Query psy16082
Match_columns 252
No_of_seqs 109 out of 1155
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 20:26:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orq_C Potassium channel; volt 99.9 1.7E-21 5.7E-26 158.6 11.3 174 48-251 9-191 (223)
2 2r9r_B Paddle chimera voltage 99.8 7.1E-20 2.4E-24 165.6 7.6 196 27-250 161-400 (514)
3 3beh_A MLL3241 protein; transm 99.7 7.3E-18 2.5E-22 146.2 3.8 179 39-251 3-187 (355)
4 3rvy_A ION transport protein; 99.4 3.8E-13 1.3E-17 113.0 5.5 173 47-250 30-207 (285)
5 2a9h_A Voltage-gated potassium 99.1 7.9E-11 2.7E-15 89.6 6.7 94 126-251 15-110 (155)
6 4dxw_A Navrh, ION transport pr 99.1 4.9E-10 1.7E-14 91.0 9.5 167 48-242 13-181 (229)
7 2kyh_A KVAP, voltage-gated pot 98.8 3.9E-09 1.3E-13 79.5 6.1 79 48-141 22-100 (147)
8 1ors_C Potassium channel; volt 98.8 3.9E-09 1.4E-13 78.2 5.8 80 47-141 6-85 (132)
9 2ih3_C Voltage-gated potassium 98.8 2.5E-09 8.5E-14 78.2 4.4 25 226-251 61-87 (122)
10 3eff_K Voltage-gated potassium 98.2 1.3E-06 4.5E-11 65.0 3.9 58 179-251 7-66 (139)
11 4h33_A LMO2059 protein; bilaye 98.1 1.1E-06 3.7E-11 65.3 3.0 24 227-251 44-69 (137)
12 2k1e_A Water soluble analogue 98.1 7.2E-07 2.5E-11 63.0 1.1 59 179-252 7-67 (103)
13 3vou_A ION transport 2 domain 97.9 1.6E-05 5.6E-10 59.7 5.4 52 179-251 25-78 (148)
14 2q67_A Potassium channel prote 97.9 8.1E-05 2.8E-09 53.3 8.7 24 226-250 49-74 (114)
15 3ldc_A Calcium-gated potassium 97.7 4.5E-05 1.5E-09 51.2 4.6 25 226-251 28-54 (82)
16 3ouf_A Potassium channel prote 97.7 5.8E-05 2E-09 52.4 5.2 50 180-250 6-57 (97)
17 1xl4_A Inward rectifier potass 97.4 0.00027 9.1E-09 59.3 6.2 51 185-250 55-107 (301)
18 4gx0_A TRKA domain protein; me 97.2 0.00053 1.8E-08 62.5 6.6 58 176-250 16-76 (565)
19 3sya_A G protein-activated inw 96.9 0.0042 1.4E-07 52.7 9.1 60 183-249 49-115 (340)
20 1p7b_A Integral membrane chann 96.8 0.00048 1.6E-08 58.5 2.2 23 227-250 97-121 (333)
21 3pjs_K KCSA, voltage-gated pot 96.6 0.00025 8.5E-09 54.2 -0.8 26 226-252 67-94 (166)
22 3spc_A Inward-rectifier K+ cha 96.5 0.0046 1.6E-07 52.5 6.4 59 182-247 50-116 (343)
23 3um7_A Potassium channel subfa 96.3 0.0092 3.2E-07 50.0 7.3 24 227-251 225-250 (309)
24 2qks_A KIR3.1-prokaryotic KIR 96.3 0.0097 3.3E-07 50.2 7.4 24 226-250 78-103 (321)
25 3um7_A Potassium channel subfa 95.7 0.0057 1.9E-07 51.2 2.9 24 226-250 115-140 (309)
26 3ukm_A Potassium channel subfa 95.6 0.0066 2.3E-07 50.1 3.0 24 227-251 202-227 (280)
27 3ukm_A Potassium channel subfa 95.6 0.0053 1.8E-07 50.7 2.4 24 226-250 93-118 (280)
28 1lnq_A MTHK channels, potassiu 94.4 0.0084 2.9E-07 50.8 0.4 22 229-251 48-71 (336)
29 1ors_C Potassium channel; volt 45.4 17 0.00058 25.8 3.2 19 148-166 95-113 (132)
30 1orq_C Potassium channel; volt 45.3 58 0.002 24.9 6.6 18 146-163 98-115 (223)
31 2kyh_A KVAP, voltage-gated pot 33.1 36 0.0012 24.7 3.3 14 80-93 63-76 (147)
32 4dxw_A Navrh, ION transport pr 21.0 1E+02 0.0035 23.6 4.2 16 78-93 74-89 (229)
No 1
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.86 E-value=1.7e-21 Score=158.57 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccch
Q psy16082 48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAF 127 (252)
Q Consensus 48 ~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f 127 (252)
.||.+++++++++.+.+.+.... ..+++....+..+|.+++++|.+|+++|+.++ +.+++|+|+ +
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~------------~~~~~y~~~--~ 73 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTM-QLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDPAGYVKK--T 73 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHH-HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT------------SCHHHHHHH--H
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHHHHHHccc------------ccHHHHHHH--h
Confidence 48889989999998887776332 22334566788999999999999999999987 224789986 7
Q ss_pred HhHHHHhhhHHHHHhh-hC--CcchhHHHHHHHHHHHHHHHHHHHh---h-hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16082 128 MLDIISLLPLDLLYFK-IG--VNPMLRFPRFLKVYRVYDYYYIVES---R-TVYPNLWRVVNLVHILLIFAHWFGCFYYL 200 (252)
