BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16087
         (252 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
           With Eticlopride
 pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
           With Eticlopride
          Length = 481

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 7/110 (6%)

Query: 53  SNVFLLSVYLPFV-YLQVNGK-WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVT 110
           +++ + ++ +P+V YL+V G  W      CD ++ +DVM  T+SI+NL AISIDRY AV 
Sbjct: 83  ADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVV 142

Query: 111 QPIKYAKHKNN---RRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLC 157
            P+ Y         RRV L I  VW ++ A+  P++ G N T D  P +C
Sbjct: 143 MPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGD--PTVC 190



 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 2   LVYKLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           +VY     G W      CD ++ +DVM  T+SI+NL AISIDR
Sbjct: 95  VVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDR 137


>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
          Length = 479

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 57  LLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYA 116
           ++S+ L   Y+ +N +W L +  CD ++++D + S +S+ NL+ IS DRY ++T+P+ Y 
Sbjct: 63  VISMNLFTTYIIMN-RWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYR 121

Query: 117 KHKNNRRVWLTIVLVWAISVAIGSPIVL 144
             +  +R  + I L W IS  + +P +L
Sbjct: 122 AKRTTKRAGVMIGLAWVISFVLWAPAIL 149



 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 11  KWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           +W L +  CD ++++D + S +S+ NL+ IS DR
Sbjct: 77  RWALGNLACDLWLSIDYVASNASVMNLLVISFDR 110


>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob92)
 pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob92)
 pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob102)
 pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob102)
 pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Carmoterol
 pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Carmoterol
 pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Isoprenaline
 pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Isoprenaline
 pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Salbutamol
 pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Salbutamol
 pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Bucindolol
 pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Bucindolol
 pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Carvedilol
 pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Carvedilol
          Length = 315

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%)

Query: 67  LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWL 126
           L V G W    F+C+ + ++DV+C T+SI  L  I+IDRY+A+T P +Y       R  +
Sbjct: 71  LVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKV 130

Query: 127 TIVLVWAISVAIG 139
            I  VWAIS  + 
Sbjct: 131 IICTVWAISALVS 143



 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 6   LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           L V G W    F+C+ + ++DV+C T+SI  L  I+IDR
Sbjct: 71  LVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDR 109


>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Carazolol
 pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Carazolol
 pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Iodocyanopindolol
 pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Iodocyanopindolol
 pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
           Receptor
 pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
           Receptor
          Length = 313

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%)

Query: 67  LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWL 126
           L V G W    F+C+ + ++DV+C T+SI  L  I+IDRY+A+T P +Y       R  +
Sbjct: 71  LVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKV 130

Query: 127 TIVLVWAISVAIG 139
            I  VWAIS  + 
Sbjct: 131 IICTVWAISALVS 143



 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 6   LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           L V G W    F+C+ + ++DV+C T+SI  L  I+IDR
Sbjct: 71  LVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDR 109


>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
           With Doxepin
          Length = 452

 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 18/151 (11%)

Query: 23  IAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLS----------VYLPF--VYLQVN 70
           + +  +C  +   NL+ +   R +       N++++S          V +P   +YL ++
Sbjct: 13  VVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS 72

Query: 71  GKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVL 130
            KW L   +C F+++MD + ST+SIF++  + IDRY +V QP++Y K++   R   TI+ 
Sbjct: 73  -KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILG 131

Query: 131 VWAISVAIGSPIVLGLNN----TPDRVPDLC 157
            W +S     PI LG N+    T  R  D C
Sbjct: 132 AWFLSFLWVIPI-LGWNHFMQQTSVRREDKC 161



 Score = 35.8 bits (81), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 12/63 (19%)

Query: 10  GKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQV 69
            KW L   +C F+++MD + ST+SIF++  + IDR +            SV  P  YL+ 
Sbjct: 72  SKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYR------------SVQQPLRYLKY 119

Query: 70  NGK 72
             K
Sbjct: 120 RTK 122


>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
           Receptor Bound To An Antagonist
          Length = 467

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 55  VFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIK 114
           VF +++Y  +    V G W L   VCD ++A+D + S +S+ NL+ IS DRY  VT+P+ 
Sbjct: 74  VFSMNLYTLYT---VIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLT 130

Query: 115 YAKHKNNRRVWLTIVLVWAISVAIGSPIVL------GLNNTPDRVPDLCXXXXXXXXXXX 168
           Y   +  +   + I   W +S  + +P +L      G+    D    +            
Sbjct: 131 YPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGT 190

