Query psy16078
Match_columns 111
No_of_seqs 105 out of 129
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 20:19:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yy0_A C-MYC-binding protein; 99.7 1.1E-16 3.8E-21 100.1 5.4 53 44-96 1-53 (53)
2 3g36_A Protein DPY-30 homolog; 97.4 0.0001 3.5E-09 46.0 3.0 39 15-56 8-46 (55)
3 4f9k_A CAMP-dependent protein 96.4 0.0013 4.5E-08 45.2 2.2 40 15-56 39-78 (95)
4 3ra3_A P1C; coiled coil domain 94.9 0.019 6.7E-07 30.9 2.6 27 63-89 1-27 (28)
5 4dzn_A Coiled-coil peptide CC- 94.5 0.095 3.2E-06 29.1 4.8 28 63-90 3-30 (33)
6 1a93_B MAX protein, coiled coi 94.1 0.093 3.2E-06 29.8 4.3 30 67-96 5-34 (34)
7 1t2k_D Cyclic-AMP-dependent tr 93.5 0.18 6E-06 31.0 5.2 32 61-92 28-59 (61)
8 1hjb_A Ccaat/enhancer binding 93.2 0.18 6.1E-06 33.7 5.2 36 61-96 42-77 (87)
9 1go4_E MAD1 (mitotic arrest de 93.0 0.15 5E-06 35.1 4.6 36 60-95 10-45 (100)
10 1ci6_A Transcription factor AT 92.6 0.28 9.6E-06 30.5 5.2 31 62-92 30-60 (63)
11 2wt7_A Proto-oncogene protein 92.3 0.32 1.1E-05 30.1 5.2 31 62-92 30-60 (63)
12 1nkp_B MAX protein, MYC proto- 92.2 0.3 1E-05 31.4 5.2 33 64-96 49-81 (83)
13 1jnm_A Proto-oncogene C-JUN; B 91.1 0.18 6E-06 31.1 3.0 31 62-92 29-59 (62)
14 1gu4_A CAAT/enhancer binding p 91.0 0.32 1.1E-05 31.8 4.3 33 62-94 43-75 (78)
15 1nlw_A MAD protein, MAX dimeri 90.3 0.52 1.8E-05 30.6 4.9 32 64-95 49-80 (80)
16 1dip_A Delta-sleep-inducing pe 90.3 0.085 2.9E-06 34.9 1.0 42 48-91 3-44 (78)
17 3ra3_B P2F; coiled coil domain 89.0 0.53 1.8E-05 25.2 3.4 25 64-88 2-26 (28)
18 2yy0_A C-MYC-binding protein; 88.5 0.59 2E-05 28.4 3.8 27 69-95 19-45 (53)
19 1ci6_A Transcription factor AT 87.4 1.3 4.4E-05 27.4 5.0 34 62-95 23-56 (63)
20 1nkp_A C-MYC, MYC proto-oncoge 86.1 1.4 4.9E-05 28.9 4.9 33 64-96 54-86 (88)
21 1t6f_A Geminin; coiled-coil, c 85.7 2.1 7.2E-05 24.5 4.8 28 62-89 7-34 (37)
22 1nkp_B MAX protein, MYC proto- 84.8 1.7 5.8E-05 27.7 4.7 36 46-88 45-80 (83)
23 2wt7_A Proto-oncogene protein 84.6 2.1 7.3E-05 26.2 5.0 34 62-95 23-56 (63)
24 2wuj_A Septum site-determining 84.1 1.1 3.7E-05 27.3 3.4 26 65-90 30-55 (57)
25 4dzn_A Coiled-coil peptide CC- 84.1 1.5 5.3E-05 24.1 3.6 24 70-93 3-26 (33)
26 3viq_B Mating-type switching p 84.0 1.3 4.3E-05 29.6 3.9 32 64-95 3-34 (85)
27 2dgc_A Protein (GCN4); basic d 83.9 1.7 5.8E-05 27.0 4.3 30 63-92 31-60 (63)
28 2wuj_A Septum site-determining 83.9 0.77 2.6E-05 28.0 2.6 34 60-96 21-54 (57)
29 1deb_A APC protein, adenomatou 83.4 1.7 5.7E-05 26.8 3.9 36 63-98 4-39 (54)
30 1nlw_A MAD protein, MAX dimeri 83.4 2.5 8.4E-05 27.3 5.1 35 46-87 45-79 (80)
31 1jnm_A Proto-oncogene C-JUN; B 83.2 2.6 8.9E-05 25.7 4.9 35 62-96 22-56 (62)
32 2jee_A YIIU; FTSZ, septum, coi 83.0 2.6 8.7E-05 27.9 5.1 24 64-87 22-45 (81)
33 1r8d_A Transcription activator 82.3 3 0.0001 27.4 5.3 33 63-95 76-108 (109)
34 1t2k_D Cyclic-AMP-dependent tr 82.3 3.1 0.0001 25.2 5.0 34 62-95 22-55 (61)
35 1gd2_E Transcription factor PA 81.7 2 7E-05 27.4 4.1 33 63-95 37-69 (70)
36 3he5_A Synzip1; heterodimeric 81.6 4.1 0.00014 24.2 5.1 32 62-93 10-48 (49)
37 4e61_A Protein BIM1; EB1-like 81.4 2.2 7.6E-05 29.5 4.4 29 65-93 7-35 (106)
38 3euj_A Chromosome partition pr 81.3 3.1 0.00011 34.7 6.2 80 13-96 171-281 (483)
39 1nkp_A C-MYC, MYC proto-oncoge 80.7 4 0.00014 26.6 5.4 38 45-89 49-86 (88)
40 3nmd_A CGMP dependent protein 80.5 4.4 0.00015 26.2 5.4 35 63-97 34-68 (72)
41 1dh3_A Transcription factor CR 80.4 2.4 8.4E-05 25.6 3.9 27 64-90 24-50 (55)
42 3rrk_A V-type ATPase 116 kDa s 80.0 4.3 0.00015 31.4 6.3 35 63-97 100-137 (357)
43 3hnw_A Uncharacterized protein 78.9 3.4 0.00011 29.3 4.9 26 64-89 91-116 (138)
44 3gpv_A Transcriptional regulat 78.9 2.9 0.0001 29.2 4.5 41 62-102 95-135 (148)
45 1kd8_B GABH BLL, GCN4 acid bas 78.5 4.2 0.00014 23.2 4.2 24 63-86 9-32 (36)
46 1hjb_A Ccaat/enhancer binding 78.2 3.5 0.00012 27.3 4.5 31 65-95 39-69 (87)
47 3w03_C DNA repair protein XRCC 77.9 3.9 0.00013 30.6 5.2 48 44-94 137-184 (184)
48 2oqq_A Transcription factor HY 77.7 7.5 0.00026 22.8 5.3 30 63-92 11-40 (42)
49 3i00_A HIP-I, huntingtin-inter 77.5 4.2 0.00015 28.3 5.0 23 62-84 15-37 (120)
50 2xdj_A Uncharacterized protein 77.4 4.5 0.00015 26.5 4.8 32 62-93 27-58 (83)
51 2jee_A YIIU; FTSZ, septum, coi 77.4 4.9 0.00017 26.5 5.0 19 62-80 27-45 (81)
52 2j5u_A MREC protein; bacterial 77.1 1.5 5.2E-05 33.6 2.8 33 61-93 25-60 (255)
53 1gmj_A ATPase inhibitor; coile 76.6 2.8 9.5E-05 27.9 3.6 38 61-98 39-80 (84)
54 1l8d_A DNA double-strand break 76.5 5.5 0.00019 26.1 5.2 42 62-103 10-51 (112)
55 3m48_A General control protein 76.5 4.2 0.00014 22.8 3.8 19 64-82 9-27 (33)
56 2dgc_A Protein (GCN4); basic d 75.8 3.8 0.00013 25.3 4.0 27 69-95 30-56 (63)
57 2izx_A CAMP-dependent protein 75.4 2.9 0.0001 23.3 3.1 16 41-56 21-36 (41)
58 2lw1_A ABC transporter ATP-bin 74.8 5.2 0.00018 25.8 4.6 29 66-94 19-47 (89)
59 2ve7_A Kinetochore protein HEC 74.6 15 0.0005 28.9 8.0 38 50-90 176-213 (315)
60 1uii_A Geminin; human, DNA rep 74.5 6.5 0.00022 26.1 5.0 24 69-92 46-69 (83)
61 1ik9_A DNA repair protein XRCC 74.4 4.3 0.00015 30.6 4.6 34 64-97 134-167 (213)
62 1gmj_A ATPase inhibitor; coile 74.4 12 0.0004 24.9 6.2 38 48-91 43-80 (84)
63 2wt7_B Transcription factor MA 74.3 7.6 0.00026 26.0 5.3 31 64-94 57-87 (90)
64 2kyg_A CAMP-dependent protein 74.0 3.1 0.00011 24.4 3.1 17 40-56 28-44 (50)
65 1kd8_A GABH AIV, GCN4 acid bas 74.0 7.5 0.00025 22.1 4.5 25 62-86 8-32 (36)
66 1gu4_A CAAT/enhancer binding p 73.1 5.9 0.0002 25.7 4.5 32 64-95 38-69 (78)
67 1a93_B MAX protein, coiled coi 73.1 5.4 0.00019 22.4 3.7 25 63-87 8-32 (34)
68 3v86_A De novo design helix; c 73.1 5.1 0.00018 21.1 3.4 23 66-88 4-26 (27)
69 1kd8_B GABH BLL, GCN4 acid bas 72.4 11 0.00037 21.4 4.9 29 64-92 3-31 (36)
70 1use_A VAsp, vasodilator-stimu 71.8 11 0.00038 22.4 5.0 29 59-87 4-33 (45)
71 1dh3_A Transcription factor CR 71.4 6 0.0002 23.8 4.0 29 68-96 21-49 (55)
72 1zme_C Proline utilization tra 70.5 7.1 0.00024 23.2 4.2 23 71-93 46-68 (70)
73 3mq7_A Bone marrow stromal ant 70.5 8.5 0.00029 27.2 5.1 32 62-93 78-109 (121)
74 3err_A Fusion protein of micro 70.4 6.6 0.00023 33.2 5.4 73 17-96 112-207 (536)
75 1wlq_A Geminin; coiled-coil; 2 70.4 7.2 0.00025 25.9 4.5 26 64-89 40-65 (83)
76 2wt7_B Transcription factor MA 69.9 9.1 0.00031 25.6 5.0 34 62-95 48-81 (90)
77 1go4_E MAD1 (mitotic arrest de 69.8 5.2 0.00018 27.3 3.8 25 62-86 19-43 (100)
78 3m48_A General control protein 69.7 8.4 0.00029 21.5 3.9 28 65-92 3-30 (33)
79 3qao_A LMO0526 protein, MERR-l 69.6 7.1 0.00024 29.6 4.9 49 47-97 63-111 (249)
80 1fmh_A General control protein 69.5 9.7 0.00033 20.9 4.1 27 63-89 2-28 (33)
81 2l5g_B Putative uncharacterize 68.9 6.6 0.00023 23.0 3.6 26 64-89 11-36 (42)
82 2oxj_A Hybrid alpha/beta pepti 68.7 9.8 0.00034 21.3 4.1 23 67-89 6-28 (34)
83 2vz4_A Tipal, HTH-type transcr 68.5 8.3 0.00028 25.2 4.5 45 47-93 61-105 (108)
84 1g6u_A Domain swapped dimer; d 68.5 9.7 0.00033 22.4 4.3 28 61-88 19-46 (48)
85 3gp4_A Transcriptional regulat 68.4 17 0.00059 25.1 6.4 72 10-97 45-116 (142)
86 3l6a_A Eukaryotic translation 68.1 2.4 8.3E-05 34.0 2.1 55 1-57 169-228 (364)
87 1jcd_A Major outer membrane li 67.8 15 0.0005 22.2 5.1 32 62-93 4-35 (52)
88 3kin_B Kinesin heavy chain; mo 67.1 7.8 0.00027 26.4 4.3 70 26-95 4-115 (117)
89 4etp_A Kinesin-like protein KA 66.6 4.9 0.00017 32.6 3.7 31 62-92 10-40 (403)
90 1uii_A Geminin; human, DNA rep 66.5 11 0.00036 25.1 4.6 31 62-92 46-76 (83)
91 2wg5_A General control protein 66.5 6.4 0.00022 26.5 3.7 27 64-90 9-35 (109)
92 3azd_A Short alpha-tropomyosin 66.4 2.2 7.6E-05 24.0 1.1 31 62-92 4-34 (37)
93 2j5u_A MREC protein; bacterial 66.2 1.8 6.2E-05 33.1 1.0 29 61-89 18-46 (255)
94 1r8e_A Multidrug-efflux transp 66.0 13 0.00044 27.3 5.6 49 47-97 66-114 (278)
95 3a7p_A Autophagy protein 16; c 65.9 10 0.00034 27.7 4.9 62 19-87 30-93 (152)
96 3trt_A Vimentin; cytoskeleton, 65.9 10 0.00035 23.5 4.3 28 62-89 49-76 (77)
97 3efg_A Protein SLYX homolog; x 65.7 10 0.00034 24.4 4.4 37 62-98 28-64 (78)
98 1l8d_A DNA double-strand break 65.0 15 0.00051 23.9 5.3 31 64-94 66-96 (112)
99 2zvf_A Alanyl-tRNA synthetase; 63.7 32 0.0011 23.7 7.1 40 50-89 19-59 (171)
100 1ug3_A EIF4GI, eukaryotic prot 63.6 7 0.00024 30.5 3.9 51 1-57 172-239 (339)
101 2q6q_A Spindle POLE BODY compo 63.5 13 0.00044 24.1 4.5 32 65-96 6-37 (74)
102 2wvr_A Geminin; DNA replicatio 63.5 12 0.0004 28.7 5.0 29 62-90 115-143 (209)
103 2oxj_A Hybrid alpha/beta pepti 62.9 18 0.00061 20.3 4.9 23 62-84 8-30 (34)
104 1q08_A Zn(II)-responsive regul 62.8 25 0.00087 22.0 8.0 71 12-97 4-74 (99)
105 3q4f_C DNA repair protein XRCC 62.7 9.1 0.00031 28.8 4.2 39 44-85 146-184 (186)
106 2oqq_A Transcription factor HY 62.4 20 0.0007 20.9 4.8 28 64-91 5-32 (42)
107 2v66_B Nuclear distribution pr 62.3 16 0.00055 25.2 5.1 30 62-91 42-71 (111)
108 2eqb_B RAB guanine nucleotide 62.1 10 0.00035 25.7 4.0 34 59-92 2-35 (97)
109 4etp_A Kinesin-like protein KA 61.8 12 0.00043 30.2 5.2 34 62-95 3-36 (403)
110 2pnv_A Small conductance calci 61.5 21 0.00073 20.7 4.9 31 65-95 12-42 (43)
111 3m91_A Proteasome-associated A 61.4 21 0.00072 21.4 5.0 34 62-95 9-42 (51)
112 2l5g_B Putative uncharacterize 61.3 20 0.00069 20.9 4.7 33 65-97 5-37 (42)
113 2izy_A CAMP-dependent protein 61.3 7.7 0.00026 23.2 3.0 31 24-56 9-39 (54)
114 4emc_A Monopolin complex subun 61.0 11 0.00038 28.4 4.4 32 62-93 20-51 (190)
115 1rtm_1 Mannose-binding protein 60.9 9.6 0.00033 25.4 3.8 25 67-91 2-26 (149)
116 2pms_C Pneumococcal surface pr 60.7 14 0.00049 26.1 4.7 55 41-97 32-89 (125)
117 3hh0_A Transcriptional regulat 60.5 19 0.00064 25.0 5.3 53 46-98 63-116 (146)
118 1lq7_A Alpha3W; three helix bu 60.2 22 0.00074 22.2 5.0 32 46-81 13-44 (67)
119 2er8_A Regulatory protein Leu3 60.1 8.1 0.00028 23.1 3.0 22 76-97 49-70 (72)
120 1gd2_E Transcription factor PA 59.8 11 0.00036 24.0 3.6 32 64-95 31-62 (70)
121 2zxx_A Geminin; coiled-coil, c 59.3 12 0.00043 24.4 3.9 26 64-89 36-61 (79)
122 1fxk_A Prefoldin; archaeal pro 59.3 23 0.00079 22.6 5.3 34 62-95 65-98 (107)
123 3he5_B Synzip2; heterodimeric 59.3 19 0.00066 21.4 4.4 35 63-97 11-45 (52)
124 3htk_A Structural maintenance 59.3 24 0.00083 20.6 5.3 27 67-93 31-57 (60)
125 3m9b_A Proteasome-associated A 59.2 8 0.00027 30.3 3.5 36 63-98 55-97 (251)
126 3mud_A DNA repair protein XRCC 59.1 15 0.00053 27.2 4.9 49 44-95 120-168 (175)
127 1wlq_A Geminin; coiled-coil; 2 58.9 19 0.00065 23.8 4.8 33 64-96 33-65 (83)
128 3m91_A Proteasome-associated A 58.7 25 0.00085 21.0 5.0 34 62-95 16-49 (51)
129 4ani_A Protein GRPE; chaperone 58.7 17 0.00059 27.5 5.2 31 63-93 67-97 (213)
130 4ani_A Protein GRPE; chaperone 58.7 11 0.00038 28.5 4.2 37 59-95 56-92 (213)
131 1xaw_A Occludin; coiled-coil, 58.3 48 0.0016 23.7 7.3 75 15-97 57-137 (140)
132 1deb_A APC protein, adenomatou 58.1 26 0.0009 21.3 5.0 23 62-84 10-32 (54)
133 3oja_B Anopheles plasmodium-re 57.9 14 0.00048 30.0 4.9 34 64-97 546-579 (597)
134 2zqm_A Prefoldin beta subunit 57.7 22 0.00076 23.0 5.1 31 64-94 79-109 (117)
135 2jn6_A Protein CGL2762, transp 57.4 2.1 7.2E-05 27.0 -0.1 44 6-55 5-49 (97)
136 3jv1_A P22 protein; MAM33 fami 56.5 6.9 0.00024 28.4 2.6 26 11-36 136-161 (182)
137 3s4r_A Vimentin; alpha-helix, 55.8 24 0.00082 23.2 5.0 68 15-94 17-88 (93)
138 1ses_A Seryl-tRNA synthetase; 55.6 26 0.00088 28.5 6.1 44 50-95 54-97 (421)
139 1am9_A Srebp-1A, protein (ster 55.5 22 0.00076 22.5 4.7 24 71-94 52-75 (82)
140 1lwu_B Fibrinogen beta chain; 55.4 22 0.00074 28.4 5.5 46 48-95 16-61 (323)
141 3m9b_A Proteasome-associated A 55.1 9.2 0.00031 29.9 3.2 28 63-90 69-96 (251)
142 3u1c_A Tropomyosin alpha-1 cha 55.1 10 0.00035 25.2 3.1 16 23-38 1-16 (101)
143 2xdj_A Uncharacterized protein 55.0 19 0.00065 23.4 4.3 23 71-93 22-44 (83)
144 3mq7_A Bone marrow stromal ant 54.9 20 0.00068 25.3 4.6 26 64-89 73-98 (121)
145 3q8t_A Beclin-1; autophagy, AT 54.8 24 0.00082 23.3 4.9 22 62-83 4-25 (96)
146 2ve7_C Kinetochore protein NUF 54.4 13 0.00044 28.4 3.9 37 62-98 141-177 (250)
147 2aze_B Transcription factor E2 54.2 20 0.00067 24.2 4.4 37 61-97 5-41 (106)
148 3kqg_A Langerin, C-type lectin 54.1 11 0.00036 25.9 3.1 21 64-84 18-38 (182)
149 1kd8_A GABH AIV, GCN4 acid bas 54.1 26 0.00088 19.8 4.1 29 64-92 3-31 (36)
150 3u06_A Protein claret segregat 53.9 13 0.00044 30.4 4.1 31 62-92 10-40 (412)
151 3u06_A Protein claret segregat 53.9 20 0.00069 29.2 5.2 33 63-95 4-36 (412)
152 1p32_A Mitochondrial matrix pr 53.7 8.1 0.00028 28.5 2.6 26 11-36 161-186 (209)
153 1yqf_A Hypothetical protein LM 53.6 8.7 0.0003 28.3 2.8 26 11-36 157-182 (203)
154 3he4_A Synzip6; heterodimeric 53.6 34 0.0012 20.6 4.9 29 64-92 26-54 (56)
155 3tnu_B Keratin, type II cytosk 53.4 26 0.0009 23.8 5.0 34 61-94 35-68 (129)
156 3ljm_A Coil Ser L9C; de novo d 52.6 26 0.00088 18.9 4.1 25 64-88 3-27 (31)
157 2zqm_A Prefoldin beta subunit 52.6 33 0.0011 22.2 5.3 38 63-100 14-51 (117)
158 3p8c_D Wiskott-aldrich syndrom 52.5 18 0.00063 28.5 4.6 43 62-104 50-92 (279)
159 1zxa_A CGMP-dependent protein 52.4 22 0.00076 22.5 4.2 32 62-93 25-56 (67)
160 3q0x_A Centriole protein; cent 51.8 21 0.00072 27.4 4.7 41 48-94 163-203 (228)
161 3na7_A HP0958; flagellar bioge 51.6 20 0.0007 26.8 4.6 36 60-95 88-123 (256)
162 3c3g_A Alpha/beta peptide with 51.3 30 0.001 19.2 4.9 18 64-81 9-26 (33)
163 4h22_A Leucine-rich repeat fli 51.2 28 0.00096 23.8 4.8 33 62-94 44-76 (103)
164 2hy6_A General control protein 51.1 31 0.001 19.3 4.2 20 64-83 10-29 (34)
165 1g6u_A Domain swapped dimer; d 51.0 24 0.00083 20.7 3.9 26 70-95 21-46 (48)
166 3s4r_A Vimentin; alpha-helix, 51.0 30 0.001 22.7 4.8 32 61-92 62-93 (93)
167 2wq1_A General control protein 50.8 30 0.001 19.2 4.9 23 67-89 5-27 (33)
168 3a2a_A Voltage-gated hydrogen 50.5 37 0.0013 21.0 4.8 33 61-93 10-42 (58)
169 4emc_A Monopolin complex subun 50.4 23 0.00078 26.7 4.6 33 62-94 27-59 (190)
170 1hlo_A Protein (transcription 50.0 11 0.00038 23.7 2.5 18 66-83 61-78 (80)
171 4e61_A Protein BIM1; EB1-like 50.0 31 0.0011 23.7 4.9 26 61-86 17-42 (106)
172 4din_B CAMP-dependent protein 49.8 0.067 2.3E-06 42.0 -9.9 46 13-60 15-60 (381)
173 1fxk_A Prefoldin; archaeal pro 49.5 35 0.0012 21.7 5.0 40 62-101 8-47 (107)
174 3u1c_A Tropomyosin alpha-1 cha 49.2 31 0.0011 22.7 4.8 31 64-94 25-55 (101)
175 1lwu_C Fibrinogen gamma chain; 49.1 29 0.001 27.7 5.3 34 61-94 25-58 (323)
176 3l4f_A RHO guanine nucleotide 48.9 17 0.00057 22.8 3.1 46 62-107 14-59 (61)
177 2w83_C C-JUN-amino-terminal ki 48.6 40 0.0014 22.0 5.0 35 62-96 37-71 (77)
178 3vmx_A Voltage-gated hydrogen 48.6 40 0.0014 20.1 4.6 30 63-92 5-34 (48)
179 2ast_A S-phase kinase-associat 48.6 26 0.0009 24.2 4.5 51 17-72 106-157 (159)
180 2v71_A Nuclear distribution pr 48.4 31 0.0011 25.7 5.1 30 63-92 50-79 (189)
181 1fzc_C Fibrin; blood coagulati 48.1 29 0.001 27.6 5.2 35 61-95 17-51 (319)
182 3v1a_A Computational design, M 47.9 36 0.0012 20.3 4.3 32 48-81 15-46 (48)
183 1j1v_A Chromosomal replication 47.7 37 0.0013 22.0 4.8 50 42-93 44-93 (94)
184 2aze_A Transcription factor DP 47.6 34 0.0012 24.9 5.0 36 60-95 3-38 (155)
185 1wt6_A Myotonin-protein kinase 47.3 37 0.0013 22.3 4.8 29 67-95 43-71 (81)
186 1uo4_A General control protein 47.0 36 0.0012 19.0 4.1 19 64-82 10-28 (34)
187 1p9i_A Cortexillin I/GCN4 hybr 46.9 33 0.0011 18.5 3.8 19 65-83 9-27 (31)
188 3lay_A Zinc resistance-associa 46.6 50 0.0017 24.0 5.9 34 50-83 101-134 (175)
189 3csx_A Putative uncharacterize 46.6 18 0.00062 23.8 3.1 35 58-92 11-45 (81)
190 2xcs_B DNA gyrase subunit B, D 46.5 32 0.0011 30.4 5.5 76 12-87 566-662 (692)
191 1gk7_A Vimentin; intermediate 46.5 38 0.0013 19.0 5.3 34 61-94 5-38 (39)
192 3na7_A HP0958; flagellar bioge 46.1 31 0.0011 25.8 4.9 34 63-96 47-80 (256)
193 1fxk_C Protein (prefoldin); ar 46.0 29 0.00099 23.2 4.3 29 64-92 10-38 (133)
194 1c1g_A Tropomyosin; contractIl 46.0 21 0.00073 24.6 3.7 7 67-73 18-24 (284)
195 2oa5_A Hypothetical protein BQ 45.7 18 0.00062 25.1 3.2 24 62-85 8-31 (110)
196 3qv0_A Mitochondrial acidic pr 45.6 13 0.00046 28.3 2.8 26 11-36 181-206 (227)
197 3qh9_A Liprin-beta-2; coiled-c 45.6 46 0.0016 21.9 5.0 26 62-87 19-44 (81)
198 3q8t_A Beclin-1; autophagy, AT 45.5 39 0.0013 22.2 4.8 34 62-95 11-44 (96)
199 3c3f_A Alpha/beta peptide with 45.4 39 0.0013 18.9 4.9 19 64-82 10-28 (34)
200 3mq9_A Bone marrow stromal ant 45.4 25 0.00086 27.9 4.4 29 66-94 433-461 (471)
201 4abx_A DNA repair protein RECN 45.2 42 0.0014 23.6 5.2 70 14-86 39-111 (175)
202 2inr_A DNA topoisomerase 4 sub 45.2 70 0.0024 27.2 7.3 69 18-86 391-478 (514)
203 3viq_B Mating-type switching p 45.2 15 0.00052 24.3 2.6 25 72-96 4-28 (85)
204 1ic2_A Tropomyosin alpha chain 45.0 52 0.0018 20.6 5.1 31 62-92 41-71 (81)
205 1q06_A Transcriptional regulat 44.9 69 0.0023 21.6 6.6 33 64-96 81-113 (135)
206 1joc_A EEA1, early endosomal a 44.8 43 0.0015 22.7 5.1 29 61-89 17-45 (125)
207 1am9_A Srebp-1A, protein (ster 44.8 19 0.00065 22.9 3.0 26 64-89 52-77 (82)
208 2zdi_C Prefoldin subunit alpha 44.3 27 0.00094 24.1 4.0 26 64-89 114-139 (151)
209 2p1m_A SKP1-like protein 1A; F 44.3 46 0.0016 23.1 5.3 51 17-72 105-156 (160)
210 1wt6_A Myotonin-protein kinase 44.2 47 0.0016 21.8 4.8 34 62-95 31-64 (81)
211 3oja_A Leucine-rich immune mol 44.0 36 0.0012 27.1 5.1 32 62-93 442-473 (487)
212 1wle_A Seryl-tRNA synthetase; 43.9 31 0.0011 28.9 5.0 34 62-95 116-149 (501)
213 3oa7_A Head morphogenesis prot 43.9 38 0.0013 25.8 5.0 37 64-100 39-75 (206)
214 3twe_A Alpha4H; unknown functi 43.2 36 0.0012 17.8 4.1 20 65-84 4-23 (27)
215 2wvr_A Geminin; DNA replicatio 43.0 35 0.0012 26.1 4.6 31 65-95 111-141 (209)
216 2p22_A Suppressor protein STP2 43.0 96 0.0033 22.7 7.0 67 25-97 13-94 (174)
217 1c1g_A Tropomyosin; contractIl 42.9 38 0.0013 23.2 4.6 11 67-77 25-35 (284)
