Query psy16086
Match_columns 139
No_of_seqs 153 out of 1031
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:31:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0382|consensus 100.0 1.1E-48 2.4E-53 303.3 13.2 136 2-139 109-249 (262)
2 cd03126 alpha_CA_XII_XIV Carbo 100.0 7.7E-48 1.7E-52 297.6 13.8 135 2-139 94-237 (249)
3 cd03149 alpha_CA_VII Carbonic 100.0 6.7E-48 1.5E-52 295.9 12.9 134 2-139 82-224 (236)
4 cd03117 alpha_CA_IV_XV_like Ca 100.0 1.2E-47 2.5E-52 294.3 13.3 136 2-139 81-224 (234)
5 cd03150 alpha_CA_IX Carbonic a 100.0 8.2E-48 1.8E-52 297.1 12.4 136 2-139 94-234 (247)
6 cd03121 alpha_CARP_X_XI_like C 100.0 1.8E-47 3.8E-52 296.6 14.0 135 2-139 98-243 (256)
7 cd03125 alpha_CA_VI Carbonic a 100.0 2E-47 4.2E-52 295.3 14.0 136 2-139 95-236 (249)
8 cd03118 alpha_CA_V Carbonic an 100.0 2E-47 4.3E-52 293.3 13.2 134 2-139 82-224 (236)
9 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 2.6E-47 5.7E-52 294.5 13.8 136 2-139 95-236 (248)
10 cd03120 alpha_CARP_VIII Carbon 100.0 2.7E-47 5.9E-52 295.6 13.9 135 2-139 95-244 (256)
11 cd03119 alpha_CA_I_II_III_XIII 100.0 2.2E-47 4.8E-52 296.5 13.3 134 2-139 106-247 (259)
12 cd03122 alpha_CARP_receptor_li 100.0 4.1E-47 8.9E-52 294.2 13.7 136 2-139 98-243 (253)
13 PF00194 Carb_anhydrase: Eukar 100.0 4.9E-46 1.1E-50 288.4 14.0 135 1-139 101-244 (256)
14 cd00326 alpha_CA Carbonic anhy 100.0 7.2E-46 1.6E-50 283.2 13.2 135 2-139 80-218 (227)
15 cd03124 alpha_CA_prokaryotic_l 100.0 1.9E-41 4.2E-46 257.1 12.1 119 2-139 87-206 (216)
16 PLN02202 carbonate dehydratase 100.0 1.7E-41 3.6E-46 266.3 11.7 125 2-139 125-254 (284)
17 COG3338 Cah Carbonic anhydrase 100.0 3.4E-40 7.4E-45 247.3 10.4 119 1-138 119-237 (250)
18 PLN02179 carbonic anhydrase 100.0 1.3E-35 2.9E-40 227.4 10.5 99 2-117 132-230 (235)
19 PF09211 DUF1958: Domain of un 66.5 1.6 3.5E-05 27.1 -0.3 15 2-16 9-23 (65)
20 COG3955 Exopolysaccharide bios 51.0 25 0.00055 26.2 3.6 57 7-68 98-158 (211)
21 PHA02681 ORF089 virion membran 44.6 25 0.00055 22.9 2.5 20 116-135 51-70 (92)
22 PF07888 CALCOCO1: Calcium bin 43.9 13 0.00029 32.3 1.4 26 94-119 509-534 (546)
23 smart00190 IL4_13 Interleukins 41.3 6.8 0.00015 27.9 -0.6 23 99-121 46-68 (138)
24 PF14760 Rnk_N: Rnk N-terminus 36.2 55 0.0012 18.2 2.8 26 113-138 2-27 (42)
25 KOG3110|consensus 35.3 53 0.0012 23.5 3.1 46 6-60 79-126 (153)
26 cd01736 LSm14_N LSm14 (also kn 29.5 42 0.00091 21.3 1.7 15 99-113 53-67 (74)
27 PF03888 MucB_RseB: MucB/RseB 29.1 48 0.001 26.1 2.4 13 33-45 224-236 (285)
28 PF08153 NGP1NT: NGP1NT (NUC09 29.0 44 0.00096 23.6 1.9 20 111-130 38-57 (130)
29 PRK15276 putative fimbrial sub 28.0 29 0.00064 25.0 0.9 16 88-103 14-30 (153)
30 PF03452 Anp1: Anp1; InterPro 27.8 1E+02 0.0022 24.4 4.0 49 15-67 5-54 (269)
31 PF08942 DUF1919: Domain of un 27.1 26 0.00056 26.6 0.5 18 10-31 93-110 (201)
32 PF12162 STAT1_TAZ2bind: STAT1 24.3 82 0.0018 15.4 1.8 17 113-129 6-22 (23)
33 PF07780 Spb1_C: Spb1 C-termin 24.0 54 0.0012 25.1 1.7 26 111-138 87-112 (215)
34 KOG4577|consensus 23.8 55 0.0012 26.4 1.8 25 113-137 169-194 (383)
35 PF04688 Phage_holin: Phage ly 22.5 68 0.0015 18.4 1.6 16 112-127 2-17 (47)
36 PHA02771 hypothetical protein; 22.4 63 0.0014 21.3 1.6 18 109-126 24-41 (90)
37 PF11303 DUF3105: Protein of u 22.3 1.2E+02 0.0027 21.1 3.2 26 104-131 49-74 (130)
38 COG0117 RibD Pyrimidine deamin 22.2 28 0.0006 25.0 -0.1 31 95-127 82-120 (146)
39 PHA02902 putative IMV membrane 21.3 79 0.0017 19.6 1.8 17 116-132 53-69 (70)
40 PHA02772 hypothetical protein; 20.6 98 0.0021 20.6 2.2 17 109-125 24-40 (95)
No 1
>KOG0382|consensus
Probab=100.00 E-value=1.1e-48 Score=303.30 Aligned_cols=136 Identities=33% Similarity=0.558 Sum_probs=127.9
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCcc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLND 81 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~~ 81 (139)
||||||++|+||||+||+|.+|.+++||++.++|+|||||||+++.+.|++|+.|++.|+.|..+++.+.+ .+|+++.
T Consensus 109 EHti~g~~f~~ElHlVH~n~~y~~~~eA~~~p~GlAVv~vf~k~g~~~n~~l~~l~~~L~~I~~k~~~~~l--~~f~~~~ 186 (262)
T KOG0382|consen 109 EHTINGRRFPAELHLVHWNTKYENFKEALSKPDGLAVVGVFLKIGKEENPFLSKLTDALKRIKYKGQSTTL--PGFDPSE 186 (262)
T ss_pred ceecCCeecccEEEEEEeccccCCHHHHhcCCCcEEEEEEeecccCCCChhHHHHHHHhhccccCCccccc--CCCCHHH
Confidence 99999999999999999997799999999999999999999999666899999999999999999999999 6799999
Q ss_pred CCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcCC-----CCCCCCC
Q psy16086 82 ILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRRS-----PVEDRPE 139 (139)
Q Consensus 82 llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~~-----~~~~rp~ 139 (139)
|||....+||+|.||||||||+|+|+|+|+++|+.||.+||.+||.++.+. -+|.||.
