
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=42.20 E-value=26 Score=22.64 Aligned_cols=30 Identities=37% Similarity=0.393 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
|+..+-.|-++||.++-.|+.++.-++..+
T Consensus 4 ELr~VL~ERNeLK~~v~~leEEL~~yk~~~ 33 (60)
T PF11461_consen 4 ELREVLQERNELKARVFLLEEELAYYKSEL 33 (60)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444455555555555555555555555433
No 348
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=42.16 E-value=51 Score=21.74 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=35.1
Q ss_pred CCCHHHHHHHhhCCCCC----CHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 43 PEDPLDFIRRNLGDERP----EVAEYEAV----------------LQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 43 P~dalefir~~Lg~~~p----~~~e~e~L----------------k~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
|+..++-|.+.+++.-| ...|++.- +.|.+-.+.-+..+..+++.|.++|..+|
T Consensus 4 ~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 4 PNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred chhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666555432 33444432 45666777778888888888888888776
No 349
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=42.08 E-value=82 Score=20.34 Aligned_cols=31 Identities=35% Similarity=0.385 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
+|+.+.-++-++|+.++-.|+..|+.|.+..
T Consensus 3 ~ELr~VL~ERNeLK~~v~~leEEL~~yk~~~ 33 (60)
T PF11461_consen 3 QELREVLQERNELKARVFLLEEELAYYKSEL 33 (60)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5677888899999999999999999998863
No 350
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=42.06 E-value=29 Score=28.56 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=47.0
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQPIS 105 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~~~~~ 105 (111)
.|++..||. ..||..|=.|.-+|..+++.|++-+..+-.--..|+.+.=|+|..
T Consensus 11 ~~~qE~lG~----v~diSeLP~eY~~LE~k~D~l~~~~~~~L~vt~~ye~esYDYP~n 64 (289)
T PF10455_consen 11 QYVQEQLGQ----VDDISELPQEYLELEKKVDALKKVYKRLLKVTKTYENESYDYPPN 64 (289)
T ss_pred HHHHHHhCC----ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhHhcccCCCCCChh
Confidence 589999999 448999999999999999999999998888779999887787764
No 351
>PRK11677 hypothetical protein; Provisional
Probab=42.06 E-value=1e+02 Score=22.61 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=21.6
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 46 PLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
.+-|+--.++. +..-+...|++++++.+.++++-++++
T Consensus 15 iiG~~~~R~~~--~~~~~q~~le~eLe~~k~ele~YkqeV 52 (134)
T PRK11677 15 IIGAVAMRFGN--RKLRQQQALQYELEKNKAELEEYRQEL 52 (134)
T ss_pred HHHHHHHhhcc--chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666 544455556666666665555555544
No 352
>KOG4119|consensus
Probab=42.00 E-value=58 Score=21.73 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+..+.+++..+++|+.+...=...+..+.++|.+|--
T Consensus 6 ~~~~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E 42 (71)
T KOG4119|consen 6 NSKKPQMKKEVEQLKLEANIERIKVSKAAAELLEYCE 42 (71)
T ss_pred ccchHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Confidence 4556777888888877776666666667777766644
No 353
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=41.95 E-value=1.1e+02 Score=20.75 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.-..-+....+++.+++..|+.....|...+.
T Consensus 75 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 75 ELRKLLREKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455667777777777777777666665554
No 354
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.79 E-value=78 Score=23.77 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
.+..|+.++..|+.++..|..++
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 355
>PRK10722 hypothetical protein; Provisional
Probab=41.71 E-value=64 Score=26.29 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
.+..+++.|++++.+|+.+++.+.++++.|.
T Consensus 173 ~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 173 SSDSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888888887776
No 356
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=41.66 E-value=73 Score=20.28 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+.+-++.|.+++...+++....+.++++++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555555555555555543
No 357
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=41.66 E-value=24 Score=29.88 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.5
Q ss_pred HHHHHHhcChHHHHHHHHHHH
Q psy16078 16 FRRYLEQSGVVDAITSALVML 36 (111)
Q Consensus 16 FRkYLE~~GVlDaLTkvLV~L 36 (111)
|+++|+.+|+++.|+..+.++
T Consensus 266 Fk~~l~~tG~~~~l~~~l~~~ 286 (385)
T PF04165_consen 266 FKEILEATGVVEELPEFLSSL 286 (385)
T ss_pred HHHHHHHcChHHHHHHHHHhC
Confidence 889999999999999999885
No 358
>PRK14140 heat shock protein GrpE; Provisional
Probab=41.63 E-value=64 Score=25.00 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
....++.|..+++.+++++.+|+....-+.+.++.|
T Consensus 35 ~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~ 70 (191)
T PRK14140 35 EAELLDEEQAKIAELEAKLDELEERYLRLQADFENY 70 (191)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777776666666655444
No 359
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.46 E-value=1.1e+02 Score=20.76 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
|-.+-+..|....+.+..++..|.+++..+..++..+.
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888888899999999999999888887654
No 360
>PRK14154 heat shock protein GrpE; Provisional
Probab=41.41 E-value=50 Score=26.02 Aligned_cols=36 Identities=8% Similarity=0.173 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
...++.|..+++++++++.+|+....-+.+.++.|.
T Consensus 51 ~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyR 86 (208)
T PRK14154 51 FPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLR 86 (208)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999888888887776653
No 361
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=41.41 E-value=1.1e+02 Score=25.19 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=43.3
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 14 EAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 14 EeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~ 82 (111)
.+|+.||..-+++|+..-=+..=|++-.- .+.||+++..- +..+..+.|.+++.++...-..++
T Consensus 19 ~et~~~~t~l~~iD~k~~d~~k~l~q~~s---i~k~~~~~~~~--t~~e~ed~l~k~i~Ell~~a~~~~ 82 (271)
T COG5034 19 SETDIRFTELSEIDAKVCDIIKNLRQMIS---ILKKIIDLDSQ--TYEEVEDGLLKEIRELLLKAIYIQ 82 (271)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHH---HHHHHhhcccC--ccccchhHHHHHHHHHHHHHHHHH
Confidence 57899999999999987655555544332 77788877655 555666777777777665444333
No 362
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=41.37 E-value=87 Score=20.61 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+..|+.-....+++...|..++..|..++..+
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777777777777654
No 363
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.35 E-value=48 Score=30.34 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
..++.+|++++++|+.++..|.+....=+.