218 3tq7_B Microtubule-associated 42.9 17 0.00058 23.8 2.6 30 63-92 2-31 (82)
219 3t97_B Nuclear pore complex pr 42.8 49 0.0017 20.8 4.6 31 62-92 17-47 (65)
220 3swk_A Vimentin; cytoskeleton, 42.4 27 0.00092 22.6 3.5 25 65-89 3-27 (86)
221 3tul_A Cell invasion protein S 42.2 59 0.002 23.8 5.6 39 64-102 64-102 (158)
222 3mtu_A Tropomyosin alpha-1 cha 42.2 45 0.0015 21.0 4.5 18 66-83 13-30 (75)
223 3uul_A Utrophin; spectrin repe 42.1 60 0.0021 20.1 5.7 35 59-93 75-109 (118)
224 3ilw_A DNA gyrase subunit A; D 42.1 61 0.0021 27.3 6.4 70 18-87 353-441 (470)
225 3kin_B Kinesin heavy chain; mo 41.9 37 0.0013 23.0 4.3 28 62-89 89-116 (117)
226 2v4h_A NF-kappa-B essential mo 41.8 62 0.0021 22.3 5.4 29 65-93 79-107 (110)
227 3cvf_A Homer-3, homer protein 41.8 9.1 0.00031 25.0 1.1 28 62-89 13-40 (79)
228 2zvf_A Alanyl-tRNA synthetase; 41.8 30 0.001 23.8 3.9 32 43-81 27-58 (171)
229 3s9g_A Protein hexim1; cyclin 41.8 51 0.0017 22.6 4.9 28 61-88 64-91 (104)
230 2cpt_A SKD1 protein, vacuolar 41.7 78 0.0027 21.3 5.9 43 44-86 42-84 (117)
231 3ol1_A Vimentin; structural ge 41.5 51 0.0017 22.3 5.0 31 62-92 20-50 (119)
232 2oto_A M protein; helical coil 41.5 44 0.0015 23.3 4.8 19 75-93 56-74 (155)
233 3e98_A GAF domain of unknown f 41.3 24 0.00081 26.8 3.5 17 64-80 74-90 (252)
234 3swy_A Cyclic nucleotide-gated 41.2 53 0.0018 19.2 5.2 32 62-93 5-36 (46)
235 3a7p_A Autophagy protein 16; c 41.1 53 0.0018 23.8 5.2 36 61-96 102-137 (152)
236 2gkw_A TNF receptor-associated 40.5 52 0.0018 23.3 5.1 35 64-98 2-36 (192)
237 3swf_A CGMP-gated cation chann 40.5 66 0.0023 20.7 5.1 27 62-88 7-33 (74)
238 1a93_A Coiled coil, LZ, MYC pr 40.5 47 0.0016 18.4 3.9 26 62-87 7-32 (34)
239 2qgu_A Probable signal peptide 40.3 25 0.00084 25.8 3.4 25 10-35 175-200 (211)
240 2oa5_A Hypothetical protein BQ 40.1 18 0.00063 25.0 2.5 24 71-94 10-33 (110)
241 1dip_A Delta-sleep-inducing pe 40.1 13 0.00044 24.3 1.6 22 68-89 14-35 (78)
242 3cve_A Homer protein homolog 1 39.7 61 0.0021 20.6 4.8 26 64-89 9-34 (72)
243 3cve_A Homer protein homolog 1 39.7 40 0.0014 21.6 3.9 28 67-94 5-32 (72)
244 3pxg_A Negative regulator of g 39.6 38 0.0013 27.1 4.7 86 9-96 327-440 (468)
245 3v7d_A Suppressor of kinetocho 39.5 27 0.00094 24.7 3.5 51 17-72 113-164 (169)
246 3tnu_B Keratin, type II cytosk 39.3 25 0.00087 23.9 3.2 36 61-96 28-63 (129)
247 4a5x_A MITD1, MIT domain-conta 39.2 56 0.0019 20.8 4.7 43 44-87 40-82 (86)
248 3tnu_A Keratin, type I cytoske 38.9 30 0.001 23.6 3.5 31 62-92 38-68 (131)
249 1rtm_1 Mannose-binding protein 38.8 24 0.00082 23.3 2.9 22 74-95 2-23 (149)
250 2xv5_A Lamin-A/C; structural p 38.7 49 0.0017 20.9 4.2 13 66-78 16-28 (74)
251 2zhg_A Redox-sensitive transcr 38.6 96 0.0033 21.4 6.7 34 61-94 88-122 (154)
252 4dzo_A Mitotic spindle assembl 38.3 59 0.002 22.4 4.9 25 62-86 4-28 (123)
253 2bni_A General control protein 38.3 52 0.0018 18.3 3.9 18 64-81 10-27 (34)
254 3cvf_A Homer-3, homer protein 37.9 66 0.0023 20.8 4.8 29 65-93 9-37 (79)
255 3av0_A DNA double-strand break 37.8 54 0.0018 25.4 5.2 39 12-54 341-380 (386)
256 4dzo_A Mitotic spindle assembl 37.8 38 0.0013 23.3 3.9 24 69-92 4-27 (123)
257 2zxx_A Geminin; coiled-coil, c 37.5 70 0.0024 20.8 4.9 29 66-94 31-59 (79)
258 2wg5_A General control protein 37.3 30 0.001 23.1 3.2 28 71-98 9-36 (109)
259 1joc_A EEA1, early endosomal a 37.3 62 0.0021 21.9 4.9 27 66-92 8-34 (125)
260 1js3_A DDC;, DOPA decarboxylas 37.0 29 0.00098 27.2 3.5 45 13-59 3-47 (486)
261 1dkg_A Nucleotide exchange fac 36.9 60 0.002 23.9 5.1 33 62-94 42-78 (197)
262 1yzm_A FYVE-finger-containing 36.7 68 0.0023 19.2 4.5 32 49-82 17-48 (51)
263 3ghg_A Fibrinogen alpha chain; 36.6 32 0.0011 29.8 3.9 35 64-98 119-153 (562)
264 1fxk_C Protein (prefoldin); ar 36.3 60 0.002 21.6 4.6 26 66-91 92-117 (133)
265 2akf_A Coronin-1A; coiled coil 36.2 54 0.0018 17.9 4.4 23 62-84 6-28 (32)
266 3w03_C DNA repair protein XRCC 36.0 56 0.0019 24.3 4.8 31 64-94 147-177 (184)
267 4dk0_A Putative MACA; alpha-ha 35.8 1.4E+02 0.0047 22.4 7.6 49 48-96 101-149 (369)
268 2w83_C C-JUN-amino-terminal ki 35.3 41 0.0014 21.9 3.5 11 63-73 10-20 (77)
269 3qne_A Seryl-tRNA synthetase, 35.2 27 0.00091 29.4 3.2 34 62-95 71-104 (485)
270 2v4h_A NF-kappa-B essential mo 34.9 74 0.0025 21.9 4.9 30 62-91 24-53 (110)
271 2v71_A Nuclear distribution pr 34.9 69 0.0024 23.8 5.1 29 63-91 96-124 (189)
272 2dq0_A Seryl-tRNA synthetase; 34.6 30 0.001 28.5 3.4 83 13-95 11-102 (455)
273 3u0c_A Invasin IPAB, 62 kDa an 34.5 85 0.0029 23.6 5.5 42 61-102 109-150 (201)
274 2ve7_C Kinetochore protein NUF 34.0 13 0.00044 28.4 1.0 30 64-93 150-179 (250)
275 3tnu_A Keratin, type I cytoske 33.6 24 0.00083 24.1 2.3 29 63-91 32-60 (131)
276 1m1j_C Fibrinogen gamma chain; 33.5 68 0.0023 26.3 5.3 70 23-92 54-135 (409)
277 3zwh_Q Myosin-9; Ca-binding pr 33.4 9.9 0.00034 22.4 0.2 30 66-95 3-32 (45)
278 1txp_A HnRNP C, heterogeneous 33.4 58 0.002 17.4 3.8 22 65-86 2-23 (28)
279 1yke_B RNA polymerase II holoe 33.3 1.3E+02 0.0044 21.3 6.9 52 46-97 72-127 (151)
280 1uru_A Amphiphysin; endocytosi 33.2 90 0.0031 22.2 5.5 47 46-92 20-67 (244)
281 1ykh_B RNA polymerase II holoe 33.2 1.2E+02 0.004 20.9 7.0 48 47-94 73-124 (132)
282 3nmd_A CGMP dependent protein 33.0 77 0.0026 20.3 4.4 19 77-95 41-59 (72)
283 3k40_A Aromatic-L-amino-acid d 32.9 37 0.0013 27.0 3.6 44 14-59 4-47 (475)
284 4h22_A Leucine-rich repeat fli 32.8 93 0.0032 21.2 5.1 26 67-92 56-81 (103)
285 1fzc_B Fibrin; blood coagulati 32.7 35 0.0012 27.2 3.4 34 61-94 29-62 (328)
286 2yf4_A MAZG-like nucleoside tr 32.5 37 0.0013 24.5 3.2 28 10-37 48-94 (154)
287 3uun_A Dystrophin; triple heli 32.3 89 0.0031 19.2 5.7 35 59-93 75-109 (119)
288 3iv1_A Tumor susceptibility ge 32.0 62 0.0021 21.0 3.9 11 62-72 25-35 (78)
289 2w6b_A RHO guanine nucleotide 31.9 90 0.0031 19.1 4.9 24 64-87 12-35 (56)
290 3i00_A HIP-I, huntingtin-inter 31.8 82 0.0028 21.6 4.8 8 86-93 71-78 (120)
291 3ni0_A Bone marrow stromal ant 31.4 1.1E+02 0.0036 20.8 5.1 21 75-95 66-86 (99)
292 3a5t_A Transcription factor MA 31.4 2 6.8E-05 29.7 -3.6 19 59-77 28-46 (107)
293 4i0x_B ESAT-6-like protein MAB 31.3 1E+02 0.0034 19.5 5.0 36 61-96 10-45 (103)
294 2dfs_A Myosin-5A; myosin-V, in 31.0 65 0.0022 29.4 5.2 23 70-92 978-1000(1080)
295 2xu6_A MDV1 coiled coil; prote 31.0 93 0.0032 19.9 4.6 27 50-81 14-40 (72)
296 2ocy_A RAB guanine nucleotide 30.9 77 0.0026 22.9 4.7 35 64-98 117-151 (154)
297 1cii_A Colicin IA; bacteriocin 30.8 1.8E+02 0.006 25.2 7.5 50 44-93 316-380 (602)
298 3bas_A Myosin heavy chain, str 30.7 1.1E+02 0.0036 19.6 5.1 35 61-95 13-47 (89)
299 1yhn_B RILP, RAB interacting l 30.7 31 0.0011 21.8 2.2 28 71-98 5-32 (65)
300 2kxw_B Sodium channel protein 30.6 27 0.00093 18.3 1.6 13 13-25 13-25 (27)
301 3ghg_A Fibrinogen alpha chain; 30.3 20 0.0007 31.0 1.7 30 63-92 103-133 (562)
302 1pwb_A SP-D, PSP-D, pulmonary 30.3 55 0.0019 22.3 3.7 27 64-90 26-52 (177)
303 1xkp_A Putative membrane-bound 30.2 43 0.0015 25.6 3.4 66 9-75 164-235 (246)
304 2p90_A Hypothetical protein CG 30.1 43 0.0015 26.3 3.4 41 46-90 217-257 (319)
305 2vj4_A Protein MXIC, MXIC; sec 29.8 68 0.0023 25.3 4.6 66 10-76 118-189 (294)
306 2f1m_A Acriflavine resistance 29.5 1.6E+02 0.0054 21.2 7.0 37 59-95 95-131 (277)
307 2v6x_A Vacuolar protein sortin 29.5 1E+02 0.0035 19.0 5.1 42 44-86 37-78 (85)
308 2nov_A DNA topoisomerase 4 sub 29.1 75 0.0026 26.9 5.0 79 12-93 359-454 (496)
309 2eqb_B RAB guanine nucleotide 28.8 33 0.0011 23.2 2.2 19 64-82 14-32 (97)
310 1deq_A Fibrinogen (alpha chain 28.7 60 0.002 26.9 4.2 41 47-91 122-162 (390)
311 3lss_A Seryl-tRNA synthetase; 28.7 53 0.0018 27.5 4.0 35 61-95 98-137 (484)
312 2lw1_A ABC transporter ATP-bin 28.5 83 0.0028 19.9 4.1 24 62-85 22-45 (89)
313 2dq3_A Seryl-tRNA synthetase; 28.5 17 0.00057 29.6 0.8 46 50-95 56-101 (425)
314 2lq4_p Lysophosphatidic acid r 28.5 8.6 0.00029 24.8 -0.7 29 65-93 51-79 (80)
315 1z0k_B FYVE-finger-containing 28.3 91 0.0031 19.8 4.2 21 61-81 45-65 (69)
316 2fxo_A Myosin heavy chain, car 28.1 1.1E+02 0.0037 20.7 4.9 30 66-95 94-123 (129)
317 3t97_B Nuclear pore complex pr 28.1 1.1E+02 0.0039 19.1 5.4 32 64-95 12-43 (65)
318 4aj5_K Spindle and kinetochore 28.0 1.1E+02 0.0036 21.6 4.8 46 42-87 16-75 (123)
319 1wlx_A Alpha-actinin 4; three- 28.0 1.2E+02 0.0042 21.1 5.2 51 45-97 30-87 (129)
320 4ath_A MITF, microphthalmia-as 27.2 1.3E+02 0.0045 19.6 6.1 8 46-53 37-44 (83)
321 4e1o_A HDC, histidine decarbox 27.1 58 0.002 25.7 3.8 45 13-59 8-52 (481)
322 3o59_X DNA polymerase II large 27.0 30 0.001 27.7 2.1 32 48-79 166-199 (300)
323 3vmx_A Voltage-gated hydrogen 27.0 1E+02 0.0036 18.3 4.8 30 64-93 13-42 (48)
324 4ati_A MITF, microphthalmia-as 26.2 41 0.0014 22.8 2.4 31 66-96 78-111 (118)
325 2ve7_A Kinetochore protein HEC 26.1 87 0.003 24.4 4.6 26 70-95 186-211 (315)
326 3kqg_A Langerin, C-type lectin 25.9 1.4E+02 0.0047 20.1 5.1 33 62-94 6-41 (182)
327 2v66_B Nuclear distribution pr 25.9 1.4E+02 0.0048 20.4 5.1 9 86-94 52-60 (111)
328 1lwu_C Fibrinogen gamma chain; 25.7 94 0.0032 24.7 4.8 30 68-97 25-54 (323)
329 3oja_A Leucine-rich immune mol 25.6 1.1E+02 0.0038 24.2 5.2 25 68-92 441-465 (487)
330 3viq_A SWI5-dependent recombin 25.3 1.1E+02 0.0037 21.1 4.5 26 66-91 4-29 (122)
331 1buu_A Protein (mannose-bindin 25.3 92 0.0032 21.0 4.1 25 66-90 20-44 (168)
332 1r8i_A TRAC; VIRB5, helical bu 25.1 41 0.0014 24.6 2.4 28 62-89 15-42 (213)
333 2cly_B ATP synthase D chain, m 25.0 62 0.0021 23.1 3.3 18 78-95 104-121 (160)
334 1i84_S Smooth muscle myosin he 24.7 1.2E+02 0.0039 27.7 5.7 35 61-95 856-890 (1184)
335 2jis_A Cysteine sulfinic acid 24.1 1.9E+02 0.0064 22.9 6.3 58 13-72 36-97 (515)
336 3rrk_A V-type ATPase 116 kDa s 24.0 97 0.0033 23.6 4.4 32 64-95 94-125 (357)
337 4ghu_A TNF receptor-associated 24.0 1.2E+02 0.0042 21.6 4.8 31 67-97 5-35 (198)
338 2xz3_A Maltose ABC transporter 23.9 1.3E+02 0.0045 23.5 5.3 24 65-88 382-405 (463)
339 2zdi_C Prefoldin subunit alpha 23.5 1.2E+02 0.0042 20.6 4.5 32 64-95 100-131 (151)
340 3r4h_A Coiled coil helix CC-TE 23.5 99 0.0034 16.8 4.6 26 63-88 3-28 (34)
341 1x8y_A Lamin A/C; structural p 23.4 1.5E+02 0.005 18.8 4.6 22 70-91 29-50 (86)
342 1uix_A RHO-associated kinase; 23.4 1.5E+02 0.0051 18.8 4.9 25 62-86 4-28 (71)
343 3fpp_A Macrolide-specific effl 23.3 1.6E+02 0.0054 21.9 5.4 40 59-98 111-150 (341)
344 1lwu_A Fibrinogen alpha-1 chai 23.2 1.1E+02 0.0036 21.5 4.1 46 47-92 3-52 (119)
345 2z5i_A TM, general control pro 23.1 1.2E+02 0.0042 17.8 4.9 32 63-94 13-44 (52)
346 3gpv_A Transcriptional regulat 23.1 1.8E+02 0.0062 19.7 5.8 79 10-97 59-137 (148)
347 3iyn_Q Protein IX, PIX, hexon- 23.0 1.7E+02 0.0057 20.9 5.1 29 64-92 100-128 (140)
348 2p4v_A Transcription elongatio 23.0 1.4E+02 0.0048 20.9 4.8 28 59-86 43-70 (158)
349 1k8v_A Neuropeptide F; moniezi 23.0 22 0.00074 20.6 0.4 15 9-23 13-27 (40)
350 2vkl_A RV0948C/MT0975; helical 22.9 1.3E+02 0.0044 19.2 4.3 38 61-98 11-48 (90)
351 1avy_A Fibritin, gpwac M; bact 22.9 1.6E+02 0.0054 18.9 5.3 32 65-96 11-42 (74)
352 1qzv_F Plant photosystem I: su 22.9 53 0.0018 23.7 2.5 24 76-99 13-36 (154)
353 2y9y_A Imitation switch protei 22.8 32 0.0011 28.2 1.5 84 10-98 125-213 (374)
354 3mq9_A Bone marrow stromal ant 22.7 80 0.0027 24.9 3.8 17 80-96 401-417 (471)
355 4b4t_K 26S protease regulatory 22.7 1.3E+02 0.0043 24.5 5.1 33 64-96 58-90 (428)
356 3vp6_A Glutamate decarboxylase 22.5 2.4E+02 0.0081 22.5 6.7 61 11-73 19-85 (511)
357 2cnq_A Phosphoribosylaminoimid 22.5 81 0.0028 25.0 3.8 13 12-24 259-271 (306)
358 3oq9_A Tumor necrosis factor r 22.1 1.3E+02 0.0045 19.3 4.2 32 5-36 37-71 (86)
359 1fzc_C Fibrin; blood coagulati 22.1 59 0.002 25.9 2.9 34 64-97 13-46 (319)
360 2dnx_A Syntaxin-12; snare, HAB 22.0 1.4E+02 0.0047 20.2 4.5 47 46-96 32-78 (130)
361 3tul_A Cell invasion protein S 21.8 2.3E+02 0.008 20.5 6.1 41 47-87 85-125 (158)
362 3iox_A AGI/II, PA; alpha helix 21.7 1E+02 0.0035 26.2 4.4 14 74-87 46-59 (497)
363 3gaa_A Uncharacterized protein 21.6 83 0.0029 23.5 3.6 41 46-90 202-242 (252)
364 3e35_A Uncharacterized protein 21.6 1.3E+02 0.0043 23.8 4.8 48 46-97 220-270 (325)
365 3vem_A Helicase protein MOM1; 21.5 1.4E+02 0.0046 20.8 4.3 18 59-76 36-53 (115)
366 3f6n_A Virion-associated prote 21.4 1.7E+02 0.0059 20.6 4.9 31 64-94 4-34 (129)
367 3ghg_C Fibrinogen gamma chain; 21.4 1.8E+02 0.0061 24.0 5.7 19 27-45 58-76 (411)
368 1zhc_A Hypothetical protein HP 21.3 1.6E+02 0.0054 18.3 5.7 32 55-87 38-69 (76)
369 1cxz_B Protein (PKN); protein- 21.3 1.1E+02 0.0038 20.1 3.7 24 67-90 61-84 (86)
370 2okj_A Glutamate decarboxylase 21.3 2.4E+02 0.0083 22.0 6.4 59 12-72 17-81 (504)
371 1di1_A Aristolochene synthase; 20.9 2.4E+02 0.0083 20.4 7.8 68 15-84 189-266 (300)
372 1t3j_A Mitofusin 1; coiled coi 20.9 1.5E+02 0.0051 19.8 4.3 18 65-82 50-67 (96)
373 3ku8_A GYRA14, DNA gyrase subu 20.8 1.1E+02 0.0039 21.8 4.0 37 15-51 28-70 (156)
374 1z0j_B FYVE-finger-containing 20.7 1.3E+02 0.0046 18.4 3.8 21 61-81 34-54 (59)
375 3rvy_A ION transport protein; 20.7 21 0.00072 26.4 0.0 26 69-94 256-281 (285)
376 3pbf_A Pulmonary surfactant-as 20.5 1E+02 0.0036 19.9 3.5 21 65-85 5-25 (148)
377 3htk_A Structural maintenance 20.5 1.3E+02 0.0046 17.2 5.5 32 63-94 20-51 (60)
378 1ez3_A Syntaxin-1A; three heli 20.5 1.7E+02 0.0059 18.8 4.6 24 63-86 13-36 (127)
379 1hwt_C Protein (heme activator 20.5 40 0.0014 20.3 1.3 19 77-95 59-77 (81)
380 3jsv_C NF-kappa-B essential mo 20.4 89 0.003 21.0 3.1 34 62-95 54-87 (94)
381 1hs7_A Syntaxin VAM3; UP-and-D 20.4 1.9E+02 0.0066 19.1 4.9 38 46-87 21-59 (97)
382 2xev_A YBGF; tetratricopeptide 20.4 89 0.0031 18.4 2.9 14 41-54 90-103 (129)
383 1lrz_A FEMA, factor essential 20.3 1.2E+02 0.0042 23.8 4.4 41 12-53 179-228 (426)
384 3qh9_A Liprin-beta-2; coiled-c 20.2 1.2E+02 0.0042 19.8 3.7 23 69-91 19-41 (81)
No 1
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=100.13 Aligned_cols=53 Identities=32% Similarity=0.582 Sum_probs=37.1
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+||++||++|||+.+|+.+|+++|++||++||++++.|++++++|+++|.+|+
T Consensus 1 ~~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~e 53 (53)
T 2yy0_A 1 NSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 53 (53)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 48999999999966699999999999999999999999999999999999885
No 2
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=97.40 E-value=0.0001 Score=46.01 Aligned_cols=39 Identities=31% Similarity=0.596 Sum_probs=33.8
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCC
Q psy16078 15 AFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGD 56 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~ 56 (111)
-.|.||++ -|+..|++.|..|- .+||.||++||-++|=.
T Consensus 8 p~R~YL~~-~V~p~L~~GL~~la--k~rP~DPi~~LA~~Ll~ 46 (55)
T 3g36_A 8 PTRAYLDQ-TVVPILLQGMAVLA--KERPPNPIEFLASYLLK 46 (55)
T ss_dssp CHHHHHHT-TTHHHHHHHHHHHH--HHCCSCHHHHHHHHHHH
T ss_pred cHHHHHHH-HhHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH
Confidence 36999985 59999999999995 68999999999988744
No 3
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=96.45 E-value=0.0013 Score=45.20 Aligned_cols=40 Identities=25% Similarity=0.568 Sum_probs=35.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCC
Q psy16078 15 AFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGD 56 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~ 56 (111)
+-+.||.+.||-+-|-.++|.|..+ +|+||++|++++|..
T Consensus 39 ~ce~YlqkhgI~eLLqe~tv~Ll~~--RPeDPv~FLaeYF~k 78 (95)
T 4f9k_A 39 GCELYVQLHGIQQVLKDCIVHLCIS--KPERPMKFLREHFEK 78 (95)
T ss_dssp TTHHHHHHTCTTTTTHHHHHHHHHH--CCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 4578999999999999999988654 999999999999865
No 4
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=94.94 E-value=0.019 Score=30.88 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
++++|.-||+.|.++|..|++.|..|+
T Consensus 1 eidalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHHHhc
Confidence 357888999999999999999998876
No 5
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=94.54 E-value=0.095 Score=29.10 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
++.+|++|++.|+.+|..|+=+|.-|+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6788899999999999888888887764
No 6
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=94.12 E-value=0.093 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
++.++...++.|++|+++|.-|..++..+|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 677888888888888888888888877654
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.51 E-value=0.18 Score=30.97 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
...++.|..+|.+|+.+|..|..++..|+..|
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888888888888888887765
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.16 E-value=0.18 Score=33.73 Aligned_cols=36 Identities=8% Similarity=0.216 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
...++.|..||..|+.+|..|+.++..|+.-|.++-
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 356889999999999999999999999998887753
No 9
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=93.01 E-value=0.15 Score=35.15 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+.+++..|+.++++|+.++..|.++++.|..+|.+.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999873
No 10
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.61 E-value=0.28 Score=30.53 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+++.|..+|.+|+.+|..|+.++..|+.-|
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777776554
No 11
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=92.34 E-value=0.32 Score=30.11 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+++.|..+|..|+.+|..|..++..|+..|
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777776655