Query: 169 XXXXXXXPCIIMVFLYYNI 187
                  P IIM  LY++I
Sbjct: 191 AIAAFYLPVIIMTVLYWHI 209



 Score = 38.9 bits (89), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 10  GKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTK 51
           G W L   VCD ++A+D + S +S+ NL+ IS DR   C TK
Sbjct: 87  GYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDR-YFCVTK 127


>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
 pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
           In Complex With The Inverse Agonist Ici 118,551
 pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
           In Complex With A Novel Inverse Agonist
 pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
           In Complex With The Neutral Antagonist Alprenolol
          Length = 490

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   +F C+F+ ++DV+C T+SI+ L  I++DRY A+T P KY       +  + I++VW
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 166

Query: 133 AIS 135
            +S
Sbjct: 167 IVS 169



 Score = 38.1 bits (87), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 12  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           W   +F C+F+ ++DV+C T+SI+ L  I++DR
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDR 139


>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
          Length = 342

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   +F C+F+ ++DV+C T+SI  L  I++DRY A+T P KY       +  + I++VW
Sbjct: 76  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 135

Query: 133 AIS 135
            +S
Sbjct: 136 IVS 138



 Score = 37.4 bits (85), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 12  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           W   +F C+F+ ++DV+C T+SI  L  I++DR
Sbjct: 76  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 108


>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
           Of A G Protein Coupled Receptor
          Length = 309

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   +F C+F+ ++DV+C T+SI  L  I++DRY A+T P KY       +  + I++VW
Sbjct: 71  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 130

Query: 133 AIS 135
            +S
Sbjct: 131 IVS 133



 Score = 37.0 bits (84), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 12  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           W   +F C+F+ ++DV+C T+SI  L  I++DR
Sbjct: 71  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 103


>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
           Receptor- Fab Complex
          Length = 366

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   +F C+F+ ++DV+C T+SI  L  I++DRY A+T P KY       +  + I++VW
Sbjct: 100 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 159

Query: 133 AIS 135
            +S
Sbjct: 160 IVS 162



 Score = 37.0 bits (84), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 12  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           W   +F C+F+ ++DV+C T+SI  L  I++DR
Sbjct: 100 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 132


>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
          Length = 365

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   +F C+F+ ++DV+C T+SI  L  I++DRY A+T P KY       +  + I++VW
Sbjct: 99  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 158

Query: 133 AIS 135
            +S
Sbjct: 159 IVS 161



 Score = 37.0 bits (84), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 12  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           W   +F C+F+ ++DV+C T+SI  L  I++DR
Sbjct: 99  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 131


>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
          Length = 458

 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   +F C+F+ ++DV+C T+SI  L  I++DRY A+T P KY       +  + I++VW
Sbjct: 75  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 134

Query: 133 AIS 135
            +S
Sbjct: 135 IVS 137



 Score = 37.0 bits (84), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 12  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           W   +F C+F+ ++DV+C T+SI  L  I++DR
Sbjct: 75  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 107


>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
           Protein Complex
          Length = 514

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   +F C+F+ ++DV+C T+SI  L  I++DRY A+T P KY       +  + I++VW
Sbjct: 248 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 307

Query: 133 AIS 135
            +S
Sbjct: 308 IVS 310



 Score = 37.0 bits (84), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 12  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           W   +F C+F+ ++DV+C T+SI  L  I++DR
Sbjct: 248 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 280


>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
           Protein- Coupled Receptor
          Length = 500

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   +F C+F+ ++DV+C T+SI  L  I++DRY A+T P KY       +  + I++VW
Sbjct: 106 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 165

Query: 133 AIS 135
            +S
Sbjct: 166 IVS 168



 Score = 37.0 bits (84), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 12  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           W   +F C+F+ ++DV+C T+SI  L  I++DR
Sbjct: 106 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 138


>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
           Beta2 Adrenoceptor
          Length = 501

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   +F C+F+ ++DV+C T+SI  L  I++DRY A+T P KY       +  + I++VW
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 166

Query: 133 AIS 135
            +S
Sbjct: 167 IVS 169



 Score = 36.6 bits (83), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 12  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           W   +F C+F+ ++DV+C T+SI  L  I++DR
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 139


>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
 pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
           Xac
 pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
           Caffeine
 pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
           6-(2,6-
           Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
 pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
           4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
          Length = 329

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 80  CDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIG 139
           C F     ++ + SSIF+L+AI+IDRYIA+  P++Y       R    I + W +S AIG
Sbjct: 77  CLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIG 136

Query: 140 SPIVLGLNN 148
              +LG NN
Sbjct: 137 LTPMLGWNN 145


>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
           Morphinan Antagonist
          Length = 464