T Consensus 187 llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p~~is~~Ql~~~r~l~~~~~~~~~~~N~Rp~ 249 (262)
T KOG0382|consen 187 LLPKSTRDYYTYEGSLTTPPCSESVTWTVFREPVTVSREQLEKFRNLLFDEEGEPLVNNFRPL 249 (262)
T ss_pred hcCccCCceEEEEeeccCCCCCCCEEEEEcCceeecCHHHHHHHHHHhhCcccccccccCCcC
Confidence 999976789999999999999999999999999999999999999999443 4788883
No 2
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=7.7e-48 Score=297.62 Aligned_cols=135 Identities=32% Similarity=0.542 Sum_probs=123.6
Q ss_pred CceecCccCceEEEEEEEeC-CCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCc
Q psy16086 2 PLLLFGFSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLN 80 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~-~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~ 80 (139)
||+|||++|||||||||++. +|.++++|.+.++|+|||||||++ ++.|+.++.|++.|+.+..+++...+ ..|++.
T Consensus 94 EH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~-g~~n~~~~~i~~~l~~i~~~~~~~~~--~~~~l~ 170 (249)
T cd03126 94 EHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEV-GPFNPSYEKIFSHLHEVKYKDQKVSV--PGFNVQ 170 (249)
T ss_pred eeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEe-cCCChhHHHHHHHhhhcccCCceeEc--CCCCHH
Confidence 99999999999999999998 599999999999999999999999 55799999999999999877777666 679999
Q ss_pred cCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcC--------CCCCCCCC
Q psy16086 81 DILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRR--------SPVEDRPE 139 (139)
Q Consensus 81 ~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~--------~~~~~rp~ 139 (139)
+|||.....||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. ...|+||.
T Consensus 171 ~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~~~~~~~~~~~~~~~~N~Rp~ 237 (249)
T cd03126 171 ELLPKRLDEYYRYEGSLTTPPCYPSVLWTVFRNPVQISQEQLLALETALYSTEEDESREMVNNYRQV 237 (249)
T ss_pred HhCccccCCeEEEeccCcCCCCcCceEEEEeCCceecCHHHHHHHHHHhhhcccCccCcccCCCCCC
Confidence 999985467999999999999999999999999999999999999998753 24899984
No 3
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=6.7e-48 Score=295.89 Aligned_cols=134 Identities=35% Similarity=0.473 Sum_probs=123.1
Q ss_pred CceecCccCceEEEEEEEeC-CCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCc
Q psy16086 2 PLLLFGFSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLN 80 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~-~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~ 80 (139)
||+|||++|||||||||++. +|.++++|+.+++|+|||||||++ ++.|+.++.|++.|+.+..+++...+ ..|++.
T Consensus 82 EH~idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~-g~~n~~l~~i~~~l~~i~~~~~~~~~--~~~~~~ 158 (236)
T cd03149 82 EHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLET-GDEHPGLNRLTDALYMVRFKGTKAQF--LDFNPK 158 (236)
T ss_pred ceeecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEEe-cCCCccHHHHHHHhhhcccCCcceee--ccCCHH
Confidence 99999999999999999998 599999999999999999999999 55699999999999999877777666 679999
Q ss_pred cCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcC--------CCCCCCCC
Q psy16086 81 DILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRR--------SPVEDRPE 139 (139)
Q Consensus 81 ~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~--------~~~~~rp~ 139 (139)
+|||. ...||+|.||||||||+|+|+|+||++|+.||.+|+++||++++. ...|+||.
T Consensus 159 ~llp~-~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~ 224 (236)
T cd03149 159 CLLPK-SLDYWTYPGSLTTPPLNESVTWIVLKEPIPVSEKQMGKFRELLFTSEEDQRNHMVNNFRPP 224 (236)
T ss_pred HHCCC-CCCeEEecccCcCCCCCCceEEEEeCceeeCCHHHHHHHHHhhhhccCcccccccCCCcCC
Confidence 99998 468999999999999999999999999999999999999999853 35899984
No 4
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=1.2e-47 Score=294.25 Aligned_cols=136 Identities=33% Similarity=0.488 Sum_probs=126.0
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCcc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLND 81 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~~ 81 (139)
||+|||++|||||||||++.+|.++++|++.++++||||+||+++...|+.++.|++.|+.|..+++...+ ..|++.+
T Consensus 81 EH~idg~~~~~E~HlVH~n~~~~~~~~A~~~~~~laVv~vl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~--~~~~~~~ 158 (234)
T cd03117 81 EHTIDGERYPMELHIVHIKESYNSLLEALKDSDGLAVLGFFIEEGEEENTNFDPLISALSNIPQKGGSTNL--TPFSLRS 158 (234)
T ss_pred cceeCCeecchheeeeEecCCCCCHHHHhcCCCceEEEEEEEEecCCCCccHHHHHHHHHhcccCCceeec--CCCCHHH
Confidence 99999999999999999999999999999999999999999999767899999999999999877777766 6799999
Q ss_pred CCCCCC-CccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcCC-------CCCCCCC
Q psy16086 82 ILPKKK-NLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRRS-------PVEDRPE 139 (139)
Q Consensus 82 llp~~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~~-------~~~~rp~ 139 (139)
|||... ..||+|.||||||||+|+|+|+||++|+.||.+||++||++++.. ..|+||.
T Consensus 159 llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~l~~N~Rp~ 224 (234)
T cd03117 159 LLPSVLLTKYYRYNGSLTTPGCNEAVIWTVFEEPIPISRAQLDAFSTVLFFDTDNGQPMVNNFRPV 224 (234)
T ss_pred HCCCcccCCeEEEeccccCCCCcccEEEEEeCCceecCHHHHHHHHHHhcccccCCCcccCCCCCC
Confidence 999853 589999999999999999999999999999999999999998754 5899984
No 5
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=8.2e-48 Score=297.13 Aligned_cols=136 Identities=26% Similarity=0.458 Sum_probs=124.5
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCcc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLND 81 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~~ 81 (139)
||+|||++|||||||||++.+|.+++||++.++|+||||+||+++...|+.++.|++.|+.+..+++...+ ..|++.+
T Consensus 94 EH~idg~~yp~E~HlVH~n~~y~~~~~A~~~~~glaVl~v~~~~g~~~n~~l~~i~~~l~~i~~~~~~~~~--~~~~l~~ 171 (247)
T cd03150 94 EHTVDGHRFPAEIHVVHLSTAFANLDEALGRPGGLAVLAAFLAEGLHENSAYEQLLSRLSEISEEESETVV--PGLDVSA 171 (247)
T ss_pred ceeeCCcccchhhheeeecccCCCHHHHhcCCCCcEEEEEEEEecCCCCHHHHHHHHHHHhhCCCCceeec--CCCCHHH
Confidence 89999999999999999999999999999999999999999999766899999999999999877776666 6799999
Q ss_pred CCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcC-----CCCCCCCC
Q psy16086 82 ILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRR-----SPVEDRPE 139 (139)
Q Consensus 82 llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~-----~~~~~rp~ 139 (139)
|||.+...||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. ...|+||.