Q Consensus 128 ~~Dlis~lP~~~~~~~-~~--~~~~l~~lrllr~~rl~~~~~~~~~---~-~~~~~~~~l~~l~~~~l~~~H~~aC~~~~ 200 (252)
++|+++++|+...... .+ ....+|++|++|+.|+.|..+..++ . .......++..++..+++..|+.||++|.
T Consensus 74 iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (223)
T 1orq_C 74 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI 153 (223)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999865421 11 1245666666666666665542111 0 00011124666777888889999999988
Q ss_pred HHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 201 LSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 201 i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
+.... + ++...+|..|+||+++||||+| |+ +|.|..
T Consensus 154 ~e~~~----------~----~~~~~~~~~s~y~~~~t~tTvGyGdi-~P~t~~ 191 (223)
T 1orq_C 154 VEYPD----------P----NSSIKSVFDALWWAVVTATTVGYGDV-VPATPI 191 (223)
T ss_dssp TTSSS----------T----TCSCCSHHHHHHHHHHHHTTCCCCSS-CCCSHH
T ss_pred HHhCC----------c----CCCcCcchhHHHhHHhHHhccCCCCC-CCCCHh
Confidence 74311 0 1113468889999999999999 66 998864
No 2
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.79 E-value=7.1e-20 Score=165.56 Aligned_cols=196 Identities=15% Similarity=0.299 Sum_probs=129.7
Q ss_pred cccccccCCCeeEcCC-ChhHHHHHHHHHHHHHHHHHHHHHhhccccccc--------------------------cCCc
Q psy16082 27 RCRRKKVHHSTVVNPD-SNLYFYWLLIITCCVLYNLWTLIVRQSFPELQE--------------------------NGAK 79 (252)
Q Consensus 27 ~~~~~~~~~~~ii~P~-s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~--------------------------~~~~ 79 (252)
+.+.|++.+..+-+|+ |...+.++.+++++++.+.+++.+. +++..+. ....
T Consensus 161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~le-T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2r9r_B 161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLE-TLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTD 239 (514)
T ss_dssp SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCC
T ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccccccccccccccccccchhhh
Confidence 3344455555555686 5778999999999999998888776 4432111 1234
Q ss_pred cchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhhhC----------Ccch
Q psy16082 80 FWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIG----------VNPM 149 (252)
Q Consensus 80 ~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~----------~~~~ 149 (252)
.+..+|.++.++|++|+++|+.++ ..+.+|+|++|.++|+++++|+.+...... ....
T Consensus 240 ~l~~ie~i~~~iFtiE~ilR~~~~------------~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~ 307 (514)
T 2r9r_B 240 PFFIVETLCIIWFSFEFLVRFFAC------------PSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRV 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS------------SCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------------CcHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Confidence 567899999999999999999976 112589999889999999999876443311 1224
Q ss_pred hHHHHHHHHHHHHHHHHHHH---h--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchH
Q psy16082 150 LRFPRFLKVYRVYDYYYIVE---S--RTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLT 224 (252)
Q Consensus 150 l~~lrllr~~rl~~~~~~~~---~--~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~ 224 (252)
+|++|++|++|++|..+..+ . .........+..+++.+++..+++||+.|...... . .+.+
T Consensus 308 lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~----------~----~~~F 373 (514)
T 2r9r_B 308 VQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADE----------R----DSQF 373 (514)
T ss_dssp HHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------T----TCSC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccC----------C----Cccc
Confidence 55555555555554433221 1 12223333455566667777888999888663210 1 1123
Q ss_pred HHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082 225 RKYLGSIYWSTLTLTTIG--DLPQPETD 250 (252)
Q Consensus 225 ~~Y~~slywai~tlttvG--d~~~P~t~ 250 (252)
..|..|+||+++||||+| |+ .|.|.
