Query psy16087
Match_columns 252
No_of_seqs 126 out of 1698
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 20:32:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 7.6E-31 1.6E-35 218.4 7.5 224 7-242 22-277 (423)
2 KOG4220|consensus 100.0 1.5E-28 3.2E-33 204.6 12.3 183 21-203 33-232 (503)
3 PHA03234 DNA packaging protein 99.9 1.1E-26 2.3E-31 198.4 7.7 174 18-193 32-226 (338)
4 PHA02834 chemokine receptor-li 99.9 5.4E-26 1.2E-30 193.4 10.1 175 18-194 28-219 (323)
5 PHA02638 CC chemokine receptor 99.9 6.6E-24 1.4E-28 185.8 12.1 177 17-194 97-303 (417)
6 PHA03087 G protein-coupled che 99.9 3.6E-23 7.9E-28 177.0 15.6 181 14-195 36-234 (335)
7 PHA03235 DNA packaging protein 99.9 6E-23 1.3E-27 179.1 12.8 176 17-195 31-235 (409)
8 PF00001 7tm_1: 7 transmembran 99.9 5.7E-24 1.2E-28 173.5 2.7 165 35-199 1-183 (257)
9 KOG2087|consensus 99.5 1.5E-13 3.3E-18 114.2 9.9 171 21-194 27-222 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.3 1.5E-12 3.3E-17 107.3 6.1 162 30-196 2-176 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 99.1 4.1E-10 8.8E-15 93.8 8.6 167 28-198 3-191 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 98.8 2.1E-08 4.5E-13 85.3 9.3 175 28-202 6-230 (318)
13 PF05296 TAS2R: Mammalian tast 98.7 2.5E-07 5.3E-12 78.1 11.8 189 16-204 4-220 (303)
14 PF10323 7TM_GPCR_Srv: Serpent 98.4 7.4E-07 1.6E-11 74.5 6.6 118 79-196 74-195 (283)
15 PF11710 Git3: G protein-coupl 98.3 1.6E-05 3.4E-10 63.0 11.1 122 73-197 67-200 (201)
16 PF05462 Dicty_CAR: Slime mold 98.0 8.8E-05 1.9E-09 62.4 10.9 154 19-180 7-167 (303)
17 PF10321 7TM_GPCR_Srt: Serpent 97.5 0.00029 6.3E-09 59.6 6.5 178 15-196 29-227 (313)
18 PF00002 7tm_2: 7 transmembran 97.5 5.4E-05 1.2E-09 61.7 1.9 150 28-187 10-169 (242)
19 PF10292 7TM_GPCR_Srab: Serpen 97.4 0.0047 1E-07 52.7 12.5 141 20-163 18-177 (324)
20 PF10316 7TM_GPCR_Srbc: Serpen 97.2 0.0034 7.3E-08 52.1 9.3 106 24-130 11-131 (273)
21 PF02118 Srg: Srg family chemo 97.1 0.0011 2.4E-08 55.0 5.6 118 77-195 78-199 (275)
22 PF10317 7TM_GPCR_Srd: Serpent 96.2 0.0043 9.2E-08 52.2 3.2 117 24-145 4-142 (292)
23 KOG4193|consensus 96.1 0.014 3.1E-07 53.7 6.3 133 54-193 355-494 (610)
24 PF03402 V1R: Vomeronasal orga 96.0 0.01 2.2E-07 49.0 4.4 131 74-206 42-189 (265)
25 PF02175 7TM_GPCR_Srb: Serpent 95.7 0.31 6.6E-06 39.2 11.5 44 75-118 80-123 (236)
26 PF02117 7TM_GPCR_Sra: Serpent 95.6 0.093 2E-06 44.9 9.0 137 23-162 25-180 (328)
27 PF10327 7TM_GPCR_Sri: Serpent 95.4 0.29 6.3E-06 41.4 11.2 177 21-198 11-227 (303)
28 PF10326 7TM_GPCR_Str: Serpent 95.3 0.017 3.6E-07 48.9 3.4 88 27-115 7-117 (307)
29 PF10322 7TM_GPCR_Sru: Serpent 93.9 0.71 1.5E-05 39.1 9.8 118 77-195 100-226 (307)
30 PF01534 Frizzled: Frizzled/Sm 92.7 5.8 0.00013 34.0 13.8 87 76-164 90-176 (328)
31 PF03383 Serpentine_r_xa: Caen 92.7 0.17 3.8E-06 38.0 3.9 61 85-145 49-109 (153)
32 PF06681 DUF1182: Protein of u 92.5 0.6 1.3E-05 36.7 6.6 39 76-114 113-151 (226)
33 PF10318 7TM_GPCR_Srh: Serpent 89.9 2.2 4.8E-05 35.8 8.3 122 22-145 7-148 (302)
34 PF04789 DUF621: Protein of un 89.6 4.7 0.0001 33.4 9.4 113 79-192 89-214 (305)
35 PF03125 Sre: C. elegans Sre G 85.3 10 0.00022 33.0 9.9 35 83-117 126-160 (365)
36 PF10325 7TM_GPCR_Srz: Serpent 76.4 21 0.00045 29.4 8.4 111 85-196 87-198 (267)
37 PF02101 Ocular_alb: Ocular al 68.1 44 0.00095 29.2 8.4 108 76-194 112-219 (405)
38 PF13853 7tm_4: Olfactory rece 67.6 0.34 7.4E-06 36.1 -3.8 71 125-195 4-88 (144)
39 PF15086 UPF0542: Uncharacteri 57.1 35 0.00076 22.0 4.5 34 164-197 20-54 (74)
40 KOG4564|consensus 53.3 13 0.00029 33.4 2.9 143 75-239 224-367 (473)
41 PF02532 PsbI: Photosystem II 43.2 33 0.00072 18.7 2.4 21 16-36 6-26 (36)
42 PF01528 Herpes_glycop: Herpes 42.2 37 0.00081 29.6 3.9 38 162-199 299-336 (374)
43 PHA03237 envelope glycoprotein 36.8 44 0.00096 29.7 3.6 32 168-199 328-359 (424)
44 CHL00024 psbI photosystem II p 31.2 23 0.00049 19.4 0.6 21 16-36 6-26 (36)
45 COG1862 YajC Preprotein transl 28.9 96 0.0021 21.4 3.5 29 172-200 11-39 (97)
46 TIGR02976 phageshock_pspB phag 27.9 59 0.0013 21.3 2.2 26 172-197 5-30 (75)
47 KOG4220|consensus 26.3 83 0.0018 28.0 3.4 37 8-44 92-128 (503)
48 PF02699 YajC: Preprotein tran 25.2 1.4E+02 0.003 19.8 3.7 20 177-196 9-28 (82)
49 PF10669 Phage_Gp23: Protein g 25.2 1.1E+02 0.0023 21.1 3.1 32 168-199 18-49 (121)
50 PRK02655 psbI photosystem II r 24.7 34 0.00074 18.9 0.5 21 16-36 6-26 (38)
51 PF01102 Glycophorin_A: Glycop 22.2 26 0.00056 25.4 -0.3 22 32-53 76-97 (122)
