BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16082
         (252 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
           K+ Complex
 pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
           K+ Complex
 pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
           Na+ Complex
 pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
           Na+ Complex
          Length = 96

 Score = 33.1 bits (74), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 18/21 (85%)

Query: 230 SIYWSTLTLTTIGDLPQPETD 250
           ++Y+S +TLTT+GD P P+TD
Sbjct: 36  ALYFSVVTLTTVGDTPPPQTD 56


>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
           K+ Complex
 pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
           K+ Complex
 pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
           Na+ Complex
 pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
           Na+ Complex
          Length = 96

 Score = 31.2 bits (69), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 18/21 (85%)

Query: 230 SIYWSTLTLTTIGDLPQPETD 250
           ++Y+S +TLTT+G+ P P+TD
Sbjct: 36  ALYFSVVTLTTVGETPPPQTD 56


>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
           K+ Complex
 pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
           K+ Complex
 pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
           Na+ Complex
 pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
           Na+ Complex
          Length = 96

 Score = 31.2 bits (69), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 18/21 (85%)

Query: 230 SIYWSTLTLTTIGDLPQPETD 250
           ++Y+S +TLTT+G+ P P+TD
Sbjct: 36  ALYFSVVTLTTVGNTPPPQTD 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.144    0.483 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,188,898
Number of Sequences: 62578
Number of extensions: 325305
Number of successful extensions: 635
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 3
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)