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi-~P~t~ 400 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDM-VPTTI 400 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSS-CCCSH
T ss_pred cchhhhhheeeeEEEecccCCC-CCCCc
Confidence 346679999999999999 66 89874
No 3
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.69 E-value=7.3e-18 Score=146.17 Aligned_cols=179 Identities=10% Similarity=0.142 Sum_probs=108.8
Q ss_pred EcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHH
Q psy16082 39 VNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLA 118 (252)
Q Consensus 39 i~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~ 118 (252)
..|+|+.. +.+++++++.+.+.+... +.+.........+..++.++-++|++|+++++..+ +-.
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~------------~~~ 66 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAAL-TIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR------------RAG 66 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CSC
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHH-cccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc------------ccc
Confidence 45777743 666666677777777766 45432222222234455565566899999988533 111
Q ss_pred HHHhcccchHhHHHHh-hhHHHHHhhhCCcchhHHHHHHHHHHHHHH---HHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy16082 119 GHYVKSRAFMLDIISL-LPLDLLYFKIGVNPMLRFPRFLKVYRVYDY---YYIVESRTVYPNLWRVVNLVHILLIFAHWF 194 (252)
Q Consensus 119 ~~Yl~~~~f~~Dlis~-lP~~~~~~~~~~~~~l~~lrllr~~rl~~~---~~~~~~~~~~~~~~~l~~l~~~~l~~~H~~ 194 (252)
..|.++++.++|++++ +|+..... ...+.+|++|++|++|+.|. ++.+.. .......++..++..++++.|+.
T Consensus 67 ~~~~~~~~~i~Dl~~i~~p~~~~~~--~~~~~~r~lr~~R~lrl~r~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~~~~~ 143 (355)
T 3beh_A 67 VVRDRTPKIAIDVLAVLVPLAAFLL--DGSPDWSLYCAVWLLKPLRDSTFFPVLGR-VLANEARNLIGVTTLFGVVLFAV 143 (355)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHS--CCSGGGGGGGGGGGSHHHHTCSSHHHHHH-HHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ceeccCcchHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355566899999999 68865432 22234444444444444443 333222 12223345667777788899999
Q ss_pred HHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 195 GCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 195 aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
||++|.+.... ..+.+..|..|+||+++||||+| |+ +|.|+.
T Consensus 144 a~~~~~~e~~~--------------~~~~f~~~~~s~y~~~~t~ttvGygd~-~p~t~~ 187 (355)
T 3beh_A 144 ALAAYVIERDI--------------QPEKFGSIPQAMWWAVVTLSTTGYGDT-IPQSFA 187 (355)
T ss_dssp HHHHHHHHTTT--------------CHHHHSSHHHHHHHHHHHHTTCCCSSS-CCCSHH
T ss_pred HHHHHHhhcCC--------------CCcccccHHHHHHHHHhheeecCCCCC-CCCChh
Confidence 99999987521 12235568889999999999999 66 998854
No 4
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.37 E-value=3.8e-13 Score=113.02 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccc
Q psy16082 47 FYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRA 126 (252)
Q Consensus 47 ~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~ 126 (252)
..++.+++++++.+.+.+.+.. ++.........+..+|.++.++|++|+++|+... + .+|++++|
T Consensus 30 ~~f~~~i~~li~l~~i~~~~~~-~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~----------~----~~y~~~~w 94 (285)
T 3rvy_A 30 SFFTKFIIYLIVLNGITMGLET-SKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH----------R----ISFFKDPW 94 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT----------G----GGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h----HHHHcCCh
Confidence 3678888888888888777663 3322333445567899999999999999999875 2 57999999
Q ss_pred hHhHHHHhhhHHHHHhhhCCcchhHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16082 127 FMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVES--RTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQA 204 (252)
Q Consensus 127 f~~Dlis~lP~~~~~~~~~~~~~l~~lrllr~~rl~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~ 204 (252)
.++|+++++|... ...+.-+.+|++|++|++|+.++...++. .......-.+..+...++++.-.+|++-+.+-..