No 12
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=92.23 E-value=0.3 Score=31.35 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
|..|+.++..|+.+++.|++++..|+.+|..+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667888888899999999999999999987764
No 13
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.13 E-value=0.18 Score=31.13 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
..++.|..+|..|+.++..|..++..|+..|
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665555443
No 14
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=91.01 E-value=0.32 Score=31.82 Aligned_cols=33 Identities=9% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..++.|..||..|+.+|..|+.++..|+.-|.+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888888766644
No 15
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=90.34 E-value=0.52 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
|..|+.++..+..+++.|..++..|+.+|.++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66788888888888899999999998888753
No 16
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=90.26 E-value=0.085 Score=34.88 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=33.6
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
|-++.||-- .-.++++-||..+.+|..++.+|+.+|.-|+.-
T Consensus 3 DLVKtHLm~--AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 3 DLVKNHLMY--AVREEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CSTTTGGGG--TCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555544 336889999999999999999999999998854
No 17
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=89.04 E-value=0.53 Score=25.18 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
+..|++.|+.|+++|..|+-+|.-|
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3467788888888888887777654
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.47 E-value=0.59 Score=28.41 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+++.|+.++.+|+.+++.|+++++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666544
No 19
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.36 E-value=1.3 Score=27.45 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
...+.|..+..+|..++..|..++..|+..+..+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888887776544
No 20
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=86.11 E-value=1.4 Score=28.85 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
|..|+.++..+..+++.|..++..|+.+|.++.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777777777777778888888888777664
No 21
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=85.71 E-value=2.1 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
.+-++|..++++-..+|..|+.++.+|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3557888888888888999998888875
No 22
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.83 E-value=1.7 Score=27.73 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 46 PLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
|++||+.- ..++..|..++++|+.++..|+.++..|
T Consensus 45 Ai~YI~~L-------~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 45 ATEYIQYM-------RRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777754 3456677778888888888887777654
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.58 E-value=2.1 Score=26.25 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.-+..|..+.+.|..++..|..++..|..++..+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888777654
No 24
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=84.11 E-value=1.1 Score=27.29 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+.+..+++.|..++.+|+.++..|+.
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 25
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=84.06 E-value=1.5 Score=24.14 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 70 DLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
|++.|+++|..|+++|.-|+=.+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777776665543
No 26
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=83.99 E-value=1.3 Score=29.63 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+.|+.+++.|+.++..|.+++.++.++|...
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 47889999999999999999999999888643
No 27
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=83.90 E-value=1.7 Score=26.98 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
-++.|..++..|..++..|..++..|+..+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666665554
No 28
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=83.88 E-value=0.77 Score=27.98 Aligned_cols=34 Identities=9% Similarity=0.292 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+..+|+.. ++++...++.|.+++.+|+.++..++
T Consensus 21 ~~~EVD~F---Ld~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 21 DEDEVNEF---LAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655 45556677777777777777776654
No 29
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=83.40 E-value=1.7 Score=26.77 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.+++|-++++.|+.++-.|++++.+=..+|.++|.+
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 467777778888888888888777777777777654
No 30
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=83.38 E-value=2.5 Score=27.29 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 46 PLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
|++||++- ..+...|..+++.|+.++..|.+++..
T Consensus 45 A~~yI~~L-------~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 45 AKLHIKKL-------EDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777654 344567777777788887777777664
No 31
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=83.18 E-value=2.6 Score=25.67 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.-+..|..+...|..++..|..++..|..++..+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888888888887776653
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.03 E-value=2.6 Score=27.89 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
|.-|+-|+++||.++..|..++.+
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 33
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=82.34 E-value=3 Score=27.38 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
-.+.|....+.+.+++.+|+..+..|...+..|
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 108 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTLLSV 108 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888888888888888888777654
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.33 E-value=3.1 Score=25.22 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.-++.|..+...|..++..|..++..|+.++..+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777888888888888888888887776554
No 35
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=81.66 E-value=2 Score=27.41 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+..|...++.|..++..|..++..|..++..|
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555566666666666666665544
No 36
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=81.60 E-value=4.1 Score=24.16 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAE-------LDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~-------i~~L~~e~~eL~~~l~ 93 (111)
.++..|..|++.|+.+ |.-|+++|..|+.+++
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 3556666666666654 5677888888877764
No 37
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=81.35 E-value=2.2 Score=29.50 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
-++.+++.+.+.++..|..++.+|+..++
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve 35 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVS 35 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 38
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=81.32 E-value=3.1 Score=34.73 Aligned_cols=80 Identities=10% Similarity=0.118 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcChH----------HHHHHHHHHHhcCCCCCCC-HHHHHHHhhCCCCCCHHHHHHHH---HHH-------
Q psy16078 13 KEAFRRYLEQSGVV----------DAITSALVMLYSIEEKPED-PLDFIRRNLGDERPEVAEYEAVL---QDL------- 71 (111)
Q Consensus 13 rEeFRkYLE~~GVl----------DaLTkvLV~LYEe~ekP~d-alefir~~Lg~~~p~~~e~e~Lk---~E~------- 71 (111)
.++|+++|-+.||+ +.+-+.+.+=- +-+|.+ +-+|||++|.... ...+++|+ ..+
T Consensus 171 ~~~Y~~~l~~~gi~~~~~~~~~d~~~f~~~~~~al--~~~~~~~~~~fvr~yll~~~--~~~i~~~q~~~~~~~~~r~~~ 246 (483)
T 3euj_A 171 ITDYHSFMFDLGILPKRLRSSSDRNKFYKLIEASL--YGGISSVITKSLRDYLLPEN--SGVRQAFQDMEAALRENSGGS 246 (483)
T ss_dssp HHHHHHHHHHTTCSSSCCCSHHHHHHHHHHHHHHH--SCSCCHHHHHTGGGSSCCCC--TTTTHHHHC------------
T ss_pred HHHHHHHHHhcCcccccccccccHHHHHHHHHHhc--CCCCCccHHHHHHHHcCCCC--chhHHHHHHHHHHHHHhhccc
Confidence 58888888886442 34445444321 567766 6789999999944 44455555 444
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 72 ----------DEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 72 ----------~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..|+..|+..++++.+|+..|+...
T Consensus 247 ~~~~~~~~~~~~Lr~~i~~~~~~i~~LN~~L~~~~ 281 (483)
T 3euj_A 247 GGSISAESVANILRKTIQREQNRILQLNQGLQNIA 281 (483)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHGGGGSSCC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7888899999999999998887654
No 39
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=80.69 E-value=4 Score=26.61 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=25.6
Q ss_pred CHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 45 DPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 45 dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
.|++||+.-- .....+..+.+.|+.++..|..++.+|+
T Consensus 49 ~A~~YI~~L~-------~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 49 KATAYILSVQ-------AEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4788887653 3445666666777777777777777664
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.49 E-value=4.4 Score=26.22 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
++.....-+.+|..++.+...+|.+|+.+|.+|.+
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444445666677777777777778888877754
No 41
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=80.37 E-value=2.4 Score=25.57 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
++.|..++..|..++..|..++..|+.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555544444444443
No 42
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=79.99 E-value=4.3 Score=31.41 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKER---LSKYEV 97 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~---l~~~e~ 97 (111)
.++.+..++.++..++.+|+.++..|+.+ +..+.|
T Consensus 100 ~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p 137 (357)
T 3rrk_A 100 VLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAA 137 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 36677777888888888888888888887 776665
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.95 E-value=3.4 Score=29.27 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
+..|+.++..++.+++.+++++.+|+
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~ 116 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELK 116 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333
No 44
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=78.91 E-value=2.9 Score=29.18 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQ 102 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~~ 102 (111)
.-.+.|....+++.+++.+|++.+..|...+..|+...+.+
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 135 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSA 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567888899999999999999999999999998765443
No 45
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=78.46 E-value=4.2 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.|+.|..++.+|..++++|+.-+.
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhc
Confidence 345555555555555555554443
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=78.17 E-value=3.5 Score=27.35 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+.....+|.+++..|+.++..|+.++..+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666655544
No 47
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=77.91 E-value=3.9 Score=30.63 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+||.+=|+..|+-- -.-+..|+.+|..|++++++|..+..+..+|+++
T Consensus 137 ~~p~e~i~elid~~---ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 137 ENPAEVIRELICYC---LDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp SCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444321 3557788888888888888888888888777764
No 48
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=77.68 E-value=7.5 Score=22.79 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+..|...+++|.+++..|+.++.-|+..|
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 455667777777777777777777776654
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.47 E-value=4.2 Score=28.31 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
..|+.|+.+++.|+.+++.+..+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888877766554
No 50
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=77.43 E-value=4.5 Score=26.52 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
-.++.|+.|++.|+-.++++.-++..++.+..
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34666667777777777777766666665543
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.37 E-value=4.9 Score=26.53 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQ 80 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~ 80 (111)
-+++.||.+|..|.+++++
T Consensus 27 mEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777776665555
No 52
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=77.08 E-value=1.5 Score=33.57 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Q psy16078 61 VAEYEAVLQDLDEAKAE---LDQLTATVANLKERLS 93 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~---i~~L~~e~~eL~~~l~ 93 (111)
..+.+.|+++|.+|+.+ +.+|++|++.|++-|.
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667788888777754 4455667777776654
No 53
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=76.60 E-value=2.8 Score=27.95 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=25.3
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 61 VAEYEAVL----QDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 61 ~~e~e~Lk----~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.+.+.+|+ .+++.-+.+|+.|+.+|...+.+|..+...
T Consensus 39 kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 39 KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35566666 456666777777777777777777766553
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=76.49 E-value=5.5 Score=26.09 Aligned_cols=42 Identities=12% Similarity=0.318 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQP 103 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~~~ 103 (111)
.+++.++.++..|+..+..+..++.+++..+..++.+...+|
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CP 51 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCP 51 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 356778888888888888888888888888888866433333
No 55
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=76.47 E-value=4.2 Score=22.77 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~ 82 (111)
++.|..++.+|..++.+|+
T Consensus 9 VEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 4455555555555554444
No 56
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=75.82 E-value=3.8 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.338 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+.+|..++..|+.++..|.+++..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776654
No 57
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=75.42 E-value=2.9 Score=23.28 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHhhCC
Q psy16078 41 EKPEDPLDFIRRNLGD 56 (111)
Q Consensus 41 ekP~dalefir~~Lg~ 56 (111)
.+|.|+++|..+||+.
T Consensus 21 ~qP~di~~f~a~yF~~ 36 (41)
T 2izx_A 21 QQPPDLVEFAVEYFTR 36 (41)
T ss_dssp HCCSCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHH
Confidence 6899999999999864
No 58
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=74.75 E-value=5.2 Score=25.85 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+.+++++.|-.+|+.|+.++..|..+|..
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45778888888888888888888888865
No 59
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=74.55 E-value=15 Score=28.88 Aligned_cols=38 Identities=5% Similarity=0.120 Sum_probs=28.8
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+.+.+... ..+++.|..+++.|++++++|+++...+..
T Consensus 176 ~~~~~n~~---~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 176 LKDLFNVD---AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHTCC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44445442 578999999999999999999888766655
No 60
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=74.46 E-value=6.5 Score=26.11 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 69 QDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.||.+|..+|..|+.+|..|+..+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en 69 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKEN 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 61
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=74.38 E-value=4.3 Score=30.64 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+..++.++..|..++..|..++..|.++++++..
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688889999999999999999999999887754
No 62
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=74.38 E-value=12 Score=24.87 Aligned_cols=38 Identities=11% Similarity=0.299 Sum_probs=30.4
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.-||.+| ..+++.-+.+++.++.+|+..++.|.+|+..