T Consensus 172 llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~~l~~~~~~~l~~N~Rp~ 234 (247)
T cd03150 172 LLPSDLSRYFRYEGSLTTPPCAQGVIWTVFNQTVRLSAKQLHTLSDSLWGPHDSRLQLNFRAT 234 (247)
T ss_pred HcCcccCCEEEEeeeccCCCCCCceEEEEeCceeecCHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 99985467999999999999999999999999999999999999997743 25799984
No 6
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=1.8e-47 Score=296.64 Aligned_cols=135 Identities=27% Similarity=0.517 Sum_probs=124.4
Q ss_pred CceecCccCceEEEEEEEeC-CCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCC--CCcCCCCceEEeecCCC
Q psy16086 2 PLLLFGFSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLP--NVTWPNDNFTAVHVPGN 78 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~-~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~--~i~~~~~~~~~~~~~~~ 78 (139)
||+|||++|||||||||++. +|.+++||.+.++|+|||||||+++...|+.++.|++.++ .+..+++...+ ..|+
T Consensus 98 EH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~~g~~~n~~l~~i~~~l~~~~i~~~~~~~~~--~~~~ 175 (256)
T cd03121 98 EHTVNGQAFPGEVQLIHYNSELYPNFSEASKSPNGLVIVSLFVKIGETSNPELRRLTNRDTITSIRYKGDAYFL--QDLS 175 (256)
T ss_pred ceeeCCcccCceEEEEEEcccccCCHHHHhcCCCCeEEEEEEEeecccCCHHHHHHHHhccccccccCCceeec--CCCC
Confidence 99999999999999999999 5999999999999999999999996667999999999999 88877877766 6799
Q ss_pred CccCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcC--------CCCCCCCC
Q psy16086 79 LNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRR--------SPVEDRPE 139 (139)
Q Consensus 79 l~~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~--------~~~~~rp~ 139 (139)
+.+|||. ...||+|.||||||||+|+|+|+||++|+.||.+||++||+++++ ...|+||.
T Consensus 176 l~~Llp~-~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~ 243 (256)
T cd03121 176 IELLLPE-TDHYITYEGSLTSPGCHETVTWIILNKPIYITKEQMHSLRLLSQNSPSQEKAPMSPNFRPV 243 (256)
T ss_pred HHHHCCC-CCceEEeeccccCCCCCcceEEEEeCccEecCHHHHHHHHHHhhccCCcccCcCCCCCCCC
Confidence 9999998 578999999999999999999999999999999999999999863 35799984
No 7
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=2e-47 Score=295.34 Aligned_cols=136 Identities=33% Similarity=0.595 Sum_probs=124.1
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCC-CCCchhHHHHHhCCCCcCCCCceEEeecCCCCc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSH-KANPTFQGIVASLPNVTWPNDNFTAVHVPGNLN 80 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~-~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~ 80 (139)
||+|||++|||||||||++.+|.++++|++.++|+|||||||+++. ..|+.++.|++.|+.+..+++...+ ..|++.
T Consensus 95 EH~idG~~yp~E~HlVH~n~~y~~~~~a~~~~~glaVl~v~~~~~~~~~n~~~~~i~~~l~~i~~~~~~~~~--~~~~~~ 172 (249)
T cd03125 95 EHTIDGMRYVAELHIVHYNSKYKSYEEAKDKPDGLAVLAFLYKVGHYAENTYYSDFISKLAKIKYAGQTTTL--TSLDVR 172 (249)
T ss_pred cceeccccCCceEEEEEecCCCCCHHHHhcCCCceEEEEEEEEeccCcCCccHHHHHHHHhhcccCCceeec--CCCCHH
Confidence 9999999999999999999999999999999999999999999964 3899999999999999877877776 689999
Q ss_pred cCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcCC-----CCCCCCC
Q psy16086 81 DILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRRS-----PVEDRPE 139 (139)
Q Consensus 81 ~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~~-----~~~~rp~ 139 (139)
+|||.+..+||+|.||||||||+|+|.|+||++|+.||.+||++||+++.+. ..|+||.
T Consensus 173 ~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~~~~~~~~~~l~~N~Rp~ 236 (249)
T cd03125 173 DMLPENLHHYYTYQGSLTTPPCTENVLWFVFDDPVTLSKTQIVKLENTLMDHHNKTIRNDYRRT 236 (249)
T ss_pred HhCCcCcCCeEEEeccCcCCCCCCceEEEEeCCceecCHHHHHHHHHHhcccCCCcccCCCCCC
Confidence 9999854679999999999999999999999999999999999999876442 4689984
No 8
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=2e-47 Score=293.28 Aligned_cols=134 Identities=34% Similarity=0.464 Sum_probs=122.7
Q ss_pred CceecCccCceEEEEEEEeC-CCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCc
Q psy16086 2 PLLLFGFSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLN 80 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~-~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~ 80 (139)
||+|||++|||||||||++. +|.++++|+..++++|||||||++ ++.|+.++.|++.|+.+..+++...+ ..|++.
T Consensus 82 EH~idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~-g~~n~~l~~i~~~l~~i~~~~~~~~~--~~~~~~ 158 (236)
T cd03118 82 EHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLKL-GAHHEGLQKLVDALPEVRHKDTVVEF--NPFDPS 158 (236)
T ss_pred ceEECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEEe-cCcCccHHHHHHHHHhcCcCCceeee--cCCCHH
Confidence 99999999999999999998 599999999999999999999999 55689999999999999877776666 679999
Q ss_pred cCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcC--------CCCCCCCC
Q psy16086 81 DILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRR--------SPVEDRPE 139 (139)
Q Consensus 81 ~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~--------~~~~~rp~ 139 (139)
+|||. ...||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. ...|+||.
T Consensus 159 ~llp~-~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~ 224 (236)
T cd03118 159 CLLPA-CRDYWTYPGSLTTPPLTESVTWIIQKQPIEVSPSQLSVFRTLLFTSRGEEEKVMVNNFRPL 224 (236)
T ss_pred HHccc-CCCEEEecCcccCCCCcCceEEEEeCccccCCHHHHHHHHHHhhhccCCccccccCCCCCC
Confidence 99998 478999999999999999999999999999999999999999853 34799984
No 9
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=2.6e-47 Score=294.48 Aligned_cols=136 Identities=34% Similarity=0.543 Sum_probs=124.3
Q ss_pred CceecCccCceEEEEEEEeC-CCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCc
Q psy16086 2 PLLLFGFSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLN 80 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~-~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~ 80 (139)
||+|||++|||||||||++. +|.++++|++.++++||||+||++++..|+.++.|++.|+.+..+++...+ ..|++.