T Consensus 95 n~~Dl~~v~~~~i--~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~ 172 (285)
T 3rvy_A 95 SLFDFFVVAISLV--PTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGE 172 (285)
T ss_dssp HHHHHHHHHHHHS--CSSSSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999988742 12222345566666666555555433332 1111222234444444444444555543333221
Q ss_pred cCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC---CCCCCCCC
Q psy16082 205 EGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG---DLPQPETD 250 (252)
Q Consensus 205 ~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG---d~~~P~t~ 250 (252)
...+.+..+..|+||+++++||+| |++.|.+.
T Consensus 173 --------------~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~ 207 (285)
T 3rvy_A 173 --------------RFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLME 207 (285)
T ss_dssp --------------TCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHT
T ss_pred --------------ccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 012235556679999999999997 44346543
No 5
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.13 E-value=7.9e-11 Score=89.64 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=35.3
Q ss_pred chHhHHHHhhhHHHHHhhhCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16082 126 AFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAE 205 (252)
Q Consensus 126 ~f~~Dlis~lP~~~~~~~~~~~~~l~~lrllr~~rl~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~ 205 (252)
+-+.|+++++|.. |.+|++|++|++ +... ........ +...++.+++..-+.|+++|.+....
T Consensus 15 ~~~~dli~~lp~l------------r~lRllRi~ril-l~r~--~~~l~~~~--~~~~~~~~~~~i~~~a~~~~~~E~~~ 77 (155)
T 2a9h_A 15 EGRGRLIKHMPPM------------LSGLLARLVKLL-LGRH--GSALHWRA--AGAATVLLVIVLLAGSYLAVLAERGA 77 (155)
T ss_dssp ----------------------------------------------CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHH------------HHHHHHHHHHHH-HHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4589999999983 455555555554 2111 11111111 11222223333445666666665321
Q ss_pred CCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 206 GFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 206 ~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
+ .+.+..|..|+||+++|+||+| |+ +|.|+.
T Consensus 78 ----------~----~~~~~s~~~a~y~s~vTltTVGYGDi-~P~t~~ 110 (155)
T 2a9h_A 78 ----------P----GAALISYPDALWWSVETATTVGYGDL-YPVTLW 110 (155)
T ss_dssp ----------S----CSSTTSHHHHHHHHHHHHTTCCCSSS-CCCSHH
T ss_pred ----------C----CCccCcccceeheeeeeeecccCCCC-CCCChh
Confidence 0 1223457779999999999999 77 998853
No 6
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.07 E-value=4.9e-10 Score=90.97 Aligned_cols=167 Identities=16% Similarity=0.157 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccch
Q psy16082 48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAF 127 (252)
Q Consensus 48 ~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f 127 (252)
.++.++.++++.+.+....+. .+ ..+........+|.++.++|.+|+++|+... .-.++|.+++|.
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~~-~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~------------~~~~~y~~~~wn 78 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-YE-LDPLFLETIHLLDYGITIFFVIEILIRFIGE------------KQKADFFKSGWN 78 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-SS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcc-CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------CchhHHhcCCcH
Confidence 567788888888877665442 32 1222234456799999999999999998764 234689999999
Q ss_pred HhHHHHhhhHHHHHhhhCCcchhHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16082 128 MLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVES--RTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAE 205 (252)
Q Consensus 128 ~~Dlis~lP~~~~~~~~~~~~~l~~lrllr~~rl~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~ 205 (252)
++|++.++|...-.........+|++|++|++|+.|..+.++. .......-.+..+...++++...+|++-+.+-..