52 PF15102 TMEM154: TMEM154 prot 21.2 28 0.00061 25.9 -0.3 13 170-182 58-70 (146)
53 COG3924 Predicted membrane pro 21.2 1.8E+02 0.004 18.8 3.4 26 166-191 44-69 (80)
54 KOG4016|consensus 21.1 3.2E+02 0.007 21.8 5.4 55 126-180 27-86 (233)
55 PF11044 TMEMspv1-c74-12: Plec 20.3 1.9E+02 0.0042 16.7 3.6 21 175-195 13-33 (49)
56 PF14654 Epiglycanin_C: Mucin, 20.0 1.2E+02 0.0025 20.9 2.5 39 14-54 15-53 (106)
No 1
>KOG4219|consensus
Probab=99.97 E-value=7.6e-31 Score=218.37 Aligned_cols=224 Identities=19% Similarity=0.330 Sum_probs=174.8
Q ss_pred EEcCc-cCCchh-hHHHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeee----------hhhh-HHHHhcCcc
Q psy16087 7 QVNGK-WGLPDF-VCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSV----------YLPF-VYLQVNGKW 73 (252)
Q Consensus 7 ~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l----------~~p~-~~~~~~~~~ 73 (252)
+.+++ +.++.+ ..++.++++++.+++++||++|++++..+|++|+.+|++++|+ +.|+ ..+.+...|
T Consensus 22 ~~~p~~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W 101 (423)
T KOG4219|consen 22 EFEPGLFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEW 101 (423)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 44443 666655 4456788999999999999999999999999999999999984 4566 667778999
Q ss_pred ccccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCC--C
Q psy16087 74 GLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTP--D 151 (252)
Q Consensus 74 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~--~ 151 (252)
.+|...|++..++......+|+++|+|+|+|||+||.||++. ..+++..+.+++++|+.++++++|..+...... .
T Consensus 102 ~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~--r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~ 179 (423)
T KOG4219|consen 102 YFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQP--RPSRRSSKIIILLIWALALLLALPQLLYSSVEELYL 179 (423)
T ss_pred ccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhccc--CCCCcceeehhHHHHHHHHHHhccceeeeeeEEeec
Confidence 999999999999999999999999999999999999999994 389999999999999999999999987654421 1
Q ss_pred ---CCCcceeeec--------------cchhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHhccCCCCcccCCccc
Q psy16087 152 ---RVPDLCLFYS--------------SDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPGIV 214 (252)
Q Consensus 152 ---~~~~~C~~~~--------------~~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~ 214 (252)
.....|.... +.|...+.++.+++|++++...|..|.+++|.++. .+++. + ..
T Consensus 180 ~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~-----~gd~~----d-~~ 249 (423)
T KOG4219|consen 180 YDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRI-----PGDQQ----D-RK 249 (423)
T ss_pred cCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccC-----ccchh----c-hh
Confidence 2233444321 12677788899999999999999999999997531 11111 0 11
Q ss_pred hhhhhhhhhhccceeeeeccCCccccCC
Q psy16087 215 IENVAQTRRLAETTLVASSLVPSSLLDE 242 (252)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (252)
+++.+.+++..+..++++.-++.||.+-
T Consensus 250 ~~~~kak~K~vkmliiVV~~FaicWlPy 277 (423)
T KOG4219|consen 250 HEQLKAKKKVVKMLIIVVVIFAICWLPY 277 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 2344445556666667777778888764
No 2
>KOG4220|consensus
Probab=99.96 E-value=1.5e-28 Score=204.60 Aligned_cols=183 Identities=25% Similarity=0.476 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHhhhhheeeeeeccccccccccceeeee----------ehhhh-HHHHhcCccccccccchHhhHHHHH
Q psy16087 21 FYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLS----------VYLPF-VYLQVNGKWGLPDFVCDFYIAMDVM 89 (252)
Q Consensus 21 ~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~----------l~~p~-~~~~~~~~~~~~~~~C~~~~~~~~~ 89 (252)
+.++-+.+.++.++||++|++-+.-++++++..|||+++ +.||+ ..+.+.+.|..|...|.+...+.++
T Consensus 33 i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYv 112 (503)
T KOG4220|consen 33 IVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYV 112 (503)
T ss_pred eehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHH
Confidence 556677888999999999999999999999999999987 57888 8888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCC---CCCCcceeeecc---c
Q psy16087 90 CSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTP---DRVPDLCLFYSS---D 163 (252)
Q Consensus 90 ~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~---~~~~~~C~~~~~---~ 163 (252)
.+.+|+++++.|++|||+.|.+|+.|+...|.+|+..+|++.|++||++..|.++.|.... ......|..++- .