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq 488 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQ 488 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888877777655444333
No 364
>PRK14148 heat shock protein GrpE; Provisional
Probab=41.28 E-value=68 Score=24.93 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+++.|..+++.|+.++++|+....-+.+.++
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~e 71 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEME 71 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444444444433
No 365
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=41.28 E-value=49 Score=23.68 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 68 LQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..+...++.++..|++||+-|+-+++
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999998887765
No 366
>PLN02590 probable tyrosine decarboxylase
Probab=41.14 E-value=99 Score=27.33 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=40.0
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhc----CCCCCCCHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q psy16078 14 EAFRRYLEQSGVVDAITSALVMLYS----IEEKPEDPLDFIRRNLGDERPE-VAEYEAVLQDL 71 (111)
Q Consensus 14 EeFRkYLE~~GVlDaLTkvLV~LYE----e~ekP~dalefir~~Lg~~~p~-~~e~e~Lk~E~ 71 (111)
++||..+.+ ++|.+.+.+-.+.+ .|--|.-..+|+++.|...-|+ ....+.+..++
T Consensus 57 ~~~r~~~~~--~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~ 117 (539)
T PLN02590 57 ELLREQGHI--MVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDV 117 (539)
T ss_pred HHHHHHHHH--HHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 799999976 89999999988876 3554555569999999886654 23444444333
No 367
>PRK03430 hypothetical protein; Validated
Probab=41.12 E-value=24 Score=26.62 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHhcChHHHHHHHHH
Q psy16078 10 EKNKEAFRRYLEQSGVVDAITSALV 34 (111)
Q Consensus 10 dsKrEeFRkYLE~~GVlDaLTkvLV 34 (111)
+..-.-|--|||+.|||++-|+=+|
T Consensus 82 ~~e~rGFL~fLEq~gvL~~~~RE~V 106 (157)
T PRK03430 82 DASCRGFLLFLEQIQVLNLETREMV 106 (157)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4456789999999999999998443
No 368
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=40.97 E-value=18 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=13.6
Q ss_pred HHHHhcChHHHHHHH
Q psy16078 18 RYLEQSGVVDAITSA 32 (111)
Q Consensus 18 kYLE~~GVlDaLTkv 32 (111)
.||.++|+++.|.++
T Consensus 33 ~yl~~sG~i~~lr~~ 47 (77)
T PF10911_consen 33 AYLMASGIISALRKQ 47 (77)
T ss_pred HHHHHhhhHHHHHHc
Confidence 699999999999975
No 369
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=40.89 E-value=58 Score=27.01 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
..+.+.+.+..+++++.+|+.|+..+..++..+..+...+
T Consensus 79 ~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~ 118 (301)
T PF06120_consen 79 AEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE 118 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 3578999999999999999999999998888877765544
No 370
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=40.86 E-value=1.4e+02 Score=23.42 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCh-----HHHHHHHHHHHhcCCCCCCCHHHHHHHhhC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 14 EAFRRYLEQSGV-----VDAITSALVMLYSIEEKPEDPLDFIRRNLG----DERPEVAEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 14 EeFRkYLE~~GV-----lDaLTkvLV~LYEe~ekP~dalefir~~Lg----~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
+.-.+||+.-.| |..+.+.+++|=+-=+.=+-.++=+-+.|| .......++.+|++.+..|-.++..+-.-
T Consensus 57 E~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 57 DTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566766554 667777777773322222222222344566 33335677888888888887777766655
Q ss_pred HH
Q psy16078 85 VA 86 (111)
Q Consensus 85 ~~ 86 (111)
++
T Consensus 137 lE 138 (189)
T TIGR02132 137 LE 138 (189)
T ss_pred Hh
Confidence 55
No 371
>PF04712 Radial_spoke: Radial spokehead-like protein
Probab=40.72 E-value=49 Score=28.95 Aligned_cols=37 Identities=22% Similarity=0.555 Sum_probs=27.8
Q ss_pred HHHHHHHH------hcChHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy16078 14 EAFRRYLE------QSGVVDAITSALVMLYSIEEKPEDPLDFIRR 52 (111)
Q Consensus 14 EeFRkYLE------~~GVlDaLTkvLV~LYEe~ekP~dalefir~ 52 (111)
..-+.||- ..-|-|+|++||-.+- .++|.||++++-.
T Consensus 6 ~~AKayL~k~s~~~G~sLYdHL~~vL~kIL--~ErP~na~d~fE~ 48 (491)
T PF04712_consen 6 QNAKAYLQKKSNKSGDSLYDHLSDVLTKIL--DERPENAVDIFEE 48 (491)
T ss_pred HHHHHHHHhccCCCCCcHHHHHHHHHHHHH--HhCCCcHHHHHHH
Confidence 34456772 2358899999999996 7899999998543
No 372
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.69 E-value=61 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=13.4
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy16078 14 EAFRRYLEQSGVVDAITSALVMLYSIE 40 (111)
Q Consensus 14 EeFRkYLE~~GVlDaLTkvLV~LYEe~ 40 (111)
-.||.|+ +++|-.+.-.|...|
T Consensus 121 ~~~RS~y-----Le~Lc~IIqeLq~t~ 142 (269)
T PF05278_consen 121 QQFRSYY-----LECLCDIIQELQSTP 142 (269)
T ss_pred HHHHHHH-----HHHHHHHHHHHhcCc
Confidence 4566664 667777777775433
No 373
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.50 E-value=90 Score=23.17 Aligned_cols=35 Identities=14% Similarity=0.389 Sum_probs=21.8
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
+|.-+.. -...++..|+.+++.|+.+++.|+.++.
T Consensus 63 Lr~el~~--~~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 63 LRSELQN--SRKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 3456677777777777777776666433
No 374
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.46 E-value=1.4e+02 Score=21.41 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCCC-------------CCCHHHHHHHhhCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 26 VDAITSALVMLYSIEEK-------------PEDPLDFIRRNLGDERPE---VAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 26 lDaLTkvLV~LYEe~ek-------------P~dalefir~~Lg~~~p~---~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
|..|+.-|-.|...... |.+.++||=+ |..|+ .+=++....+|+.++-|++.+++=-+.|.
T Consensus 35 i~~lv~~L~~l~~~~~~~~~~~~~~~~~~IP~evl~yID~---GrNPDiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~ 111 (128)
T PF09748_consen 35 INQLVTSLQELDKLAQQTNDPDSPLQDIQIPLEVLEYIDD---GRNPDIYTREFVELVRRENQYVKGKMEAFKSFRDVLA 111 (128)
T ss_pred HHHHHHHHHHHHHHhcccCCCCcccccCCCCHHHHHHHhC---CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44566666666554444 4455666654 44564 57799999999999999999999999999
Q ss_pred HHhcccccc
Q psy16078 90 ERLSKYEVV 98 (111)
Q Consensus 90 ~~l~~~e~~ 98 (111)
.+|.+-=|+
T Consensus 112 ~el~~~fPe 120 (128)
T PF09748_consen 112 EELASAFPE 120 (128)
T ss_pred HHHHHHChH
Confidence 988776554
No 375
>KOG0483|consensus
Probab=40.43 E-value=53 Score=25.65 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..|++-|+...+.|+.+...|+.++.+|.+.+.
T Consensus 111 E~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 111 EKDYESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 366778888888888888888888877777765
No 376
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.34 E-value=71 Score=25.17 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+++.|+.++++++.++-++.++...++.+..
T Consensus 68 ~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 68 EENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666676666666654
No 377
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=40.34 E-value=40 Score=27.35 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
.+.+++.+...+++++..+++++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 14 EKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 378
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.90 E-value=1.2e+02 Score=20.71 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.-.+.|....+++..++.+|+.....|...+
T Consensus 81 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~l 111 (112)
T cd01282 81 DLLAVLRRELARIDRQIADLTRSRDRLDAYL 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356677777777777777777766665443
No 379
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=39.87 E-value=1.4e+02 Score=21.51 Aligned_cols=70 Identities=11% Similarity=0.268 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEV----AEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~----~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
..++|..+.. .|++-||.- .--+++|-+.|=+..-+. ..+..|..||..+.++..+..++-++
T Consensus 63 ~~~~~~~~~~------elA~dIi~k-------akqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ 129 (144)
T PF11221_consen 63 PPEEFEENIK------ELATDIIRK-------AKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEE 129 (144)
T ss_dssp -HHHHHHHHH------HHHHHHHHH-------HHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHH------HHHHHHHHH-------HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776653 355544443 335788888886643322 24777777777777776666666666
Q ss_pred HHHHhcc
Q psy16078 88 LKERLSK 94 (111)
Q Consensus 88 L~~~l~~ 94 (111)
+-.++..
T Consensus 130 ll~~v~~ 136 (144)
T PF11221_consen 130 LLKQVQE 136 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 380
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=39.83 E-value=51 Score=23.73 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=24.5
Q ss_pred CHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 45 DPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 45 dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
.-++=+-+.++. +...+++.|+.+++.|+.++..|+.++
T Consensus 68 r~i~~ml~~~~~--~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 68 RKIEEMLSDLEV--ARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHhhccc--cccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444553 556677777777777777777776654
No 381
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.46 E-value=98 Score=26.98 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcccccc
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKA-------ELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~-------~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.-|++++..-.-++..++.+...+..+++ .++.+....++++.+|..++..