T Consensus 79 i~D~~~v~~~~i~~~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~- 157 (229)
T 4dxw_A 79 IFDTVIVAISLIPIPNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGN- 157 (229)
T ss_dssp HHHHHHHHHTTCC--------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 9998877764321111112234566666666666665554443 2233344455566666666666666643333221
Q ss_pred CCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC
Q psy16082 206 GFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG 242 (252)
Q Consensus 206 ~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG 242 (252)
.++.+.++ ...|++|.+.++|+.|
T Consensus 158 ---------~~~~~F~~----~~~a~~~lf~~~t~~~ 181 (229)
T 4dxw_A 158 ---------DDPSRWGD----LGISLITLFQVLTLSS 181 (229)
T ss_dssp ---------TSCTTTSS----HHHHHHHHHHHHTTSS
T ss_pred ---------CCcccccC----HHHHHHHHHHHHccCC
Confidence 11123344 4449999999999998
No 7
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.85 E-value=3.9e-09 Score=79.46 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccch
Q psy16082 48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAF 127 (252)
Q Consensus 48 ~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f 127 (252)
.|+.++.++++.+.+.+.+....+. +.+....+..+|.++.++|++|+++++..+ +-.++|+++ -
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i-~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a------------~~k~~f~~~--~ 86 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQL-SGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDPAGYVKK--T 86 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCHHHHHHH--S
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CcHHHHHHH--H
Confidence 4788888888888777777644322 222334567899999999999999999976 334578887 4
Q ss_pred HhHHHHhhhHHHHH
Q psy16082 128 MLDIISLLPLDLLY 141 (252)
Q Consensus 128 ~~Dlis~lP~~~~~ 141 (252)
++|+++++|+....
T Consensus 87 iiDllailP~~~~~ 100 (147)
T 2kyh_A 87 LYEIPALVPAGLLA 100 (147)
T ss_dssp TTTHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999997544
No 8
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.84 E-value=3.9e-09 Score=78.18 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccc
Q psy16082 47 FYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRA 126 (252)
Q Consensus 47 ~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~ 126 (252)
+.++.+++++++.+.+.+..+ ++++.+......+..+|.++.++|.+|+++|+..+ +-..+|++ +
T Consensus 6 ~~f~~~i~~lIlls~~~~~~e-t~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~------------~~~~~y~~--~ 70 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVE-YTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDPAGYVK--K 70 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TSTTTTTT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHH--H
Confidence 456888888888888777766 34332222334566899999999999999999875 22457888 6
Q ss_pred hHhHHHHhhhHHHHH
Q psy16082 127 FMLDIISLLPLDLLY 141 (252)
Q Consensus 127 f~~Dlis~lP~~~~~ 141 (252)
.++|+++++|+....
T Consensus 71 niiDllailp~~~~~ 85 (132)
T 1ors_C 71 TLYEIPALVPAGLLA 85 (132)
T ss_dssp CGGGTGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 799999999987543
No 9
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=98.83 E-value=2.5e-09 Score=78.15 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 226 KYLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 226 ~Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
.|.+|+||+++|+||+| |+ +|.|+.
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi-~P~t~~ 87 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDL-YPVTLW 87 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSS-CCCSHH
T ss_pred ccccchhheeeeeeeeecCCC-CCCCcc
Confidence 47779999999999999 77 998853
No 10
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=98.15 E-value=1.3e-06 Score=65.03 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 179 RVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 179 ~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
.++..++.++...+..|++++.+..... .+....|..|+||+++|+||+| |+ .|.|+.
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~~--------------~~~~~~~~~a~yf~~~T~tTvGyGd~-~P~t~~ 66 (139)
T 3eff_K 7 AAGAATVLLVIVLLAGSYLAVLAERGAP--------------GAQLITYPRALWWSVETATTVGYGDL-YPVTLW 66 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSCT--------------TCCCCCHHHHHHHHHHHHTTCCCSSS-CCCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------CcccCCHHHHHHHHheeeecccCCCC-cCCCcC
Confidence 3445555566666777777777654221 1112346779999999999999 77 998864
No 11
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=98.13 E-value=1.1e-06 Score=65.32 Aligned_cols=24 Identities=38% Similarity=0.870 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 227 YLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 227 Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
|.+|+||+++|+|||| |+ +|.|+.
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi-~P~t~~ 69 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDI-VPVTPI 69 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSS-CCCSHH
T ss_pred HHHHHHHHHHHHHcccCCCC-CCCCHh
Confidence 7779999999999999 77 999864
No 12
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.08 E-value=7.2e-07 Score=62.95 Aligned_cols=59 Identities=20% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCCC
Q psy16082 179 RVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDVE 252 (252)
Q Consensus 179 ~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~E 252 (252)
+++..+..++.+....|++++.+....+ .+....|..|+||+++|+||+| |+ .|.|..+
T Consensus 7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~--------------~~~~~~~~~a~y~~~~T~tTvGyGDi-~P~t~~g 67 (103)
T 2k1e_A 7 EAQKAEEELQKVLEEASKKAVEAERGAP--------------GAALISYPDAIWWSVETATTVGYGDR-YPVTEEG 67 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTST--------------TCCCCCGGGTTTTTTGGGGCCSCCSS-CCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCC--------------CcccccHHHHHHHHHHHHhcccCCCC-CCCChhH
Confidence 3444555666667778888888765211 1112246669999999999999 77 9998754
No 13
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=97.88 E-value=1.6e-05 Score=59.70 Aligned_cols=52 Identities=27% Similarity=0.566 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 179 RVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 179 ~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
+.+..++.++++.++.|++.|.... +| .|..|+||+++|+||+| |+ .|.|..