T Consensus 113 aSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp~ 192 (503)
T KOG4220|consen 113 ASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNPA 192 (503)
T ss_pred hhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCce
Confidence 9999999999999999999999999999999999999999999999999999888776522 334557886543 2
Q ss_pred hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHhccC
Q psy16087 164 FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARK 203 (252)
Q Consensus 164 ~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~~~~~~ 203 (252)
....-.+.-|.+|..+|+++|.+|+++.++|.+.....+.
T Consensus 193 iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~ 232 (503)
T KOG4220|consen 193 ITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQA 232 (503)
T ss_pred eehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4455567889999999999999999999999887765433
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.93 E-value=1.1e-26 Score=198.35 Aligned_cols=174 Identities=17% Similarity=0.182 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHHHHHhhhhheeeee--eccccccccccceeeeeeh---------hhhHHHHhcCccccccccchHhhHH
Q psy16087 18 VCDFYIAMDVMCSTSSIFNLVAISI--DRGKLCFTKFSNVFLLSVY---------LPFVYLQVNGKWGLPDFVCDFYIAM 86 (252)
Q Consensus 18 ~~~~~~~~~~~~~~g~~gN~~vi~v--~~~~~~~~~~~~~li~~l~---------~p~~~~~~~~~~~~~~~~C~~~~~~ 86 (252)
...+..+|++++++|++||.+|+++ .++++++|+++|++++|++ +|+......++|.+|+..|++..++
T Consensus 32 ~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~~~~w~fG~~lCk~~~~~ 111 (338)
T PHA03234 32 QILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNREALFNFNQAFCQCVLFI 111 (338)
T ss_pred HHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhHHHHHHHH
Confidence 4456789999999999999999884 4566777999999999843 4553333456799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCC-CCCcceeeecc---
Q psy16087 87 DVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPD-RVPDLCLFYSS--- 162 (252)
Q Consensus 87 ~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~-~~~~~C~~~~~--- 162 (252)
.....++|++++++||+|||+||++|.+++. ++++....+++.|+.+++.++|+++....... .....|....+
T Consensus 112 ~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~ 189 (338)
T PHA03234 112 YHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKK 189 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcch
Confidence 9999999999999999999999999998642 34445556677799999999998765433222 22246765432
Q ss_pred chhh------hhHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16087 163 DFII------YSSLSSFYIPCIIMVFLYYNIFKALSK 193 (252)
Q Consensus 163 ~~~~------~~~~~~~~lp~~~i~~~y~~I~~~lr~ 193 (252)
.+.. ...++.|++|+++|.++|.+|.+++++
T Consensus 190 ~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~ 226 (338)
T PHA03234 190 AYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHA 226 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1211 122335689999999999999999875
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.93 E-value=5.4e-26 Score=193.39 Aligned_cols=175 Identities=22% Similarity=0.340 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeee---------hhhhHHHHhcCccccccccchHhhHHHH
Q psy16087 18 VCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSV---------YLPFVYLQVNGKWGLPDFVCDFYIAMDV 88 (252)
Q Consensus 18 ~~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l---------~~p~~~~~~~~~~~~~~~~C~~~~~~~~ 88 (252)
+....+++.+++++|++||+++++++.+++++ +++|++++|+ .+|+......++|.+|+..|++..++..
T Consensus 28 ~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~~~~lP~~i~~~~~~w~~g~~~C~~~~~~~~ 106 (323)
T PHA02834 28 NYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLMLVFSFPFIIHNDLNEWIFGEFMCKLVLGVYF 106 (323)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcCCcchHHHhHHHHHH
Confidence 45678889999999999999998887776654 5789999884 4566333445679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCcceeeecc--ch--
Q psy16087 89 MCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSS--DF-- 164 (252)
Q Consensus 89 ~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~-- 164 (252)
.+..+|++++++||+|||.+|++|++++. .+.+++...++++|+.+++.++|+.+.+......+...|.+... +.
T Consensus 107 ~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~~~~~~~~~~~ 185 (323)
T PHA02834 107 VGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSW 185 (323)
T ss_pred HHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEeccCCccchHH
Confidence 99999999999999999999999998644 45577778889999999999999876544332233346764221 11
Q ss_pred ----hhhhHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy16087 165 ----IIYSSLSSFYIPCIIMVFLYYNIFKALSKR 194 (252)
Q Consensus 165 ----~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~ 194 (252)
.....++.|++|+++|+++|.+|++++|++
T Consensus 186 ~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~ 219 (323)
T PHA02834 186 SAFFNFEINIFGIVIPLIILIYCYSKILYTLKNC 219 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112236778999999999999999999764
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.91 E-value=6.6e-24 Score=185.82 Aligned_cols=177 Identities=20% Similarity=0.341 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeee---------hhhhHHHHhcCccccccccchHhhHHH
Q psy16087 17 FVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSV---------YLPFVYLQVNGKWGLPDFVCDFYIAMD 87 (252)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l---------~~p~~~~~~~~~~~~~~~~C~~~~~~~ 87 (252)
+...+..++.+++++|++||.++++++.+ +++|+++|++++|+ .+|++.....++|.+|+..|++..++.
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l~lPf~i~~~~~~W~fg~~~Ck~~~~l~ 175 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVIDFPFIIYNEFDQWIFGDFMCKVISASY 175 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhHHHHH
Confidence 34456778889999999999999877654 77899999999873 456644444578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccC-------CC---CCCcce
Q psy16087 88 VMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNT-------PD---RVPDLC 157 (252)
Q Consensus 88 ~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~-------~~---~~~~~C 157 (252)
....++|+++++++++|||+||+||.++++..+++++...++++|+.+++.++|+.+..... .. .....|
T Consensus 176 ~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C 255 (417)
T PHA02638 176 YIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQC 255 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCee
Confidence 99999999999999999999999999987777778888889999999999999998754321 11 113467
Q ss_pred eeeccc-----------hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy16087 158 LFYSSD-----------FIIYSSLSSFYIPCIIMVFLYYNIFKALSKR 194 (252)
Q Consensus 158 ~~~~~~-----------~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~ 194 (252)
....+. +.....++.+++|++++++||.+|+++++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~ 303 (417)
T PHA02638 256 TLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQL 303 (417)
T ss_pred eeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 643221 1222346678899999999999999999764
No 6
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.90 E-value=3.6e-23 Score=177.01 Aligned_cols=181 Identities=19% Similarity=0.389 Sum_probs=147.8
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeeeh---------hhh-HHHHhcCccccccccchHh
Q psy16087 14 LPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVY---------LPF-VYLQVNGKWGLPDFVCDFY 83 (252)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~---------~p~-~~~~~~~~~~~~~~~C~~~ 83 (252)
+.....++..++.+++++|++||++++++..++ ++|++.|+++.+++ .|. ......++|.+|+..|++.
