RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16086
(139 letters)
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 150 bits (381), Expect = 1e-46
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP 66
G +P E+H+V + + D A G GL VLA+F E + N ++ +++ L +
Sbjct: 109 GHRFPAEIHVVHLSTAFARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLEEIAEE 168
Query: 67 NDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ +++ +LP + YF Y+GSLTTPPC++ V W F ++LS +Q
Sbjct: 169 GSETQVPGL--DISALLPSDFSRYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQ 221
>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural GEN
structural genomics consortium, SGC, glycoprotein,
lyase, M binding, secreted; 1.90A {Homo sapiens}
Length = 278
Score = 147 bits (373), Expect = 3e-45
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVS-HKANPTFQGIVASLPNVTW 65
G + +E+H+V YN Y S D AQ DGL VLA+F EV + N + ++ L N+ +
Sbjct: 111 GIRHVIEIHIVHYNSKYKSYDIAQDAPDGLAVLAAFVEVKNYPENTYYSNFISHLANIKY 170
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
P T + ++ D+LP+ Y+TY GSLTTPPC+E V W + + LS Q
Sbjct: 171 PGQRTTLTGL--DVQDMLPRNLQHYYTYHGSLTTPPCTENVHWFVLADFVKLSRTQ 224
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 146 bits (369), Expect = 9e-45
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
+ ELH+V Y+ Y S A GL VL EV NP + I++ L + +
Sbjct: 110 SEATAAELHVVHYDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRY 169
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ + ++ ++ P++ +F Y GSLTTPPC + V W F +S Q
Sbjct: 170 KDQKTSVPPF--SVRELFPQQLEQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQ 223
>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
mutation, lyase, metal-binding, lyase-lyase inhibitor
compl; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A*
1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A*
1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A
1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ...
Length = 260
Score = 144 bits (366), Expect = 2e-44
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP 66
Y ELH+V +N Y +A DGL VL F +V A P Q +V L ++
Sbjct: 111 KKKYAAELHLVHWNTKYGDFGKAVQQPDGLAVLGIFLKVG-SAKPGLQKVVDVLDSIKTK 169
Query: 67 NDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ + + +LP+ + Y+TY GSLTTPP E VTWI K PI +S EQ
Sbjct: 170 GKSADFTNF--DPRGLLPESLD-YWTYPGSLTTPPLLECVTWIVLKEPISVSSEQ 221
>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
2hfy_A 3uyn_A 1z97_A 1flj_A*
Length = 260
Score = 144 bits (364), Expect = 4e-44
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP 66
G Y ELH+V +N Y++ A +DG+ V+ F ++ N FQ + +L +
Sbjct: 111 GVKYAAELHLVHWNPKYNTFKEALKQRDGIAVIGIFLKIG-HENGEFQIFLDALDKIKTK 169
Query: 67 NDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ + + P ++ Y+TY+GS TTPPC E + W+ K P+ +S +Q
Sbjct: 170 GKEAPFTKF--DPSSLFPASRD-YWTYQGSFTTPPCEECIVWLLLKEPMTVSSDQ 221
>3fw3_A Carbonic anhydrase 4; structure-based drug design. small molecule
complex. CO-CRYS membrane, disease mutation,
glycoprotein, GPI-anchor; HET: ETS GLC; 1.72A {Homo
sapiens} PDB: 1znc_A* 3f7b_A* 3f7u_A*
Length = 266
Score = 143 bits (362), Expect = 1e-43
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 7 GFSYPMELHMVFYNKD--YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVT 64
G + ME+H+V + + AQ +D + VLA E + N FQ +V +L N+
Sbjct: 114 GEHFAMEMHIVHEKEKGTSRNVKEAQDPEDEIAVLAFLVEAGTQVNEGFQPLVEALSNIP 173
Query: 65 WPNDNFTAVHVPGNLNDILPKKKNL--YFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
P + T +L D+LPK++ L YF Y GSLTTP C E V W F+ PI L EQ
Sbjct: 174 KPEMSTTMAES--SLLDLLPKEEKLRHYFRYLGSLTTPTCDEKVVWTVFREPIQLHREQ 230
>1keq_A F65A/Y131C-MI carbonic anhydrase V; proton transfer, engineered
residue, lyase; HET: 4MZ; 1.88A {Mus musculus} SCOP:
b.74.1.1 PDB: 1dmx_A 1dmy_A* 1urt_A
Length = 248
Score = 141 bits (357), Expect = 4e-43
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
G +YP ELH+V +N Y++ +A ++GL V+ F ++ + Q +V LP V
Sbjct: 90 GHTYPAELHLVHWNSTKYENCKKASVGENGLAVIGVFLKLG-AHHQALQKLVDVLPEVRH 148
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ + + ++P ++ Y+TY GSLTTPP +E VTWI K P+ +S Q
Sbjct: 149 KDTQVAMGPF--DPSCLMPACRD-YWTYPGSLTTPPLAESVTWIVQKTPVEVSPSQ 201
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 141 bits (358), Expect = 6e-43