T Consensus 25 ~~~~~~~~~~~~~~~~g~~~~~~~e------~~--------------~~~~a~y~~~~t~tTvGyGd~-~p~t~~ 78 (148)
T 3vou_A 25 KEFQVLFVLTFLTLTSGTIFYSTVE------GL--------------RPLDALYFSVVTLTTVGDGNF-SPQTDF 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS------CC--------------CHHHHHHHHHHHHTTCCCSSC-CCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CC--------------CHHHHHHHHHHHHHccCCCCC-CCCCcc
Confidence 3455566667777788888776421 12 36779999999999999 77 998753
No 14
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=97.87 E-value=8.1e-05 Score=53.27 Aligned_cols=24 Identities=42% Similarity=0.887 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082 226 KYLGSIYWSTLTLTTIG--DLPQPETD 250 (252)
Q Consensus 226 ~Y~~slywai~tlttvG--d~~~P~t~ 250 (252)
.|.+|+||+++|+||+| |+ .|.|+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi-~P~t~ 74 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNF-SPQTD 74 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSC-CCCSH
T ss_pred CHHHHHHHHHHHhcceeCCCC-ccCCH
Confidence 36679999999999999 77 89875
No 15
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=97.69 E-value=4.5e-05 Score=51.23 Aligned_cols=25 Identities=36% Similarity=0.830 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 226 KYLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 226 ~Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
.|.+|+||+++|+||+| |+ .|.|+.
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi-~P~t~~ 54 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDY-SPHTPL 54 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSS-CCCSHH
T ss_pred CHHHHHHHHHHHhcccCCCCC-CCCCcc
Confidence 36669999999999999 77 998753
No 16
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=97.68 E-value=5.8e-05 Score=52.41 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082 180 VVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD 250 (252)
Q Consensus 180 l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~ 250 (252)
.+...+.++++....+++.|.... +| .|.+|+||+++|+||+| |+ .|.|+
T Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~e------~~--------------~~~~a~yf~~~T~tTvGyGdi-~P~t~ 57 (97)
T 3ouf_A 6 EFQVLFVLTILTLISGTIFYSTVE------GL--------------RPIDALYFSVVTLTTVGYGDF-SPQTD 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS------CC--------------CHHHHHHHHHHHHTTCCCCSS-CCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------CC--------------CHHHHHHHHHHHHHccCCCCC-CCCCc
Confidence 445555666667777777765431 12 36679999999999999 77 99875
No 17
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=97.37 E-value=0.00027 Score=59.31 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082 185 HILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD 250 (252)
Q Consensus 185 ~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~ 250 (252)
..+++...++|++|+..+.. . .... ...|..|+||+++|+||+| |+ +|.|.