T Consensus 95 EH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~~~~n~~~~~i~~~l~~i~~~~~~~~~--~~~~l~ 172 (248)
T cd03123 95 EHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVGYPENTYYEKIISHLHEIKYKGQETTV--PGFNVR 172 (248)
T ss_pred cceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCCCCccHHHHHHHHHhhCcCCcEEec--CCCCHH
Confidence 99999999999999999999 599999999999999999999999657899999999999999888877766 679999
Q ss_pred cCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcC-----CCCCCCCC
Q psy16086 81 DILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRR-----SPVEDRPE 139 (139)
Q Consensus 81 ~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~-----~~~~~rp~ 139 (139)
+|||.....||+|.||||||||+|+|+|+||++|+.||++||++||+++.. ...|+||.
T Consensus 173 ~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~iS~~Ql~~fr~~l~~~~~~~~~~N~Rp~ 236 (248)
T cd03123 173 ELLPEDLSHYYRYEGSLTTPPCYESVLWTVFRDPVTLSKEQLETLENTLMDTHNKTLQNNYRAT 236 (248)
T ss_pred HhcCCCcCCeEEEeccCcCCCCcCcEEEEEeCCceecCHHHHHHHHHHhhccCCCcccCCCCCC
Confidence 999985457999999999999999999999999999999999999987643 35899984
No 10
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=2.7e-47 Score=295.59 Aligned_cols=135 Identities=33% Similarity=0.522 Sum_probs=123.7
Q ss_pred CceecCccCceEEEEEEEeCC-CCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLN 80 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~-y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~ 80 (139)
||+|||++|||||||||++.+ |.++++|++.++|+||||+||++ ++.|+.++.|++.|+.+..+++...+ ..|++.
T Consensus 95 EH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~-g~~n~~l~~i~~~l~~i~~~~~~~~~--~~~~~~ 171 (256)
T cd03120 95 EHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQI-GKEHVGLKAVTEILQDIQYKGKSKTI--PCFNPN 171 (256)
T ss_pred ceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEee-cCCCHhHHHHHHHhHhhccCCceeee--cCCCHH
Confidence 999999999999999999995 99999999999999999999999 55789999999999999887876666 679999
Q ss_pred cCCCCC-CCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcC-------------CCCCCCCC
Q psy16086 81 DILPKK-KNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRR-------------SPVEDRPE 139 (139)
Q Consensus 81 ~llp~~-~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~-------------~~~~~rp~ 139 (139)
+|||.. ...||+|.||||||||+|+|+|+||++|+.||.+||++||++++. ...|+||.
T Consensus 172 ~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~l~~~~~~~~~~~~~~~~l~~N~Rp~ 244 (256)
T cd03120 172 TLLPDPLLRDYWVYEGSLTTPPCSEGVTWILFRYPLTISQSQIEEFRRLRTHVKGAELVEGCDGLLGDNFRPT 244 (256)
T ss_pred HHCCCcCcCCeEEEeeecCCCCCCCCeEEEEeCCeeecCHHHHHHHHHHHhccccccccccccccccCCCCCC
Confidence 999974 367999999999999999999999999999999999999999863 25899984
No 11
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=2.2e-47 Score=296.51 Aligned_cols=134 Identities=35% Similarity=0.483 Sum_probs=123.9
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCcc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLND 81 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~~ 81 (139)
||+|||++|||||||||++.+|.++++|+.+++++|||||||++ ++.|++++.|++.|+.+..+++...+ ..|++.+
T Consensus 106 EH~idg~~~p~E~HlVH~n~~y~~~~~A~~~~~glaVvgvl~~~-g~~n~~l~~i~~~l~~i~~~~~~~~~--~~~~l~~ 182 (259)
T cd03119 106 EHTVDGVKYAAELHLVHWNSKYGSFGEAAKQPDGLAVVGVFLKV-GEANPELQKVLDALDSIKTKGKQAPF--TNFDPSC 182 (259)
T ss_pred cceecCccccceEEEEEecccCCCHHHHhcCCCCeEEEEEEEEe-cccchhHHHHHHHHHHhccCCceeee--cCCCHHH
Confidence 89999999999999999999999999999999999999999999 55899999999999999887776666 6799999
Q ss_pred CCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcCC--------CCCCCCC
Q psy16086 82 ILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRRS--------PVEDRPE 139 (139)
Q Consensus 82 llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~~--------~~~~rp~ 139 (139)
|||. ...||+|.||||||||+|+|+|+||++|+.||.+||++||++++.. ..|+||.
T Consensus 183 llp~-~~~yy~Y~GSLTTPpC~E~V~W~V~~~~i~is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~ 247 (259)
T cd03119 183 LLPA-SLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMAKFRSLLFNAEGEPPCPMVDNWRPP 247 (259)
T ss_pred HcCC-CCCeEEeccccCCCCCCCceEEEEeCCeeeCCHHHHHHHHHHhhccCCCccccccCCCCCC
Confidence 9998 4689999999999999999999999999999999999999998642 4799984
No 12
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=4.1e-47 Score=294.16 Aligned_cols=136 Identities=37% Similarity=0.634 Sum_probs=125.6
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCcc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLND 81 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~~ 81 (139)
||+|||++|||||||||++.+|.+..||++.++++||||+||+++.++|++++.|++.|+.+..+++...+ ..|++.+
T Consensus 98 EH~idg~~yp~E~H~VH~n~~~~~~~~A~~~~~~laVv~vl~~~g~~~n~~l~~i~~~l~~i~~~~~~~~~--~~~~l~~ 175 (253)
T cd03122 98 EHSIDGHKFPLEMQILHRNTDFFDSFEAIKSPGGVLALAYLFELSHEDNPFLDPIIEGLRNVSRPGKEVEL--PPFPLSD 175 (253)
T ss_pred ceeecCccCcceEEEEEEcCCCCCHHHHhhcCCCeEEEEEEEEEecCCCHhHHHHHHHHHhcCCCCcEEEc--CCCCHHH
Confidence 99999999999999999999988888999999999999999999768899999999999999888877766 6799999
Q ss_pred CCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcCC----------CCCCCCC
Q psy16086 82 ILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRRS----------PVEDRPE 139 (139)
Q Consensus 82 llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~~----------~~~~rp~ 139 (139)
|||.+...||+|.||||||||+|+|+|+||++|+.||.+||++||++++.. ..|+||.
T Consensus 176 llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~~~N~Rp~ 243 (253)
T cd03122 176 LLPPFTDKYYSYEGSLTTPPCSETVEWIVFREPVPISSRQLEAFRELLTRRQDGVMSGDYLPNNGRPQ 243 (253)
T ss_pred HhccccCCeEEEeeeccCCCCcCceEEEEeCceeecCHHHHHHHHHHhcccccccccCccccCCCcCC
Confidence 999855679999999999999999999999999999999999999998754 4799984
No 13
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=4.9e-46 Score=288.37 Aligned_cols=135 Identities=41% Similarity=0.673 Sum_probs=119.2
Q ss_pred CCceecCccCceEEEEEEEe-CCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCC
Q psy16086 1 MPLLLFGFSYPMELHMVFYN-KDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNL 79 (139)
Q Consensus 1 ~~Htidg~~~~~E~H~Vh~~-~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l 79 (139)
.||+|||++|||||||||++ .+|.++++|.+.++++||||+|++++ +.|+.++.|++.|+.+..+++.+.+ ..|++
T Consensus 101 SEH~idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~~~-~~n~~l~~i~~~l~~i~~~~~~~~~--~~~~l 177 (256)
T PF00194_consen 101 SEHTIDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFEIG-ESNPFLQPILDALPNIPYPGSSTPI--QSFSL 177 (256)
T ss_dssp SSSEETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEEES-S--GHHHHHHHHGGGGTSTTEEEEE--ESBBG
T ss_pred cccchhhhhcccceeeeeeccccccchhhhhhccccceEEEEEeecc-ccccccchhhhhhhhcccccccccc--ccccc
Confidence 39999999999999999999 57999999999999999999999995 8899999999999999888888888 78999
Q ss_pred ccCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcCC--------CCCCCCC
Q psy16086 80 NDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRRS--------PVEDRPE 139 (139)
Q Consensus 80 ~~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~~--------~~~~rp~ 139 (139)
++|||. ...||+|.||||||||+|+|.|+||++|+.||.+||++||+++... ..|.||.