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 57  LLSVYLPFVYLQ-VNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKY 115
           L +  LPF  +  + G W   + +C   I++D     +SIF L  +S+DRYIAV  P+K 
Sbjct: 65  LATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKA 124

Query: 116 AKHKNNRRVWLTIVLVWAISVAIGSPIVL 144
              +  R   +  V  W +S AIG P++ 
Sbjct: 125 LDFRTPRNAKIVNVCNWILSSAIGLPVMF 153



 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 10  GKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
           G W   + +C   I++D     +SIF L  +S+DR
Sbjct: 80  GTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDR 114


>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
 pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
          Length = 325

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 80  CDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIG 139
           C F     ++ + SSIF+L+AI+IDRYIA+  P++Y       R    I + W +S AIG
Sbjct: 77  CLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 136

Query: 140 SPIVLGLNN 148
              +LG NN
Sbjct: 137 LTPMLGWNN 145


>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
           Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
 pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
           Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
          Length = 326

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 80  CDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIG 139
           C F     ++ + SSIF+L+AI+IDRYIA+  P++Y       R    I + W +S AIG
Sbjct: 77  CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 136

Query: 140 SPIVLGLNN 148
              +LG NN
Sbjct: 137 LTPMLGWNN 145


>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
           Complex With Zm241385 At 1.8a Resolution
          Length = 447

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 80  CDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIG 139
           C F     ++ + SSIF+L+AI+IDRYIA+  P++Y       R    I + W +S AIG
Sbjct: 102 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 161

Query: 140 SPIVLGLNN 148
              +LG NN
Sbjct: 162 LTPMLGWNN 170


>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
           Receptor Bound To Zm241385.
 pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
           Receptor
          Length = 488

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 80  CDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIG 139
           C F     ++ + SSIF+L+AI+IDRYIA+  P++Y       R    I + W +S AIG
Sbjct: 92  CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 151

Query: 140 SPIVLGLNN 148
              +LG NN
Sbjct: 152 LTPMLGWNN 160


>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
           With Jdtic
 pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
           With Jdtic
          Length = 480

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 57  LLSVYLPF---VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPI 113
           L++  +PF   VYL     W   D +C   +++D     +SIF L  +S+DRYIAV  P+
Sbjct: 70  LVTTTMPFQSTVYLM--NSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV 127

Query: 114 KYAKHKNNRRVWLTIVLVWAISVAIG-SPIVLG 145
           K    +   +  +  + +W +S ++G S IVLG
Sbjct: 128 KALDFRTPLKAKIINICIWLLSSSVGISAIVLG 160


>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
           PEPTIDE Mimetic
 pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
           PEPTIDE Mimetic
          Length = 434

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query: 71  GKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVL 130
           G W   + +C   IA+D     +S F L A+S+DRY+A+  PI+    + + +     V 
Sbjct: 188 GFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVA 247

Query: 131 VWAISVAIGSPIVL 144
           +WA++  +G P+ +
Sbjct: 248 IWALASVVGVPVAI 261


>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
           Naltrindole
          Length = 461

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%)

Query: 73  WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVW 132
           W   + +C   +++D     +SIF L  +S+DRYIAV  P+K    +   +  L  + +W
Sbjct: 79  WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIW 138

Query: 133 AISVAIGSPIVL 144
            ++  +G PI++
Sbjct: 139 VLASGVGVPIMV 150


>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
          Length = 372

 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 14/101 (13%)

Query: 53  SNVFLLSV-YLPFVYLQVNG-----------KWGLPDFVCDFYIAMDVMCSTSSIFNLVA 100
           +N+F++++ +  F +  VNG           KW      C  Y  +  +    SI  +  
Sbjct: 68  ANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAM 127

Query: 101 ISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISV--AIG 139
           ISIDRY  + +P+  +K  ++RR ++ I+ VW  SV  AIG
Sbjct: 128 ISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIG 168


>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
 pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
 pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
           Rhodopsin
 pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
           Rhodopsin
 pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
 pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
          Length = 448

 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 14/101 (13%)

Query: 53  SNVFLLSV-YLPFVYLQVNG-----------KWGLPDFVCDFYIAMDVMCSTSSIFNLVA 100
           +N+F++++ +  F +  VNG           KW      C  Y  +  +    SI  +  
Sbjct: 69  ANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAM 128

Query: 101 ISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISV--AIG 139
           ISIDRY  + +P+  +K  ++RR ++ I+ VW  SV  AIG
Sbjct: 129 ISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIG 169


>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
           3.35a
 pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
           2.80a
          Length = 520

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 92  TSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLN 147
           ++S+F+L+AI+I+RYI + + +K     NN R++L I   W IS+ +G   ++G N
Sbjct: 147 SASVFSLLAIAIERYITMLK-MKLHNGSNNFRLFLLISACWVISLILGGLPIMGWN 201