T Consensus 36 ~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~~~~~~~~~~~~~~~C~~~ 114 (335)
T PHA03087 36 YDTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEFACKIV 114 (335)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCCCCcHHHHHH
Confidence 344566788888999999999999999999888 88999999998743 344 3345567899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCcceeeeccc
Q psy16087 84 IAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSD 163 (252)
Q Consensus 84 ~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 163 (252)
.++......+|+++++++|+|||++|++|++|+...+++++...++++|+.+++.++|+........+.....|......
T Consensus 115 ~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~~~~ 194 (335)
T PHA03087 115 SGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYNN 194 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEecCCC
Confidence 99999999999999999999999999999999888999999999999999999999998876655444445566644331
Q ss_pred ----h----hhhhHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q psy16087 164 ----F----IIYSSLSSFYIPCIIMVFLYYNIFKALSKRA 195 (252)
Q Consensus 164 ----~----~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~ 195 (252)
+ .+....+.+++|.++++++|.+|.+++++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~ 234 (335)
T PHA03087 195 KTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGIN 234 (335)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 1122355688999999999999999887653
No 7
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.89 E-value=6e-23 Score=179.12 Aligned_cols=176 Identities=16% Similarity=0.240 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhheeeeee-ccccc-cccccceeeeee---------hhhhHHHHhcCccc--cccccchHh
Q psy16087 17 FVCDFYIAMDVMCSTSSIFNLVAISID-RGKLC-FTKFSNVFLLSV---------YLPFVYLQVNGKWG--LPDFVCDFY 83 (252)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~gN~~vi~v~-~~~~~-~~~~~~~li~~l---------~~p~~~~~~~~~~~--~~~~~C~~~ 83 (252)
...+..+++.+++++|++||+++++++ .+++. .++.+|+|++|+ ++|+... ...|. .|+..|++.
T Consensus 31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~i~--~~~~~~~~g~~~Ck~~ 108 (409)
T PHA03235 31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIML--SNQGLLSGSVAGCKFA 108 (409)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHH--hcCccccCCCCeehhH
Confidence 344678888999999999999998874 33333 345667888774 3454221 23344 457899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccc----cC-C--CCCCcc
Q psy16087 84 IAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLN----NT-P--DRVPDL 156 (252)
Q Consensus 84 ~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~----~~-~--~~~~~~ 156 (252)
.++...+..+|++++++||+|||.+|++|.++.. .+++++...++++|+.++++++|+.+... .. . ......
T Consensus 109 ~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
T PHA03235 109 SLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYET 187 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcce
Confidence 9999999999999999999999999999987544 56888999999999999999998754321 11 1 123446
Q ss_pred eeeeccc---------hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q psy16087 157 CLFYSSD---------FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRA 195 (252)
Q Consensus 157 C~~~~~~---------~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~ 195 (252)
|...... |.....++.|++|+++|+++|.+|++++|++.
T Consensus 188 C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~ 235 (409)
T PHA03235 188 CVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRAS 235 (409)
T ss_pred eeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8653221 23344566789999999999999999998754
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.88 E-value=5.7e-24 Score=173.45 Aligned_cols=165 Identities=32% Similarity=0.570 Sum_probs=138.3
Q ss_pred hhheeeeeeccccccccccceeeeeeh----------hhh-HHHHhcCccccccccchHhhHHHHHHHHHHHHHHHHHHH
Q psy16087 35 FNLVAISIDRGKLCFTKFSNVFLLSVY----------LPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISI 103 (252)
Q Consensus 35 gN~~vi~v~~~~~~~~~~~~~li~~l~----------~p~-~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isi 103 (252)
||++++.++.+++++|++.|+++.+++ .|. ......+.|.+++..|++..++...+...|.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999988743 233 334444789999999999999999999999999999999
Q ss_pred HHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccC--CCCCCcceeeeccc-----hhhhhHHHHhhHH
Q psy16087 104 DRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNT--PDRVPDLCLFYSSD-----FIIYSSLSSFYIP 176 (252)
Q Consensus 104 dRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~--~~~~~~~C~~~~~~-----~~~~~~~~~~~lp 176 (252)
|||++|++|++|++..+++++...++++|+.+++.++|+.+..... .+.....|..+... +.....++.+++|
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p 160 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILP 160 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999997764442 22225689886543 5666678888999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHH
Q psy16087 177 CIIMVFLYYNIFKALSKRAKKAK 199 (252)
Q Consensus 177 ~~~i~~~y~~I~~~lr~~~~~~~ 199 (252)
+.++.++|.+|++.+|+++++.+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~~~~~ 183 (257)
T PF00001_consen 161 LIIILICYIRILRKLRRQRKRIK 183 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTC
T ss_pred eeeeeeecccccccccccccccc
Confidence 99999999999999998766443
No 9
>KOG2087|consensus
Probab=99.49 E-value=1.5e-13 Score=114.17 Aligned_cols=171 Identities=18% Similarity=0.332 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeeehhh-------h-H-----------HHHhcCccccccccch
Q psy16087 21 FYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLP-------F-V-----------YLQVNGKWGLPDFVCD 81 (252)
Q Consensus 21 ~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~~p-------~-~-----------~~~~~~~~~~~~~~C~ 81 (252)
+-+..-++...+++||++|+......+...+...+++.+++.. . . ++...-.|. +...|+
T Consensus 27 lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~-tg~gC~ 105 (363)
T KOG2087|consen 27 LRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ-TGLGCP 105 (363)
T ss_pred eeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh-hcCCCc
Confidence 3455567888999999999999877777777888888774322 1 1 112222343 456799
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCcceeeec
Q psy16087 82 FYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYS 161 (252)
Q Consensus 82 ~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~C~~~~ 161 (252)
+.+++..+.+-.|++.++.+++||++.|++|++..+....|....++...|+.+++.++.|+++... ......|....