T Consensus 178 ~~llp~-~~~yy~Y~GSLTtPpCtE~V~W~V~~~pi~is~~Ql~~f~~~~~~~~~~~~~~~~~N~Rp~ 244 (256)
T PF00194_consen 178 SDLLPS-TRSYYRYNGSLTTPPCTEGVTWIVFKEPIPISQDQLNKFRKLLGNNNGEEFAPLVNNFRPV 244 (256)
T ss_dssp GGGSCS-SSSEEEEEEE-SSTTSSSEEEEEEESSEEEEEHHHHHHHHTSBSSCTTSSECBSSS-S---
T ss_pred cccCCC-CCCEEEEcccccCCCcceeEEEEEeeeEEEEeHHHHHHHHHHhhcccCCccccCCCCcCCC
Confidence 999999 7899999999999999999999999999999999999999998654 3688984
No 14
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=7.2e-46 Score=283.16 Aligned_cols=135 Identities=46% Similarity=0.705 Sum_probs=125.2
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCcc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLND 81 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~~ 81 (139)
||+|||++|||||||||++.+|.+. ||.+.++++||||+||+++++.|++++.+++.+..+..+++...+ ..+++.+
T Consensus 80 EH~i~g~~y~~E~H~Vh~~~~~~~~-~a~~~~~~laVv~v~~~~~~~~n~~l~~i~~~l~~~~~~~~~~~~--~~~~l~~ 156 (227)
T cd00326 80 EHTIDGKRYPLELHLVHYNSDYYSS-EAAKKPGGLAVLGVFFEVGEKENPFLKKILDALPKIKYKGKETTL--PPFDLSD 156 (227)
T ss_pred cceeCCEeccccceEEEECCCCCCh-hhhccCCCeEEEEEEEEecccCChhHHHHHHHHHhcCcCCcEeec--CCCCHHH
Confidence 9999999999999999999998888 999999999999999999768899999999999999888888777 7899999
Q ss_pred CCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcC----CCCCCCCC
Q psy16086 82 ILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRR----SPVEDRPE 139 (139)
Q Consensus 82 llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~----~~~~~rp~ 139 (139)
|||....+||+|.||||||||+|+|.|+|+++|+.||++|++.||+++.. ...|+||.
T Consensus 157 llp~~~~~y~~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~f~~l~~~~~~~~~~N~Rp~ 218 (227)
T cd00326 157 LLPSSLRDYYTYEGSLTTPPCSEGVTWIVFKEPITISKEQLEAFRSLLDREGKPLVNNYRPV 218 (227)
T ss_pred HCCCCcCCEEEEeccCcCCCCccceEEEEeCCceecCHHHHHHHHHHHhcCCCcccCCCCCC
Confidence 99984478999999999999999999999999999999999999999854 57788983
No 15
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=1.9e-41 Score=257.08 Aligned_cols=119 Identities=39% Similarity=0.652 Sum_probs=106.2
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCC-CCc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPG-NLN 80 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~-~l~ 80 (139)
||+|||++|||||||||++. ++++||||+||+++ +.|++++.+++.++.+. ++...+ ..+ ++.
T Consensus 87 EH~idg~~y~~ElH~Vh~~~-----------~~~laVl~v~~~~~-~~n~~l~~i~~~l~~~~--~~~~~~--~~~~~~~ 150 (216)
T cd03124 87 EHLINGKRYPLEAHLVHKSK-----------DGQLAVVAVLFEEG-KENPFLKKILDNMPKKE--GTEVNL--PAILDPN 150 (216)
T ss_pred ccEeccccCCceeeEEEEcC-----------CCCEEEEEEEEeec-CCCHHHHHHHHhhhhhc--CCceec--cCCCCHH
Confidence 99999999999999999986 68999999999994 78999999999988764 444555 566 999
Q ss_pred cCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcCCCCCCCCC
Q psy16086 81 DILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRRSPVEDRPE 139 (139)
Q Consensus 81 ~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~~~~~~rp~ 139 (139)
+|+|. ...||+|.||||||||+|+|+|+||++|+.||++|+++||+++ ...|+||.
T Consensus 151 ~llp~-~~~y~~Y~GSLTtPpC~E~V~W~V~~~~~~is~~Ql~~f~~~~--~~~N~Rp~ 206 (216)
T cd03124 151 ELLPE-SRSYYRYEGSLTTPPCSEGVRWIVLKQPITISKEQLAKFRAAV--YPNNARPV 206 (216)
T ss_pred Hhccc-CCceEEEeeecCCCCCcCceEEEecCCccccCHHHHHHHHHhc--cCCCCCCC
Confidence 99998 4789999999999999999999999999999999999999986 35688884
No 16
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=1.7e-41 Score=266.33 Aligned_cols=125 Identities=30% Similarity=0.394 Sum_probs=106.2
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCC---CCce-EEeecCC
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP---NDNF-TAVHVPG 77 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~---~~~~-~~~~~~~ 77 (139)
||+|||++|||||||||++. ++++||||+||++ ++.|++++.+++.++.+..+ ++.. ......+
T Consensus 125 EH~idG~~yp~E~H~VH~~~-----------~g~laVlgv~~~~-g~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~~~~ 192 (284)
T PLN02202 125 EHHLHGVQYAAELHMVHQAK-----------DGSFAVVASLFKI-GTEEPFLSQMKDKLVKLKEERFKGNHTAQVEVGKI 192 (284)
T ss_pred ccEECCeeCCeEEEEEEEcC-----------CCCEEEEEEEEec-cCCChHHHHHHHHHHHhhcccccCccccccccccc
Confidence 99999999999999999986 6889999999999 55789999999888876432 2211 1111468
Q ss_pred CCccCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhc-CCCCCCCCC
Q psy16086 78 NLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDR-RSPVEDRPE 139 (139)
Q Consensus 78 ~l~~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~-~~~~~~rp~ 139 (139)
++..|+|. ..+||+|.||||||||+|+|+|+||++|+.||.+||++||++++ ....|+||.