T Consensus 287 ~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~ 344 (563)
T TIGR00634 287 RELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS 344 (563)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 33555555443445555555555555444 3445555555555555555443
No 382
>PRK06835 DNA replication protein DnaC; Validated
Probab=39.39 E-value=85 Score=25.83 Aligned_cols=39 Identities=8% Similarity=0.177 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
+...+..|++.......++.|+.++.+|+.+..+|-..+
T Consensus 50 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~~~ 88 (329)
T PRK06835 50 IKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLVSN 88 (329)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444666777633347888999999999988887776654
No 383
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=39.19 E-value=1e+02 Score=19.60 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=6.0
Q ss_pred CHHHHHHHhhCC
Q psy16078 45 DPLDFIRRNLGD 56 (111)
Q Consensus 45 dalefir~~Lg~ 56 (111)
||=.|+++.|..
T Consensus 7 d~~~~~~~~l~~ 18 (87)
T PF08700_consen 7 DVDEYFKDLLKN 18 (87)
T ss_pred CHHHHHHHHHhh
Confidence 444555555544
No 384
>PLN02880 tyrosine decarboxylase
Probab=39.12 E-value=92 Score=26.81 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=37.8
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCC
Q psy16078 14 EAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPE 60 (111)
Q Consensus 14 EeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~ 60 (111)
++||+.+.+ ++|.+.+.+-.+-+.|.-|....++++..+....|+
T Consensus 13 ~~~~~~~~~--~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~ 57 (490)
T PLN02880 13 EQLRECGHR--MVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPN 57 (490)
T ss_pred HHHHHHHHH--HHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCC
Confidence 689999966 899999999888877777777779999999886553
No 385
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=39.04 E-value=1.3e+02 Score=20.89 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
...|....+++.+++++|+.....|...+..+.
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (127)
T TIGR02044 81 KARTLEKVAEIERKISELQSMRDQLEALAQACP 113 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455777788888888888888888877776553
No 386
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.02 E-value=75 Score=24.16 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..++..|+.++.+|..++..|+..++.+..+..
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777666666655443
No 387
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=38.99 E-value=1.3e+02 Score=20.65 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.+.|....+++.+++.+|+...+.|...+..++
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (116)
T cd04769 81 QQALEDKKQEIRAQITELQQLLARLDAFEASLK 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466778888888888888888887777666553
No 388
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.94 E-value=69 Score=24.04 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+.++.+..+|..++..|+.++..|..++..
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666677777777777777776655543
No 389
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.92 E-value=69 Score=26.83 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
..-++.|+..|++|+.+|.+|+.++.
T Consensus 277 s~l~dQLK~qNQEL~ski~ELE~rLq 302 (307)
T PF10481_consen 277 SQLLDQLKAQNQELRSKINELELRLQ 302 (307)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45688999999999999988877654
No 390
>KOG4797|consensus
Probab=38.88 E-value=71 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+.+.|++-||.+|.+|..++..|.+
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777666666654
No 391
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.88 E-value=78 Score=25.32 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=14.9
Q ss_pred HHHhcChHHHHHHHHHHHhcC
Q psy16078 19 YLEQSGVVDAITSALVMLYSI 39 (111)
Q Consensus 19 YLE~~GVlDaLTkvLV~LYEe 39 (111)
+=+..-++..|-.=|..+...
T Consensus 15 ~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 15 LEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 345566778888888888755
No 392
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=38.86 E-value=99 Score=19.39 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=26.7
Q ss_pred HHHHHHhhCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 47 LDFIRRNLGDER----PEVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 47 lefir~~Lg~~~----p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
++-+...|+..+ -+.+-|+.=+..++++..+++.|...+..|+
T Consensus 20 i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 20 IERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555566532 1235577777788888888888877777663
No 393
>KOG4098|consensus
Probab=38.67 E-value=78 Score=23.74 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
..+..|+.+++++.++|.+|+-+..+-+-.+..+.+-+
T Consensus 22 a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~d 59 (140)
T KOG4098|consen 22 AKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLD 59 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 56899999999999999999999888887777766544
No 394
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=38.35 E-value=26 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=19.1
Q ss_pred HHHHHHHhcCh----------HHHHHHHHHHHhc
Q psy16078 15 AFRRYLEQSGV----------VDAITSALVMLYS 38 (111)
Q Consensus 15 eFRkYLE~~GV----------lDaLTkvLV~LYE 38 (111)
++|..|+++|+ ++-||+|.---||
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L~~~VM~eAYE 49 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQLLTKVMNEAYE 49 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 57889999995 6778888777775
No 395
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=38.27 E-value=72 Score=26.90 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.++..|+.++..+..++..+++++..++.++.++...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666666777777777777777777777766543
No 396
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=38.14 E-value=1.1e+02 Score=27.56 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 26 VDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 26 lDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+..||+.|++|-.- -+++.++-|-. ...++...+....-+|+.+++.-+.+++.|+..++..
T Consensus 426 l~~Lt~~l~~l~~~------~i~~~~~~l~~--dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~le~~ 487 (543)
T COG1315 426 LKKLTKLLVALVKV------KIESKKNILPP--DKESLLTAVNNTKITLRNSIEKIKAELEGLQEELEVV 487 (543)
T ss_pred HHHHHHHHHHHHHH------HHHhhcCCCCC--CcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 56688888888542 34555555544 2247777777888888999999999999998888654
No 397
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=38.11 E-value=47 Score=28.56 Aligned_cols=24 Identities=21% Similarity=0.381 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
...+.+|++++..||.+|..|++.
T Consensus 41 ~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 41 QQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444
No 398
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.03 E-value=63 Score=25.97 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+.++..++++++.++..++.++.++..++...
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555443
No 399
>PRK14158 heat shock protein GrpE; Provisional
Probab=37.95 E-value=93 Score=24.13 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+++.|..++++++.++.+|+.+..-+.+.++.|
T Consensus 39 ~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~ 73 (194)
T PRK14158 39 ADRIKELEEALAAKEAEAAANWDKYLRERADLENY 73 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776666666655544
No 400
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=37.94 E-value=77 Score=24.59 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHh
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLY 37 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LY 37 (111)
+=..|+.||+.++-.|..+.-.+..+
T Consensus 85 ~l~~~~~~L~~A~~sD~~~~~~~~~~ 110 (296)
T PF13949_consen 85 ELQKYREYLEQASESDSQLRSKLESI 110 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44679999999988887776655543
No 401
>KOG4603|consensus
Probab=37.92 E-value=93 Score=24.51 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
|..+|...|.-++..|..++..|++.+....+.|..+
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777777766666666666655555555443
No 402
>KOG0995|consensus
Probab=37.75 E-value=68 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
-.++.|+.|++.-..+++.|++++.+|+.+++
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777777777777764
No 403
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.67 E-value=1.3e+02 Score=27.72 Aligned_cols=79 Identities=16% Similarity=0.292 Sum_probs=51.7
Q ss_pred hhhHHHHHHH-HHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHH------HHHHHHHHHHHHHHHHHHH
Q psy16078 10 EKNKEAFRRY-LEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAE------YEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 10 dsKrEeFRkY-LE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e------~e~Lk~E~~~lk~~i~~L~ 82 (111)
+....++|+| -|...=++.|-.+|-+|-+.... |-..|.+ -+... +-.-+.+++.++..+..=.