T Consensus 106 ~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~--Y~~~~vClPL~ 183 (363)
T KOG2087|consen 106 VAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISS--YGASSVCLPLH 183 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCC--Ccccceeeecc
Confidence 9999999999999999999999999999999998777777779999999999999999999987333 22336677432
Q ss_pred c------chhhhhHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy16087 162 S------DFIIYSSLSSFYIPCIIMVFLYYNIFKALSKR 194 (252)
Q Consensus 162 ~------~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~ 194 (252)
. .|+...++....+.+++|+.+|.+++..+++.
T Consensus 184 ~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~ 222 (363)
T KOG2087|consen 184 IEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKG 222 (363)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecC
Confidence 1 14556667777899999999999999999874
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.34 E-value=1.5e-12 Score=107.27 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=106.5
Q ss_pred HHHhhhhheeeeeeccccccccccceeeeeehhh----------hHHHHhcCccccccccchHhhHHHHHHHHHHHHHHH
Q psy16087 30 STSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLP----------FVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLV 99 (252)
Q Consensus 30 ~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~~p----------~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~ 99 (252)
++|++||...+.++.++|++|+|.++++...++. .....+ +.-......|-...+...++.......++
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~-~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l 80 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF-RDHQITRSECFWQIFFYIFFQCAQSVIML 80 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH-hheeccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998765432 212222 22234556798888888888999999999
Q ss_pred HHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCcceeeecc---chhhhhHHHHhhHH
Q psy16087 100 AISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSS---DFIIYSSLSSFYIP 176 (252)
Q Consensus 100 ~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~C~~~~~---~~~~~~~~~~~~lp 176 (252)
+|++||++||+.|++|++..+.+..........+.+..... ++....+++....|..... +........ ..+.
T Consensus 81 ~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~C~pp~a~~~~~~~~~~~~-~~~i 156 (257)
T PF10320_consen 81 AIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTV---IGFLYRDDETIVICNPPLAFHGTASQIWSYS-NIII 156 (257)
T ss_pred HHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHh---heeEecCCcccccCCCccccCccHHHHHHHH-HHHH
Confidence 99999999999999999988877555554544444444332 2222223334567775422 222222222 2233
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q psy16087 177 CIIMVFLYYNIFKALSKRAK 196 (252)
Q Consensus 177 ~~~i~~~y~~I~~~lr~~~~ 196 (252)
-..+.+.|...+...+++++
T Consensus 157 nv~tvivY~i~~~~~~~k~~ 176 (257)
T PF10320_consen 157 NVITVIVYIITIIIFKRKSR 176 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 34455667777777776443
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.09 E-value=4.1e-10 Score=93.79 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=110.6
Q ss_pred HHHHHhhhhheeeeeeccccccccccceeeeeehhhh-----------HHHHhcCccccccccch-HhhHHHHHHHHHHH
Q psy16087 28 MCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPF-----------VYLQVNGKWGLPDFVCD-FYIAMDVMCSTSSI 95 (252)
Q Consensus 28 ~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~~p~-----------~~~~~~~~~~~~~~~C~-~~~~~~~~~~~~s~ 95 (252)
+.++|++.|.+++..+.+.+++|++-+.+-.+-+++. ......+.-...+.... +.+.....+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998888888666544422111 01111111112222233 34677777778899
Q ss_pred HHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhccccc-CCCC---------CCcceeeeccchh
Q psy16087 96 FNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNN-TPDR---------VPDLCLFYSSDFI 165 (252)
Q Consensus 96 ~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~-~~~~---------~~~~C~~~~~~~~ 165 (252)
.+-++||++|+.||..|.+|++..+.+.+..++++.|+.++....+..+..+. ...+ ..+.|.. +.
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~----~~ 158 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGN----YS 158 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccch----hh
Confidence 99999999999999999999999999999999999999999776555443222 1111 1123322 33
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHhH
Q psy16087 166 IYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKA 198 (252)
Q Consensus 166 ~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~ 198 (252)
..........-.+++..++..++.++++.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~ 191 (274)
T PF10328_consen 159 WYFDFYKNFILVIISNILNIITFIKLRKFRKKI 191 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 333343444556667778888888888765554
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.82 E-value=2.1e-08 Score=85.32 Aligned_cols=175 Identities=17% Similarity=0.212 Sum_probs=116.1
Q ss_pred HHHHHhhhhheeeeeeccccccccccceeeeeehhhh-------HHHHhcCcccc-ccccc------------hHhhHHH
Q psy16087 28 MCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPF-------VYLQVNGKWGL-PDFVC------------DFYIAMD 87 (252)
Q Consensus 28 ~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~~p~-------~~~~~~~~~~~-~~~~C------------~~~~~~~ 87 (252)
+.++|+++|++-+.+..|+..+.++.|.+++.+++-. +.......+.. .+..| .+...+.
T Consensus 6 ~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~ 85 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLS 85 (318)
T ss_pred EeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHH
Confidence 4578999999888888777766668899887643321 11111000000 12223 3455778
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccc--cccccchhhhhHHHHHHHHHHhhhchhcccccCCC----CCCcceeee-
Q psy16087 88 VMCSTSSIFNLVAISIDRYIAVTQPIKYA--KHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPD----RVPDLCLFY- 160 (252)
Q Consensus 88 ~~~~~~s~~~l~~isidRy~aI~~Pl~~~--~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~----~~~~~C~~~- 160 (252)
..+...|.+..++||+.|++++.+|++.+ ...+.+.+...+.++++.+++...+..+....... .....|...
