RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16078
(111 letters)
>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 211
Score = 28.2 bits (62), Expect = 0.15
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 13 KEAFRRYLEQSGV-VDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDL 71
E F+ YL Q + AL + S + + G E+A YEA+L+++
Sbjct: 32 MEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEV 91
Query: 72 DEAKAELDQLTATVANLKERLSKYEVVESD 101
+ + + N+ +
Sbjct: 92 GLSLRDAAEAEPNRVNVSYMAYLKSTCALE 121
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 26.6 bits (57), Expect = 0.69
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 76 AELDQLTATVANLKERLSKYEVVESDQPISD 106
+ELDQL LK ++ +D +S
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACADATLSQ 32
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator
PH1161 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 215
Score = 26.3 bits (57), Expect = 0.88
Identities = 14/91 (15%), Positives = 29/91 (31%)
Query: 13 KEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDLD 72
E F+ Y+ Q + + + S + + + I + EV Y +L++LD
Sbjct: 36 LEKFKFYVLQDFNYLVGLTRALAVISSKAEYPLMAELIELARDEVTVEVENYVKLLKELD 95
Query: 73 EAKAELDQLTATVANLKERLSKYEVVESDQP 103
+ + T+ N
Sbjct: 96 LTLEDAIKTEPTLVNSAYMDFMLATAYKGNI 126
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related
At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 215
Score = 25.5 bits (55), Expect = 1.5
Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 12 NKEAFRRYLEQSGV-VDAITSALVMLYSIEEKPEDP---LDFIRRNLGDERPEVAEYEAV 67
+ +FR +L Q + V + + K ++ + + E+ ++
Sbjct: 32 DLSSFRTWLGQDYLFVRRFVPFVASVLIRACKDSGESSDMEVVLGGIASLNDEIEWFKRE 91
Query: 68 LQDLDEAKAELDQLTATVA 86
D + + A
Sbjct: 92 GSKWDVDFSTVVPQRANQE 110
>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus
subtilis [TaxId: 1423]}
Length = 225
Score = 25.5 bits (55), Expect = 1.6
Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 1/92 (1%)
Query: 13 KEAFRRYLEQSGV-VDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDL 71
+ F+ Y+ Q + + + G E+A + + L
Sbjct: 33 IDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELL 92
Query: 72 DEAKAELDQLTATVANLKERLSKYEVVESDQP 103
+ ++ E + Y V S
Sbjct: 93 EISEEERKAFKPSPTAYSYTSHMYRSVLSGNF 124
>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus
subtilis [TaxId: 1423]}
Length = 139
Score = 24.6 bits (52), Expect = 2.6
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 10 EKNKEAFRRYLE--QSGVVDAITS 31
EK E R+++ + + T
Sbjct: 5 EKACETLRKFMAYMLEKDMKSWTE 28
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator
SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId:
1313]}
Length = 217
Score = 24.3 bits (52), Expect = 3.6
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 13 KEAFRRYLEQSGV-VDAITSALVMLYSIEEKPEDPLDFIRRNLGDERPEVAEYEAVLQDL 71
+ + YL Q DA S L + +K E L F ++ E E ++ ++L
Sbjct: 41 NKVLKDYLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKEL 100
Query: 72 DEAKAELDQLTATVANLKERLSKYEVVESD 101
A+ + ++T + Y V S
Sbjct: 101 KVAENDYLEVTLHPVTKAFQDLMYSAVASS 130
>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 24.0 bits (51), Expect = 3.8
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 55 GDERPEVAEYEAVLQDLDEAKAELDQLTATVANLKERLSKYEVVESDQP 103
RP E + + +EA ++ + + +E SD
Sbjct: 22 QSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCS 70
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 292
Score = 24.0 bits (52), Expect = 5.9
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 21 EQSGVVDAITSALVMLYSIEEKPEDP 46
E+ GVV+ + S+EEKP +P
Sbjct: 142 ERYGVVEFDQGGKAI--SLEEKPLEP 165
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 75
Score = 22.8 bits (49), Expect = 6.7
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 53 NLGDERPEVAEYEAVLQD---------LDEAKAELDQLTATVANLKERLSKYEVVE 99
+ E + L + L+ AK E ++ A + +L++ LS+ ++E
Sbjct: 19 RERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVILE 74
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 23.6 bits (50), Expect = 6.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 6 ETPNEKNKEAFRRYLE 21
+ KN E F++Y E
Sbjct: 243 ALNDNKNMELFKKYRE 258
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 23.1 bits (49), Expect = 7.4
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 82 TATVANLKERLSKYEVVESDQ 102
ATV +LK+ + +Y ++ ++
Sbjct: 27 NATVLDLKKAIQRYVQLKQER 47
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 204
Score = 23.2 bits (50), Expect = 9.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 31 SALVMLYSIEEKPEDPLDFIRR 52
SAL++ SIE++ + + I+
Sbjct: 92 SALMIWGSIEKEHDKLHEEIQN 113
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 22.5 bits (48), Expect = 9.3
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 80 QLTATVANLKERLSKYEVVESDQ 102
LT V+ +K ++ + + + +
Sbjct: 29 PLTDQVSVIKVKIHEATGMPAGK 51
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 23.0 bits (49), Expect = 9.8
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 11 KNKEAFRRYLEQSGVVDAITSALVMLYSIEEKPEDPLDFIRR 52
+++ ++ + S I +AL I + D++
Sbjct: 22 EDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVG 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.129 0.340
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,440
Number of extensions: 16318
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 35
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.6 bits)