T Consensus 193 ~~~~llp~-~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~~~~~~l~~N~Rpv 254 (284)
T PLN02202 193 DTRHIERK-TRKYFRYIGSLTTPPCSENVSWTILGKVRSMSKEQVELLRSPLDKSFKNNSRPC 254 (284)
T ss_pred CHHHhCcc-ccceEEEeccccCCCCCCceEEEEeCceEEcCHHHHHHHHHhhhcccCCCCCCC
Confidence 89999997 57899999999999999999999999999999999999999885 357899984
No 17
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-40 Score=247.30 Aligned_cols=119 Identities=40% Similarity=0.594 Sum_probs=107.3
Q ss_pred CCceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCc
Q psy16086 1 MPLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLN 80 (139)
Q Consensus 1 ~~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~ 80 (139)
+||.|||+.||||.||||.+. ++.|+|+|+|++. +..|+.|..|.+.+++. +|....+. ..+|++
T Consensus 119 sEhlv~Gk~~pmEaHFVHkd~-----------~g~L~Vl~v~~~~-g~eN~~l~~l~~~fP~~--~ge~~~l~-~~id~~ 183 (250)
T COG3338 119 SEHLVDGKSFPMEAHFVHKDA-----------KGTLAVLAVLLQA-GAENPELAPLWEGFPQK--PGEEETLD-ETIDLN 183 (250)
T ss_pred hHHhhccccccceeeeeecCC-----------CCCEEEEEEeeec-CCCCcchhHHHHhcccc--ccccccee-eccChh
Confidence 699999999999999999887 6889999999999 88999999999999875 34444453 569999
Q ss_pred cCCCCCCCccEEEeecCCCCCCcceEEEEEeCCceecCHHHHHHHHHhhcCCCCCCCC
Q psy16086 81 DILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDRARDRRSPVEDRP 138 (139)
Q Consensus 81 ~llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~is~~Ql~~fr~l~~~~~~~~rp 138 (139)
.|||. ...||+|+||||||||+|+|.|+|+++|+.+|++|+++|.+++. .|+||
T Consensus 184 ~~lP~-s~~yyty~GSLTTPPCsEgV~W~Vl~ep~evs~~qi~~f~~~~~---~N~RP 237 (250)
T COG3338 184 AFLPE-SRNYYTYNGSLTTPPCSEGVTWIVLKEPIEVSQEQIAEFSKLMG---HNARP 237 (250)
T ss_pred HhCcc-ccceEEecccccCCCcccCceEEEEcCcccCCHHHHHHHHHHhC---CCCCC
Confidence 99999 68999999999999999999999999999999999999999887 47777
No 18
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=1.3e-35 Score=227.44 Aligned_cols=99 Identities=25% Similarity=0.431 Sum_probs=86.7
Q ss_pred CceecCccCceEEEEEEEeCCCCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCCceEEeecCCCCcc
Q psy16086 2 PLLLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVHVPGNLND 81 (139)
Q Consensus 2 ~Htidg~~~~~E~H~Vh~~~~y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~l~~ 81 (139)
||+|||++|||||||||++. .+++||||+||++ ++.|++++.+++.++.+.. +...+ ..+++.+
T Consensus 132 EH~InG~~yp~E~H~VH~n~-----------~g~laVlgvl~~~-g~~n~~l~~il~~l~~~~~--~~~~~--~~l~~~~ 195 (235)
T PLN02179 132 EHTINGTSYDLELHMVHTSA-----------SGKTAVVGVLYKL-GEPDEFLTKLLNGIKGVGK--KEINL--GIVDPRD 195 (235)
T ss_pred ceEecccccCeeEEEEEEcC-----------CCCeEEEEEEEec-CCCCHHHHHHHHhhhcccC--cceee--cccCHHH
Confidence 99999999999999999986 5789999999999 5678999999999887642 33334 5688899
Q ss_pred CCCCCCCccEEEeecCCCCCCcceEEEEEeCCceec
Q psy16086 82 ILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILL 117 (139)
Q Consensus 82 llp~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~i 117 (139)
|+|. ..+||+|.||||||||+|+|+|+|+++|+-+
T Consensus 196 llp~-~~~yy~Y~GSLTTPPC~E~V~WiV~~~p~~~ 230 (235)
T PLN02179 196 IRFE-TNNFYRYIGSLTIPPCTEGVIWTVVKRVVWF 230 (235)
T ss_pred hCcC-CCCEEEEecccCCCCCCCceEEEEecCcEEe
Confidence 9997 5789999999999999999999999999854
No 19
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=66.54 E-value=1.6 Score=27.08 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=11.7
Q ss_pred CceecCccCceEEEE
Q psy16086 2 PLLLFGFSYPMELHM 16 (139)
Q Consensus 2 ~Htidg~~~~~E~H~ 16 (139)
||+|||+.|-++=-|
T Consensus 9 ~h~IdGk~y~v~kDl 23 (65)
T PF09211_consen 9 EHTIDGKKYYVKKDL 23 (65)
T ss_dssp EEEETTEEEEESS-E
T ss_pred cEEECCEEEEecCCh
Confidence 799999999887333
No 20
>COG3955 Exopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=51.02 E-value=25 Score=26.23 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=32.8
Q ss_pred CccCceEEEEEEEeCCCCChhhhhcC----CCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCCC
Q psy16086 7 GFSYPMELHMVFYNKDYDSSDRAQGY----KDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPND 68 (139)
Q Consensus 7 g~~~~~E~H~Vh~~~~y~~~~ea~~~----~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~~ 68 (139)
|+--+.++|+-| |++++||..+ ...+--=-.|++...+++. -+.++..+.++.++.+
T Consensus 98 G~LgDi~ihF~H----y~S~eEAk~kWe~RkkRin~~NLfikm~~kd~v-~Ek~v~~fDnLPykNK 158 (211)
T COG3955 98 GSLGDIIIHFNH----YASFEEAKNKWELRKKRINLKNLFIKMTDKDGV-NEKLVKRFDNLPYKNK 158 (211)
T ss_pred CccccEEEeecc----hhhHHHHHhHHHHHHhhccccceEEEEecCCCc-cHHHHHHhhcCCccce
Confidence 455578999999 5678999643 2333333445666444332 2455555555555544
No 21
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=44.58 E-value=25 Score=22.89 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=17.4
Q ss_pred ecCHHHHHHHHHhhcCCCCC
Q psy16086 116 LLSHEQEMEDRARDRRSPVE 135 (139)
Q Consensus 116 ~is~~Ql~~fr~l~~~~~~~ 135 (139)
.++++|+.+|.++..++|..
T Consensus 51 ~lTpDQVrAlHRlvTsSpe~ 70 (92)
T PHA02681 51 KMTDDQVRAFHALVTSSPED 70 (92)
T ss_pred cCCHHHHHHHHHHHhCCCCC
Confidence 58899999999999988743
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=43.94 E-value=13 Score=32.25 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.9
Q ss_pred eecCCCCCCcceEEEEEeCCceecCH
Q psy16086 94 KGSLTTPPCSEVVTWIDFKNPILLSH 119 (139)
Q Consensus 94 ~GSLTtPpC~E~V~WiV~~~p~~is~ 119 (139)
.++.++|||.....|+|+.+|.+|+.
