RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16086
(139 letters)
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 107 bits (268), Expect = 3e-30
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 9 SYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWPN 67
+ ELH+V Y+ Y S A GL VL EV NP + I++ L + + +
Sbjct: 110 ATAAELHVVHYDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYKD 169
Query: 68 DNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ P ++ ++ P++ +F Y GSLTTPPC + V W F +S Q
Sbjct: 170 QKTSVP--PFSVRELFPQQLEQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQ 221
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
isozyme III [TaxId: 10116]}
Length = 259
Score = 102 bits (256), Expect = 1e-28
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP 66
G Y ELH+V +N Y++ A DG+ V+ F ++ + FQ ++ +L +
Sbjct: 110 GVKYAAELHLVHWNPKYNTFGEALKQPDGIAVVGIFLKIG-REKGEFQILLDALDKIKTK 168
Query: 67 NDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
H + + + P ++ Y+TY GS TTPPC E + W+ K P+ +S +Q
Sbjct: 169 GKEAPFNHF--DPSCLFPACRD-YWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQ 220
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 98.8 bits (245), Expect = 7e-27
Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 4 LLFGFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNV 63
+ G + ME+H+V D KD VLA EV K N FQ +V +LP++
Sbjct: 107 SIDGRHFAMEMHIVHKKLTSSKEDS----KDKFAVLAFMIEVGDKVNKGFQPLVEALPSI 162
Query: 64 TWPNDNFTAVHVPGNLNDILPKKKNL--YFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ P+ T +L D+LP + YF Y GSLTTP C E V W +K PI + Q
Sbjct: 163 SKPHSTSTVR--ESSLQDMLPPSTKMYTYFRYNGSLTTPNCDETVIWTVYKQPIKIHKNQ 220
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 98.4 bits (244), Expect = 1e-26
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 4 LLFGFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPN 62
+ G Y ELH+ +N Y S A DGL V+ +V +ANP Q ++ +L
Sbjct: 106 TVDGVKYSAELHVAHWNSAKYSSLAEAASKADGLAVIGVLMKVG-EANPKLQKVLDALQA 164
Query: 63 VTWPNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ + + + +LP + ++TY GSLT PP E VTWI K I +S EQ
Sbjct: 165 IKTKGKRAPFTNF--DPSTLLPSSLD-FWTYPGSLTHPPLYESVTWIICKESISVSSEQ 220
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 97.6 bits (242), Expect = 2e-26
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 7 GFSYPMELHMVFYNKDYDSSD--RAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVT 64
G + ME+H+V + S + AQ +D + VLA E + N FQ +V +L N+
Sbjct: 110 GEHFAMEMHIVHEKEKGTSRNVKEAQDPEDEIAVLAFLVEAGTQVNEGFQPLVEALSNIP 169
Query: 65 WPNDNFTAVHVPGNLNDILPKKKNL--YFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
P + T +L D+LPK++ L YF Y GSLTTP C E V W F+ PI L EQ
Sbjct: 170 KPEMSTTMAES--SLLDLLPKEEKLRHYFRYLGSLTTPTCDEKVVWTVFREPIQLHREQ 226
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme II [TaxId: 9606]}
Length = 259
Score = 96.8 bits (240), Expect = 4e-26
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP 66
Y ELH+V +N Y +A DGL VL F +V A P Q +V L ++
Sbjct: 110 KKKYAAELHLVHWNTKYGDFGKAVQQPDGLAVLGIFLKVG-SAKPGLQKVVDVLDSIKTK 168
Query: 67 NDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ + + +LP+ + Y+TY GSLTTPP E VTWI K PI +S EQ
Sbjct: 169 GKSADFTNF--DPRGLLPESLD-YWTYPGSLTTPPLLECVTWIVLKEPISVSSEQ 220
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 94.9 bits (235), Expect = 2e-25
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 4 LLFGFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPN 62
+ G + ELH+V YN D Y + A +GL VLA E+ NP++ I + L +
Sbjct: 104 TVSGQHFAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMG-SFNPSYDKIFSHLQH 162
Query: 63 VTWPNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
V + A N+ ++LP++ Y+ Y+GSLTTPPC+ V W F+NP+ +S EQ
Sbjct: 163 VKYKGQ--EAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQ 219
>d1keqa_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
liver, isozyme V [TaxId: 10090]}
Length = 238
Score = 92.6 bits (229), Expect = 9e-25
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 7 GFSYPMELHMVFYNKD-YDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTW 65
G +YP ELH+V +N Y++ +A ++GL V+ F ++ + Q +V LP V
Sbjct: 87 GHTYPAELHLVHWNSTKYENCKKASVGENGLAVIGVFLKL-GAHHQALQKLVDVLPEVRH 145
Query: 66 PNDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
+ + + ++P ++ Y+TY GSLTTPP +E VTWI K P+ +S Q
Sbjct: 146 KDTQVAMGPF--DPSCLMPACRD-YWTYPGSLTTPPLAESVTWIVQKTPVEVSPSQ 198
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 223
Score = 76.8 bits (188), Expect = 9e-19
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 7 GFSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVASLPNVTWP 66
G ++PME H V +++ +VLA +E K N I +P
Sbjct: 100 GRTFPMEAHFVHLDENKQP-----------LVLAVLYEAG-KTNGRLSSIWNVMPMTAGK 147
Query: 67 NDNFTAVHVPGNLNDILPKKKNLYFTYKGSLTTPPCSEVVTWIDFKNPILLSHEQ 121
P + + +LPK+ Y+ + GSLTTPPC+E V+W+ K + Q
Sbjct: 148 VKLNQ----PFDASTLLPKRLK-YYRFAGSLTTPPCTEGVSWLVLKTYDHIDQAQ 197
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 24.9 bits (53), Expect = 4.4
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 16 MVFYNKDYDSSDRAQGYKDGLVVLASFFEVSHKANPTFQGIVA 58
V NK D+ R Y VV S + NP F I A
Sbjct: 315 GVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNP-FVTITA 356
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 165
Score = 24.1 bits (52), Expect = 5.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 8 FSYPMELHMVFYNKDYDSSDRAQG 31
FS+ +E H F +++YD S G
Sbjct: 95 FSFGVEEHTEFPSQEYDPSIGIYG 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.423
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 524,810
Number of extensions: 22353
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 15
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.0 bits)