T Consensus 43 ~~LKkkl------~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 43 AALKKHK------ENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3366666 5788888999999999999999999888753
No 63
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=74.27 E-value=7.6 Score=25.96 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+..|..+++.|+.++..+.++++.++.+++.
T Consensus 57 ~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 64
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=74.04 E-value=3.1 Score=24.43 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.5
Q ss_pred CCCCCCHHHHHHHhhCC
Q psy16078 40 EEKPEDPLDFIRRNLGD 56 (111)
Q Consensus 40 ~ekP~dalefir~~Lg~ 56 (111)
-.+|.|+++|..+||..
T Consensus 28 r~qP~Di~~Faa~yF~~ 44 (50)
T 2kyg_A 28 RQQPPDLVEFAVEYFTR 44 (50)
T ss_dssp HHCCSCHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHH
Confidence 36899999999999863
No 65
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=74.01 E-value=7.5 Score=22.10 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
+.|+.|..++.+|..++++|+..+.
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3455666666666666666655443
No 66
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=73.07 E-value=5.9 Score=25.67 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
...+.....+|..++..|..++..|+..+..+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666555443
No 67
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=73.06 E-value=5.4 Score=22.41 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
...+..+++++|+.++.-|..++..
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666543
No 68
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=73.06 E-value=5.1 Score=21.13 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
+|+.|.-+|+-++..|+.+.++|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 56777777777777777777665
No 69
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=72.43 E-value=11 Score=21.39 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+.+|...+++|..+...|+.++..|+.-+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45677777777777777777777666554
No 70
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=71.78 E-value=11 Score=22.35 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy16078 59 PEVAEYEAVLQDL-DEAKAELDQLTATVAN 87 (111)
Q Consensus 59 p~~~e~e~Lk~E~-~~lk~~i~~L~~e~~e 87 (111)
-+..|++.+|+|+ ++++.++..++.+|.+
T Consensus 4 ~~~~dle~~KqEIL~E~RkElqK~K~EIIe 33 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKELQKVKEEIIE 33 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999985 7888888888888765
No 71
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=71.43 E-value=6 Score=23.80 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 68 LQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+.-+++|..++..|+.+|..|..++..+.
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888877654
No 72
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=70.55 E-value=7.1 Score=23.16 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 71 LDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++.|..++..|+..+..|.+.|+
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666677777777777776664
No 73
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.54 E-value=8.5 Score=27.18 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+|..|.+++.++-.++++|.+++..|..++.
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 34555666666666666666666666666664
No 74
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=70.42 E-value=6.6 Score=33.23 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=52.5
Q ss_pred HHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHH-HhhCCCCCC----------------------HHHHHHHHHHHHH
Q psy16078 17 RRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIR-RNLGDERPE----------------------VAEYEAVLQDLDE 73 (111)
Q Consensus 17 RkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir-~~Lg~~~p~----------------------~~e~e~Lk~E~~~ 73 (111)
++.|-+.+.++.|.. |....-|+..++.|+ .++.. |+ ..++..+.++...
T Consensus 112 k~~L~~~~Fl~~L~~-----fdkd~I~~~~~~~l~~~y~~~--p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~p 184 (536)
T 3err_A 112 RSIIMRENFIPTIVN-----FSAEEISDAIREKMKKNYMSN--PSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEP 184 (536)
T ss_dssp TTGGGCTTHHHHHHH-----CCGGGCCHHHHHHHHHHTTTS--TTCSHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHh-----cCcccCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhh
Confidence 456666666666654 555556667777776 47665 32 2568889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q psy16078 74 AKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 74 lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
++.++.+|+.++.++.++|...-
T Consensus 185 Lk~eLk~lE~eL~e~e~eL~~ll 207 (536)
T 3err_A 185 LRNELQKLEDDAKDNQQKLEALL 207 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888886543
No 75
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=70.42 E-value=7.2 Score=25.89 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
-+.|..+++.++.+|..|++++.+|+
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555554444
No 76
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=69.92 E-value=9.1 Score=25.56 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+...|..++..|+.+++.|..++..+...+..|
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888888776654
No 77
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=69.79 E-value=5.2 Score=27.30 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.+|+.|+.|++.|+++++.|+-++.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666555
No 78
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=69.69 E-value=8.4 Score=21.50 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+|...+++|..++..|+.++.-|++=|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566777777777777777777666544
No 79
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=69.62 E-value=7.1 Score=29.55 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=34.9
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
|+=|+..|.. +.......|....+.|.+++++|...+..|...+..++.
T Consensus 63 L~eIk~~l~~--~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~ 111 (249)
T 3qao_A 63 LKKIQQILDD--PLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKG 111 (249)
T ss_dssp HHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555 333456778888888888888888888888887766544
No 80
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=69.55 E-value=9.7 Score=20.88 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
++..|.+|.+++..++-.|++++..|.
T Consensus 2 evaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456777777777777777777776654
No 81
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=68.92 E-value=6.6 Score=23.03 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
|+..-+|++..+++|..|+.+..+|.
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554443
No 82
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=68.72 E-value=9.8 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 67 VLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
|...+++|-.+...|+.++..|+
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 33334444444444444444333
No 83
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=68.49 E-value=8.3 Score=25.17 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++=|+..+.. +...-.+.|....+.+.+++.+|+..+..|...+.
T Consensus 61 l~~I~~~l~~--~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 105 (108)
T 2vz4_A 61 LDEVAALLDD--PAADPRAHLRRQHELLSARIGKLQKMAAAVEQAME 105 (108)
T ss_dssp HHHHHHHHTC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444544 22233456777778888888888877777776654
No 84
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=68.48 E-value=9.7 Score=22.44 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
.+++.+|..|++.|..++..|+..+.-|
T Consensus 19 peelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777777777777777766666555444
No 85
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=68.42 E-value=17 Score=25.06 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 10 EKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 10 dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
+-.+=.|.++|-+.|+--.=-+-++.++...+. +...-.+.|....+.+.+++.+|++....|.
T Consensus 45 dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~----------------~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~ 108 (142)
T 3gp4_A 45 DLRWILFTRQMRRAGLSIEALIDYLALFREGEH----------------TLEARAELLKKQRIELKNRIDVMQEALDRLD 108 (142)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCGG----------------GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777633323333333322211 1122345666677777777777777777777
Q ss_pred HHhccccc
Q psy16078 90 ERLSKYEV 97 (111)
Q Consensus 90 ~~l~~~e~ 97 (111)
..+..|+.
T Consensus 109 ~~i~~~~~ 116 (142)
T 3gp4_A 109 FKIDNYDT 116 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 86
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=68.12 E-value=2.4 Score=33.97 Aligned_cols=55 Identities=20% Similarity=0.431 Sum_probs=44.4
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcChH-----HHHHHHHHHHhcCCCCCCCHHHHHHHhhCCC
Q psy16078 1 MSFIPETPNEKNKEAFRRYLEQSGVV-----DAITSALVMLYSIEEKPEDPLDFIRRNLGDE 57 (111)
Q Consensus 1 ~~~~~~~~~dsKrEeFRkYLE~~GVl-----DaLTkvLV~LYEe~ekP~dalefir~~Lg~~ 57 (111)
|.|.|.. +.-++.|..+|++.|.= ..|.+-|..+..+...|...++||+.+++..
T Consensus 169 ~~FlPe~--~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~ 228 (364)
T 3l6a_A 169 QKMLPEI--DQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPK 228 (364)
T ss_dssp GGGSCGG--GCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHH
T ss_pred HHhCCcc--ccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcc
Confidence 4688864 34458899999999962 5788888999988888888999999999764
No 87
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=67.77 E-value=15 Score=22.19 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..++.|-.++++|-.++..|...+..|+..+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888877776554
No 88
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=67.09 E-value=7.8 Score=26.44 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCCCC--C--CCHHHH-HHHhhCCCC---------CCHH----------------------------H
Q psy16078 26 VDAITSALVMLYSIEEK--P--EDPLDF-IRRNLGDER---------PEVA----------------------------E 63 (111)
Q Consensus 26 lDaLTkvLV~LYEe~ek--P--~dalef-ir~~Lg~~~---------p~~~----------------------------e 63 (111)
+-+|.+|+-+|-+.+.. | ++-+-+ +++.|||.+ |... +
T Consensus 4 L~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~~ 83 (117)
T 3kin_B 4 LSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELT 83 (117)
T ss_dssp HHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCCC
T ss_pred HHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcCC
Confidence 45778888888764321 2 345555 477788753 4322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+.+.+.++..+.++..|+..+..|..+|.++
T Consensus 84 ~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 84 AEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777788888888888888888877664
No 89
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.58 E-value=4.9 Score=32.64 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+++.|++++.++..+++.++.++.+++.++
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444
No 90
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=66.54 E-value=11 Score=25.06 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+-..|...+..++.+|..|++++.+|+.-.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888887543
No 91
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=66.53 E-value=6.4 Score=26.50 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+..|+.++.+|++++..|+.+++.|++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467788888888888888888877763
No 92
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=66.44 E-value=2.2 Score=24.02 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+.+++++..+..|+.+.+.++.+...++..|
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888887777776655
No 93
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=66.16 E-value=1.8 Score=33.12 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..++..|++||++|++++.+|+.++..+.
T Consensus 18 ~~~~~~l~~eN~~Lk~e~~~l~~~~~~~~ 46 (255)
T 2j5u_A 18 VVDLKNTYTENQHLKERLEELAQLESEVA 46 (255)
T ss_dssp --------CTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678889999999999998887766544
No 94
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=66.04 E-value=13 Score=27.27 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
++=|+..|... ...-.+.|....+++.+++.+|++....|...+..++.
T Consensus 66 l~~i~~~~~~~--~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 66 LEEMKKAQDLE--MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp HHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666552 22334667888888888888888888888877766553
No 95
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=65.91 E-value=10 Score=27.71 Aligned_cols=62 Identities=10% Similarity=0.095 Sum_probs=17.9
Q ss_pred HHHhcChHHHHHHHHHHHhcCCC--CCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 19 YLEQSGVVDAITSALVMLYSIEE--KPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 19 YLE~~GVlDaLTkvLV~LYEe~e--kP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
++++--+=|.|-+-|-.||+++- .|.+++.-.+. ....+..|+.++..++.+|..|..++.+
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~-------~~~~I~~L~~El~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDA-------LLNTLAILQKELKSKEQEIRRLKEVIAL 93 (152)
T ss_dssp ---------------------------CHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcccccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666677778888866 22222211110 1245666666666666666666654443
No 96
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=65.87 E-value=10 Score=23.50 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
.++...+.|+.+|+..|..|+.++..++
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455556666666666666666655544
No 97
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=65.71 E-value=10 Score=24.41 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.-|+.|-..+.+-+.+|..|++++..|..++...+++
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4577888888888899999999999999999887764
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=65.03 E-value=15 Score=23.92 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
++....++.+++.++..|..++..+...+..
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556655665555555555555443
No 99
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=63.67 E-value=32 Score=23.67 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=24.6
Q ss_pred HHHhhCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 50 IRRNLGDERPE-VAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 50 ir~~Lg~~~p~-~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
|...|.+..++ ..-++.|..++.+++.+++.|+.++....
T Consensus 19 ~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 19 ASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445552222 24477777777777777777777766554
No 100
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=63.56 E-value=7 Score=30.48 Aligned_cols=51 Identities=20% Similarity=0.401 Sum_probs=40.0
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCh-----------------HHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCC
Q psy16078 1 MSFIPETPNEKNKEAFRRYLEQSGV-----------------VDAITSALVMLYSIEEKPEDPLDFIRRNLGDE 57 (111)
Q Consensus 1 ~~~~~~~~~dsKrEeFRkYLE~~GV-----------------lDaLTkvLV~LYEe~ekP~dalefir~~Lg~~ 57 (111)
|.|.|.+. | |++||++.|+ ...+.+-|..++.+...|.+.++||+.+++..
T Consensus 172 ~~f~P~~~----~--~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~ 239 (339)
T 1ug3_A 172 KEFLPEGQ----D--IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQ 239 (339)
T ss_dssp GGTSCTTC----C--HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHH
T ss_pred HHhCCCch----h--HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChh
Confidence 46788543 2 8899999983 34566778888899999999999999998753
No 101
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=63.46 E-value=13 Score=24.09 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..|...+.+-+.+|++|..-+-.|+++|.+|-
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYt 37 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYV 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888888888887773
No 102
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=63.46 E-value=12 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
.+-+.|..++..++.+|..|++++.+|+.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666553
No 103
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=62.90 E-value=18 Score=20.26 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
+-++.|..++++|+.++++|+.-
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 34666666666666666666543
No 104
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=62.81 E-value=25 Score=21.97 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.+=.|.++|-+.|+=-.=-+-++.++..++. . +-..-.+.|....+.+.+++++|+.....|...
T Consensus 4 ~rL~~I~~lr~lGfsL~eIk~~l~~~~~~~~--~-------------~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 4 QRLKFIRHARQLGFSLESIRELLSIRIDPEH--H-------------TCQESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHCGGG--C-------------BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhCCCc--c-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888744444445556543321 0 112335678889999999999999999999998
Q ss_pred hccccc
Q psy16078 92 LSKYEV 97 (111)
Q Consensus 92 l~~~e~ 97 (111)
+..++.
T Consensus 69 ~~~~~~ 74 (99)
T 1q08_A 69 NDACCG 74 (99)
T ss_dssp HHHCCC
T ss_pred HHHHhc
Confidence 888865
No 105
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=62.66 E-value=9.1 Score=28.83 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=24.7
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
.||.+-||..++-. -..+..|+.+|..|++++++|..+.
T Consensus 146 ~nPaE~irELi~~~---L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 146 ENPAEVIRELICYC---LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp SCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666665555431 3556777777777777777776654
No 106
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=62.37 E-value=20 Score=20.90 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
+..|.....+|..++.+|+.++..|++.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666543
No 107
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.29 E-value=16 Score=25.21 Aligned_cols=30 Identities=7% Similarity=0.080 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.++..|+..+..++..+..|++.|++|..+
T Consensus 42 ~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 42 DDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 456666666666666666666666666543
No 108
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.05 E-value=10 Score=25.72 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
|-..+++.|+.++..|..++.....++..|...|
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4445566666666666666666666666665444
No 109
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=61.77 E-value=12 Score=30.25 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.++++|+.++..|+++...|++++++++.+++.+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666544
No 110
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=61.45 E-value=21 Score=20.69 Aligned_cols=31 Identities=6% Similarity=0.133 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..|..--++|.++|..|+.+++.|.+.|..+
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555667777777777777777776543
No 111
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=61.38 E-value=21 Score=21.37 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+..|+.++..|-.++..|...+...+.+|..+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777777777777666665555555443
No 112
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=61.32 E-value=20 Score=20.93 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+.|-+.++..-.+|+--+++|.+|+.++..++-
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777888888888888888877653
No 113
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=61.25 E-value=7.7 Score=23.24 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCC
Q psy16078 24 GVVDAITSALVMLYSIEEKPEDPLDFIRRNLGD 56 (111)
Q Consensus 24 GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~ 56 (111)
|+=+-|..+.+.+. -.+|.|+++|..++|+.
T Consensus 9 ~l~~lL~~f~~evl--r~qP~Di~~Faa~YF~~ 39 (54)
T 2izy_A 9 GLTELLQGYTVEVL--RQQPPDLVDFAVEYFTR 39 (54)
T ss_dssp THHHHHHHHHHHHH--HHCCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHH
Confidence 44444444444443 47899999999999986
No 114
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.96 E-value=11 Score=28.40 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.-|..|..||..|.++++....+|+.|+.+|+
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666555555555554444444444443
No 115
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=60.88 E-value=9.6 Score=25.37 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
|++++..|+.++..|+.++..|+..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6777777888888888877777764
No 116
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=60.66 E-value=14 Score=26.08 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHhhCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 41 EKPEDPLDFIRRNLGDERPEVAEYEAVLQD---LDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 41 ekP~dalefir~~Lg~~~p~~~e~e~Lk~E---~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
-+|+|.=+|++.-+-. |...+++.=+.+ +++|+.+|.+|..++.+|..++...+.
T Consensus 32 ~~e~d~e~y~ke~~~~--~~qsele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 32 IDESESEDYAKEGFRA--PLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp TCC------------C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cchhhhhHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666787776655 656666655554 467888888888888888888887765
No 117
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=60.47 E-value=19 Score=24.99 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHHhhCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 46 PLDFIRRNLGDERPE-VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 46 alefir~~Lg~~~p~-~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
+++=|+..|.....+ ..-.+.|....+.|.+++.+|+..+..|...+..|+..
T Consensus 63 sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~ 116 (146)
T 3hh0_A 63 SLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKE 116 (146)
T ss_dssp CHHHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345566666653222 33456788889999999999999999999888877654
No 118
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=60.19 E-value=22 Score=22.19 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=20.2
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy16078 46 PLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQL 81 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L 81 (111)
|++--.+.||+++ -++.|+..-++|+.+|++|
T Consensus 13 aleekvkalgggg----rieelkkkweelkkkieel 44 (67)
T 1lq7_A 13 ALEEKVKALGGGG----RIEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHSCCSS----SHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHHh
Confidence 3444456788743 3566777777777777665
No 119
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=60.12 E-value=8.1 Score=23.14 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q psy16078 76 AELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 76 ~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
..+..|+.++..|...|..+..
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555566666655543
No 120
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=59.83 E-value=11 Score=23.97 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+..|...+.+|...+..|..++..|+.++..+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555443
No 121
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=59.34 E-value=12 Score=24.44 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
-..|..++.+++.+|..|+.+|..|+
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555544443
No 122
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.33 E-value=23 Score=22.60 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+-...|....+.+..+|..|.+++..+..++..+
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555554433
No 123
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.32 E-value=19 Score=21.43 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
.+..|+++|-+|..--..|++-|..|+..+..++.
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777776654
No 124
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=59.25 E-value=24 Score=20.62 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
++..+..+...+......|..+++++.
T Consensus 31 ~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 31 AKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444443
No 125
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=59.24 E-value=8 Score=30.26 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcccccc
Q psy16078 63 EYEAVLQDLDEA-------KAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 63 e~e~Lk~E~~~l-------k~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
.+..|+.++..| ...+.++++++..|+++++++..+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355555555555 555555666666666666666544
No 126
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=59.06 E-value=15 Score=27.24 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=36.8
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++|.+-||..++-. ...+..|+++++.|..++...+.++..++..|.+.
T Consensus 120 ~~paE~ireli~~A---ertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 120 ENPAEVIRELICYC---LDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp SCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666541 35688899999999999988888888888877653
No 127
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=58.91 E-value=19 Score=23.83 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+..--.||.+|...|+.+..++..|+.....+.
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888888888888888887776553
No 128
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=58.75 E-value=25 Score=21.04 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..+..|...|..|-.-......+|..|+++|.++
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666665543
No 129
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=58.72 E-value=17 Score=27.48 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+++.|+.++++++.++-++..+...++.+..
T Consensus 67 ~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 67 QIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666666666665543
No 130
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=58.68 E-value=11 Score=28.52 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
|..++++.|..+++.|+.++++|+.+..-+.+.+..|
T Consensus 56 ~~~~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~ 92 (213)
T 4ani_A 56 PTAEELAAAKAQIAELEAKLSEMEHRYLRLYADFENF 92 (213)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888888888888888877777776554
No 131
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=58.30 E-value=48 Score=23.69 Aligned_cols=75 Identities=20% Similarity=0.365 Sum_probs=51.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcC-CCCCCCHHHHHHHhhCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q psy16078 15 AFRRYLEQSGVVDAITSALVMLYSI-EEKPEDPLDFIRRNLGDERPEVAEYEAVLQD-----LDEAKAELDQLTATVANL 88 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~LYEe-~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E-----~~~lk~~i~~L~~e~~eL 88 (111)
+|..|.+=..-|+++++-|..|..+ ..-|.+.-+|-. . ..++..++.- ..+-+++..-|...+..+
T Consensus 57 dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~----i----~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHI 128 (140)
T 1xaw_A 57 GLQEYKSLQSVLDEINKELSRLDKELDDYREESEEYMA----A----ADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHI 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHH----H----HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH----H----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999744 222444445531 1 3566666442 455566777888888888
Q ss_pred HHHhccccc
Q psy16078 89 KERLSKYEV 97 (111)
Q Consensus 89 ~~~l~~~e~ 97 (111)
+..+..|+.
T Consensus 129 K~lI~~YD~ 137 (140)
T 1xaw_A 129 KKMVGDYDR 137 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 888877653
No 132
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=58.06 E-value=26 Score=21.33 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
-.|+.|+.||.-|+++...-...
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~ 32 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNH 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHH
Confidence 46788888888888776543333
No 133
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.91 E-value=14 Score=29.99 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
++++++..++.++++.+|++++..+++++++++.
T Consensus 546 ~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555666666666666666666554
No 134
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.71 E-value=22 Score=23.01 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
++.+..++..|..++..+..++.+++.+|..
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555666666665544
No 135
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=57.43 E-value=2.1 Score=27.00 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=24.5
Q ss_pred CCCChhhHHHHHHHHHh-cChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhC
Q psy16078 6 ETPNEKNKEAFRRYLEQ-SGVVDAITSALVMLYSIEEKPEDPLDFIRRNLG 55 (111)
Q Consensus 6 ~~~~dsKrEeFRkYLE~-~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg 55 (111)
.-+.+.|....+.|+.. ..-+..+.+.+ .- -|...-.|++++-.