T Consensus 509 ~~~~~~p~~p~~~~~vvi~qp~p~~~ 534 (546)
T PF07888_consen 509 GQPGSLPPSPREPERVVISQPAPISS 534 (546)
T ss_pred CCCCCCCCCCCccccceeCCCCCCCC
Confidence 46778899999999999999999986
No 23
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=41.26 E-value=6.8 Score=27.90 Aligned_cols=23 Identities=13% Similarity=0.106 Sum_probs=21.2
Q ss_pred CCCCcceEEEEEeCCceecCHHH
Q psy16086 99 TPPCSEVVTWIDFKNPILLSHEQ 121 (139)
Q Consensus 99 tPpC~E~V~WiV~~~p~~is~~Q 121 (139)
+|||.|...|=||..|-..+...
T Consensus 46 ~~~C~e~~V~dV~~~~kNtTe~e 68 (138)
T smart00190 46 TNLCTEMMVPDVLAATKNTTEKE 68 (138)
T ss_pred CCCcccccHHHHhcccCCCcchh
Confidence 78999999999999999888877
No 24
>PF14760 Rnk_N: Rnk N-terminus; PDB: 2PN0_D 3BMB_B.
Probab=36.23 E-value=55 Score=18.16 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=18.3
Q ss_pred CceecCHHHHHHHHHhhcCCCCCCCC
Q psy16086 113 NPILLSHEQEMEDRARDRRSPVEDRP 138 (139)
Q Consensus 113 ~p~~is~~Ql~~fr~l~~~~~~~~rp 138 (139)
-+|.||...++.+.+++.+.+..+.|
T Consensus 2 P~I~Is~~D~~RL~~Ll~~~~~~~~~ 27 (42)
T PF14760_consen 2 PPIYISELDLERLEALLEALSDRDPP 27 (42)
T ss_dssp ---EEEHHHHHHHHHHHCCCCCTTSC
T ss_pred CCEEECHhhHHHHHHHHhCccccCCH
Confidence 46899999999999999866544433
No 25
>KOG3110|consensus
Probab=35.35 E-value=53 Score=23.48 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=26.8
Q ss_pred cCccCceEEEEEEEeCC--CCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhC
Q psy16086 6 FGFSYPMELHMVFYNKD--YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASL 60 (139)
Q Consensus 6 dg~~~~~E~H~Vh~~~~--y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l 60 (139)
+++.-.||.|++|.-.+ |. + .=.++|||++-.. .+=..++.+++.+
T Consensus 79 ~N~~Kt~E~hlih~f~~DFYg----e---~l~~~IvGyiRpe--~nf~slesLi~~I 126 (153)
T KOG3110|consen 79 KNKKKTMELHLIHDFGEDFYG----E---TLKVIIVGYIRPE--LNFDSLESLIEAI 126 (153)
T ss_pred CCcccceeeeeehhcccchhh----h---eeeEEEEEeeccc--cCcchHHHHHHHH
Confidence 45667899999996653 31 1 2346677665322 2224567776654
No 26
>cd01736 LSm14_N LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles.
Probab=29.47 E-value=42 Score=21.33 Aligned_cols=15 Identities=40% Similarity=0.809 Sum_probs=12.9
Q ss_pred CCCCcceEEEEEeCC
Q psy16086 99 TPPCSEVVTWIDFKN 113 (139)
Q Consensus 99 tPpC~E~V~WiV~~~ 113 (139)
.|||++.-.||||+-
T Consensus 53 ipp~~~vyd~IvFrg 67 (74)
T cd01736 53 IPPSDEVYDYIVFRG 67 (74)
T ss_pred cCCCCcceeEEEEcC
Confidence 588999999999974
No 27
>PF03888 MucB_RseB: MucB/RseB family; InterPro: IPR005588 The members of this family are regulators of the anti-sigma E protein RseD.; PDB: 2P4B_B 2V42_B 2V43_A 3M4W_A.
Probab=29.11 E-value=48 Score=26.15 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=10.0
Q ss_pred CCceEEEEEEEEe
Q psy16086 33 KDGLVVLASFFEV 45 (139)
Q Consensus 33 ~~~l~Vlavl~~~ 45 (139)
.|||+.++||++-
T Consensus 224 SDGLasvSVfIe~ 236 (285)
T PF03888_consen 224 SDGLASVSVFIEP 236 (285)
T ss_dssp ESSS-EEEEEE-E
T ss_pred cCCceEEEEEEEc
Confidence 6899999999975
No 28
>PF08153 NGP1NT: NGP1NT (NUC091) domain; InterPro: IPR012971 This N-terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [].
Probab=29.01 E-value=44 Score=23.56 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.5
Q ss_pred eCCceecCHHHHHHHHHhhc
Q psy16086 111 FKNPILLSHEQEMEDRARDR 130 (139)
Q Consensus 111 ~~~p~~is~~Ql~~fr~l~~ 130 (139)
|.....||+++|+.||+-++
T Consensus 38 FgNTRvI~Q~~L~~FReem~ 57 (130)
T PF08153_consen 38 FGNTRVISQEALEKFREEMG 57 (130)
T ss_pred hcCceEECHHHHHHHHHHHH
Confidence 34667789999999998874
No 29
>PRK15276 putative fimbrial subunit SteE; Provisional
Probab=28.00 E-value=29 Score=25.00 Aligned_cols=16 Identities=38% Similarity=0.901 Sum_probs=13.4
Q ss_pred CccEEEeecCCCCC-Cc
Q psy16086 88 NLYFTYKGSLTTPP-CS 103 (139)
Q Consensus 88 ~~yy~Y~GSLTtPp-C~ 103 (139)
..-.++.|+++.|| |+
T Consensus 14 ~~~v~~~G~l~~pp~C~ 30 (153)
T PRK15276 14 ADNLTFHGKLINPPACT 30 (153)
T ss_pred ceEEEEEEEEEcCCCCE
Confidence 45678999999997 96
No 30
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=27.80 E-value=1e+02 Score=24.39 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=29.5
Q ss_pred EEEEEeCC-CCChhhhhcCCCceEEEEEEEEeCCCCCchhHHHHHhCCCCcCCC
Q psy16086 15 HMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPN 67 (139)
Q Consensus 15 H~Vh~~~~-y~~~~ea~~~~~~l~Vlavl~~~~~~~n~~l~~i~~~l~~i~~~~ 67 (139)
|++|++-. ..+-..+......++||..+ .....++...++.|.++.++.
T Consensus 5 ~~~~~~ln~~~~~~~~~~~~e~VLILtpl----rna~~~l~~y~~~L~~L~YP~ 54 (269)
T PF03452_consen 5 HIVHYDLNKLTSTSDAARNKESVLILTPL----RNAASFLPDYFDNLLSLTYPH 54 (269)
T ss_pred ceEEEECCcccCCCcccccCCeEEEEEec----CCchHHHHHHHHHHHhCCCCc
Confidence 56666654 45555666667788888777 333445555555555555443
No 31
>PF08942 DUF1919: Domain of unknown function (DUF1919); InterPro: IPR015037 This protein has no known function. It is found in various hypothetical and putative bacterial proteins. ; PDB: 2G6T_B.