T Consensus 86 ~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~ 165 (318)
T PF10324_consen 86 DIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFP 165 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeecc
Confidence 88888999999999999999999998853 45567778888888899999988888765444321 123446511
Q ss_pred ----ccc-------------------hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHhcc
Q psy16087 161 ----SSD-------------------FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAAR 202 (252)
Q Consensus 161 ----~~~-------------------~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~~~~~ 202 (252)
.+. +.....++.-++|.++..+......+++|+.++++++..
T Consensus 166 ~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~ 230 (318)
T PF10324_consen 166 ENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLS 230 (318)
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhccc
Confidence 000 111112334678999999999999999998877666554
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.70 E-value=2.5e-07 Score=78.10 Aligned_cols=189 Identities=12% Similarity=0.010 Sum_probs=121.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhheeeee---eccccccccccceeeeeehhh-----------hHHHHhcCccccccccch
Q psy16087 16 DFVCDFYIAMDVMCSTSSIFNLVAISI---DRGKLCFTKFSNVFLLSVYLP-----------FVYLQVNGKWGLPDFVCD 81 (252)
Q Consensus 16 ~~~~~~~~~~~~~~~~g~~gN~~vi~v---~~~~~~~~~~~~~li~~l~~p-----------~~~~~~~~~~~~~~~~C~ 81 (252)
....++.++..+..++|++||+.++.+ .+.|++.-+|.|..+.++++. .....+.......+..++
T Consensus 4 ~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF05296_consen 4 SLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYK 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHH
Confidence 345567788888999999999877666 455666677999988775432 122222233334566788
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc----hhhhhHHHHHHHHH--HhhhchhcccccCC--CCC
Q psy16087 82 FYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNR----RVWLTIVLVWAISV--AIGSPIVLGLNNTP--DRV 153 (252)
Q Consensus 82 ~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~----~~~~~i~~~W~~s~--~~~~~~~~~~~~~~--~~~ 153 (252)
...++..+....|.+..+++++--+..|.+.-+.--..=|+ -+..++.+.++.++ ....|......... ...
T Consensus 84 ~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~ 163 (303)
T PF05296_consen 84 IIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNN 163 (303)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccC
Confidence 88888888899999999999999999998655421111122 24456677777777 44444433221111 111
Q ss_pred Ccceee--eccc----hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHhccCC
Q psy16087 154 PDLCLF--YSSD----FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKP 204 (252)
Q Consensus 154 ~~~C~~--~~~~----~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~~~~~~~ 204 (252)
...... .... +......+..++|+++...+...+...++||.|+.++..+.
T Consensus 164 ~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g 220 (303)
T PF05296_consen 164 SRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATG 220 (303)
T ss_pred CCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 111111 1122 22222346778999999999999999999999988866543
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.39 E-value=7.4e-07 Score=74.53 Aligned_cols=118 Identities=19% Similarity=0.349 Sum_probs=84.2
Q ss_pred cchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCc-c
Q psy16087 79 VCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPI-KYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPD-L 156 (252)
Q Consensus 79 ~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl-~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~-~ 156 (252)
.-++.....+.+........+.+|+.||.||++|. ++++..++.+.+.++++-|+.+.+.++|.....+...+..+. .
T Consensus 74 ~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~~~ 153 (283)
T PF10323_consen 74 YAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEENMS 153 (283)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeeccccee
Confidence 35566667777788888999999999999999999 888889999999999999999999999865543332221111 1
Q ss_pred eeeecc--chhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q psy16087 157 CLFYSS--DFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAK 196 (252)
Q Consensus 157 C~~~~~--~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~ 196 (252)
-..+.+ ............+-.+..+++|..++..+|++.+
T Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k 195 (283)
T PF10323_consen 154 LFVDPEFIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK 195 (283)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111111 1222233444556677888999999999997653
No 15
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.26 E-value=1.6e-05 Score=63.02 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=82.0
Q ss_pred cccccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc------ccc---ccccchhhhhHHHHHHHHHHhhhchh
Q psy16087 73 WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIK------YAK---HKNNRRVWLTIVLVWAISVAIGSPIV 143 (252)
Q Consensus 73 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~------~~~---~~t~~~~~~~i~~~W~~s~~~~~~~~ 143 (252)
-..++..|..++++....-.++-+..++||+.-|+.|.+|-. ..+ ...+..++.+..+.|++...++ +
T Consensus 67 i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la---~ 143 (201)
T PF11710_consen 67 IIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLA---F 143 (201)
T ss_pred eeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHH---H
Confidence 334678999999999999999999999999999999999911 110 1111223333334444443332 3
Q ss_pred cc-cccCCCCCCcceeeeccc--hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHh
Q psy16087 144 LG-LNNTPDRVPDLCLFYSSD--FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKK 197 (252)
Q Consensus 144 ~~-~~~~~~~~~~~C~~~~~~--~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~ 197 (252)
.+ ......+....|....+. +.....-+--.+....+.+.|..++..+||+.|+
T Consensus 144 i~~~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 144 IGLGGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred hccccCcccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 22 122334456789876543 5666666566677888889999999999987654
No 16
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.99 E-value=8.8e-05 Score=62.39 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeeehhhh-------HHHHhcCccccccccchHhhHHHHHHH
Q psy16087 19 CDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPF-------VYLQVNGKWGLPDFVCDFYIAMDVMCS 91 (252)
Q Consensus 19 ~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~~p~-------~~~~~~~~~~~~~~~C~~~~~~~~~~~ 91 (252)
-....+..+..+++++|.++++......++.|++.+=++.-+++.. ........-..++..|.+++++..++.
T Consensus 7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~~~~~~s~lC~~Qafliq~f~ 86 (303)
T PF05462_consen 7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSPSAGENSFLCQFQAFLIQFFM 86 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHhHHHHHhh
Confidence 3455556666788899999999998888889999887765433321 111122223345778999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCcceeeeccchhhhhHHH
Q psy16087 92 TSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLS 171 (252)
Q Consensus 92 ~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 171 (252)
.++.+=.++||++=|..++++... .++.-....++.|.++++.+..++... ........|....+.-. .-+.