T Consensus 572 e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~-------LE~sLsa--EtriKldLfsaLg~akrq~ei~~~~~~~~d 642 (697)
T PF09726_consen 572 ESELQELRKYEKESEKDTEVLMSALSAMQDKNQH-------LENSLSA--ETRIKLDLFSALGDAKRQLEIAQGQLRKKD 642 (697)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------HHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455789999 88777799999999999665544 4444554 22222 2334566666666666667
Q ss_pred HHHHHHHHHhccccc
Q psy16078 83 ATVANLKERLSKYEV 97 (111)
Q Consensus 83 ~e~~eL~~~l~~~e~ 97 (111)
++|.+|+++|.++-.
T Consensus 643 ~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 643 KEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777776665543
No 404
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.54 E-value=1.4e+02 Score=22.48 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHh-cCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 24 GVVDAITSALVMLY-SIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 24 GVlDaLTkvLV~LY-Ee~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
||+..|..++.+-. +-=++=+||-.-|.+++-. -...+..++..+.........|++++.++...+..++.
T Consensus 1 ~lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird---~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 1 GLFKRLKTLVKANINELLDKAEDPEKMLEQAIRD---MEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444322 2234445666777777655 24677778888887777777777777777777766543
No 405
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=37.52 E-value=1e+02 Score=19.64 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.++.+......+......+...+.+++.+|.+.
T Consensus 14 ~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 14 KLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556666666666666554
No 406
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.51 E-value=78 Score=23.43 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
|..++..++.+...|.+.+...+.++..++
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444333
No 407
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=37.49 E-value=69 Score=22.44 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+|.+-|++.+.++-.++..|..++..++...
T Consensus 15 EEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 15 EEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666666666666666666665555544
No 408
>PRK14145 heat shock protein GrpE; Provisional
Probab=37.48 E-value=1.6e+02 Score=22.88 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
......++..|+.++..|++++.+++.++...
T Consensus 40 ~~~~~~e~~~l~~~l~~le~e~~el~d~~lR~ 71 (196)
T PRK14145 40 QQQTVDEIEELKQKLQQKEVEAQEYLDIAQRL 71 (196)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888888887766443
No 409
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.44 E-value=78 Score=23.07 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
|..|...+..|..+++.+...+.++
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 410
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=37.31 E-value=1.1e+02 Score=24.85 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=35.1
Q ss_pred CHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 45 DPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 45 dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..++.|-+.+|- ..+++.|.++-+.++.+++.|.+++.+...+.+
T Consensus 191 ~vve~lnk~~~l----~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~ 235 (244)
T COG1938 191 RVVEALNKMLGL----NVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVE 235 (244)
T ss_pred HHHHHHHHHhcC----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 357778888887 567788999988888888888888877765543
No 411
>KOG4787|consensus
Probab=37.25 E-value=57 Score=30.25 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQP 103 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~~~ 103 (111)
....++.++.+++.|+.+++.++++++-|..+|..++.+-.-++
T Consensus 330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~ 373 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGG 373 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccc
Confidence 57889999999999999999999999999999999987655443
No 412
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=37.21 E-value=93 Score=21.97 Aligned_cols=22 Identities=0% Similarity=0.102 Sum_probs=13.6
Q ss_pred hcChHHHHHHHHHHHhcCCCCC
Q psy16078 22 QSGVVDAITSALVMLYSIEEKP 43 (111)
Q Consensus 22 ~~GVlDaLTkvLV~LYEe~ekP 43 (111)
+-.-+-.|+|.|..+-.....|
T Consensus 14 ~dr~l~~l~k~~~~~~~~~~~~ 35 (139)
T PF05615_consen 14 DDRPLKRLLKRFLKWCNLSDSI 35 (139)
T ss_pred CchhHHHHHHHHHHHHhhhccc
Confidence 3445666777777776666544
No 413
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=37.18 E-value=1.6e+02 Score=26.76 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=42.1
Q ss_pred cChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 23 SGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 23 ~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.||||+|.+.|=.|-- -+-||+...|...|...-.++--.....|+.++..|+++.=
T Consensus 228 ~~~Id~ln~eLE~l~~-------Ql~~L~s~~~ieve~N~R~~~~L~KF~sle~~v~~L~~~~~ 284 (669)
T COG5244 228 DGVIDELNGELERLRR-------QLVSLMSSHGIEVEENSRLKATLEKFQSLELKVNTLQEELY 284 (669)
T ss_pred HHHHHHHhhHHHHHHH-------HHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776632 67889999998777777777777777777888888877643
No 414
>COG5570 Uncharacterized small protein [Function unknown]
Probab=37.04 E-value=1e+02 Score=19.77 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=16.2
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy16078 49 FIRRNLGDERPEVAEYEAVLQDLDEAKAELDQL 81 (111)
Q Consensus 49 fir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L 81 (111)
=|...+..+.-++..+..|++.--.|+.+|+.|
T Consensus 20 ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkL 52 (57)
T COG5570 20 EIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKL 52 (57)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 366667773334444555544444444444433
No 415
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=36.84 E-value=67 Score=25.39 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.|..=||+++|.+ .-|..|+-|...++..|..|-++.+
T Consensus 150 ~D~vL~LKHNLNA-----~AI~sL~~e~~~~~~di~~Li~~m~ 187 (201)
T PF11172_consen 150 RDQVLYLKHNLNA-----QAIASLQGEFSSIESDISQLIKEME 187 (201)
T ss_pred HHHHHHHhccccH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999998 5677888888888887777766544
No 416
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.73 E-value=99 Score=21.25 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+-.+-|......|...+..|.+.+..++.++.+.
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666655443
No 417
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=36.67 E-value=12 Score=26.28 Aligned_cols=28 Identities=32% Similarity=0.606 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+++.+|...+..|+.++.+|+.++..++
T Consensus 13 K~~~~LE~~l~~l~~el~~L~~~l~eLe 40 (118)
T PF08286_consen 13 KELSDLESELESLQSELEELKEELEELE 40 (118)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 418
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.66 E-value=2.6e+02 Score=23.62 Aligned_cols=80 Identities=13% Similarity=0.340 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcChH----HHHHHH-------HHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHH-HHHHHHHHHHH
Q psy16078 11 KNKEAFRRYLEQSGVV----DAITSA-------LVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAV-LQDLDEAKAEL 78 (111)
Q Consensus 11 sKrEeFRkYLE~~GVl----DaLTkv-------LV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~L-k~E~~~lk~~i 78 (111)
++..+|+.++++ ++ +.++.+ +..+| +.+|..-.+.+.+.+|- -.-..+..+ +..+.++++++
T Consensus 110 ~~~~~~~~~i~~--~~g~~~~~f~~~v~l~q~~f~~f~--~~~~~er~~il~~l~~~--~~~~~~~~~~k~~~~e~~~~i 183 (562)
T PHA02562 110 ASSKDFQKYFEQ--MLGMNYKSFKQIVVLGTAGYVPFM--QLSAPARRKLVEDLLDI--SVLSEMDKLNKDKIRELNQQI 183 (562)
T ss_pred ccHHHHHHHHHH--HHCCCHHHHhHHheeccCchhhHh--cCChHhHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcccc
Q psy16078 79 DQLTATVANLKERLSKYE 96 (111)
Q Consensus 79 ~~L~~e~~eL~~~l~~~e 96 (111)
..|..++..+..++..++
T Consensus 184 ~~l~~~i~~l~~~i~~~~ 201 (562)
T PHA02562 184 QTLDMKIDHIQQQIKTYN 201 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
No 419
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.52 E-value=84 Score=23.91 Aligned_cols=20 Identities=40% Similarity=0.699 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q psy16078 76 AELDQLTATVANLKERLSKY 95 (111)
Q Consensus 76 ~~i~~L~~e~~eL~~~l~~~ 95 (111)
++++.|++++..|+++|..|
T Consensus 110 ~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555543
No 420
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=36.51 E-value=1.5e+02 Score=20.76 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
...|...++++.+++++|+.....|...+....