Probab=27.06 E-value=26 Score=26.56 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=13.1
Q ss_pred CceEEEEEEEeCCCCChhhhhc
Q psy16086 10 YPMELHMVFYNKDYDSSDRAQG 31 (139)
Q Consensus 10 ~~~E~H~Vh~~~~y~~~~ea~~ 31 (139)
-+.|+|++| |.+++||..
T Consensus 93 ~dIeihF~H----Y~s~~eA~~ 110 (201)
T PF08942_consen 93 GDIEIHFMH----YKSFEEAKE 110 (201)
T ss_dssp C-EEEEESS-----SSHHHHHH
T ss_pred CCEEEEEEe----cCCHHHHHH
Confidence 468999999 557889864
No 32
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=24.35 E-value=82 Score=15.40 Aligned_cols=17 Identities=18% Similarity=-0.033 Sum_probs=10.3
Q ss_pred CceecCHHHHHHHHHhh
Q psy16086 113 NPILLSHEQEMEDRARD 129 (139)
Q Consensus 113 ~p~~is~~Ql~~fr~l~ 129 (139)
.-+++|++.++++.+..
T Consensus 6 nmmPMSPddy~~l~~~V 22 (23)
T PF12162_consen 6 NMMPMSPDDYDELERMV 22 (23)
T ss_dssp S---S-HHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhh
Confidence 44789999999988754
No 33
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=23.96 E-value=54 Score=25.08 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.3
Q ss_pred eCCceecCHHHHHHHHHhhcCCCCCCCC
Q psy16086 111 FKNPILLSHEQEMEDRARDRRSPVEDRP 138 (139)
Q Consensus 111 ~~~p~~is~~Ql~~fr~l~~~~~~~~rp 138 (139)
.+.+++|+.+.++++|.-+... ||||
T Consensus 87 ~k~~~Pvtke~v~~~k~k~~ei--naRP 112 (215)
T PF07780_consen 87 NKPQLPVTKEEVAEYKEKLREI--NARP 112 (215)
T ss_pred cCCCCCCCHHHHHHHHHHHHHH--cCCc
Confidence 3456899999999999877665 8888
No 34
>KOG4577|consensus
Probab=23.82 E-value=55 Score=26.41 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.8
Q ss_pred Cc-eecCHHHHHHHHHhhcCCCCCCC
Q psy16086 113 NP-ILLSHEQEMEDRARDRRSPVEDR 137 (139)
Q Consensus 113 ~p-~~is~~Ql~~fr~l~~~~~~~~r 137 (139)
.| ..|+..||..|++..+++|.-||
T Consensus 169 RPRTTItAKqLETLK~AYn~SpKPAR 194 (383)
T KOG4577|consen 169 RPRTTITAKQLETLKQAYNTSPKPAR 194 (383)
T ss_pred CCcceeeHHHHHHHHHHhcCCCchhH
Confidence 44 46999999999999999998877
No 35
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.53 E-value=68 Score=18.41 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.0
Q ss_pred CCceecCHHHHHHHHH
Q psy16086 112 KNPILLSHEQEMEDRA 127 (139)
Q Consensus 112 ~~p~~is~~Ql~~fr~ 127 (139)
..|++|+.+|+..|-.
T Consensus 2 ~~plpi~e~~i~~~~s 17 (47)
T PF04688_consen 2 KSPLPIDEEQINQLIS 17 (47)
T ss_pred CCCCCcCHHHHHHHHH
Confidence 3689999999988743
No 36
>PHA02771 hypothetical protein; Provisional
Probab=22.43 E-value=63 Score=21.29 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=15.3
Q ss_pred EEeCCceecCHHHHHHHH
Q psy16086 109 IDFKNPILLSHEQEMEDR 126 (139)
Q Consensus 109 iV~~~p~~is~~Ql~~fr 126 (139)
++|++|+.||..|++.+-
T Consensus 24 L~F~~~l~ite~ey~ELi 41 (90)
T PHA02771 24 LMFNKEIIVSYNQFEEII 41 (90)
T ss_pred hhcCCCeEecHHHHHHHH
Confidence 578999999999988773
No 37
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.34 E-value=1.2e+02 Score=21.14 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.7
Q ss_pred ceEEEEEeCCceecCHHHHHHHHHhhcC
Q psy16086 104 EVVTWIDFKNPILLSHEQEMEDRARDRR 131 (139)
Q Consensus 104 E~V~WiV~~~p~~is~~Ql~~fr~l~~~ 131 (139)
-|-.||..+-. ++.+|+++|+++..+
T Consensus 49 HGaV~i~Y~p~--~~~~~v~~L~~l~~~ 74 (130)
T PF11303_consen 49 HGAVWITYDPC--LPPDQVAKLKALAKS 74 (130)
T ss_pred cCcEEEEECCC--CCHHHHHHHHHHHhc
Confidence 46678887766 999999999999876
No 38
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=22.17 E-value=28 Score=25.04 Aligned_cols=31 Identities=29% Similarity=0.557 Sum_probs=20.1
Q ss_pred ecCCCCCCcceE-------EEEEeCCce-ecCHHHHHHHHH
Q psy16086 95 GSLTTPPCSEVV-------TWIDFKNPI-LLSHEQEMEDRA 127 (139)
Q Consensus 95 GSLTtPpC~E~V-------~WiV~~~p~-~is~~Ql~~fr~ 127 (139)
|+ ||||.+.+ .|+=+.+|= .++-.=+..||+
T Consensus 82 Gr--TPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~ 120 (146)
T COG0117 82 GR--TPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRA 120 (146)
T ss_pred CC--CcchHHHHHHhCCCEEEEEecCCCccccCchHHHHHH
Confidence 65 99999754 366677775 355555555554
No 39
>PHA02902 putative IMV membrane protein; Provisional
Probab=21.35 E-value=79 Score=19.59 Aligned_cols=17 Identities=18% Similarity=-0.109 Sum_probs=13.2
Q ss_pred ecCHHHHHHHHHhhcCC
Q psy16086 116 LLSHEQEMEDRARDRRS 132 (139)
Q Consensus 116 ~is~~Ql~~fr~l~~~~ 132 (139)
.++++|+.+|.++...+
T Consensus 53 ~lTpDQirAlHrlvT~S 69 (70)
T PHA02902 53 SLTPDQIKALHRLVSLS 69 (70)
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 46789999999887543
No 40
>PHA02772 hypothetical protein; Provisional
Probab=20.56 E-value=98 Score=20.62 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=15.0
Q ss_pred EEeCCceecCHHHHHHH
Q psy16086 109 IDFKNPILLSHEQEMED 125 (139)
Q Consensus 109 iV~~~p~~is~~Ql~~f 125 (139)
+.|++|+.+|..|+..+
T Consensus 24 l~F~~~l~ite~e~~eL 40 (95)
T PHA02772 24 LAFKRPLIISENEYNEL 40 (95)
T ss_pred EEccCceEecHHHHHHH
Confidence 67999999999988776
Done!