RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16082
         (252 letters)



>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 145

 Score = 27.0 bits (60), Expect = 1.3
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 5/32 (15%)

Query: 143 KIGVNPMLRFPRFLKVYRVYDYYY-----IVE 169
            IG++P+  F R   ++ V D+YY     ++E
Sbjct: 51  SIGIDPLSLFDRDKHLFTVNDFYYEVCLKVIE 82


>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
           {Archaeon Methanothermobacter thermautotrophicus [TaxId:
           145262]}
          Length = 80

 Score = 25.0 bits (55), Expect = 2.7
 Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 227 YLGSIYWSTLTLTTIG-DLPQPETDVE 252
           +  S+YW+ +T+ T+G     P T + 
Sbjct: 28  WTVSLYWTFVTIATVGYGDYSPSTPLG 54


>gi|93140497|sp|P0C1A2.1|PELA_ERWCH(40-393:393) RecName:
           Full=Pectate lyase A; Flags: Precursor 
           gi|148449|gb|AAA24843.1| pectate lyase A, precursor (EC
           4.2.2.2)   gi|47168462|pdb|1OOC|A Chain A, Mutations In
           The T1.5 Loop Of Pectate Lyase A 
           gi|47168463|pdb|1OOC|B Chain B, Mutations In The T1.5
           Loop Of Pectate Lyase A   gi|47168541|pdb|1PE9|A Chain
           A, Mutations In The T1.5 Loop Of Pectate Lyase A 
           gi|47168542|pdb|1PE9|B Chain B, Mutations In The T1.5
           Loop Of Pectate Lyase A   gi|21730393|pdb|1JRG|A Chain
           A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
           Erwinia Chrysanthemi   gi|21730394|pdb|1JRG|B Chain B,
           Crystal Structure Of The R3 Form Of Pectate Lyase A,
           Erwinia Chrysanthemi   gi|21730403|pdb|1JTA|A Chain A,
           Crystal Structure Of Pectate Lyase A (C2 Form)  E=1e-123
           s/c=1.25 id=65% cov=97%
          Length = 350

 Score = 26.2 bits (57), Expect = 3.9
 Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 6/29 (20%)

Query: 21  HAGRRPRCRRKKVHHSTVVNPDSNLYFYW 49
              R PR R   +H     N   N++   
Sbjct: 227 VTERAPRVRYGSIH---SFN---NVFKGD 249


>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 103

 Score = 24.5 bits (53), Expect = 6.2
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 13/65 (20%)

Query: 178 WRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLT 237
           WR      +LL+     G +  +L  AE            G        Y  +++WS  T
Sbjct: 5   WRAAGAATVLLVIVLLAGSYLAVL--AER-----------GAPGAQLITYPRALWWSVET 51

Query: 238 LTTIG 242
            TT+G
Sbjct: 52  ATTVG 56


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 24.6 bits (53), Expect = 8.5
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 14/66 (21%)

Query: 178 WRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLT 237
               +L  + ++    F   Y L                          ++G+ ++S  T
Sbjct: 27  VFFASLAALFVVNNTLFALLYQLGDAPIANQSPP--------------GFVGAFFFSVET 72

Query: 238 LTTIGD 243
           L T+G 
Sbjct: 73  LATVGY 78


>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
           pernix [TaxId: 56636]}
          Length = 132

 Score = 24.5 bits (53), Expect = 8.5
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 120 HYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRV 161
                +  + +I +L+P  LL    G    L   R +++ R 
Sbjct: 64  PAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRF 105


>d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 152

 Score = 24.6 bits (53), Expect = 9.0
 Identities = 11/81 (13%), Positives = 17/81 (20%), Gaps = 12/81 (14%)

Query: 183 LVHILLIFAHWFGCFYYLLSQAEGFYG----DWVYPYRVGEFSTLT--------RKYLGS 230
           LV+              LL            D   P   G+                 G 
Sbjct: 62  LVYGGHTIGLALAQATRLLPNLATVLDWESCDHTAPVHEGDTLYSELHIESAQAHADGGV 121

Query: 231 IYWSTLTLTTIGDLPQPETDV 251
           +   +L         +P+  V
Sbjct: 122 LGLRSLVYAVSDSASEPDRQV 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.145    0.481 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,062,596
Number of extensions: 50548
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 15
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.0 bits)