T Consensus 55 ~~~~~~~l~fa~ly~~~~~~--~--------~~~~----~~s~~~a~yfs~vT~tTvGYGDi-~P~t~ 107 (301)
T 1xl4_A 55 GLYLVTNALFALAYLACGDV--I--------ENAR----PGSFTDAFFFSVQTMATIGYGKL-IPIGP 107 (301)
T ss_dssp HHHHHHHHHHHHHHHHTCSC--S--------TTSC----TTCHHHHHHHHHHHHTTCCCSSS-CCCHH
T ss_pred HHHHHHHHHHHHHHHhhccc--c--------CCCC----cCCHHHHHHHhhhheeccCCCCC-cCCCH
Confidence 33445567889996665411 0 0011 2346679999999999999 76 89764
No 18
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=97.19 E-value=0.00053 Score=62.52 Aligned_cols=58 Identities=28% Similarity=0.540 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082 176 NLWRVVNLVHILLIFAHWFGCFYYLLSQ-AEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD 250 (252)
Q Consensus 176 ~~~~l~~l~~~~l~~~H~~aC~~~~i~~-~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~ 250 (252)
...++...++.++++.++.+|+++++.. .++. .| .|..|+||+++|+||+| |+ +|.|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~--------------~~~~~~y~~~~t~tTvGygd~-~p~~~ 76 (565)
T 4gx0_A 16 NLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGR--AY--------------SFMAGIYWTITVMTTLGFGDI-TFESD 76 (565)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC--------------CHHHHHHHHHHHHTTCCCCSS-CCCSH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CC--------------chhhhhheeeeeeeeecCCCc-CCCCc
Confidence 3445677777778888888888777654 2221 11 24569999999999999 77 88875
No 19
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=96.91 E-value=0.0042 Score=52.74 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-----CCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCC
Q psy16082 183 LVHILLIFAHWFGCFYYLLSQAEGF-----YGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPET 249 (252)
Q Consensus 183 l~~~~l~~~H~~aC~~~~i~~~~~~-----~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t 249 (252)
++..+++..-.+|++||.++...+. +.+|..-. .+..+ +..++||+++|+||+| |+ +|.+
T Consensus 49 f~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv--~~~~s----f~~af~fSv~T~TTvGYGd~-~p~~ 115 (340)
T 3sya_A 49 FVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCV--TNLNG----FVSAFLFSIETETTIGYGYR-VITD 115 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSB--SCCCS----TTHHHHHHHHHHSCCCCSSS-CBCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccchh--ccccC----HHHHHhhhheeeeeecCCCc-cCcC
Confidence 3334455556789999998854221 11221100 11233 3349999999999999 66 8863
No 20
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=96.78 E-value=0.00048 Score=58.51 Aligned_cols=23 Identities=39% Similarity=0.878 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082 227 YLGSIYWSTLTLTTIG--DLPQPETD 250 (252)
Q Consensus 227 Y~~slywai~tlttvG--d~~~P~t~ 250 (252)
|..|+||+++|+||+| |+ +|.|.
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi-~P~t~ 121 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDM-HPQTV 121 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCC-CCCSH
T ss_pred HHHhHhhhheeeeecCCCCC-cCCCH
Confidence 5569999999999999 76 99874
No 21
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=96.58 E-value=0.00025 Score=54.23 Aligned_cols=26 Identities=42% Similarity=0.641 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCCCCCC
Q psy16082 226 KYLGSIYWSTLTLTTIG--DLPQPETDVE 252 (252)
Q Consensus 226 ~Y~~slywai~tlttvG--d~~~P~t~~E 252 (252)
.|..|+||+++|+||+| |+ +|.|+.+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi-~P~t~~~ 94 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDL-YPVTLWG 94 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSS-CCCSSTT
T ss_pred CHHHHHHHHHHHhccccCCCC-CCCCHhH
Confidence 45669999999999999 77 9998764
No 22
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=96.49 E-value=0.0046 Score=52.51 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC------CCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCC
Q psy16082 182 NLVHILLIFAHWFGCFYYLLSQAEGF------YGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQP 247 (252)
Q Consensus 182 ~l~~~~l~~~H~~aC~~~~i~~~~~~------~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P 247 (252)
-++..+++..-.+|.+||+++...+. +++|..-. .+..+ +..++||+++|+||+| |+ +|
T Consensus 50 ~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv--~~~~s----f~~af~fSv~T~TTvGYGd~-~p 116 (343)
T 3spc_A 50 LFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCV--LQVNG----FVAAFLFSIETQTTIGYGFR-CV 116 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSE--ETCCS----HHHHHHHHHHHHSCCCCSSS-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccc--cccCC----HHHHhheeeeeeEeecCCCc-cC
Confidence 33345566677788999998765321 11231100 11233 4559999999999999 55 55
No 23
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=96.34 E-value=0.0092 Score=49.95 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 227 YLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 227 Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
|++|+||+++|+|||| |+ .|.|+.
T Consensus 225 ~~da~y~~~vTltTvGyGd~-~p~t~~ 250 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDY-VAGADP 250 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSC-CTTCCT
T ss_pred HHHHHHHHHhheeccccCCC-CCCCcc
Confidence 6679999999999999 77 898875
No 24
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=96.32 E-value=0.0097 Score=50.20 Aligned_cols=24 Identities=38% Similarity=0.740 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082 226 KYLGSIYWSTLTLTTIG--DLPQPETD 250 (252)
Q Consensus 226 ~Y~~slywai~tlttvG--d~~~P~t~ 250 (252)
.|..|+||+++||||+| |+ .|.|.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi-~P~t~ 103 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDM-HPQTV 103 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSS-CBCSH
T ss_pred chhheeeeeeEEeccccCCCc-CcccH
Confidence 35669999999999999 77 89874
No 25
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=95.66 E-value=0.0057 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082 226 KYLGSIYWSTLTLTTIG--DLPQPETD 250 (252)
Q Consensus 226 ~Y~~slywai~tlttvG--d~~~P~t~ 250 (252)
.|..|+||+++|+||+| |+ +|.|+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi-~P~T~ 140 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNV-ALRTD 140 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSS-CCCSH
T ss_pred ChhhhhHhhheeeeecccCCC-CCCCc
Confidence 58889999999999999 66 99985
No 26
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=95.58 E-value=0.0066 Score=50.08 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 227 YLGSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 227 Y~~slywai~tlttvG--d~~~P~t~~ 251 (252)
|++|+||+++|+||+| |+ .|.|+.