T Consensus 5 ~ys~e~k~~~v~~~~~~~g~s~~~ia~~~----gI--s~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 5 TYSEEFKRDAVALYENSDGASLQQIANDL----GI--NRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCHHHHHHHHHHHTTGGGSCHHHHHHHH----TS--CHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCCChHHHHHHHH----Cc--CHHHHHHHHHHHhh
Confidence 34567777777778765 33344444433 11 24455566766654
No 136
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=56.53 E-value=6.9 Score=28.44 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhcChHHHHHHHHHHH
Q psy16078 11 KNKEAFRRYLEQSGVVDAITSALVML 36 (111)
Q Consensus 11 sKrEeFRkYLE~~GVlDaLTkvLV~L 36 (111)
.=+..|.+||+.-||=+.|+..|...
T Consensus 136 ~Lq~~l~~yLeeRGI~~~la~fl~~y 161 (182)
T 3jv1_A 136 HLVDSFTSYLSARGVNDTLANFIDQF 161 (182)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34679999999999999999988775
No 137
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=55.77 E-value=24 Score=23.16 Aligned_cols=68 Identities=15% Similarity=0.286 Sum_probs=39.7
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHh----hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 15 AFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRN----LGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~----Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
-|-.|+++--.+++=.++|-.=. ..++.. ++. .=..++..|+..++.+..+...|.-++..|.+
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i----------~~l~~~~~~~~~~--~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAEL----------EQLKGQGKSRLGD--LYEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHhhccCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999888888888775422 222221 110 01245666666666666666666666666655
Q ss_pred Hhcc
Q psy16078 91 RLSK 94 (111)
Q Consensus 91 ~l~~ 94 (111)
.+..
T Consensus 85 ~~~~ 88 (93)
T 3s4r_A 85 DIMR 88 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 138
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=55.61 E-value=26 Score=28.48 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=35.8
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+.+.+|. ...++.++|+.+..+++.++..|+++..++..++...
T Consensus 54 ~sk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 54 VAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344665 4567889999999999999999999999999888643
No 139
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=55.46 E-value=22 Score=22.52 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 71 LDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+..|+.++..|..++..|+..+++
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555554443
No 140
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=55.41 E-value=22 Score=28.36 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=34.4
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.+|++.+-. -....|..|+..++.|+++|..|+..+.++...+...
T Consensus 16 ~~ik~~~~~--~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~~~~ 61 (323)
T 1lwu_B 16 KEVKIRIES--TVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAP 61 (323)
T ss_dssp HHHHHHHHT--TTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSSB
T ss_pred HHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456666544 3345788899999999999999999988887776543
No 141
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=55.07 E-value=9.2 Score=29.92 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
..+.|+.++.++++++..|+.+++.|+.
T Consensus 69 rNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 69 RNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566889999999999999999998873
No 142
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.06 E-value=10 Score=25.19 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=10.3
Q ss_pred cChHHHHHHHHHHHhc
Q psy16078 23 SGVVDAITSALVMLYS 38 (111)
Q Consensus 23 ~GVlDaLTkvLV~LYE 38 (111)
+|.||+|-+-+-+|--
T Consensus 1 ~~~MdaIKkKm~~lk~ 16 (101)
T 3u1c_A 1 AGHMDAIKKKMQMLKL 16 (101)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHH
Confidence 4677777776666643
No 143
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.05 E-value=19 Score=23.43 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 71 LDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+-+|..+++.|+.++..|+++++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444444444444444444443
No 144
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.87 E-value=20 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
+..|+-|+.+|.+++.....+++.|+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 145
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.76 E-value=24 Score=23.27 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
+++++|..++..|+.+=+.|.+
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~ 25 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQ 25 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444443333333
No 146
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=54.37 E-value=13 Score=28.43 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..++.+..+.+++..+++.|..++.+++++|+++...
T Consensus 141 ~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 141 ETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999999888887654
No 147
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=54.23 E-value=20 Score=24.20 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
...+..|++|++.|..+-..|-+.+..++.+|+.+-.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999999999998888876653
No 148
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=54.10 E-value=11 Score=25.90 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e 84 (111)
+..|...++.|+.++..+...
T Consensus 18 ~~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 18 ASALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 149
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=54.06 E-value=26 Score=19.84 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+.+|..++++|..+...|+.++..|+.-+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35666777777777777777777666544
No 150
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.90 E-value=13 Score=30.35 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.++..|+..+.+++.++.+++.++++++.+|
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554
No 151
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.89 E-value=20 Score=29.22 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+...|..|+.+++++++.|.++++++++.++..
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777666544
No 152
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=53.66 E-value=8.1 Score=28.52 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhcChHHHHHHHHHHH
Q psy16078 11 KNKEAFRRYLEQSGVVDAITSALVML 36 (111)
Q Consensus 11 sKrEeFRkYLE~~GVlDaLTkvLV~L 36 (111)
.=+..|.+||+.-||=+.|+..|..+
T Consensus 161 ~Lq~~l~~yLeeRGI~~~la~fl~~y 186 (209)
T 1p32_A 161 ALYDHLMDFLADRGVDNTFADELVEL 186 (209)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34678999999999999999988876
No 153
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=53.62 E-value=8.7 Score=28.33 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhcChHHHHHHHHHHH
Q psy16078 11 KNKEAFRRYLEQSGVVDAITSALVML 36 (111)
Q Consensus 11 sKrEeFRkYLE~~GVlDaLTkvLV~L 36 (111)
.=+..|.+||+.-||=+.|+..|...
T Consensus 157 ~Lq~~l~~YLeeRGI~~~la~fl~~y 182 (203)
T 1yqf_A 157 DLLNCVMTYLEKRGVDEKLGEFVVLY 182 (203)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34678999999999999999988776
No 154
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=53.58 E-value=34 Score=20.61 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+..|..+++.|..-|..|++.|..|...+
T Consensus 26 varlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 45566677777777777777777776543
No 155
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.37 E-value=26 Score=23.81 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..++..|+..++.|+.+++.|+..+..|...|..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566666666666666666666555555555543
No 156
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=52.62 E-value=26 Score=18.90 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
.++|.+..+.|..++..|++.++-|
T Consensus 3 wealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777777776666665544
No 157
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.56 E-value=33 Score=22.16 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVES 100 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~ 100 (111)
.+..|+.++..+..++..|+.++.++...+..++.-++
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~ 51 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPD 51 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46666677777777777777777666666655555443
No 158
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=52.52 E-value=18 Score=28.51 Aligned_cols=43 Identities=9% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQPI 104 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~~~~ 104 (111)
+=+..|..+...+..+...|..++..|...+.++++..+....
T Consensus 50 dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ld~~~eevSL 92 (279)
T 3p8c_D 50 DIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKEEELSL 92 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccch
Confidence 3467799999999999999999999999999999887554433
No 159
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=52.43 E-value=22 Score=22.48 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
..+..|..++.+-..+|.+|+.++..+++-+.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44666666666666666666666665555543
No 160
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=51.76 E-value=21 Score=27.36 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=23.4
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+.||+|++. -+..+|.++..|.++++..+.+++.+.++|++
T Consensus 163 e~Ik~yLa~------R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~ 203 (228)
T 3q0x_A 163 SVVKQFLAF------RLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQ 203 (228)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666543 35566666666666666666666655555543
No 161
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.57 E-value=20 Score=26.82 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+.-++.+|..|++.++.++..|+.++.++..+++..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888877777777766666443
No 162
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=51.28 E-value=30 Score=19.22 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQL 81 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L 81 (111)
++.|..++.+|..++++|
T Consensus 9 vEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 334444444444444433
No 163
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=51.23 E-value=28 Score=23.83 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+.+..+++++.+...+++.++..+..|+.++..
T Consensus 44 E~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 44 EQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666655555555555443
No 164
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=51.08 E-value=31 Score=19.29 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~ 83 (111)
|+.|-.++.+|..++++|+.
T Consensus 10 VEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 10 VEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 45555555555555555543
No 165
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=51.02 E-value=24 Score=20.68 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 70 DLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
|++.|..++..|++.+.-|+++|+.+
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777888888888888877654
No 166
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=50.99 E-value=30 Score=22.66 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
...++.+..++..+..++..|...+..++.+|
T Consensus 62 r~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 62 RRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35677777778888888888888877777764
No 167
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.82 E-value=30 Score=19.18 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 67 VLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
|...+++|-.++..|+.++.-|+
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444333
No 168
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=50.50 E-value=37 Score=21.00 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
...+..|++-|..|-.+|+.|+..+.+....+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEie 42 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIE 42 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888777666554443
No 169
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=50.42 E-value=23 Score=26.71 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+...|..+++...++|..|+++++.++++...
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456667777777777777777777777766644
No 170
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=50.04 E-value=11 Score=23.67 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~ 83 (111)
.|+.++..|+.+++.|++
T Consensus 61 ~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444433
No 171
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=49.97 E-value=31 Score=23.66 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
..++..|..++.+|+..++.|+++-+
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888887643
No 172
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=49.77 E-value=0.067 Score=42.01 Aligned_cols=46 Identities=24% Similarity=0.500 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCC
Q psy16078 13 KEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPE 60 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~ 60 (111)
.++-+.||.+.||-+-|-+..|.|. -++|+||++|+++||..-...
T Consensus 15 ~~~~~~y~~~~~~~~~l~~~~~~~~--~~~p~~~~~~~~~~~~~l~~~ 60 (381)
T 4din_B 15 LKGCELYVQLHGIQQVLKDCIVHLC--ISKPERPMKFLREHFEKLEKE 60 (381)
T ss_dssp CCCSCCCSSSSCCSCCCCCCCSCSS--CSSSSCSSTTSSSCSCSSCCC
T ss_pred HHHHHHHhhhhChHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHhhhh
Confidence 4455679999998888888888885 589999999999999875443
No 173
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=49.53 E-value=35 Score=21.73 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESD 101 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~ 101 (111)
..+..|++++..+..++..|+.++.++...+..++.-+++
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d 47 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADD 47 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4567778888888888888888887777766666554443
No 174
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=49.17 E-value=31 Score=22.73 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
++.+..++..+..+...+..++..|+.++..
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 175
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=49.09 E-value=29 Score=27.71 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
...+..|+..+..++.+|.+|+.++.+|..++..
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888889999999999999888887754
No 176
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=48.88 E-value=17 Score=22.83 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCcC
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQPISDD 107 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~~~~~~~ 107 (111)
.++..|++++..+++=.++-.+....|..-+.++-...++..+.+-
T Consensus 14 Dev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~~~~~~~ 59 (61)
T 3l4f_A 14 DEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWDET 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 4555566666666665555555566666666666666666665443
No 177
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=48.63 E-value=40 Score=21.99 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..++.|..|.+-|+.++..+.+-...++.++..+|
T Consensus 37 ~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665555555555554
No 178
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=48.61 E-value=40 Score=20.11 Aligned_cols=30 Identities=7% Similarity=0.061 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+.+|+.-|..|-.++.+|+..+.++..++
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEi 34 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEI 34 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 456667777777667666666665555443
No 179
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=48.57 E-value=26 Score=24.25 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=39.2
Q ss_pred HHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q psy16078 17 RRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERP-EVAEYEAVLQDLD 72 (111)
Q Consensus 17 RkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p-~~~e~e~Lk~E~~ 72 (111)
-+||.=.|++|.-.+.+...... .+| +-||+.||-... +.+|-+++++||+
T Consensus 106 AnyL~I~~Lld~~c~~va~~i~g----kt~-eeir~~f~I~~d~t~eEe~~ir~en~ 157 (159)
T 2ast_A 106 ANYLDIKGLLDVTCKTVANMIKG----KTP-EEIRKTFNIKNDFTEEEEAQVRKENQ 157 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHSS----CCH-HHHHHHTTCCCCSCTTHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHcC----CCH-HHHHHHcCCCCCCCHHHHHHHHHhCC
Confidence 58999999999999999888743 455 569999998532 4466678887763
No 180
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=48.44 E-value=31 Score=25.74 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+++.+.+.+.+|+.++..|..++..++.++
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544444444
No 181
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=48.06 E-value=29 Score=27.64 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
...+..|+..++.++.+|..|+..+.+|..++...
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~ 51 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 51 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57888999999999999999999999998887653
No 182
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=47.92 E-value=36 Score=20.26 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=24.0
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQL 81 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L 81 (111)
.||++.=.. ---+||..|..-+.+|+.++.++
T Consensus 15 ~~I~qAk~~--rRfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 15 SFIHQAKAA--GRMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh--cChHHHHHHHHHHHHHHHHHHhh
Confidence 466666666 34789999999999988888753
No 183
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=47.71 E-value=37 Score=21.97 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 42 KPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 42 kP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.-...+.=|-+.||+ -+..-|--.-+.++++..+-..|...+.+|..+|.
T Consensus 44 ~t~~Sl~~IG~~fgg--rdHsTV~ha~~ki~~~~~~d~~~~~~i~~l~~~l~ 93 (94)
T 1j1v_A 44 LTNHSLPEIGDAFGG--RDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 93 (94)
T ss_dssp HSCCCHHHHHHHTTS--CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHCcCHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 334556668888988 56666666666666666666677777777766653
No 184
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=47.60 E-value=34 Score=24.92 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 60 EVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 60 ~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
...+++.|+.|...++.+|..-++.+.+|..|...|
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999888888887776554433
No 185
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=47.27 E-value=37 Score=22.29 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+..++.+...++..|..++..|+.+++.+
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666666666666554
No 186
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=46.97 E-value=36 Score=18.97 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~ 82 (111)
++.|-.++.+|..++.+|+
T Consensus 10 VEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 10 GEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4444444444444444443
No 187
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=46.92 E-value=33 Score=18.47 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~ 83 (111)
..|..||.+|+.++++|-.
T Consensus 9 asleaenkqlkakveella 27 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 188
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=46.58 E-value=50 Score=24.04 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=27.2
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
++.-+..+.|+...|++|..|+.+|+.++....-
T Consensus 101 L~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 101 YNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667779999999999999999998765443
No 189
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=46.57 E-value=18 Score=23.80 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 58 RPEVAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 58 ~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.|+.++++.|+.++..|+.+--+++-.+-+|-..|
T Consensus 11 ~~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEdL 45 (81)
T 3csx_A 11 NPTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEGL 45 (81)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 36668899999999999998888888877776654
No 190
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=46.50 E-value=32 Score=30.43 Aligned_cols=76 Identities=9% Similarity=0.216 Sum_probs=50.6
Q ss_pred hHHHH--HHHHHhcChHHHHHHHH------HHHhcCCCCCCCHHHHHHHhhCCCC-------------CCHHHHHHHHHH
Q psy16078 12 NKEAF--RRYLEQSGVVDAITSAL------VMLYSIEEKPEDPLDFIRRNLGDER-------------PEVAEYEAVLQD 70 (111)
Q Consensus 12 KrEeF--RkYLE~~GVlDaLTkvL------V~LYEe~ekP~dalefir~~Lg~~~-------------p~~~e~e~Lk~E 70 (111)
||-+| ++.-++..+++-|-+++ +.+....+.|.+|.+-+...|+-.. =+..+.++|..|
T Consensus 566 rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIL~m~L~rLt~le~~kl~~E 645 (692)
T 2xcs_B 566 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAE 645 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhCCCHHHHHHHHhhccCCCHHHHHHHHHhHHHHhhhHHHHHHHHH
Confidence 44455 35666777776665543 3445567778888888888776321 134678888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16078 71 LDEAKAELDQLTATVAN 87 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~e 87 (111)
.++|+++++.|+.-+..
T Consensus 646 ~~~l~~~i~~l~~iL~~ 662 (692)
T 2xcs_B 646 YNELLNYISELETILAD 662 (692)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 88888888888776554
No 191
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=46.46 E-value=38 Score=19.04 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..++..|-.-++....++..|++++..|..++..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777778888999999999999988864
No 192
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.12 E-value=31 Score=25.76 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.+.+++.++.+++.++..++.++.++++++.+++
T Consensus 47 ~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 47 AILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455555444443
No 193
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=46.03 E-value=29 Score=23.24 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+..++.+++.+.+++..|+..+.++..-+
T Consensus 10 ~q~l~~~~~~l~~~~~~l~~~i~e~~~~~ 38 (133)
T 1fxk_C 10 LNIYQSQVELIQQQMEAVRATISELEILE 38 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444333
No 194
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=46.01 E-value=21 Score=24.58 Aligned_cols=7 Identities=43% Similarity=0.563 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy16078 67 VLQDLDE 73 (111)
Q Consensus 67 Lk~E~~~ 73 (111)
+...+++
T Consensus 18 ~~~~~~~ 24 (284)
T 1c1g_A 18 ALDRADE 24 (284)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 195
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=45.73 E-value=18 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
..++.|.++++.|+-++..|++++
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444443
No 196
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=45.63 E-value=13 Score=28.31 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhcChHHHHHHHHHHH
Q psy16078 11 KNKEAFRRYLEQSGVVDAITSALVML 36 (111)
Q Consensus 11 sKrEeFRkYLE~~GVlDaLTkvLV~L 36 (111)
.=+..|.+||+.-||=+.|+..|...
T Consensus 181 ~Lq~~l~~yLeeRGI~~~la~fl~~y 206 (227)
T 3qv0_A 181 ELQESLEAYLESRGVNEELASFISAY 206 (227)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34678999999999999999988765
No 197
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=45.62 E-value=46 Score=21.87 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
.+.+.|.+|+.+|+-++.+|..+--+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQ 44 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQ 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888777655433
No 198
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=45.48 E-value=39 Score=22.21 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.++..|+.+=+.|.+++..|.++...+...|..+
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455555555555555555555555555554433
No 199
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=45.44 E-value=39 Score=18.85 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~ 82 (111)
++.|..++.+|..++++|+
T Consensus 10 VEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 10 LEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 3444444444444444443
No 200
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=45.43 E-value=25 Score=27.85 Aligned_cols=29 Identities=10% Similarity=0.355 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.|.++..+...+|++|+.+|.+|..+|+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 433 SLDAEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666654
No 201
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=45.24 E-value=42 Score=23.64 Aligned_cols=70 Identities=10% Similarity=0.122 Sum_probs=37.1
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 14 EAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRN---LGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 14 EeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~---Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
+++++.-....+..++..++-.|++... ++++-|... |.....-...+..+...+.++...+..+..++.
T Consensus 39 ~e~~rL~nae~l~~~~~~a~~~L~~~e~---~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~ 111 (175)
T 4abx_A 39 TELSRLSNLHTIAQAAAGGVELLSDGDL---NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELR 111 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556688889999999987542 455544443 322111123344444444444444444444433
No 202
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=45.24 E-value=70 Score=27.21 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=40.6
Q ss_pred HHHHhcChHHHHHHHH------HHHhcCCCCCCCHHHHHHHhhCCCC-------------CCHHHHHHHHHHHHHHHHHH
Q psy16078 18 RYLEQSGVVDAITSAL------VMLYSIEEKPEDPLDFIRRNLGDER-------------PEVAEYEAVLQDLDEAKAEL 78 (111)
Q Consensus 18 kYLE~~GVlDaLTkvL------V~LYEe~ekP~dalefir~~Lg~~~-------------p~~~e~e~Lk~E~~~lk~~i 78 (111)
+.-++..+++.|-+++ +.+-.....|.++.+-|...|+-.. =+..++++|.+|.+++++++
T Consensus 391 k~~~r~hilegl~~a~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei 470 (514)
T 2inr_A 391 NAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALI 470 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSHHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444554444332 2233344446777777766554210 13467888888888888888
Q ss_pred HHHHHHHH
Q psy16078 79 DQLTATVA 86 (111)
Q Consensus 79 ~~L~~e~~ 86 (111)
+.|+.-+.
T Consensus 471 ~~l~~iL~ 478 (514)
T 2inr_A 471 KQLRHILD 478 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88877644
No 203
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=45.21 E-value=15 Score=24.29 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 72 DEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 72 ~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+.|+.+|..|+.++..|.+++.++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665554
No 204
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.98 E-value=52 Score=20.63 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.+|..|...+..+...++..+.++.+...+|
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 205
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=44.93 E-value=69 Score=21.57 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.+.|....+++.+++.+|+.....|..-+..+.
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (135)
T 1q06_A 81 KRRTLEKVAEIERHIEELQSMRDQLLALANACP 113 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888888888888888887776654
No 206
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.85 E-value=43 Score=22.74 Aligned_cols=29 Identities=31% Similarity=0.327 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..|++.|+.++.+|+.+++.......++.
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~~~e~g 45 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAAVQELG 45 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788889988888888877666555553
No 207
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=44.83 E-value=19 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
|..|+.++..|..++..|+..+.+.+
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56677778888888888887777543
No 208
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=44.33 E-value=27 Score=24.09 Aligned_cols=26 Identities=8% Similarity=0.196 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
++.|...+++++.++..+...+.++.
T Consensus 114 l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 114 IKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 209
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=44.25 E-value=46 Score=23.13 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=38.7
Q ss_pred HHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q psy16078 17 RRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERP-EVAEYEAVLQDLD 72 (111)
Q Consensus 17 RkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p-~~~e~e~Lk~E~~ 72 (111)
-+||.=.|++|.-.+.+..+-. -.+| +-||+.||-... +.+|-+++++||+
T Consensus 105 AnyL~I~~Lldl~c~~vA~~ik----gkt~-eeir~~f~I~nd~t~eEe~~ir~en~ 156 (160)
T 2p1m_A 105 ANYLNIKNLLDLTCQTVADMIK----GKTP-EEIRTTFNIKNDFTPEEEEEVRRENQ 156 (160)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTT----TCCH-HHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHc----CCCH-HHHHHHcCCCCCCCHHHHHHHHHhCc
Confidence 4799999999999999988763 3455 449999998532 5567788888875
No 210
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.22 E-value=47 Score=21.83 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+++.+.+..|-.+..++.+.+.+|.+|...++++
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555444
No 211
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.01 E-value=36 Score=27.09 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+++.|+.+++.++..+.++..++++.+++++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 34444445555555555555555554444443
No 212
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.93 E-value=31 Score=28.92 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++.++|+.+..+++.++..|+++..++.+++...