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (127)
T TIGR02047 81 NALLDEHISHVRARIIKLQALIEQLVDLRGRCN 113 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445777888888888888888777776655443
No 421
>PRK10698 phage shock protein PspA; Provisional
Probab=36.46 E-value=1.3e+02 Score=23.44 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=47.0
Q ss_pred ChHHHHHHHHH-HHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 24 GVVDAITSALV-MLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 24 GVlDaLTkvLV-~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
||+..|+.++- .+.+-=++-+||..-|++++-.- .+++..++..+..+...-..+++++.++......++.
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em---~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEM---EDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555443 23333455567777777776552 4567777888888888888888888888877776653
No 422
>PLN02320 seryl-tRNA synthetase
Probab=36.38 E-value=58 Score=28.82 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHH-------HhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIR-------RNLGDERPEVAEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir-------~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
..+.+++=|.+.|+-.. ..-++.||++--.=..-++-++ +.++. .....+.++|+.+...|++++..|+.+
T Consensus 75 n~~~v~~~l~~R~~~~~-vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~ 152 (502)
T PLN02320 75 NKEAVAINIRNRNSNAN-LELVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEED 152 (502)
T ss_pred CHHHHHHHHHhcCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888885111 3455666654332222223222 22333 122356788888899999999999888
Q ss_pred HHHHHHHhccc
Q psy16078 85 VANLKERLSKY 95 (111)
Q Consensus 85 ~~eL~~~l~~~ 95 (111)
+.++..++...
T Consensus 153 ~~~~~~~l~~~ 163 (502)
T PLN02320 153 LVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHH
Confidence 88888777554
No 423
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=36.23 E-value=1.5e+02 Score=20.67 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
...|....+++.+++.+|+.....|...+....
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~~~~ 113 (127)
T cd01108 81 KALALEHIAELERKIAELQAMRRTLQQLADSCH 113 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456788888888888888888888777776543
No 424
>PRK14139 heat shock protein GrpE; Provisional
Probab=36.17 E-value=79 Score=24.36 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+++.|..++++|+.++.+|+...--+.+.++.|
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~ 65 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENV 65 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888877776666666544
No 425
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.07 E-value=64 Score=23.82 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhccc
Q psy16078 60 EVAEYEAVLQDLDEAKAEL------------DQLTATVANLKERLSKY 95 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i------------~~L~~e~~eL~~~l~~~ 95 (111)
...+..+|+.|+.+++++. ..|+++++.+.++|+++
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666665555443 23455555555555443
No 426
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.05 E-value=1.3e+02 Score=21.78 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=36.4
Q ss_pred HHHHHHHHhcChHHH-HHHHHHHHhcCCCCCCCHHHHHHHhhCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 14 EAFRRYLEQSGVVDA-ITSALVMLYSIEEKPEDPLDFIRRNLGDE---RPEVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 14 EeFRkYLE~~GVlDa-LTkvLV~LYEe~ekP~dalefir~~Lg~~---~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
.++-+++.+.--|++ |..+=.+|=|-..-|+|+.= .+.-|.. ..-..-++.|....+.|..++..|+++-..++
T Consensus 20 ~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~v--Yk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~ 97 (119)
T COG1382 20 QQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPV--YKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH--HHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333332 22233333344566666532 2333332 11123355566666666666666555555555
Q ss_pred HHhccc
Q psy16078 90 ERLSKY 95 (111)
Q Consensus 90 ~~l~~~ 95 (111)
.+++.+
T Consensus 98 e~l~eL 103 (119)
T COG1382 98 ERLEEL 103 (119)
T ss_pred HHHHHH
Confidence 554444
No 427
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.84 E-value=76 Score=21.95 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 68 LQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+.++.+|+-++.+++.++..+.++++
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444444443
No 428
>PRK10963 hypothetical protein; Provisional
Probab=35.79 E-value=53 Score=25.38 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~ 82 (111)
.++.|+.+|.+|+.++..|-
T Consensus 45 Q~~~LR~r~~~Le~~l~~Li 64 (223)
T PRK10963 45 QMARQRNHIHVLEEEMTLLM 64 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555543
No 429
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=35.77 E-value=1e+02 Score=19.02 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.+.+.++++-++|++|++.-.
T Consensus 16 ~IEqkiedid~qIaeLe~KR~ 36 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAKRQ 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 430
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=35.75 E-value=2e+02 Score=25.71 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy16078 57 ERPEVAEYEAVLQDLDEAKAELD 79 (111)
Q Consensus 57 ~~p~~~e~e~Lk~E~~~lk~~i~ 79 (111)
++|....+-.++.+++++++++.
T Consensus 311 y~~~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 311 MLANHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777766654
No 431
>PRK14147 heat shock protein GrpE; Provisional
Probab=35.73 E-value=63 Score=24.45 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+.+.|..+++.|++++.+|+.+..-+.+.++.|
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~ 51 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQ 51 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777776666666544
No 432
>COG4969 PilA Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.68 E-value=26 Score=25.15 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=16.0
Q ss_pred HHHHHHHhcChHHHHHHH
Q psy16078 15 AFRRYLEQSGVVDAITSA 32 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkv 32 (111)
.|++|.+++||+++|...
T Consensus 29 ~YQ~y~~k~~v~~al~~~ 46 (125)
T COG4969 29 LYQNYVARAQVMAALADI 46 (125)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 589999999999999864
No 433
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.64 E-value=90 Score=22.69 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
...+.|...+..|..+-..+..++++|++.|.+.-..
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567788888888888888888888888888655443
No 434
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.50 E-value=43 Score=26.57 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q psy16078 73 EAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 73 ~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+|.++++.|++++.+|+++|..+
T Consensus 189 dlearv~aLe~eva~L~~rld~l 211 (215)
T COG3132 189 DLEARVEALEQEVAELRARLDSL 211 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777777777666544
No 435
>KOG4005|consensus
Probab=35.33 E-value=80 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
-+.|+.||+.|+.+++-|-.++.+|...|+
T Consensus 106 n~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 106 NEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444444444444444444443
No 436
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.10 E-value=1.2e+02 Score=20.12 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=3.8
Q ss_pred HHHHHhhCC
Q psy16078 48 DFIRRNLGD 56 (111)
Q Consensus 48 efir~~Lg~ 56 (111)
+=|++.+..
T Consensus 61 ~~I~~~l~~ 69 (96)
T cd04768 61 AEIKELLDT 69 (96)
T ss_pred HHHHHHHhc
Confidence 334444443
No 437
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=35.02 E-value=1.4e+02 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
+.+|-+.|+.|+..+..+|..|.+-+
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL 52 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVL 52 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888877776553
No 438
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=35.00 E-value=80 Score=26.10 Aligned_cols=24 Identities=29% Similarity=0.518 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 70 DLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+++.+|..+..|..++..|+.+|.
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555554
No 439
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=34.74 E-value=2.1e+02 Score=23.01 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=29.2
Q ss_pred HHHHHhcCCCCC--CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 32 ALVMLYSIEEKP--EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 32 vLV~LYEe~ekP--~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+|-.|..-...| .+|=.+|+++|... |. .-|- |.+-+-=...-+++++.+|++|+++|.+
T Consensus 12 lf~RL~~ae~~prD~eAe~lI~~~~~~q-P~-A~Y~-laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 12 LFSRLKQAEAQPRDPEAEALIAQALARQ-PD-APYY-LAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhC-Cc-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444334445 45678999999983 43 2221 1111111222344455555555555544
No 440
>KOG2189|consensus
Probab=34.71 E-value=88 Score=29.55 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=29.6
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 52 RNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 52 ~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..+.+ |...++..|...++++..++.++.+-.+.|+++..