T Consensus 202 ~~da~y~~~iTltTvGyGD~-~p~t~~ 227 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDY-VPGEGY 227 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSC-CSSCSS
T ss_pred hhhhhhheeeeeecccCCCC-CCCCCc
Confidence 5679999999999999 77 898863
No 27
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=95.58 E-value=0.0053 Score=50.66 Aligned_cols=24 Identities=21% Similarity=0.573 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082 226 KYLGSIYWSTLTLTTIG--DLPQPETD 250 (252)
Q Consensus 226 ~Y~~slywai~tlttvG--d~~~P~t~ 250 (252)
.|..|+||+++|+||+| |+ +|.|+
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~-~P~T~ 118 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHT-VPLSD 118 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSS-CCCSH
T ss_pred ChhcchhheeeeeeccccCCc-CCCCc
Confidence 57789999999999999 66 99985
No 28
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=94.37 E-value=0.0084 Score=50.77 Aligned_cols=22 Identities=41% Similarity=0.896 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082 229 GSIYWSTLTLTTIG--DLPQPETDV 251 (252)
Q Consensus 229 ~slywai~tlttvG--d~~~P~t~~ 251 (252)
.|+||+++|+||+| |+ .|.|..
T Consensus 48 ~a~y~~~~t~tTvGyGd~-~p~t~~ 71 (336)
T 1lnq_A 48 VSLYWTFVTIATVGYGDY-SPSTPL 71 (336)
T ss_dssp TTHHHHHHHHTTCCCSSC-CCCCSS
T ss_pred HHHHHHHHHhhcccCCCC-CCCCcC
Confidence 39999999999999 66 898864
No 29
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=45.41 E-value=17 Score=25.77 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=8.8
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy16082 148 PMLRFPRFLKVYRVYDYYY 166 (252)
Q Consensus 148 ~~l~~lrllr~~rl~~~~~ 166 (252)
+.+|++|++|++|+.++..
T Consensus 95 r~lRllRv~Rvlkl~r~~~ 113 (132)
T 1ors_C 95 GLFRLVRLLRFLRILLIIS 113 (132)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444443
No 30
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=45.33 E-value=58 Score=24.92 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=11.9
Q ss_pred CcchhHHHHHHHHHHHHH
Q psy16082 146 VNPMLRFPRFLKVYRVYD 163 (252)
Q Consensus 146 ~~~~l~~lrllr~~rl~~ 163 (252)
..+.+|++|++|+.|+.+
T Consensus 98 ~lr~lRllRllR~~r~~~ 115 (223)
T 1orq_C 98 LFRLVRLLRFLRILLIIS 115 (223)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777777777655
No 31
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=33.14 E-value=36 Score=24.66 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=6.6
Q ss_pred cchhhhHHHHHHHH
Q psy16082 80 FWFFCDYTTDTFIV 93 (252)
Q Consensus 80 ~~~~~~~~~~~if~ 93 (252)
.++.+|++.-....
T Consensus 63 ~iF~~Ey~lRl~~a 76 (147)
T 2kyh_A 63 IILWADYAYRAYKS 76 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
Confidence 34445555544444
No 32
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=21.03 E-value=1e+02 Score=23.60 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=8.8
Q ss_pred CccchhhhHHHHHHHH
Q psy16082 78 AKFWFFCDYTTDTFIV 93 (252)
Q Consensus 78 ~~~~~~~~~~~~~if~ 93 (252)
...|..+|.+..+...
T Consensus 74 ~~~wni~D~~~v~~~~ 89 (229)
T 4dxw_A 74 KSGWNIFDTVIVAISL 89 (229)
T ss_dssp -CHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHH
Confidence 4556667766555443
Done!