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999998888653
No 213
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=43.87 E-value=38 Score=25.77 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVES 100 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~ 100 (111)
+-..-.+.++|...++.|..++.+|+.++++++-+.+
T Consensus 39 ~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~s 75 (206)
T 3oa7_A 39 YGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTS 75 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHH
Confidence 3344456778888888888888888888888876543
No 214
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=43.19 E-value=36 Score=17.81 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e 84 (111)
+.|-+|+++|+.++..|.+.
T Consensus 4 delykeledlqerlrklrkk 23 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555544
No 215
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.05 E-value=35 Score=26.07 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..--.||.+|..+|+.|..+|..|+..+..+
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888888887776654
No 216
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=42.99 E-value=96 Score=22.70 Aligned_cols=67 Identities=9% Similarity=0.262 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16078 25 VVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEV------------AEYEAVLQDLDEAKAELDQLTATVANLKE-- 90 (111)
Q Consensus 25 VlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~------------~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~-- 90 (111)
+++.|-.+|-.||+.. ..|++..++.....- .....|+.....|.++...|...+..|+.
T Consensus 13 ~l~~Lq~~i~~l~~~~------~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~ 86 (174)
T 2p22_A 13 MLQNLQTVVNELYRED------VDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR 86 (174)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777788888553 346777777654332 12344666666666666677777777766
Q ss_pred -Hhccccc
Q psy16078 91 -RLSKYEV 97 (111)
Q Consensus 91 -~l~~~e~ 97 (111)
++++++.
T Consensus 87 ~k~~e~~~ 94 (174)
T 2p22_A 87 AKVQQFSS 94 (174)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 5554443
No 217
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=42.92 E-value=38 Score=23.25 Aligned_cols=11 Identities=18% Similarity=0.121 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy16078 67 VLQDLDEAKAE 77 (111)
Q Consensus 67 Lk~E~~~lk~~ 77 (111)
|..++..++.+
T Consensus 25 l~~~l~~l~~~ 35 (284)
T 1c1g_A 25 AEADKKAAEDR 35 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 218
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=42.92 E-value=17 Score=23.81 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+++.|..++.+|+..+..|+++-.=.=++|
T Consensus 2 ei~~L~~ei~eLk~~ve~lEkERDFYF~KL 31 (82)
T 3tq7_B 2 QILELNQQLVDLKLTVDGLEKERDFYFSKL 31 (82)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888644333333
No 219
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=42.83 E-value=49 Score=20.80 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.++..|+..-.....+|.+.++.+.+|.-++
T Consensus 17 ~el~eLq~~~~~~~aki~e~krkl~eLsHRi 47 (65)
T 3t97_B 17 EDISELQKNQTTTMAKIAQYKRKLMDLSHRT 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455555555555566666666666665444
No 220
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=42.39 E-value=27 Score=22.56 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..|+.++..+......|.-++..++
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~ 27 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLA 27 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 221
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=42.22 E-value=59 Score=23.77 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQ 102 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~~ 102 (111)
++.--..+...++.+..|++.+..++.+|.++.|.+-++
T Consensus 64 ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Y 102 (158)
T 3tul_A 64 YEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGY 102 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 444446777888899999999999999999998876443
No 222
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=42.19 E-value=45 Score=20.99 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~ 83 (111)
+|+.+.+.+..+++.|++
T Consensus 13 aLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 13 MLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555555555
No 223
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=42.11 E-value=60 Score=20.13 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+...+...++..+++|..+.+.|.....+-+.+|+
T Consensus 75 ~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 75 LSDEEEFEIQEQMTLLNARWEALRVESMERQSRLH 109 (118)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888999999999999999888877776664
No 224
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=42.10 E-value=61 Score=27.31 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=47.5
Q ss_pred HHHHhcChHHHHHHHHH------HHhcCCCCCCCHHHHHHHhhCCCC-------------CCHHHHHHHHHHHHHHHHHH
Q psy16078 18 RYLEQSGVVDAITSALV------MLYSIEEKPEDPLDFIRRNLGDER-------------PEVAEYEAVLQDLDEAKAEL 78 (111)
Q Consensus 18 kYLE~~GVlDaLTkvLV------~LYEe~ekP~dalefir~~Lg~~~-------------p~~~e~e~Lk~E~~~lk~~i 78 (111)
+.-++..+++.|-+++- .+......+.+|..-|...|+-.. =+.-+.++|..|.++|++++
T Consensus 353 k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i 432 (470)
T 3ilw_A 353 KANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEI 432 (470)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 66677777777766543 334456667888888888777631 13466788888888888888
Q ss_pred HHHHHHHHH
Q psy16078 79 DQLTATVAN 87 (111)
Q Consensus 79 ~~L~~e~~e 87 (111)
+.|+.-+..
T Consensus 433 ~~l~~iL~~ 441 (470)
T 3ilw_A 433 ADLEDILAK 441 (470)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhCC
Confidence 887766443
No 225
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=41.91 E-value=37 Score=22.98 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..++....++..|+.++..|+.++...+
T Consensus 89 ~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 89 KKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467778888888999999998887643
No 226
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=41.81 E-value=62 Score=22.34 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+=+..-+.+..++++|..++..|+.++.
T Consensus 79 ~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 79 QAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443
No 227
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.80 E-value=9.1 Score=25.02 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
.-+.++..+|.+|+.++..|+..+++-+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666544
No 228
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=41.79 E-value=30 Score=23.83 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=18.7
Q ss_pred CCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy16078 43 PEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQL 81 (111)
Q Consensus 43 P~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L 81 (111)
|++..+-|.+.+ .++..|+++++.|+.++...
T Consensus 27 ~~~l~~~v~~l~-------~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 27 PAKLPKTVERFF-------EEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TTSHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 445555555543 44566666666666665554
No 229
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=41.77 E-value=51 Score=22.58 Aligned_cols=28 Identities=25% Similarity=0.094 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
...|..|..+++.|+.++..|.++++--
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777777777777777777776543
No 230
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=41.73 E-value=78 Score=21.33 Aligned_cols=43 Identities=7% Similarity=0.083 Sum_probs=30.0
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.++++++.+.+-...++...-+.|+....+...+.+.|+..+.
T Consensus 42 ~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~ 84 (117)
T 2cpt_A 42 QHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLK 84 (117)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688888888755334455567788888888777777776543
No 231
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=41.50 E-value=51 Score=22.28 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
..+..|++.+..+......|.-++..++..+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555555555555555444
No 232
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=41.48 E-value=44 Score=23.28 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy16078 75 KAELDQLTATVANLKERLS 93 (111)
Q Consensus 75 k~~i~~L~~e~~eL~~~l~ 93 (111)
..++..|...+..|+.++.
T Consensus 56 ~~~~~~Le~~n~~L~~~lk 74 (155)
T 2oto_A 56 EKAKQALEDQRKDLETKLK 74 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 233
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=41.33 E-value=24 Score=26.80 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQ 80 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~ 80 (111)
++.|+.+|.+|+.++..
T Consensus 74 ~~~LR~r~~~Le~~L~~ 90 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQ 90 (252)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 234
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=41.22 E-value=53 Score=19.24 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+-++.|..-++-|+.+.++|-.+....+.+|.
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888999999888888877666554
No 235
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=41.12 E-value=53 Score=23.83 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.+++..|..++.-+..+...|++++..|-.++-+.-
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777766664443
No 236
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=40.52 E-value=52 Score=23.29 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
+..|.+.+..+...+..+..++.++..++...+..
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETA 36 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45778888888888888888888888888777764
No 237
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=40.47 E-value=66 Score=20.71 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
+-|+.|..-++-|+.+.++|..+....
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ss 33 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESM 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666655554443
No 238
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=40.46 E-value=47 Score=18.42 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
+|-..|..+-+.++.+.+.|.+.++.
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666665554
No 239
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=40.32 E-value=25 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHh-cChHHHHHHHHHH
Q psy16078 10 EKNKEAFRRYLEQ-SGVVDAITSALVM 35 (111)
Q Consensus 10 dsKrEeFRkYLE~-~GVlDaLTkvLV~ 35 (111)
.++|-+|...|.+ .| ||.|.+-|-.
T Consensus 175 ~tyRsqF~~~i~~~~G-id~LI~~L~~ 200 (211)
T 2qgu_A 175 ETYKNQFADVISKRGG-VGGLVQFLDE 200 (211)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 4789999999999 99 9999887754
No 240
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=40.14 E-value=18 Score=25.04 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 71 LDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.++|..++..|+-+|..|+.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999974
No 241
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=40.08 E-value=13 Score=24.35 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16078 68 LQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~eL~ 89 (111)
+.|.+-||.+|.+|..++..|.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE 35 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLE 35 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666554
No 242
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.73 E-value=61 Score=20.64 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
+.++..+|.+|..++..|+..+++-+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45555556666666666555555443
No 243
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.66 E-value=40 Score=21.55 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+...++++..++..|+.++..|+.+|+.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666543
No 244
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=39.65 E-value=38 Score=27.15 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHHHh----cC------hHHHHHHHHHHHhcCCCCCCCHHHHHHHhh------CCCCCCHHHHHHHHHHHH
Q psy16078 9 NEKNKEAFRRYLEQ----SG------VVDAITSALVMLYSIEEKPEDPLDFIRRNL------GDERPEVAEYEAVLQDLD 72 (111)
Q Consensus 9 ~dsKrEeFRkYLE~----~G------VlDaLTkvLV~LYEe~ekP~dalefir~~L------g~~~p~~~e~e~Lk~E~~ 72 (111)
.+...+-++.++.+ .| +++++.+.--........|..+++.+...- +...| .++..|+..++
T Consensus 327 ~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p--~~i~~l~~~i~ 404 (468)
T 3pxg_A 327 VDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTP--PNLKELEQKLD 404 (468)
T ss_dssp HHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCC--SSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHH
Confidence 44455556655554 33 344444433333334455777887764331 22123 34555555555
Q ss_pred HHHH------------HHHHHHHHHHHHHHHhcccc
Q psy16078 73 EAKA------------ELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 73 ~lk~------------~i~~L~~e~~eL~~~l~~~e 96 (111)
.+.. +..+|..+..+|+.+++..+
T Consensus 405 ~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~ 440 (468)
T 3pxg_A 405 EVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTK 440 (468)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5552 34456666666666665443
No 245
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=39.51 E-value=27 Score=24.74 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=38.7
Q ss_pred HHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCC-CCHHHHHHHHHHHH
Q psy16078 17 RRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDER-PEVAEYEAVLQDLD 72 (111)
Q Consensus 17 RkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~-p~~~e~e~Lk~E~~ 72 (111)
-+||+=.|++|...+.+..+... | +| +-||+.||... -+.+|-+++++||+
T Consensus 113 AnyLdIk~Lldl~c~~vA~~ikg--k--tp-eeiR~~f~I~nd~t~eEe~~ir~en~ 164 (169)
T 3v7d_A 113 ANYLNIKPLLDAGCKVVAEMIRG--R--SP-EEIRRTFNIVNDFTPEEEAAIRRENE 164 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTT--C--CH-HHHHHHHTCCCCCCHHHHHHHHTTC-
T ss_pred HHHhCcHHHHHHHHHHHHHHHcC--C--CH-HHHHHHcCCCCCCCHHHHHHHHHhcc
Confidence 37999999999999999888743 2 34 88999999853 25677777777764
No 246
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.33 E-value=25 Score=23.87 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..++...+.|+.+++..|..|+.++..++++-..++
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555566666666666666666666655544443
No 247
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=39.22 E-value=56 Score=20.83 Aligned_cols=43 Identities=5% Similarity=0.153 Sum_probs=29.5
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
.++++++...+... |+...-+.|+....+...+.+.|+.-+..
T Consensus 40 ~~Aie~ll~alk~e-~d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 40 QEGIDLLLQVLKGT-KDNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778877777542 55666677777777777777777766553
No 248
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.93 E-value=30 Score=23.60 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
.++..|+..++.|..+++.|+..+..|...|
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444444444433333333
No 249
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=38.75 E-value=24 Score=23.33 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q psy16078 74 AKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 74 lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
|++++..|+.++..|+.+|.++
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l 23 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELT 23 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 250
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=38.70 E-value=49 Score=20.94 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAEL 78 (111)
Q Consensus 66 ~Lk~E~~~lk~~i 78 (111)
.|..++.+++..+
T Consensus 16 ~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 16 EKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 251
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=38.57 E-value=96 Score=21.43 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=25.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEY-EAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~-e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
..++ .-|....+++.+++++|+.....|...+..
T Consensus 88 ~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~~~~ 122 (154)
T 2zhg_A 88 AKEWKQLSSQWREELDRRIHTLVALRDELDGCIGC 122 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3443 344566888999999999888888887754
No 252
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=38.31 E-value=59 Score=22.35 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.|+.+|+.+++.+..++.+|++--.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~ 28 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQ 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888876544
No 253
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=38.29 E-value=52 Score=18.31 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQL 81 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L 81 (111)
++.|-.++.+|..++++|
T Consensus 10 vEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 10 LEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHH
Confidence 344444444444444433
No 254
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.86 E-value=66 Score=20.81 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+.+...++++..++..|+.++..|+.+|+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444445555555555555555555543
No 255
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=37.81 E-value=54 Score=25.41 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCh-HHHHHHHHHHHhcCCCCCCCHHHHHHHhh
Q psy16078 12 NKEAFRRYLEQSGV-VDAITSALVMLYSIEEKPEDPLDFIRRNL 54 (111)
Q Consensus 12 KrEeFRkYLE~~GV-lDaLTkvLV~LYEe~ekP~dalefir~~L 54 (111)
=.+-|++||++.++ -+-+.+.|-.|.+ -++..+|+.+++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~ 380 (386)
T 3av0_A 341 IKELLVDYANRQGIDGDLVLSLYKALLN----NENWKELLDEYY 380 (386)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHT----TCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHc----CchHHHHHHHHH
Confidence 36999999999886 5666666666665 455888887775
No 256
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=37.80 E-value=38 Score=23.30 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 69 QDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+|+++|+.+++.+++++.-|+.-.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF 27 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVF 27 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777776544
No 257
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=37.47 E-value=70 Score=20.76 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.--.||..|..+|..+..+|..|+..-..
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~ 59 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLRKENKD 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777766665433
No 258
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=37.33 E-value=30 Score=23.11 Aligned_cols=28 Identities=7% Similarity=0.270 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 71 LDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..+|+.++..|++++..++.++..+...
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3578888889999999999988877654
No 259
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.31 E-value=62 Score=21.94 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+|....-...++++.|+.++.+|+.+|
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333333444444444444333
No 260
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=37.03 E-value=29 Score=27.19 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCC
Q psy16078 13 KEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERP 59 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p 59 (111)
.++||+.+.+ ++|.+...+-.+-+.|..|.-..+|++..|...-|
T Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 47 (486)
T 1js3_A 3 ASDFRRRGKE--MVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAP 47 (486)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCC
T ss_pred HHHHHHHHHH--HHHHHHHHHhhcccCCCCCCCCHHHHHHhccccCC
Confidence 4689999988 89999999888876665555444666666655433
No 261
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=36.94 E-value=60 Score=23.89 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEAK----AELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk----~~i~~L~~e~~eL~~~l~~ 94 (111)
..++.|+.++++++ .++-++..+.++++.+.++
T Consensus 42 ~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~k 78 (197)
T 1dkg_A 42 EKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTEL 78 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888876 4888888888888877654
No 262
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=36.72 E-value=68 Score=19.20 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=21.0
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 49 FIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 49 fir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~ 82 (111)
||++.=-. ---+||+.|..-+.+|+.++..++
T Consensus 17 ~I~qAk~~--~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 17 FIRQAKAA--GRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHHHHHHHh
Confidence 45544444 236778888888888777777665
No 263
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.56 E-value=32 Score=29.76 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
+.-|+.+++.-.+.|..|+.-|+++..+|+++|.+
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555666666666666666653
No 264
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.29 E-value=60 Score=21.62 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
-|...++.+...++.|.+.+..++.+
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~ 117 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 265
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=36.17 E-value=54 Score=17.85 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
+++.+|..=.++|+.++.+|+..
T Consensus 6 e~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666655543
No 266
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.04 E-value=56 Score=24.26 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
++-+...+.+|+.+|..|+++++-|+....+
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788899999999999999988876543
No 267
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=35.82 E-value=1.4e+02 Score=22.43 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=31.7
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 48 DFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 48 efir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
+-.+.-+....-...+++..+.++..++.+++.++.++..++.++...+
T Consensus 101 ~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 101 QRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAE 149 (369)
T ss_dssp HHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344434333345677888888888888877777777777776665443
No 268
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.33 E-value=41 Score=21.91 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDE 73 (111)
Q Consensus 63 e~e~Lk~E~~~ 73 (111)
++++|..||.+
T Consensus 10 evEnLi~EN~e 20 (77)
T 2w83_C 10 EVENLILENTQ 20 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 269
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=35.19 E-value=27 Score=29.40 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++.+.|+.+..+++.++..|+.+..++..++...
T Consensus 71 ~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 71 EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888899999999998888888887544
No 270
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=34.93 E-value=74 Score=21.94 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.+|+.|+..+..+..-+..-..++++|+..
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~e 53 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEE 53 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544444444443333333333333
No 271
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=34.92 E-value=69 Score=23.82 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
++..|+..+..|+.+|..|+..|++|..+
T Consensus 96 el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 96 DLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444444444444444444433
No 272
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.62 E-value=30 Score=28.46 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcChHH--HHHHHHHHHhcCCCCCCCHHHH-------HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 13 KEAFRRYLEQSGVVD--AITSALVMLYSIEEKPEDPLDF-------IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTA 83 (111)
Q Consensus 13 rEeFRkYLE~~GVlD--aLTkvLV~LYEe~ekP~dalef-------ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~ 83 (111)
.+.+++=|.+-|..+ .+..-++.|+++--.=...++- +.+.+|......++.++|+.+..+++.++..|++
T Consensus 11 ~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 90 (455)
T 2dq0_A 11 PELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELEN 90 (455)
T ss_dssp HHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777612 2234455555432211111111 1122221001124567888999999999999999
Q ss_pred HHHHHHHHhccc
Q psy16078 84 TVANLKERLSKY 95 (111)
Q Consensus 84 e~~eL~~~l~~~ 95 (111)
+..++..++...
T Consensus 91 ~~~~~~~~~~~~ 102 (455)
T 2dq0_A 91 EVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888888654
No 273
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=34.55 E-value=85 Score=23.58 Aligned_cols=42 Identities=19% Similarity=0.459 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQ 102 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~~~~~ 102 (111)
.+.+++--..+..+++++..|++.+..++.+|.++.|.+-++
T Consensus 109 tD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~dP~Y 150 (201)
T 3u0c_A 109 TRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEK 150 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCTTH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 455666666778888999999999999999999999986543
No 274
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=33.97 E-value=13 Score=28.43 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+.+..+++.++.++.+++++++.|+.++.
T Consensus 150 ~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 150 YKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444443
No 275
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.60 E-value=24 Score=24.10 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
++...+.|+.+++..|..|+.++..++++
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444433
No 276
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.50 E-value=68 Score=26.34 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=34.2
Q ss_pred cChHHHHHHHHHHHhcCCCCC--CCH---HHHHHHhhCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 23 SGVVDAITSALVMLYSIEEKP--EDP---LDFIRRNLGDER-------PEVAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 23 ~GVlDaLTkvLV~LYEe~ekP--~da---lefir~~Lg~~~-------p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+..+..|.+.+...|-..++| ++. ..++++.+-... .....+..|+..+..++.+|..|+..+.+|..
T Consensus 54 ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 54 TGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344556666777777664443 332 455555443210 00133444555555555555555555555544
Q ss_pred Hh
Q psy16078 91 RL 92 (111)
Q Consensus 91 ~l 92 (111)
++
T Consensus 134 ~~ 135 (409)
T 1m1j_C 134 HC 135 (409)
T ss_dssp TS
T ss_pred Hh
Confidence 43
No 277
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=33.39 E-value=9.9 Score=22.43 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+++.|++++....+.++.++..|++++..-
T Consensus 3 KlQrELeEa~Erae~ae~~vnkLR~k~R~~ 32 (45)
T 3zwh_Q 3 KLQRELEDATETADAMNREVSSLKNKLRRG 32 (45)
T ss_dssp SSSSHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 356788999999999999999999988654
No 278
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=33.37 E-value=58 Score=17.38 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.+++.|+.+.+++++.|-..++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le 23 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888877765554
No 279
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.34 E-value=1.3e+02 Score=21.31 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCC-CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 46 PLDFIRRNLGDER-PEV---AEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 46 alefir~~Lg~~~-p~~---~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
-++||-+.|=+.. .+. ..+..|..|+.++.++.....++-+.+-.+++..-.
T Consensus 72 qIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 72 QINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788886643 222 336777778777777776666666666666655443
No 280
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=33.20 E-value=90 Score=22.15 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=30.7
Q ss_pred HHHHHHHhhCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 46 PLDFIRRNLGDERPE-VAEYEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 46 alefir~~Lg~~~p~-~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+-+++.+.+|....+ +.+++.+......+...+..|.+.+..+...+
T Consensus 20 ~~q~~~~k~G~~e~t~D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~ 67 (244)
T 1uru_A 20 AKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCV 67 (244)
T ss_dssp ------CCSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888887555 77888888888888888888777776655433
No 281
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.19 E-value=1.2e+02 Score=20.87 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=29.3
Q ss_pred HHHHHHhhCCCC-CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 47 LDFIRRNLGDER-PEV---AEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 47 lefir~~Lg~~~-p~~---~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
++||-+.|=+.. .+. ..+..|..|+..+.++.....++-+.+-.+++.