T Consensus 84 ~~~~~--p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~ 123 (829)
T KOG2189|consen 84 ESPPA--PPPREIIDLEEQLEKLESELRELNANKEALKANYN 123 (829)
T ss_pred ccCCC--CCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555 77888888888888888888888777766665543
No 441
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=34.66 E-value=1.2e+02 Score=23.78 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+..+|..+...++.++..|..+|..|+.+...-
T Consensus 154 ~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~ 187 (192)
T PF11180_consen 154 QEAQALEAERRAAQAQLRQLQRQVRQLQRQANEP 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5566677777777777777777777776665543
No 442
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.58 E-value=1.2e+02 Score=21.39 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+.+..++..|..+...|++.+.+++.+|..+
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555443
No 443
>KOG0976|consensus
Probab=34.55 E-value=1e+02 Score=29.81 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=35.4
Q ss_pred CHHHHHHHhhCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 45 DPLDFIRRNLGDE---RPEVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 45 dalefir~~Lg~~---~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
--++||+..+... +.-.-+++.|+.+|..-..+|+.|+.+|.+..
T Consensus 463 emv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQeth 510 (1265)
T KOG0976|consen 463 EMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETH 510 (1265)
T ss_pred HHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888887772 12357899999999999999999999887643
No 444
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=34.52 E-value=1.4e+02 Score=19.98 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
.+.|....+++.+++++|++....|..
T Consensus 73 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 99 (102)
T cd04775 73 QAILEERLQSLNREIQRLRQQQQVLAA 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655544
No 445
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=34.40 E-value=1.3e+02 Score=19.70 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 56 DERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 56 ~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
|+..+..++.+-+.+...+..+|.+|+..+.
T Consensus 40 GDlsENaeY~aAke~q~~le~rI~~Le~~l~ 70 (74)
T PF03449_consen 40 GDLSENAEYHAAKERQAFLEARIRELEERLA 70 (74)
T ss_dssp SSSTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456778888888888888888887777765
No 446
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.37 E-value=1.1e+02 Score=22.87 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.++..++.++......+..|+.++..|+.++..
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555554444444433
No 447
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=34.34 E-value=92 Score=21.26 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=28.0
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
++.-||..-+...=+=.|-.++++|++++..|++++.-
T Consensus 59 L~~dl~in~~gialvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 59 LRHELALDWPGIAVALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567776555666778888888888888888887653
No 448
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=34.23 E-value=84 Score=24.48 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
-+..|++.|..=-+.+++++.+|+.++.+--.+|
T Consensus 142 eER~EaeQLQsLR~avRqElqELE~QL~DRl~~l 175 (179)
T PF14723_consen 142 EEREEAEQLQSLRSAVRQELQELEFQLEDRLLQL 175 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888777654444
No 449
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=34.16 E-value=41 Score=21.71 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 71 LDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+..|..+|+.|++++.+|.=+|.
T Consensus 23 L~~LH~EIe~Lq~~~~dL~~kL~ 45 (60)
T PF14916_consen 23 LKGLHAEIERLQKRNKDLTFKLI 45 (60)
T ss_pred HHHHHHHHHHHHHhccccceeee
Confidence 55667777777777777776664
No 450
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=34.03 E-value=1.7e+02 Score=20.73 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+-.+.+|++.|.=++..|.+++..|+..+...
T Consensus 40 ~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 40 QALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777777777777766633
No 451
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=34.03 E-value=1.5e+02 Score=20.22 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.....+++|-...++|-.++++|+...+.+....+
T Consensus 22 ~s~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~q 56 (78)
T COG4238 22 SSNAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQ 56 (78)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888887776654
No 452
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=34.02 E-value=71 Score=19.84 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~ 82 (111)
-+-++|++|+..|+..+-+|-
T Consensus 11 ydreqlrrelnsLR~~vhelc 31 (48)
T PF10845_consen 11 YDREQLRRELNSLRRSVHELC 31 (48)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777666554
No 453
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=34.01 E-value=1e+02 Score=24.30 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
--.||..|..+|+.+..+|..|+.....+
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk~en~~L 151 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLKEENEEL 151 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667677777777777777665544
No 454
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.98 E-value=62 Score=21.93 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16078 74 AKAELDQLTATVANLKER 91 (111)
Q Consensus 74 lk~~i~~L~~e~~eL~~~ 91 (111)
+..+..++..++..|+.+
T Consensus 81 ~~~~~~~~~~~~~~l~~~ 98 (99)
T cd04765 81 AEERLPSIRAELLDLRDQ 98 (99)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444444444444444443
No 455
>KOG4571|consensus
Probab=33.96 E-value=92 Score=25.99 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+.++|.-|+..|-.++++|+.+..+|...++
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ 279 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIR 279 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555543
No 456
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.95 E-value=1.3e+02 Score=19.22 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
+|..|..+++.|...+..|+..+.
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 457
>PRK11239 hypothetical protein; Provisional
Probab=33.89 E-value=71 Score=25.52 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.....|..++..|+.++.+|++++.++.
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~ 210 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLL 210 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446688888888888888888877654
No 458
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.85 E-value=1.2e+02 Score=21.62 Aligned_cols=29 Identities=14% Similarity=0.411 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+-.+..+++.|...+..|+.+++++..++
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 459
>KOG0963|consensus
Probab=33.80 E-value=70 Score=29.29 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVES 100 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~ 100 (111)
.++|..+..++++++++|..|++++..|..++..--++..
T Consensus 234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6889999999999999999999999999999987666543
No 460
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=33.79 E-value=1.2e+02 Score=27.56 Aligned_cols=46 Identities=4% Similarity=0.177 Sum_probs=30.9
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
-++|..+++..+.-....+.|...+..+..+++.+..+++.+..+|
T Consensus 585 ~~~l~~~t~~~G~i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl 630 (661)
T PRK06664 585 LEYLSPYTQAGGIIYNKVKGLDERIADNNKKIEEYEKKLESKERKL 630 (661)
T ss_pred HHHHHHHHcCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666654444445667777888888888888877777666665
No 461
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.67 E-value=1.4e+02 Score=20.37 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESD 101 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~ 101 (111)
..+..++.++..+..++..|+.++.+....+..++.-+++
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d 49 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDD 49 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3456666667777777777777777766666666554433
No 462
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=33.59 E-value=1.1e+02 Score=23.38 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..++..|+-+.+.|.+++..|.++.++|..++..
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666665543
No 463
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=33.57 E-value=1.2e+02 Score=22.91 Aligned_cols=30 Identities=33% Similarity=0.615 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.+++.|++|+.+++.++...-.+.+.|...
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~ 56 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKR 56 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>KOG0995|consensus
Probab=33.53 E-value=1.7e+02 Score=26.68 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=49.9
Q ss_pred HHHHHHHh-cChHHHHHHHHHHHhcCCCCCCCHHHHHHHh-------hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 15 AFRRYLEQ-SGVVDAITSALVMLYSIEEKPEDPLDFIRRN-------LGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 15 eFRkYLE~-~GVlDaLTkvLV~LYEe~ekP~dalefir~~-------Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
-|+.|+.. .++-.+.+++|-.|-++-+.=+.-++-|+.. +--.+-..+||+.+..|+++|++.++.++.+++
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777764 4666777777777766655544444433322 111124568888888888888888887777777
Q ss_pred HHHHHh
Q psy16078 87 NLKERL 92 (111)
Q Consensus 87 eL~~~l 92 (111)
.|...+
T Consensus 357 ~l~k~v 362 (581)
T KOG0995|consen 357 RLSKEV 362 (581)
T ss_pred HHHHHH
Confidence 776655
No 465
>PHA03011 hypothetical protein; Provisional
Probab=33.45 E-value=92 Score=22.57 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
-|+.+++..+++|+.++++|..+-..+......|+
T Consensus 57 GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~ 91 (120)
T PHA03011 57 GDINAIIEILDELIAQYNELLDEYNLIENEIKDLE 91 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777787777777777666555554443
No 466
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.41 E-value=1.2e+02 Score=22.09 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+++..++.++++.+..++.+...+..|..+|..++
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666666666666666666665554
No 467
>KOG0930|consensus
Probab=33.39 E-value=1e+02 Score=26.24 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESD 101 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~ 101 (111)
+..++..++.--++|-.+|+.|+.++.+.-+++..++..++.