T Consensus 87 ~as~lWt~~iA~nly~~~~~~~~~----~~k~e~~Y~l~~wGiPli~a~i~l~~~--~~g~~G~WCWI~~~~~~--~r~~ 158 (303)
T PF05462_consen 87 LASFLWTLCIAFNLYLTFVKRYDE----LEKLEKYYHLVCWGIPLIPAVIPLIGN--DYGPAGNWCWIKPEWDV--WRFA 158 (303)
T ss_pred HHHHHHHHHHHHHhhheeEEcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCceeecCCCcc--hHHH
Confidence 999999999999999999875431 234445677888999998877665432 22333458987654211 1223
Q ss_pred HhhHHHHHH
Q psy16087 172 SFYIPCIIM 180 (252)
Q Consensus 172 ~~~lp~~~i 180 (252)
.|.+|+.++
T Consensus 159 lfY~Pl~ii 167 (303)
T PF05462_consen 159 LFYIPLWII 167 (303)
T ss_pred HHHHHHHHH
Confidence 456665443
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.48 E-value=0.00029 Score=59.58 Aligned_cols=178 Identities=15% Similarity=0.086 Sum_probs=109.8
Q ss_pred chhhHHHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeeehhhhHH----H-HhcCcc-ccccccchHh-----
Q psy16087 15 PDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVY----L-QVNGKW-GLPDFVCDFY----- 83 (252)
Q Consensus 15 ~~~~~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~~p~~~----~-~~~~~~-~~~~~~C~~~----- 83 (252)
|..+.++...+.+.+++-.+.++..+.++.++++.|++.+=++.-+.+.++. . ...|-. ..|...|..-
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~P~~~~i 108 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSYPRFIYI 108 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCCchHhhh
Confidence 6778888888888888888888888888888777788887777666655421 1 112221 2367778743
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHH--Hhhhchhcccc-c-----CCCCCC
Q psy16087 84 -IAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISV--AIGSPIVLGLN-N-----TPDRVP 154 (252)
Q Consensus 84 -~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~--~~~~~~~~~~~-~-----~~~~~~ 154 (252)
+.+...+-..+......++++|..-+..|........++++...+.+..+.++ .+..+|..... . +|.-.+
T Consensus 109 ~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~sw~fDP~i~~ 188 (313)
T PF10321_consen 109 MGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMSWFFDPMIFE 188 (313)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcceEecCccccC
Confidence 34555566788889999999999999998776666566665555444333332 22234433211 1 111100
Q ss_pred cceeeeccc-hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q psy16087 155 DLCLFYSSD-FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAK 196 (252)
Q Consensus 155 ~~C~~~~~~-~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~ 196 (252)
+ ..++ |.-.......++-...+..+|..+...++++.+
T Consensus 189 g----~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~ 227 (313)
T PF10321_consen 189 G----KSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSK 227 (313)
T ss_pred C----CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 1112 333334444555567778888888888887544
No 18
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.47 E-value=5.4e-05 Score=61.71 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=1.1
Q ss_pred HHHHHhhhhheeeeeeccccccccccceeeeeehhhh-H--HHHhcCcc-cccc------ccchHhhHHHHHHHHHHHHH
Q psy16087 28 MCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPF-V--YLQVNGKW-GLPD------FVCDFYIAMDVMCSTSSIFN 97 (252)
Q Consensus 28 ~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~~p~-~--~~~~~~~~-~~~~------~~C~~~~~~~~~~~~~s~~~ 97 (252)
...+++++-++++......|+.|+..+....|+++.. . .....+.. ...+ ..|...+.+...+..++..=
T Consensus 10 g~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f~W 89 (242)
T PF00002_consen 10 GCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFSPISTTNHCLCRAIAILLHYFFLASFFW 89 (242)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccccccccccccchhhhhHhHHHHHHHHHH
Confidence 3334444444444444444556666666666654433 1 11111111 1112 24999999999999999999
Q ss_pred HHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCcceeeeccchhhhhHHHHhhHHH
Q psy16087 98 LVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPC 177 (252)
Q Consensus 98 l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~lp~ 177 (252)
+.+.+++=|..+.++.. ..+++.+......|.++++........... ..+...|....+..... .+..|.
T Consensus 90 m~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~--~y~~~~CWl~~~~~~~~----~f~~P~ 159 (242)
T PF00002_consen 90 MLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAVNSD--GYGNDNCWLSNDWGFIW----AFVGPV 159 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeeeccc--ccccccccccCCCceEE----EEEecc
Confidence 99999999999988733 224555667777898888776655443311 22234675444323322 345666
Q ss_pred HHHHHHHHHH
Q psy16087 178 IIMVFLYYNI 187 (252)
Q Consensus 178 ~~i~~~y~~I 187 (252)
.++...+.-+
T Consensus 160 ~~~l~in~vi 169 (242)
T PF00002_consen 160 LIILLINIVI 169 (242)
T ss_dssp ----------
T ss_pred cceecccchh
Confidence 6655554443
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.36 E-value=0.0047 Score=52.73 Aligned_cols=141 Identities=16% Similarity=0.066 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeeehhhh--------------HHHHhc----Cccccccccch
Q psy16087 20 DFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPF--------------VYLQVN----GKWGLPDFVCD 81 (252)
Q Consensus 20 ~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~~p~--------------~~~~~~----~~~~~~~~~C~ 81 (252)
...++-.++.++|+..++..++...+++..|...-+++...++.+ ++.... -+...+...|-
T Consensus 18 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~ 97 (324)
T PF10292_consen 18 LSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCF 97 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHH
Confidence 344445566677777777776666666666666555544321111 111111 01123445677
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccC-CCCCCcceeee
Q psy16087 82 FYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNT-PDRVPDLCLFY 160 (252)
Q Consensus 82 ~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~-~~~~~~~C~~~ 160 (252)
+.-.....+...+..+.+++++||++|-.+.-+|.+. ++.-...+..+.|+++........ .+.. ++.....|...