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
G +P+E+ + ++ D + S + A K L L+ FEV + N F+ I+ + +V+
Sbjct: 116 GQKFPLEMQIYCFDADRFSSFEEAVKGKGKLRALSILFEVGTEENLDFKAIIDGVESVSR 175
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
L ++LP + Y+ Y GSLT+PPC++ V WI FK+ + +S Q
Sbjct: 176 FGKQAALDPF--ILLNLLPNSTDKYYIYNGSLTSPPCTDTVDWIVFKDTVSISESQ 229
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 141 bits (357), Expect = 6e-43
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
G + ELH+V YN D Y + A +GL VLA E+ NP++ I + L +V +
Sbjct: 109 GQHFAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMG-SFNPSYDKIFSHLQHVKY 167
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
N+ ++LP++ Y+ Y+GSLTTPPC+ V W F+NP+ +S EQ
Sbjct: 168 KGQEAFVPGF--NIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQ 221
>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
musculus} SCOP: b.74.1.1 PDB: 3znc_A*
Length = 258
Score = 140 bits (354), Expect = 1e-42
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP 66
G + ME+H+V + KD VLA EV K N FQ +V +LP+++ P
Sbjct: 110 GRHFAMEMHIVHKKLTSS----KEDSKDKFAVLAFMIEVGDKVNKGFQPLVEALPSISKP 165
Query: 67 NDNFTAVHVPGNLNDILPKKKNL--YFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ T +L D+LP + YF Y GSLTTP C E V W +K PI + Q
Sbjct: 166 HSTSTVRES--SLQDMLPPSTKMYTYFRYNGSLTTPNCDETVIWTVYKQPIKIHKNQ 220
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 140 bits (354), Expect = 2e-42
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
G +P+E+ + FYN D +DS A + +A FF+VS + N I+ L V
Sbjct: 116 GRRFPVEMQIFFYNPDDFDSFQTAISENRIIGAMAIFFQVSPRDNSALDPIIHGLKGVVH 175
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
L D+LP Y+ Y GSLTTPPCSE+V WI F+ P+ +S+ Q
Sbjct: 176 HEKETFLDPF--ILRDLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQ 229
>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
2nn7_A* 3lxe_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
Length = 260
Score = 139 bits (352), Expect = 3e-42
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
G Y ELH+ +N Y S A DGL V+ +V +ANP Q ++ +L +
Sbjct: 111 GVKYSAELHVAHWNSAKYSSLAEAASKADGLAVIGVLMKVG-EANPKLQKVLDALQAIKT 169
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ + + +LP + ++TY GSLT PP E VTWI K I +S EQ
Sbjct: 170 KGKRAPFTNF--DPSTLLPSSLD-FWTYPGSLTHPPLYESVTWIICKESISVSSEQ 222
>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, metal binding PROT;
HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A* 3da2_A*
Length = 264
Score = 138 bits (350), Expect = 7e-42
Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
G SY ELH+V +N D Y S A DGL VL F ++ + N Q I +L ++
Sbjct: 114 GVSYAAELHVVHWNSDKYPSFVEAAHEPDGLAVLGVFLQIG-EPNSQLQKITDTLDSIKE 172
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ +L +LP + Y+TY GSLT PP E VTWI K PI +S +Q
Sbjct: 173 KGKQTRFTNF--DLLSLLPPSWD-YWTYPGSLTVPPLLESVTWIVLKQPINISSQQ 225
>3ml5_A Carbonic anhydrase 7; protein-inhibitor complex, lyase; HET: AZM;
2.05A {Homo sapiens} PDB: 3mdz_A*
Length = 269
Score = 137 bits (346), Expect = 2e-41
Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
G S+P ELH+V +N Y + A DGL V+ F E +P+ + +L V +
Sbjct: 118 GKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVVGVFLETG-DEHPSMNRLTDALYMVRF 176
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
N +LP ++ Y+TY GSLTTPP SE VTWI + PI +S Q
Sbjct: 177 KGTKAQFSCF--NPKSLLPASRH-YWTYPGSLTTPPLSESVTWIVLREPISISERQ 229
>2w2j_A Carbonic anhydrase-related protein; lyase, metal-binding; 1.60A
{Homo sapiens}
Length = 291
Score = 136 bits (345), Expect = 8e-41
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
++PMELH++ +N + S D A G G+ ++A F ++ K + + + L ++ +
Sbjct: 134 FKAFPMELHLIHWNSTLFGSIDEAVGKPHGIAIIALFVQIG-KEHVGLKAVTEILQDIQY 192
Query: 66 PNDNFTAVHVPGNLNDILPKKKNL-YFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ T N N +LP Y+ Y+GSLT PPCSE VTWI F+ P+ +S Q
Sbjct: 193 KGKSKTIPCF--NPNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQ 247
>3b1b_A Carbonic anhydrase 1; N-glycosylation, zinc-finger, lyase; HET:
NAG; 1.88A {Chlamydomonas reinhardtii}
Length = 377
Score = 134 bits (339), Expect = 2e-39
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVS-HKANPTFQGIVASLPNVTW 65
G YP+ELH+V + + + V F++ N + I A++P+
Sbjct: 174 GKIYPLELHIVHQVTEKLEACKG----GCFSVTGILFQLDNGPDNELLEPIFANMPSREG 229