T Consensus 15 E~~eL~~ir~rk~qL~deIq~Lk~Ei~ev~~eid~~~~~e~s 56 (395)
T KOG0930|consen 15 ERMELENIRRRKQELLDEIQRLKDEIAEVMEEIDNLESTEES 56 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccch
Confidence 357788899999999999999999999999999998887653
No 468
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=33.30 E-value=1.3e+02 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCH
Q psy16078 30 TSALVMLYSIEEKPEDPLDFIRRNLGDERPEV 61 (111)
Q Consensus 30 TkvLV~LYEe~ekP~dalefir~~Lg~~~p~~ 61 (111)
.=++++++ ++.++++.+.+|-+.|..
T Consensus 42 ~~l~~~if------P~~~~~vA~~lGi~~~~n 67 (115)
T PF10066_consen 42 ILLILSIF------PNILDWVAKLLGIGRPPN 67 (115)
T ss_pred HHHHHHhh------hhHHHHHHHHHCCCchhH
Confidence 33455665 489999999999988763
No 469
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=33.22 E-value=1.2e+02 Score=20.76 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhccccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELD------QLTATVANLKERLSKYEV 97 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~------~L~~e~~eL~~~l~~~e~ 97 (111)
+...+..+|+.|+.-|+.+|+ ...-+|..|+.++..|..
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888886554 334456667766666544
No 470
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.15 E-value=83 Score=28.34 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.+++.|+.+++++..++..+..+++.++..+.+..
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~ 362 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLE 362 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777766665543
No 471
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.10 E-value=1.1e+02 Score=24.51 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..++..|+.+++.|++++.+|+.+..-+.+.++.|
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~ 100 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNF 100 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777766666666555544
No 472
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=33.08 E-value=1.2e+02 Score=24.61 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTAT---VANLKERLSKYEV 97 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e---~~eL~~~l~~~e~ 97 (111)
-.+...+..+|+.|+.++.+++.. +..|+++-+++.+
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~ 104 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKE 104 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776555443 4444444444433
No 473
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=33.08 E-value=1.4e+02 Score=19.45 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=29.3
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++-+.+.||. | .|-..|+..+..++.++..|-+.+.+.=.+|..+
T Consensus 15 l~k~~~~lGt--~--~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 15 LEKLVNQLGT--P--RDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHH-S--S--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCC--c--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557778897 3 4456677777777777777777777766666555
No 474
>KOG0570|consensus
Probab=33.06 E-value=2e+02 Score=23.09 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCC
Q psy16078 13 KEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGD 56 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~ 56 (111)
-|.|++|+++ |.+.|+..+++|--.-+.|.+..+-++-.+..
T Consensus 149 ve~~kk~~~~--~~e~l~d~~~tL~~~~~~~p~~~q~~r~~~~~ 190 (223)
T KOG0570|consen 149 VEDFKKHLRQ--VREVLDDQFQTLRGKLPAPPQSSQLTRVKLQD 190 (223)
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhcccCCCCcchhhhhhhhccc
Confidence 4789999987 78999999999987778888888877765543
No 475
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=32.93 E-value=1.3e+02 Score=28.40 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhhCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 31 SALVMLYSIEEKPEDPLDFIRRNLGDER-PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 31 kvLV~LYEe~ekP~dalefir~~Lg~~~-p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++=..+|+....=...++-++..+++.. -+.++...|..++..+......+......+...+.
T Consensus 184 ~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (1047)
T PRK10246 184 QISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQQQQSLN 247 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555677788888887653 24677877888777777777777776666665444
No 476
>PRK10698 phage shock protein PspA; Provisional
Probab=32.91 E-value=98 Score=24.07 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+..|+.+++.....+..|+..+..|+.++.
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 477
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=32.78 E-value=1.2e+02 Score=27.34 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
..|.++-.+++.|+..+..+.+++.++..+|.++....
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~ 407 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSRYREEA 407 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666666677777777777777777777777776653
No 478
>KOG4055|consensus
Probab=32.77 E-value=35 Score=27.04 Aligned_cols=48 Identities=25% Similarity=0.378 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCC--------------CCHHHHHHHhhCCC
Q psy16078 9 NEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKP--------------EDPLDFIRRNLGDE 57 (111)
Q Consensus 9 ~dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP--------------~dalefir~~Lg~~ 57 (111)
.+.+.+.-|...+++ .-|..---|..||-.|+|| +++.+|+++.+|..
T Consensus 13 ~d~~~e~~r~~i~k~-aaDl~rlkl~rl~knpdkp~~ip~~k~~lr~~~e~vp~fVrnv~GSS 74 (213)
T KOG4055|consen 13 LDPKAEPARALIEKK-AADLQRLKLERLMKNPDKPVPIPDEKVKLRAPLENVPEFVRNVMGSS 74 (213)
T ss_pred Cccccchhhhhhhhh-hhhHhhhHHHHHhcCCCcCCCCchHHHHHhcccccccHHHHhccccc
Confidence 344555555555443 3455555788999999999 35889999999985
No 479
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=32.60 E-value=29 Score=23.80 Aligned_cols=38 Identities=32% Similarity=0.276 Sum_probs=28.5
Q ss_pred HHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhC
Q psy16078 17 RRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLG 55 (111)
Q Consensus 17 RkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg 55 (111)
+.|....+-||+|.-+|..|...|+| -+-+.=||...+
T Consensus 29 ~eY~~~~~tVealV~aL~elLnt~~K-~sLLsEiR~lI~ 66 (81)
T cd07357 29 DEYRSGHISVDALVMALFELLNTHEK-FSLLSEIRELIS 66 (81)
T ss_pred HHHHcCCCCHHHHHHHHHHHhccHHH-HHHHHHHHHhcC
Confidence 56778888999999999999998888 333444444443
No 480
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=32.60 E-value=1.2e+02 Score=20.42 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
++-+...+..++..++.|..++..++.++..
T Consensus 79 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 109 (120)
T PF02996_consen 79 IEFLKKRIKELEEQLEKLEKELAELQAQIEQ 109 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555443
No 481
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=32.54 E-value=1.2e+02 Score=19.81 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
-|+.|+..|+-|..-.++-+.+-++|-..+.++++
T Consensus 6 ~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es 40 (67)
T PF10506_consen 6 RIEELKSQNEMLSSTLEERKQQSEELSMDLGKYES 40 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666666666667777777777776654
No 482
>PRK14011 prefoldin subunit alpha; Provisional
Probab=32.52 E-value=1.1e+02 Score=22.52 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
.+++.+-..++.++++++.|...+..|+.
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~ 31 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDM 31 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444
No 483
>KOG0963|consensus
Probab=32.48 E-value=1.9e+02 Score=26.59 Aligned_cols=89 Identities=29% Similarity=0.378 Sum_probs=57.7
Q ss_pred CChhhHHHHHHHHHh-cChHHHHHH-------HHHH----HhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q psy16078 8 PNEKNKEAFRRYLEQ-SGVVDAITS-------ALVM----LYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAK 75 (111)
Q Consensus 8 ~~dsKrEeFRkYLE~-~GVlDaLTk-------vLV~----LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk 75 (111)
+.+-|+..|+.-|-. ++=||.||+ +|+. |+|-|+ |...+.=+...++...+...+.+.|+.++.++.