T Consensus 73 Ie~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 73 INKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776643 222 336677777777766666666666655555543
No 282
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.96 E-value=77 Score=20.26 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhccc
Q psy16078 77 ELDQLTATVANLKERLSKY 95 (111)
Q Consensus 77 ~i~~L~~e~~eL~~~l~~~ 95 (111)
.|++|++++.+..+.++.+
T Consensus 41 ~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 41 LIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555444444433
No 283
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=32.91 E-value=37 Score=26.96 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=33.2
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCC
Q psy16078 14 EAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERP 59 (111)
Q Consensus 14 EeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p 59 (111)
++||+.+.+ ++|.+.+.+-.+-+.|..|.-..+|++..|...-|
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p 47 (475)
T 3k40_A 4 PEFKDFAKT--MVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAP 47 (475)
T ss_dssp HHHHHHHHH--HHHHHHHHHHTGGGSCSSCSSCTTCSGGGSCSSCC
T ss_pred HHHHHHHHH--HHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCC
Confidence 789999876 68999999888877666655445777777766555
No 284
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.76 E-value=93 Score=21.18 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
..++++.++..+..|+.++..|+.+|
T Consensus 56 K~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 56 KNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 285
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=32.75 E-value=35 Score=27.18 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
...|..|+..++.++.+|..|+..+.++...+..
T Consensus 29 ~~~I~~Lq~~le~l~~KIq~Le~~v~~~~~~~~~ 62 (328)
T 1fzc_B 29 PTNLRVLRSILENLRSKIQKLESDVSAQMEYCRT 62 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3457778888999999999999988887766543
No 286
>2yf4_A MAZG-like nucleoside triphosphate pyrophosphohydr; hydrolase, dimeric dutpase; HET: GOL; 1.70A {Deinococcus radiodurans} PDB: 2yf3_A* 2yeu_A* 2yf9_A 2yfc_A* 2yfd_A*
Probab=32.52 E-value=37 Score=24.46 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHH-------------------hcChHHHHHHHHHHHh
Q psy16078 10 EKNKEAFRRYLE-------------------QSGVVDAITSALVMLY 37 (111)
Q Consensus 10 dsKrEeFRkYLE-------------------~~GVlDaLTkvLV~LY 37 (111)
.-..||+..|++ -.+++|+|+.+++-+|
T Consensus 48 ~li~EEl~E~~e~~~~~~~~~~~~~A~~~~dlve~aDAL~DllYv~~ 94 (154)
T 2yf4_A 48 TLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTY 94 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccccHHHHHHHHhChhhHHH
Confidence 346789999988 2489999999999888
No 287
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=32.25 E-value=89 Score=19.20 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
+..++...++..++.|..+.+.|.....+-+.+|+
T Consensus 75 ~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le 109 (119)
T 3uun_A 75 LSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLH 109 (119)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999998888888877666664
No 288
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=32.01 E-value=62 Score=20.98 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLD 72 (111)
Q Consensus 62 ~e~e~Lk~E~~ 72 (111)
.|++.|++--+
T Consensus 25 aEl~sLrrT~~ 35 (78)
T 3iv1_A 25 AELNALKRTEE 35 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 289
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=31.90 E-value=90 Score=19.13 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
+=+|+.++.+|++++..|++-+++
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665554
No 290
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.79 E-value=82 Score=21.63 Aligned_cols=8 Identities=25% Similarity=0.356 Sum_probs=3.3
Q ss_pred HHHHHHhc
Q psy16078 86 ANLKERLS 93 (111)
Q Consensus 86 ~eL~~~l~ 93 (111)
..|+..+.
T Consensus 71 e~Lr~e~~ 78 (120)
T 3i00_A 71 EFLRAELD 78 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 291
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=31.40 E-value=1.1e+02 Score=20.79 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q psy16078 75 KAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 75 k~~i~~L~~e~~eL~~~l~~~ 95 (111)
+.++.+|+.+|..|+.+|+..
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888877644
No 292
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=31.39 E-value=2 Score=29.66 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy16078 59 PEVAEYEAVLQDLDEAKAE 77 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~ 77 (111)
=+.+++..|++.--.++.+
T Consensus 28 Ls~~e~~~lK~~RR~lKNR 46 (107)
T 3a5t_A 28 LSKEEIIQLKQRRRTLKNR 46 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhhH
Confidence 3356666666555555443
No 293
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=31.27 E-value=1e+02 Score=19.46 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..+++.|..--.++.....++...+.+|+..+..+.
T Consensus 10 ~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 10 SFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLV 45 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777777777777777777776654
No 294
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.01 E-value=65 Score=29.40 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 70 DLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
|+..++.++..|++++++|+.++
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~ 1000 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKEL 1000 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444
No 295
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=30.98 E-value=93 Score=19.93 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=16.0
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQL 81 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L 81 (111)
||+++++ +||..+-.+++.|+..-.-+
T Consensus 14 IrKnma~-----sEI~EID~Ki~nL~~mR~iv 40 (72)
T 2xu6_A 14 IQKNSTM-----SEIRDIEVEVENLRQKKEKL 40 (72)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhH-----HHHHHHHHHHHHHHHHHHHH
Confidence 7788877 56655555555555544333
No 296
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.86 E-value=77 Score=22.88 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
++.|+..+.+....++.|+.++.+|+..+...+.+
T Consensus 117 ~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44555555555556666666666666666655443
No 297
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=30.81 E-value=1.8e+02 Score=25.20 Aligned_cols=50 Identities=30% Similarity=0.478 Sum_probs=34.0
Q ss_pred CCHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 44 EDPLDFIRRNLGDERPE---------------VAEYEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~---------------~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+.++|-+..|....|- ..+++.|++-+++.+.+|..++.-+..+++++-
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvS 380 (602)
T 1cii_A 316 HSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLS 380 (602)
T ss_dssp SCHHHHHHHTSCCCCSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhcCCCCcchhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888877663 135666666677777777777777776666553
No 298
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=30.67 E-value=1.1e+02 Score=19.59 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..++.++..++..++..++.......+|..+..++
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l 47 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTL 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776666555555555554443
No 299
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=30.66 E-value=31 Score=21.80 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 71 LDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 71 ~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
+.+.-++.++|+..+-.++..|.-|.+.
T Consensus 5 lr~iLqERNELKa~vf~lqeEL~yY~~e 32 (65)
T 1yhn_B 5 FEQILQERNELKAKVFLLKEELAYFQRE 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444455555555555555555553
No 300
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=30.55 E-value=27 Score=18.32 Aligned_cols=13 Identities=46% Similarity=0.815 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCh
Q psy16078 13 KEAFRRYLEQSGV 25 (111)
Q Consensus 13 rEeFRkYLE~~GV 25 (111)
...||+||.+..+
T Consensus 13 QrA~R~yl~~~~~ 25 (27)
T 2kxw_B 13 QRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhhh
Confidence 3579999987653
No 301
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.35 E-value=20 Score=30.98 Aligned_cols=30 Identities=7% Similarity=0.250 Sum_probs=13.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q psy16078 63 EYEAVLQDLD-EAKAELDQLTATVANLKERL 92 (111)
Q Consensus 63 e~e~Lk~E~~-~lk~~i~~L~~e~~eL~~~l 92 (111)
+.++...++. +|+.+|..|+.+++.--.+|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnI 133 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHI 133 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 55555555555444433333
No 302
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=30.26 E-value=55 Score=22.29 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+..+++.++.|..++..|+.++..++.
T Consensus 26 ~~~~~~~l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 26 VASLRQQVEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555566666666666666665554
No 303
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=30.20 E-value=43 Score=25.61 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCC----CCC--HHHHHHHHHHHHHHH
Q psy16078 9 NEKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDE----RPE--VAEYEAVLQDLDEAK 75 (111)
Q Consensus 9 ~dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~----~p~--~~e~e~Lk~E~~~lk 75 (111)
...=|.-||.++..-|=+.++=..|+.-|...++ ..+++||.+-|+++ .|. ..++..|..++..|+
T Consensus 164 ~~~LR~lYr~~v~~~~s~~~~~~~~~~~yg~~~~-~~vl~fL~~AL~~DL~S~~pSi~~~~L~~lls~L~~Lr 235 (246)
T 1xkp_A 164 LQPLRDTYRDAVMGYQGIYAIWSDLQXRFPNGDI-DSVILFLQXALSADLQSQQSGSGREXLGIVISDLQXLX 235 (246)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHCTTSCH-HHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 3444888999999999999999999999977777 89999999999876 343 344555555555444
No 304
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=30.09 E-value=43 Score=26.28 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 46 PLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
.++.|-+.+|-..| ++.|.++-++.+.+++++.++..++..
T Consensus 217 lL~~l~~l~gl~id----~~~L~e~A~~~e~~i~~l~~~~~e~~~ 257 (319)
T 2p90_A 217 LLQSIADSADLNLP----LLALERDAEKVHRQLMEQTEESSEIQR 257 (319)
T ss_dssp HHHHHHHHHTCCCC----CHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45778888887544 455666666666666666655555444
No 305
>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, virulence, TR type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A
Probab=29.84 E-value=68 Score=25.26 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCC----CC--CHHHHHHHHHHHHHHHH
Q psy16078 10 EKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDE----RP--EVAEYEAVLQDLDEAKA 76 (111)
Q Consensus 10 dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~----~p--~~~e~e~Lk~E~~~lk~ 76 (111)
..=|.-||.++..-|=...+=.-++.=|...++ ..+++||.+-|+++ .| +..++..|-.++..||.
T Consensus 118 ~~LR~~YR~fv~~~~~~~~ly~~w~~~yg~~~r-~~v~~Fl~~aL~aDL~s~~psi~~~efg~l~s~l~~Lr~ 189 (294)
T 2vj4_A 118 QLLRACYRGFIMGNISTTDQYIEWLGNFGFNHR-HTIVNFVEQSLIVDMDSEXPSCNAYEFGFVLSXLIAIXM 189 (294)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHCSTTH-HHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhCcchH-HHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHHHHHHHH
Confidence 344888999999999999999999999977777 89999999998765 23 35777778777777764
No 306
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=29.54 E-value=1.6e+02 Score=21.21 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
-...+++..+.++..++.+++.++.++..++.++..+
T Consensus 95 ~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~ 131 (277)
T 2f1m_A 95 ISKQEYDQALADAQQANAAVTAAKAAVETARINLAYT 131 (277)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4678999999999999999999999999988888654
No 307
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=29.50 E-value=1e+02 Score=19.05 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=29.2
Q ss_pred CCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 44 EDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 44 ~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.++++++.+.+-.. |+...-+.|+....+...+.+.|+..+.
T Consensus 37 ~~aie~l~~a~k~e-~~~~~k~~l~~k~~eYl~RAE~Lk~~l~ 78 (85)
T 2v6x_A 37 YNGLDYLMLALKYE-KNPKSKDLIRAKFTEYLNRAEQLKKHLE 78 (85)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777777666432 5566667788888888888887777654
No 308
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=29.05 E-value=75 Score=26.88 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=0.0
Q ss_pred hHHHHH--HHHHhcChHHHHHHHH------HHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHH---------HHHHH
Q psy16078 12 NKEAFR--RYLEQSGVVDAITSAL------VMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQ---------DLDEA 74 (111)
Q Consensus 12 KrEeFR--kYLE~~GVlDaLTkvL------V~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~---------E~~~l 74 (111)
||-+|+ +.-++..+++.|-+++ +.+-.....|.++.+-|...|+ .+..+.+++-. +...+
T Consensus 359 rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~~~a~~~L~~~f~---lse~qa~~IL~m~L~rLt~~e~~kl 435 (496)
T 2nov_A 359 ARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYD---FTEEQAEAIVTLQLYRLTNTDVVVL 435 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSHHHHHSSCCC-CC---CCHHHHHHHHTCBGGGGSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHHHhcC---CCHHHHHHHHhChHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy16078 75 KAELDQLTATVANLKERLS 93 (111)
Q Consensus 75 k~~i~~L~~e~~eL~~~l~ 93 (111)
++++.+|++++++|+.-|.
T Consensus 436 ~~E~~~l~~~i~~l~~iL~ 454 (496)
T 2nov_A 436 QEEEAELREKIAMLAAIIG 454 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC
No 309
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.79 E-value=33 Score=23.17 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16078 64 YEAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~ 82 (111)
+..|..++.....++..|.
T Consensus 14 l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 3333333333333333333
No 310
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.74 E-value=60 Score=26.91 Aligned_cols=41 Identities=12% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
+.||+...-...| .+..|+.-+++++.+|.+|+..| ++|.+
T Consensus 122 i~~lk~~V~~q~~---~ir~Lq~~l~~q~~kiqRLE~~I-d~c~~ 162 (390)
T 1deq_A 122 IEILRRKVIEQVQ---RINLLQKNVRDQLVDMKRLEVDI-DIKIR 162 (390)
T ss_pred HHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHH-HHHhc
No 311
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.67 E-value=53 Score=27.53 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=23.1
Q ss_pred HHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAV----LQD-LDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~L----k~E-~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.++.+.| +++ ..+++.++..|+.+..++..++...
T Consensus 98 ~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 98 GEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777 788 8888999999998888888887543
No 312
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.52 E-value=83 Score=19.91 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
-+++.|-.+++.|..++..|..++
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655555554
No 313
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.51 E-value=17 Score=29.62 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 50 IRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 50 ir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+.+.+|......++.+.|+.+..+++.++..|+++..++.+++...
T Consensus 56 ~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 56 LSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 314
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=28.49 E-value=8.6 Score=24.76 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+|+..+++|+=++..|++.+..|+.+|+
T Consensus 51 qalkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 51 QALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp TTTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 46888889999999999998888888774
No 315
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=28.33 E-value=91 Score=19.75 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQL 81 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L 81 (111)
-+||+.|..-+.+|+.++.++
T Consensus 45 ~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 45 MDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 316
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.13 E-value=1.1e+02 Score=20.67 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
.....+++|..+-..|..++.+|+.+|..+
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444433
No 317
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=28.08 E-value=1.1e+02 Score=19.09 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++.+..++.+|+.+.......|.+.+.++..+
T Consensus 12 Ld~i~~el~eLq~~~~~~~aki~e~krkl~eL 43 (65)
T 3t97_B 12 LDIISEDISELQKNQTTTMAKIAQYKRKLMDL 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788889999999999999999888887654
No 318
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=27.99 E-value=1.1e+02 Score=21.56 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhh------------CCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 42 KPEDPLDFIRRNL------------GDERPE--VAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 42 kP~dalefir~~L------------g~~~p~--~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
|-++.|+||...| |..+|- -.++.+++.+...|..+...+-.+-++
T Consensus 16 KA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~q~~~iaaeQke 75 (123)
T 4aj5_K 16 KAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKPVAVEQKE 75 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888766 222231 244555555555555555444444333
No 319
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=27.98 E-value=1.2e+02 Score=21.08 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=34.2
Q ss_pred CHHHHHHHhhCCCCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 45 DPLDFIRRNLGDERPEVAEY-------EAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 45 dalefir~~Lg~~~p~~~e~-------e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
+|.+-+.+.+.+ -+.++| ++.+..+.+...+.+.+..-..+|...++.|-.
T Consensus 30 ~A~EdL~D~~~v--~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~ 87 (129)
T 1wlx_A 30 SAMEDLQDMFIV--HTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHI 87 (129)
T ss_dssp HHHHHHHSCCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHhccchhh--ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 456667777777 678888 555566666666666666666666776666663
No 320
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=27.21 E-value=1.3e+02 Score=19.56 Aligned_cols=8 Identities=38% Similarity=0.850 Sum_probs=4.3
Q ss_pred HHHHHHHh
Q psy16078 46 PLDFIRRN 53 (111)
Q Consensus 46 alefir~~ 53 (111)
++|||+.-
T Consensus 37 svdYI~~L 44 (83)
T 4ath_A 37 SVDYIRKL 44 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666544
No 321
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=27.12 E-value=58 Score=25.74 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCC
Q psy16078 13 KEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERP 59 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p 59 (111)
-++||+++.+ ++|.+.+.+-.+-+.|..|.-.-+|++..|...-|
T Consensus 8 ~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p 52 (481)
T 4e1o_A 8 PEEYRERGRE--MVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAP 52 (481)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHSGGGSCSSCCCCTTTTGGGSCSSCC
T ss_pred HHHHHHHHHH--HHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCC
Confidence 3789999876 68999999888866666655555777777776544
No 322
>3o59_X DNA polymerase II large subunit; alpha helical structure, transferase; HET: DNA; 2.20A {Pyrococcus horikoshii}
Probab=27.02 E-value=30 Score=27.71 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=24.7
Q ss_pred HHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHH
Q psy16078 48 DFIRRNLGDE--RPEVAEYEAVLQDLDEAKAELD 79 (111)
Q Consensus 48 efir~~Lg~~--~p~~~e~e~Lk~E~~~lk~~i~ 79 (111)
||+|+.||-+ .|..++++....|+...+.++.
T Consensus 166 DyvR~~lGi~rykp~~~EieRyvEEi~lY~~~v~ 199 (300)
T 3o59_X 166 DYVRRKLGLDRFKPSEKHIERMVEEVDLYHRTVS 199 (300)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 7899999877 4888888888877776665543
No 323
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=26.97 E-value=1e+02 Score=18.27 Aligned_cols=30 Identities=7% Similarity=0.094 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLS 93 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~ 93 (111)
.+.|-..+.+|+.....++++|..|++=|.
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 345555666666666666666666655443
No 324
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=26.20 E-value=41 Score=22.78 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcccc
Q psy16078 66 AVLQDLDEAKA---ELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 66 ~Lk~E~~~lk~---~i~~L~~e~~eL~~~l~~~e 96 (111)
.|+.+++.|+. +...|...+..|..+++.+|
T Consensus 78 ~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 78 KLQREQQRAKDLENRQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 24445555666666665554
No 325
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.06 E-value=87 Score=24.37 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 70 DLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+++.|+.++.+|++++++|.+.....
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66667777777777777776655443
No 326
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.91 E-value=1.4e+02 Score=20.06 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Q psy16078 62 AEYEAVLQDLDEA---KAELDQLTATVANLKERLSK 94 (111)
Q Consensus 62 ~e~e~Lk~E~~~l---k~~i~~L~~e~~eL~~~l~~ 94 (111)
.++++|+++++.+ ..++..|+.++..+...|.+
T Consensus 6 ~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 6 AQIPELKSDLEKASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777766655 66788888888877776643
No 327
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.90 E-value=1.4e+02 Score=20.38 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=3.3
Q ss_pred HHHHHHhcc
Q psy16078 86 ANLKERLSK 94 (111)
Q Consensus 86 ~eL~~~l~~ 94 (111)
..|+..|..
T Consensus 52 ~~l~~~iRe 60 (111)
T 2v66_B 52 EQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 328
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.74 E-value=94 Score=24.73 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 68 LQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
..++..|+..+..++.+|.+|+.+|.+++.
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666655543
No 329
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.64 E-value=1.1e+02 Score=24.17 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 68 LQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 68 k~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+.+.+.++++.++|++++.++..++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3333344444444444444444333
No 330
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=25.31 E-value=1.1e+02 Score=21.06 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
+|.++...|..+|..|+.++..|+.-
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666666655543
No 331
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=25.26 E-value=92 Score=21.02 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 66 AVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 66 ~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
.+..+++.|+.++..|+.++..|+.
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555555544
No 332
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=25.07 E-value=41 Score=24.64 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
..+..++..++.++++|..++++...+.
T Consensus 15 ~q~~q~~~Ql~~~k~Ql~q~k~qy~slt 42 (213)
T 1r8i_A 15 EQLEQMAQQLEQLKSQLETQKNMYESMA 42 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 333
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=25.02 E-value=62 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhccc
Q psy16078 78 LDQLTATVANLKERLSKY 95 (111)
Q Consensus 78 i~~L~~e~~eL~~~l~~~ 95 (111)
...-.++|.+|+.+|..+
T Consensus 104 ~~~s~~ri~~lekeL~~i 121 (160)
T 2cly_B 104 LTQSKTRIQEYEKELEKM 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444455444444
No 334
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.74 E-value=1.2e+02 Score=27.67 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
..++..|+.++.+++.++..++..+.++..++..+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655555555555444433
No 335
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=24.10 E-value=1.9e+02 Score=22.88 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcChHHHHHH-HHHHHhcC--CCCCCCHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q psy16078 13 KEAFRRYLEQSGVVDAITS-ALVMLYSI--EEKPEDPLDFIRRNLGDERP-EVAEYEAVLQDLD 72 (111)
Q Consensus 13 rEeFRkYLE~~GVlDaLTk-vLV~LYEe--~ekP~dalefir~~Lg~~~p-~~~e~e~Lk~E~~ 72 (111)
-++||+++.+ ++|.+.. .+-.+.+. |-.|.-..++++..+...-| .....+.+.+++.
T Consensus 36 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~ 97 (515)
T 2jis_A 36 PVAVEALLRA--VFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCR 97 (515)
T ss_dssp HHHHHHHHHH--HHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHH
Confidence 4689998865 6788877 77666544 44455557889988776655 3333444444443
No 336
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.02 E-value=97 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++.+...+.++-.++..|.+++.+|++++.++
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l 125 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTI 125 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555444
No 337
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=24.00 E-value=1.2e+02 Score=21.60 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
|...++.+...+..-..++.+|+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444555555555555555555555555543
No 338
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=23.93 E-value=1.3e+02 Score=23.54 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
+.+...++.+..-|..|++.+..|
T Consensus 382 ~~~~~~~~~~~~~i~~~~~~~~~~ 405 (463)
T 2xz3_A 382 HVLEQDQQRLITAINQTHYNLLNV 405 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 339
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.52 E-value=1.2e+02 Score=20.65 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
++-|...++.+...++.|.+.+..+++++...