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
N L ++LP ++ Y TY+GSLTTPPCSE + W P +S Q
Sbjct: 230 TFSN-LPAGTTIKLGELLPSDRD-YVTYEGSLTTPPCSEGLLWHVMTQPQRISFGQ 283
>4e9o_X D8L antigen, IMV membrane protein; CAH alpha fold, VP7 motif, beta
sheet, cell surface chondroi binding, viral entry,
chondroitin sulfate; 1.42A {Vaccinia virus} PDB: 4etq_X
Length = 269
Score = 131 bits (331), Expect = 5e-39
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
+ Y E+++V +NK Y S + A+ + DGL++++ F +V N FQ IV L ++
Sbjct: 84 VYKYSGEINLVHWNKKKYSSYEEAKKHDDGLIIISIFLQVLDHKNVYFQKIVNQLDSIRS 143
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEME 124
N + L+++LP K + YFTY G TT S WI F PI + +Q +
Sbjct: 144 ANTS-APFDSVFYLDNLLPSKLD-YFTYLG--TTINHSADAVWIIFPTPINIHSDQLSK 198
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant
protein, algal Ca anhydrase, salt tolerant protein, zinc
enzyme; 1.86A {Dunaliella salina}
Length = 291
Score = 129 bits (325), Expect = 6e-38
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP 66
G YP+ELH+V +D L V+ ++ S + + +
Sbjct: 142 GIHYPLELHIVMQEQDPADVA-----TAQLAVIGIMYKYSENGDAFLNSLQTQIEGKIGD 196
Query: 67 NDNF---TAVHVPG-NLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
T V + N+ L Y Y GSLTTP C E V W F P ++ EQ
Sbjct: 197 GTASYGDTGVSIDNINVKTQLLPSSLKYAGYDGSLTTPGCDERVKWHVFTTPREVTREQ 255
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 120 bits (303), Expect = 4e-35
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSH--KANPTFQGIVASLPNVT 64
+PME+H VF V+ FF++S + P F + A + N+
Sbjct: 108 EEHFPMEVHFVFQTAAK-----------ETAVVGFFFQLSEVGDSVPLFDSVFAPIDNIP 156
Query: 65 WPNDNFTAVHVPGNLNDILPKKKNL-YFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ T + + +L + Y GSLTTPPC+E V W P+ L+ +
Sbjct: 157 DAGTSTTTGQL--DFGGLLDHFNRHGVYQYTGSLTTPPCTEEVMWNLSTEPLPLTVQG 212
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 119 bits (300), Expect = 9e-35
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP 66
G ++PME H V +++ +VLA +E K N I +P
Sbjct: 100 GRTFPMEAHFVHLDENK-----------QPLVLAVLYEAG-KTNGRLSSIWNVMPMTA-- 145
Query: 67 NDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
++ P + + +LPK+ Y+ + GSLTTPPC+E V+W+ K + Q
Sbjct: 146 --GKVKLNQPFDASTLLPKRLK-YYRFAGSLTTPPCTEGVSWLVLKTYDHIDQAQ 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 2.1
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 15/78 (19%)
Query: 6 FGFS-------YPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVA 58
+GFS P+ L + + Y ++ + + K F+ I
Sbjct: 1657 YGFSILDIVINNPVNL--TIHFGGEKGKRIRENYSA--MIFETIVDGKLKTEKIFKEINE 1712
Query: 59 SLPNVTW--PND--NFTA 72
+ T+ + T
Sbjct: 1713 HSTSYTFRSEKGLLSATQ 1730
Score = 26.2 bits (57), Expect = 4.7
Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 20/122 (16%)
Query: 13 ELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVAS--LPNVTWPNDNF 70
++H + ++ K+ ++ ++ A F S V N
Sbjct: 100 DIHALAAKLLQENDTTLVKTKE---LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 71 TAV----HVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQEMEDR 126
A+ GN +D + ++LY TY V I F L + D
Sbjct: 157 VAIFGGQ---GNTDDYFEELRDLYQTYH--------VLVGDLIKFSAETLSELIRTTLDA 205
Query: 127 AR 128
+
Sbjct: 206 EK 207
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 26.0 bits (56), Expect = 5.7
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 110 DFKNPILLSHEQEMEDRARDRRSPVEDRPE 139
NP Q + RA R P+ +
Sbjct: 481 KIPNPRFQRLFQCLLHRALHPREPLPPIQQ 510
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 9.4
Identities = 21/155 (13%), Positives = 47/155 (30%), Gaps = 35/155 (22%)
Query: 15 HMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPNDNFTAVH 74
H ++ D+++ + YKD L V FE + N + + ++ + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSV----FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56
Query: 75 VPGNLND-------ILPKKKNLYFTYKGSLTTP---------------PCSEVVTWIDFK 112
++ +L K++ + + + P +I+ +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 113 NPILLSHEQEMEDRARDRRSPV--------EDRPE 139
+ L + Q R P E RP
Sbjct: 117 DR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.423
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,117,084
Number of extensions: 111471
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 26
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)