T Consensus 56 ~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPD-P~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~ 134 (629)
T KOG0963|consen 56 TPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPD-PVPLLASAAELLNKQQKASEENEELKEELEEVN 134 (629)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCC-CchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 466777777776654 455788876 3555 444554 677888888888887665667777777777776
Q ss_pred HHHHHHHH---HHHHHHHHhccccc
Q psy16078 76 AELDQLTA---TVANLKERLSKYEV 97 (111)
Q Consensus 76 ~~i~~L~~---e~~eL~~~l~~~e~ 97 (111)
.++..++. .+..|+.++.+|+.
T Consensus 135 ~el~~~k~qq~~v~~l~e~l~k~~~ 159 (629)
T KOG0963|consen 135 NELADLKTQQVTVRNLKERLRKLEQ 159 (629)
T ss_pred HHHhhhhhhHHHHHhHHHHHHHHHH
Confidence 66554433 35555555555543
No 484
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.45 E-value=95 Score=25.94 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++|..|..++.+|+.++..+..++++|...|.
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55555666666666666665555555555543
No 485
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=32.39 E-value=88 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 70 DLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..+.+..++++..+++..++.+|..
T Consensus 81 ~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 81 CLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555543
No 486
>PRK13960 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=32.36 E-value=1.2e+02 Score=26.00 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.4
Q ss_pred CCCCCCCChhhHHHHHHHHHhc
Q psy16078 2 SFIPETPNEKNKEAFRRYLEQS 23 (111)
Q Consensus 2 ~~~~~~~~dsKrEeFRkYLE~~ 23 (111)
+|.++...++-|+-||.||...
T Consensus 275 ~Y~~G~~~~~dKe~vR~wl~~~ 296 (367)
T PRK13960 275 AYRDGKIVENSKEGFRQFLLNH 296 (367)
T ss_pred cccCCCCCcchHHHHHHHHHhc
Confidence 4667778888999999999965
No 487
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=32.24 E-value=88 Score=21.03 Aligned_cols=42 Identities=24% Similarity=0.539 Sum_probs=21.3
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
++|.+|+.+.+..- ...++.+..++..++.++..+...+..+
T Consensus 76 ~eA~~~l~~r~~~l---~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 76 EEAIEFLKKRIKEL---EEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666766665441 2444555555555555555554444443
No 488
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=32.22 E-value=74 Score=20.90 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=19.0
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~ 82 (111)
++.-||...+..+=+-.|..+++.|++++..|+
T Consensus 51 L~~Dl~in~~gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 51 LHRDLGINLEGIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677754444555555555665555555553
No 489
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=32.02 E-value=1.5e+02 Score=19.57 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
++|..=+..|+.++..|+-++.+|.+++.+..++
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s 46 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPS 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444445555556666666666666666555554
No 490
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=31.90 E-value=1.8e+02 Score=20.34 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 68 LQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
+.|-+=|+.++.+|..+++.|..+|.+|...
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667889999999999999999999864
No 491
>PRK14163 heat shock protein GrpE; Provisional
Probab=31.88 E-value=97 Score=24.52 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+.+.|+.++..|+.++.+|+....-+++.++.|
T Consensus 39 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~ 73 (214)
T PRK14163 39 AAATAGLTAQLDQVRTALGERTADLQRLQAEYQNY 73 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888777776666666554
No 492
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=31.58 E-value=1.6e+02 Score=20.05 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVL-QDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk-~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
......+ .+++.|+.++.-..++-++|+..|.-|-+.
T Consensus 11 ls~~e~~~k~lE~L~~eL~~it~ERnELr~~L~~~~~~ 48 (84)
T PF04822_consen 11 LSKKEKKMKELERLKFELQKITKERNELRDILALYTEG 48 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555 788899999999999999999999876553
No 493
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=31.51 E-value=1.2e+02 Score=20.82 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
=++.|.+.++.|..++.+|-+-+.+.+.++++
T Consensus 41 ~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 41 CLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888777777754
No 494
>KOG4809|consensus
Probab=31.51 E-value=89 Score=28.61 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.++|+.-++|+.+|+.+|..|+....+-.+++..|.
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlk 365 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK 365 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999998877777776664
No 495
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=31.43 E-value=1.8e+02 Score=20.08 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 14 EAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 14 EeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..||..|.+.| +.----||||-|-|+. ....-.-|.-..++..-+-.++..++.++.|++
T Consensus 25 ~~f~~~l~~~~----------------~~vGrkLdFl~QEm~R----E~NTigSKs~~~~i~~~vv~~K~~iEkiREQvq 84 (87)
T PF08340_consen 25 KQFRELLESEG----------------EPVGRKLDFLLQEMNR----EINTIGSKSNDAEISNLVVEMKTEIEKIREQVQ 84 (87)
T ss_pred HHHHHHHhcCC----------------CCCCCCCccchhhhcc----HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccc
Q psy16078 94 KYE 96 (111)
Q Consensus 94 ~~e 96 (111)
..|
T Consensus 85 NiE 87 (87)
T PF08340_consen 85 NIE 87 (87)
T ss_pred cCC
No 496
>PRK14142 heat shock protein GrpE; Provisional
Probab=31.43 E-value=90 Score=24.96 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 55 GDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 55 g~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
|+ -...+...+..++++|+.++.++..+.++++.+.++
T Consensus 35 ~~--~~~~~~~~~~~e~~elkdk~lR~~AEfEN~RKR~er 72 (223)
T PRK14142 35 GG--TAAADAAHTEDKVAELTADLQRVQADFANYRKRALR 72 (223)
T ss_pred CC--CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=31.34 E-value=1.4e+02 Score=22.28 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
...++.|..-...+.+.+..|.+++..+...++++
T Consensus 100 ~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 100 KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.34 E-value=1e+02 Score=23.23 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.+..+.|++.+++++.+++.++.+.-.++..++
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG0805|consensus
Probab=31.33 E-value=29 Score=29.02 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=0.0
Q ss_pred HHHHHHHHHhc
Q psy16078 13 KEAFRRYLEQS 23 (111)
Q Consensus 13 rEeFRkYLE~~ 23 (111)
|++||||++.+
T Consensus 82 R~ef~kY~a~A 92 (337)
T KOG0805|consen 82 RDEFRKYHASA 92 (337)
T ss_pred hHHHHHHHHHh
No 500
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=31.33 E-value=52 Score=24.56 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCCChhhHHHHHHHHH-hcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 4 IPETPNEKNKEAFRRYLE-QSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 4 ~~~~~~dsKrEeFRkYLE-~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~ 82 (111)
+|.++..--=.-||+=|- ..||||.+-|..-++- .+.|.|-.---.+-... .-+...+.-....+.+|.+|+
T Consensus 44 ~pe~pp~IDwa~Yk~~l~~~~~lVD~feK~y~s~k--ip~p~d~~~~~i~~~e~-----~~~~~~~~~~~~s~~~i~~l~ 116 (161)
T PF05873_consen 44 LPEQPPKIDWAHYKSVLKENPGLVDEFEKQYESFK--IPYPVDKQTKEIDAQEK-----EAIKEAKEFEAESKKRIAELE 116 (161)
T ss_dssp S-SS-----HHHHHHC-S-STTHHHHHHHHHCC----------TTTTHHHHHHH-----HHHHCHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHhhhhHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q psy16078 83 ATVANLKE 90 (111)
Q Consensus 83 ~e~~eL~~ 90 (111)
++++.+++
T Consensus 117 keL~~i~~ 124 (161)
T PF05873_consen 117 KELANIES 124 (161)
T ss_dssp HHHHHHT-
T ss_pred HHHHHHHc
Done!