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666555443
No 340
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=23.51 E-value=99 Score=16.84 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANL 88 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL 88 (111)
++.++++|+...+.++...+=++.-+
T Consensus 3 elaaikqelaaikkelaaikfelaai 28 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAI 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655554433
No 341
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.41 E-value=1.5e+02 Score=18.83 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16078 70 DLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 70 E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
++++++..|..|+.++..+++.
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e 50 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRAR 50 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 342
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=23.39 E-value=1.5e+02 Score=18.83 Aligned_cols=25 Identities=8% Similarity=0.255 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.+++.|..|++++..++..+.++..
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~ 28 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLS 28 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776666665444
No 343
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.26 E-value=1.6e+02 Score=21.87 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
-...+++..+.++..++.++..++.++..+++++...+..
T Consensus 111 ~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~ 150 (341)
T 3fpp_A 111 VSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 150 (341)
T ss_dssp STTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999988888766543
No 344
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=23.23 E-value=1.1e+02 Score=21.46 Aligned_cols=46 Identities=7% Similarity=0.090 Sum_probs=20.3
Q ss_pred HHHHHHhhCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 47 LDFIRRNLGDERPEVAE----YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e----~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
++|++..|........- .+.|+..+..||.++.+=-+.+.-|+..+
T Consensus 3 ~e~lr~~l~~~n~~dn~y~qvsedLrrrIe~LkrKV~~Qvq~i~~Lq~nV 52 (119)
T 1lwu_A 3 SDTSGQTLNEHNELEVRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNI 52 (119)
T ss_dssp -----------CTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888775443322 35566666677776666666666666544
No 345
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.12 E-value=1.2e+02 Score=17.75 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.|.+|.+++++|..++..-+.++..++..|.+
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35666666666666666666666666665544
No 346
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.06 E-value=1.8e+02 Score=19.73 Aligned_cols=79 Identities=10% Similarity=0.113 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 10 EKNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLK 89 (111)
Q Consensus 10 dsKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~ 89 (111)
+-.+=.|.+.|-+.|+--.=-+-++.++...+. .++-+...| ....+.|.+++++|+.....|...+..++
T Consensus 59 dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~---~~~~~~~~l------~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 59 ALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDS---TILHRLKLM------KQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCGG---GHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCC---CHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777743334444555543322 222222222 24556677777777777777777777666
Q ss_pred HHhccccc
Q psy16078 90 ERLSKYEV 97 (111)
Q Consensus 90 ~~l~~~e~ 97 (111)
..+.....
T Consensus 130 ~~~~~~~~ 137 (148)
T 3gpv_A 130 DEISSANA 137 (148)
T ss_dssp --------
T ss_pred HHHHcCCC
Confidence 66555433
No 347
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=23.04 E-value=1.7e+02 Score=20.85 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERL 92 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l 92 (111)
+..+..+++.|-+++++|.+++.+|..+.
T Consensus 100 L~~~laqLe~ls~qL~~ls~~v~~L~~q~ 128 (140)
T 3iyn_Q 100 LTALLAQLDSLTRELNVVSQQLLDLRQQV 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555554443
No 348
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=22.98 E-value=1.4e+02 Score=20.88 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 59 PEVAEYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
.+..+|.+-+.+...+..+|..|+.++.
T Consensus 43 sENaeY~aak~~q~~~e~rI~~L~~~L~ 70 (158)
T 2p4v_A 43 SENADYQYNKKRLREIDRRVRYLTKCME 70 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666655555544
No 349
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=22.98 E-value=22 Score=20.57 Aligned_cols=15 Identities=47% Similarity=0.543 Sum_probs=10.8
Q ss_pred ChhhHHHHHHHHHhc
Q psy16078 9 NEKNKEAFRRYLEQS 23 (111)
Q Consensus 9 ~dsKrEeFRkYLE~~ 23 (111)
.=+..++||+||.+-
T Consensus 13 ~F~s~~~l~~YL~~L 27 (40)
T 1k8v_A 13 VLDNKAALRDYLRQI 27 (40)
T ss_dssp SCSSCSHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH
Confidence 344568999999863
No 350
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=22.93 E-value=1.3e+02 Score=19.18 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy16078 61 VAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVV 98 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~~ 98 (111)
..+++.|+.+++++=.++-.|-.+-..+..++..+...
T Consensus 11 ~~~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 11 VPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888877777777777666543
No 351
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=22.91 E-value=1.6e+02 Score=18.94 Aligned_cols=32 Identities=13% Similarity=0.358 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 65 EAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
..+...+..++.++..++..+..+++.++.++
T Consensus 11 k~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 11 KAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 34444444444455555555555555544444
No 352
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=22.87 E-value=53 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccc
Q psy16078 76 AELDQLTATVANLKERLSKYEVVE 99 (111)
Q Consensus 76 ~~i~~L~~e~~eL~~~l~~~e~~~ 99 (111)
+--.+|+.+++.|..+|.+|++..
T Consensus 13 AFaKRlk~sVKKLE~RLkKYepgS 36 (154)
T 1qzv_F 13 XXXXXEKQALKKLQASLKLYADDS 36 (154)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCC
Confidence 344556666677777777776643
No 353
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=22.78 E-value=32 Score=28.23 Aligned_cols=84 Identities=20% Similarity=0.390 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHhcCh-----HHHHHHHHHHHhcCCCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 10 EKNKEAFRRYLEQSGV-----VDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 10 dsKrEeFRkYLE~~GV-----lDaLTkvLV~LYEe~ekP~dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
+|-|.+|+.|.--.+. ++.|+..+ +-.--|.+.-.|.+-++..+ .+..+++.+...++.-..++..+...
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev----~~~Kt~eEV~~Y~~vFw~Ry-~Ei~d~erii~~IEkgE~ki~r~~~~ 199 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIAREL----APGKTLEEVRAYAKAFWSNI-ERIEDYEKYLKIIENEEEKIKRVKMQ 199 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSC----CCSSSHHHHHHHHHHHHHTC-SSCSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHH----ccCCCHHHHHHHHHHHHHhh-hhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4668888888755433 44443322 11233455666766666554 45577788889999999999999999
Q ss_pred HHHHHHHhcccccc
Q psy16078 85 VANLKERLSKYEVV 98 (111)
Q Consensus 85 ~~eL~~~l~~~e~~ 98 (111)
..-|..++.+|..+
T Consensus 200 ~~~L~~Ki~~y~~P 213 (374)
T 2y9y_A 200 QEALRRKLSEYKNP 213 (374)
T ss_dssp HHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHccCC
Confidence 99999999988765
No 354
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.72 E-value=80 Score=24.89 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhcccc
Q psy16078 80 QLTATVANLKERLSKYE 96 (111)
Q Consensus 80 ~L~~e~~eL~~~l~~~e 96 (111)
.|++++.+++..+.+.+
T Consensus 401 ~~~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 46666666666665544
No 355
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.72 E-value=1.3e+02 Score=24.50 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
++-|..+.+.++.+...+++++..++.+++.+.
T Consensus 58 ~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 58 YELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444555555666666666666666665543
No 356
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=22.54 E-value=2.4e+02 Score=22.47 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHhcCCCCC--CCHHHHHHHh---hCCCCCC-HHHHHHHHHHHHH
Q psy16078 11 KNKEAFRRYLEQSGVVDAITSALVMLYSIEEKP--EDPLDFIRRN---LGDERPE-VAEYEAVLQDLDE 73 (111)
Q Consensus 11 sKrEeFRkYLE~~GVlDaLTkvLV~LYEe~ekP--~dalefir~~---Lg~~~p~-~~e~e~Lk~E~~~ 73 (111)
.-.++||.+|.+ ++|.+...+-.+.+.+.+| .-.-++++.. +...-|+ ....+.+.+++++
T Consensus 19 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (511)
T 3vp6_A 19 NGEEQTVQFLLE--VVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRD 85 (511)
T ss_dssp TCHHHHHHHHHH--HHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHH--HHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHH
Confidence 458999999987 6899999999887766554 3346889998 6665554 3445555555443
No 357
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A*
Probab=22.46 E-value=81 Score=24.99 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=10.7
Q ss_pred hHHHHHHHHHhcC
Q psy16078 12 NKEAFRRYLEQSG 24 (111)
Q Consensus 12 KrEeFRkYLE~~G 24 (111)
-|+=||+||..+|
T Consensus 259 DKq~~R~~l~~~g 271 (306)
T 2cnq_A 259 DKQFLRDWLTANK 271 (306)
T ss_dssp STHHHHHHHHHTT
T ss_pred CHHHHHhHHhhcC
Confidence 5788999998766
No 358
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=22.07 E-value=1.3e+02 Score=19.27 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=25.9
Q ss_pred CCCCChhhHHHHHHHHHhc---ChHHHHHHHHHHH
Q psy16078 5 PETPNEKNKEAFRRYLEQS---GVVDAITSALVML 36 (111)
Q Consensus 5 ~~~~~dsKrEeFRkYLE~~---GVlDaLTkvLV~L 36 (111)
|+...|.+.+-+|.+..+. |.+++|.++|-.+
T Consensus 37 ~~d~~Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~~ 71 (86)
T 3oq9_A 37 IQDTAEQKVQLLLCWYQSHGKSDAYQDLIKGLKKA 71 (86)
T ss_dssp TTCCTTHHHHHHHHHHHHSCSSSHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHhCcchHHHHHHHHHHHc
Confidence 5667799999999999987 5778888877664
No 359
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.07 E-value=59 Score=25.88 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSKYEV 97 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e~ 97 (111)
|-.+...+..|+..++.++.+|.+|+.++.+++.
T Consensus 13 Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 13 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777888888888888877776654
No 360
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.96 E-value=1.4e+02 Score=20.18 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16078 46 PLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYE 96 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~e 96 (111)
.++-+.+.||. | -|...|+..+.+++.++..|-++..+.-.+|..+.
T Consensus 32 ~l~r~v~~LGT--~--kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~ 78 (130)
T 2dnx_A 32 QIKNLMSQLGT--K--QDSSKLQENLQQLQHSTNQLAKETNELLKELGSLP 78 (130)
T ss_dssp HHHHHHHHHCS--S--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC--C--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45557778888 3 34678888888888888888888887777777664
No 361
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=21.85 E-value=2.3e+02 Score=20.55 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 47 LDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 47 lefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
++-+...|.+=.|+.+++..++...++++.+.-.+++..+.
T Consensus 85 l~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 85 LTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678888888899999999999999999888887776553
No 362
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.66 E-value=1e+02 Score=26.23 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy16078 74 AKAELDQLTATVAN 87 (111)
Q Consensus 74 lk~~i~~L~~e~~e 87 (111)
++++++..+++++.
T Consensus 46 i~aeNeaikkrNa~ 59 (497)
T 3iox_A 46 LTAENTAIKKRNAD 59 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 363
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=21.64 E-value=83 Score=23.51 Aligned_cols=41 Identities=7% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 46 PLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
.++.|.+.+|-..| ++.|..+-++.++++++|.++.++...
T Consensus 202 lL~~l~~~~gl~i~----~~~L~e~Ae~~e~~i~~l~e~~~~~~~ 242 (252)
T 3gaa_A 202 IIEAINKAYNLKIK----TDLLEEQVKALDEQIKKIEEQYKELQE 242 (252)
T ss_dssp HHHHHHHHHCCCCC----CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57788888887544 355667777777777777776665433
No 364
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=21.61 E-value=1.3e+02 Score=23.85 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=34.5
Q ss_pred HHHHHHHhhCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccc
Q psy16078 46 PLDFIRRNLGDERPEVAE--YEAVLQDLDEAKAELDQLTAT-VANLKERLSKYEV 97 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e--~e~Lk~E~~~lk~~i~~L~~e-~~eL~~~l~~~e~ 97 (111)
.|+.|.+.+|- ..+ ++.|..+-++.+.++.+|-++ ..++..-+..+|.
T Consensus 220 lL~~L~~~~gl----~vp~~~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~ 270 (325)
T 3e35_A 220 VLEAITAATGL----VLPGIAHSLRTDAHRTQTEIDRQIQEGDEELIALVQGLEH 270 (325)
T ss_dssp HHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCcchHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45667777877 344 788888888888888888888 6666655555443
No 365
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=21.48 E-value=1.4e+02 Score=20.76 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy16078 59 PEVAEYEAVLQDLDEAKA 76 (111)
Q Consensus 59 p~~~e~e~Lk~E~~~lk~ 76 (111)
|=..|++.|+.+.+.+..
T Consensus 36 PL~~ELeRLr~~~d~~~K 53 (115)
T 3vem_A 36 PFLHELEKLRRESENSKK 53 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334556666555555444
No 366
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=21.45 E-value=1.7e+02 Score=20.60 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 64 YEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 64 ~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
+..+..++++++..+..|..+|+.+..++..
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4456666666666666666666665555543
No 367
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.35 E-value=1.8e+02 Score=24.03 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q psy16078 27 DAITSALVMLYSIEEKPED 45 (111)
Q Consensus 27 DaLTkvLV~LYEe~ekP~d 45 (111)
..+.+.|-..|...+|+..
T Consensus 58 ~~~v~~ik~~~~~~q~~~~ 76 (411)
T 3ghg_C 58 KQLIKAIQLTYNPDESSKP 76 (411)
T ss_dssp HHHHHHHHHHHCTTTCCCT
T ss_pred HHHHHHHHHhhccccCCCC
Confidence 3455666677766655533
No 368
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.31 E-value=1.6e+02 Score=18.35 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 55 GDERPEVAEYEAVLQDLDEAKAELDQLTATVAN 87 (111)
Q Consensus 55 g~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e~~e 87 (111)
+.+.|+. ++..||.+--.||.+|..+......
T Consensus 38 ~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 38 QQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp TTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3434555 8999999999999998888776554
No 369
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=21.28 E-value=1.1e+02 Score=20.05 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 67 VLQDLDEAKAELDQLTATVANLKE 90 (111)
Q Consensus 67 Lk~E~~~lk~~i~~L~~e~~eL~~ 90 (111)
+..++...-.++..|+.++.+|.+
T Consensus 61 V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 61 VELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444455555555555555544
No 370
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=21.26 E-value=2.4e+02 Score=22.02 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHhcCCC--CCCCHHHHHHHh---hCCCCC-CHHHHHHHHHHHH
Q psy16078 12 NKEAFRRYLEQSGVVDAITSALVMLYSIEE--KPEDPLDFIRRN---LGDERP-EVAEYEAVLQDLD 72 (111)
Q Consensus 12 KrEeFRkYLE~~GVlDaLTkvLV~LYEe~e--kP~dalefir~~---Lg~~~p-~~~e~e~Lk~E~~ 72 (111)
..++||+.+.+ ++|.+...+-.+.+.+. .|.-..+++++. +...-| .....+.+.+++.
T Consensus 17 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 81 (504)
T 2okj_A 17 GEEQTVQFLLE--VVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCR 81 (504)
T ss_dssp CHHHHHHHHHH--HHHHHHHHHHHHTCTTSCSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHH--HHHHHHHHHHhhccCCCCCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHH
Confidence 35789999875 78999999888877653 344346899998 766555 3333444444443
No 371
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=20.91 E-value=2.4e+02 Score=20.38 Aligned_cols=68 Identities=9% Similarity=0.014 Sum_probs=45.7
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcCCCCCC----------CHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 15 AFRRYLEQSGVVDAITSALVMLYSIEEKPE----------DPLDFIRRNLGDERPEVAEYEAVLQDLDEAKAELDQLTAT 84 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~LYEe~ekP~----------dalefir~~Lg~~~p~~~e~e~Lk~E~~~lk~~i~~L~~e 84 (111)
.+++-..-++.+=.|++=|.+.--|-.+.. |.+..+.+..|. ...+=++.+...+.+.-.++..+.++
T Consensus 189 ~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~--s~eeA~~~~~~~i~~~~~~~~~~~~~ 266 (300)
T 1di1_A 189 DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKL--GIPATKRVLWSMTREWETVHDEIVAE 266 (300)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777788887888776666654 899988888888 44444666666666666666555543
No 372
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.85 E-value=1.5e+02 Score=19.82 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLT 82 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~ 82 (111)
..|+.|+++|.++|..|+
T Consensus 50 ~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 373
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=20.80 E-value=1.1e+02 Score=21.84 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=24.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHH------hcCCCCCCCHHHHHH
Q psy16078 15 AFRRYLEQSGVVDAITSALVML------YSIEEKPEDPLDFIR 51 (111)
Q Consensus 15 eFRkYLE~~GVlDaLTkvLV~L------YEe~ekP~dalefir 51 (111)
+.+|--++..|++-|.++|-.+ --..+-|.+|-+-+.
T Consensus 28 ~L~Ka~~R~HILEGL~iAl~nIDeVI~iIR~S~~~~eAk~~Lm 70 (156)
T 3ku8_A 28 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALV 70 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467888888888888877544 334555666655554
No 374
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=20.69 E-value=1.3e+02 Score=18.44 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16078 61 VAEYEAVLQDLDEAKAELDQL 81 (111)
Q Consensus 61 ~~e~e~Lk~E~~~lk~~i~~L 81 (111)
-++|+.|..-+.+|+.++..+
T Consensus 34 ~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 34 LDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 375
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=20.67 E-value=21 Score=26.43 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 69 QDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+.+++.+++..|++++++|+.++++
T Consensus 256 ~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 256 SHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp --------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555555666666666555543
No 376
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=20.53 E-value=1e+02 Score=19.87 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16078 65 EAVLQDLDEAKAELDQLTATV 85 (111)
Q Consensus 65 e~Lk~E~~~lk~~i~~L~~e~ 85 (111)
+.|+.+++.|+.++..++..+
T Consensus 5 e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 5 EELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555555
No 377
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.49 E-value=1.3e+02 Score=17.22 Aligned_cols=32 Identities=9% Similarity=0.288 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVANLKERLSK 94 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~ 94 (111)
.+..++.++..++.++..+.+.+......+.+
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 378
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.49 E-value=1.7e+02 Score=18.76 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 63 EYEAVLQDLDEAKAELDQLTATVA 86 (111)
Q Consensus 63 e~e~Lk~E~~~lk~~i~~L~~e~~ 86 (111)
+|+.++.++..++..+.+|...+.
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~~~~~ 36 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVKRKHS 36 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 379
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=20.46 E-value=40 Score=20.25 Aligned_cols=19 Identities=42% Similarity=0.555 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhccc
Q psy16078 77 ELDQLTATVANLKERLSKY 95 (111)
Q Consensus 77 ~i~~L~~e~~eL~~~l~~~ 95 (111)
.+..|+.++..|...|.++
T Consensus 59 ~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 59 ELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444433
No 380
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.44 E-value=89 Score=20.95 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16078 62 AEYEAVLQDLDEAKAELDQLTATVANLKERLSKY 95 (111)
Q Consensus 62 ~e~e~Lk~E~~~lk~~i~~L~~e~~eL~~~l~~~ 95 (111)
+|+.+=+..-+.+..+.++|..++..|+.++.++
T Consensus 54 ~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 54 ADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555554444
No 381
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.42 E-value=1.9e+02 Score=19.05 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy16078 46 PLDFIRRNLGDERPEVAEYEAVLQDLD-EAKAELDQLTATVAN 87 (111)
Q Consensus 46 alefir~~Lg~~~p~~~e~e~Lk~E~~-~lk~~i~~L~~e~~e 87 (111)
-++=....||..+ |-..|+..++ +++.++..|.+++.+
T Consensus 21 ~l~k~~~qlGTkr----D~~~LR~~l~~~l~~~~~~L~k~~~~ 59 (97)
T 1hs7_A 21 VLEKECTKIGSKR----DSKELRYKIETELIPNCTSVRDKIES 59 (97)
T ss_dssp HHHHHHHHTTSSS----CCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888899943 3356777777 777777777777763
No 382
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=20.36 E-value=89 Score=18.36 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=6.2
Q ss_pred CCCCCHHHHHHHhh
Q psy16078 41 EKPEDPLDFIRRNL 54 (111)
Q Consensus 41 ekP~dalefir~~L 54 (111)
..+..|+.++++.+
T Consensus 90 g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 90 GKNTEAQQTLQQVA 103 (129)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 33444444444444
No 383
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.34 E-value=1.2e+02 Score=23.84 Aligned_cols=41 Identities=10% Similarity=0.145 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhcChH-----HHHHHHHHHHhcCCCC----CCCHHHHHHHh
Q psy16078 12 NKEAFRRYLEQSGVV-----DAITSALVMLYSIEEK----PEDPLDFIRRN 53 (111)
Q Consensus 12 KrEeFRkYLE~~GVl-----DaLTkvLV~LYEe~ek----P~dalefir~~ 53 (111)
+|...|+= ++.||- ..-...+..||.+... +.-+.+|.++.
T Consensus 179 ~R~~Irka-~k~Gv~v~~~~~e~l~~F~~l~~~T~~R~g~~~~~~~yf~~l 228 (426)
T 1lrz_A 179 RKRNTKKV-KKNGVKVRFLSEEELPIFRSFMEDTSESKAFADRDDKFYYNR 228 (426)
T ss_dssp HHHHHHHH-HTSSCEEEECCGGGHHHHHHHC------------CHHHHHHH
T ss_pred HHHHHHHH-HHCCcEEEEcCHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHH
Confidence 56677774 556752 2233566666665432 22366775544
No 384
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.21 E-value=1.2e+02 Score=19.78 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16078 69 QDLDEAKAELDQLTATVANLKER 91 (111)
Q Consensus 69 ~E~~~lk~~i~~L~~e~~eL~~~ 91 (111)
.+.+.|.++++.|+-.+.++.+.
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
Done!