>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
           Complex With Neurotensin (8-13)
          Length = 510

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 64  FVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRR 123
           + ++ V+  W   D  C  Y  +   C+ ++  N+ ++S+ RY+A+  P K     +  R
Sbjct: 94  YNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSR 153

Query: 124 VWLTIVLVWAISVAIGSPIV--LGLNN 148
               I  +W  S  +  P++  +GL N
Sbjct: 154 TKKFISAIWLASALLAIPMLFTMGLQN 180


>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
           (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
          Length = 484

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 53  SNVFLLSVYLPF--VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVT 110
           ++V  +SV LPF   Y      W     +C F  A       +SI  +  ISIDR++AV 
Sbjct: 65  ADVLFVSV-LPFKISYYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVV 123

Query: 111 QPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVL 144
            P++    +   R   T + +WA+++A   P++L
Sbjct: 124 YPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLL 157


>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
           With Nk1r
 pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
           LIGAND FOR Nk1r
 pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
           LIGAND For Nk1r
          Length = 364

 Score = 38.9 bits (89), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 69  VNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTI 128
           V+ +W    F C F+    +    +SI+++ A++ DRY+A+  P++        +V   I
Sbjct: 94  VHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKV--VI 151

Query: 129 VLVWAISVAIGSPIVLGLNNTPDRVPD 155
            ++W +++ +  P   G  +T + +P 
Sbjct: 152 CVIWVLALLLAFP--QGYYSTTETMPS 176


>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
           Alpha- 2a Adrenergic Receptor
          Length = 32

 Score = 36.6 bits (83), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 92  TSSIFNLVAISIDRYIAVTQPIKYAKHKNNRR 123
           TSSI +L AIS+DRY ++TQ I+Y   +  RR
Sbjct: 1   TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32


>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
           Alpha- 2a Adrenergic Receptor
          Length = 32

 Score = 34.7 bits (78), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 93  SSIFNLVAISIDRYIAVTQPIKYAKHKNNRR 123
           SSI +L AIS+DRY ++TQ I+Y   +  RR
Sbjct: 2   SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32


>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
          Length = 296

 Score = 30.8 bits (68), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 68  QVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLT 127
           +VNG W    F+C     +  +   S I  L  IS+DRY+A+    +    K +  V   
Sbjct: 71  KVNG-WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRH-LVKFV 128

Query: 128 IVLVWAISVAIGSPIVL 144
            +  W +S+ +  P  L
Sbjct: 129 CLGCWGLSMNLSLPFFL 145


>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue
           Peptide From The Alpha 2a Adrenergic Receptor
 pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue Peptide
           From The Alpha 2a Adrenergic Receptor
          Length = 32

 Score = 30.8 bits (68), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 93  SSIFNLVAISIDRYIAVTQPIKYAKHKNNRR 123
           SSI +L AIS+ RY ++TQ I+Y   +  RR
Sbjct: 2   SSIVHLCAISLIRYWSITQAIEYNLKRTPRR 32


>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Cyclic Peptide Antagonist Cvx15
 pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
 pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
          Length = 499

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 56  FLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKY 115
            L  + LPF  +     W   +F+C     +  +   SS++ L  IS+DRY+A+      
Sbjct: 95  LLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNS 154

Query: 116 AKHKNNRRVWLTIVLVW--AISVAIGSPIVLGLNNTPDR 152
            + +      +  V VW  A+ + I   I   ++   DR
Sbjct: 155 QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDR 193


>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
           Complex With Small Molecule Antagonist It1t
 pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
           Complex With Small Molecule Antagonist It1t
 pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
 pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
 pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
          Length = 502

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 56  FLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKY 115
            L  + LPF  +     W   +F+C     +  +   SS++ L  IS+DRY+A+      
Sbjct: 95  LLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNS 154

Query: 116 AKHKNNRRVWLTIVLVW--AISVAIGSPIVLGLNNTPDR 152
            + +      +  V VW  A+ + I   I   ++   DR
Sbjct: 155 QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDR 193


>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In I222
           Spacegroup
          Length = 508

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 56  FLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKY 115
            L  + LPF  +     W   +F+C     +  +   SS++ L  IS+DRY+A+      
Sbjct: 95  LLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNS 154

Query: 116 AKHKNNRRVWLTIVLVW--AISVAIGSPIVLGLNNTPDR 152
            + +      +  V VW  A+ + I   I   ++   DR
Sbjct: 155 QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDR 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,874,384
Number of Sequences: 62578
Number of extensions: 192223
Number of successful extensions: 442
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 80
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)