T Consensus 98 ~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~~~~--~~~~~~~~~~~yC~~~ 174 (324)
T PF10292_consen 98 ILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLILYFVY--SDEDFPNERMYYCQAS 174 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHH--hhhhccCccceeeEEe
Confidence 7778888888899999999999999999999999763 222223333333444443222111 1112 23344568775
Q ss_pred ccc
Q psy16087 161 SSD 163 (252)
Q Consensus 161 ~~~ 163 (252)
..+
T Consensus 175 ~~~ 177 (324)
T PF10292_consen 175 SSS 177 (324)
T ss_pred cCC
Confidence 443
No 20
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.18 E-value=0.0034 Score=52.09 Aligned_cols=106 Identities=12% Similarity=0.001 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhhheeeeeeccccccccccceeeee----------ehh-hhHHHHhcCcccccc---ccchH-hhHHHH
Q psy16087 24 AMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLS----------VYL-PFVYLQVNGKWGLPD---FVCDF-YIAMDV 88 (252)
Q Consensus 24 ~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~----------l~~-p~~~~~~~~~~~~~~---~~C~~-~~~~~~ 88 (252)
+-.+...+....|...+..+..+|+ ++..|+-+.- +.. +...+.....|.... ....+ .+....
T Consensus 11 i~i~~s~~~~~iN~~lL~~if~~Kk-~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~~ 89 (273)
T PF10316_consen 11 IGIIFSIITCLINFYLLYSIFYSKK-KKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPSS 89 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhHH
Confidence 3334556778889877777765665 5555654432 111 111111111121111 11122 223333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHH
Q psy16087 89 MCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVL 130 (252)
Q Consensus 89 ~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~ 130 (252)
............||+||-+|+..|..|++...+--...++..
T Consensus 90 ~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~ 131 (273)
T PF10316_consen 90 NLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIII 131 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHH
Confidence 445667888999999999999999999876655444444333
No 21
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.07 E-value=0.0011 Score=55.00 Aligned_cols=118 Identities=18% Similarity=0.313 Sum_probs=66.5
Q ss_pred cccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCcc
Q psy16087 77 DFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDL 156 (252)
Q Consensus 77 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~ 156 (252)
+...++..++...+..+-..+...+|++|+-++..|.++++..++.. ...++++.+.++....+...........++..
T Consensus 78 ~~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~ 156 (275)
T PF02118_consen 78 PFFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNIFISPTYVVYDNGGF 156 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHHHccccEEEEECCce
Confidence 44566777788888888899999999999999999999987766443 34444445555444333332211111111111
Q ss_pred eeeecc----chhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q psy16087 157 CLFYSS----DFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRA 195 (252)
Q Consensus 157 C~~~~~----~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~ 195 (252)
.....+ +.........+.+..++.+.++....+++++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~ 199 (275)
T PF02118_consen 157 SYSYNDTVSWASLSIFSLIYFIIIIIITIITNIITYRRLRKLS 199 (275)
T ss_pred EEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111111 111222233334445556666777777776543
No 22
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=96.18 E-value=0.0043 Score=52.19 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhhhheeeeee-ccccccccccceeeeeehhhh-------------H-------HHHhcC-ccccccccch
Q psy16087 24 AMDVMCSTSSIFNLVAISID-RGKLCFTKFSNVFLLSVYLPF-------------V-------YLQVNG-KWGLPDFVCD 81 (252)
Q Consensus 24 ~~~~~~~~g~~gN~~vi~v~-~~~~~~~~~~~~li~~l~~p~-------------~-------~~~~~~-~~~~~~~~C~ 81 (252)
...+.+.+|++.|.+.++.+ ++.++.-+.--+++.|.++-. . .....| .-.+|+..|.
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~ 83 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFCF 83 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHHH
Confidence 45678889999998887765 444443344344444422111 0 000011 1223667788
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcc
Q psy16087 82 FYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLG 145 (252)
Q Consensus 82 ~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~ 145 (252)
....+...+...+.+++.+--.-||..+.++-. ++++....+.+.+..++.......+.
T Consensus 84 ~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~ 142 (292)
T PF10317_consen 84 FCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFS 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888888999999989999999997643 56677777788888887776655443
No 23
>KOG4193|consensus
Probab=96.10 E-value=0.014 Score=53.71 Aligned_cols=133 Identities=14% Similarity=0.220 Sum_probs=88.0
Q ss_pred ceeeeeehhhh---HHHHhcCccccccc--cchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhH
Q psy16087 54 NVFLLSVYLPF---VYLQVNGKWGLPDF--VCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTI 128 (252)
Q Consensus 54 ~~li~~l~~p~---~~~~~~~~~~~~~~--~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i 128 (252)
+....++++-+ -...+.+.|.-... .|+..+++..++..+..+=|..+++.=|..++.-++ ....++.....
T Consensus 355 ~~i~~~l~~~L~l~~l~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~ 431 (610)
T KOG4193|consen 355 TKIHINLCLCLFLAELLFLLGIDRTSTSVVLCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFR---SRPRRRKLLYS 431 (610)
T ss_pred chhHHHHHHHHHHHHHHHhcccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchHHHHHH
Confidence 44444544443 34445666665544 599999999999999999999999988886665443 23344444554
Q ss_pred HHHHHHHHHhhhchhcccccC--CCCCCcceeeeccchhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16087 129 VLVWAISVAIGSPIVLGLNNT--PDRVPDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSK 193 (252)
Q Consensus 129 ~~~W~~s~~~~~~~~~~~~~~--~~~~~~~C~~~~~~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~ 193 (252)
...|..+.+............ .+.....|..+.+...+.. |+.|+.+|+.++..++...-.
T Consensus 432 ~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~----F~GPv~~ii~~Ni~~Fv~t~~ 494 (610)
T KOG4193|consen 432 LYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWS----FLGPVTLIILVNIVMFVVTLK 494 (610)
T ss_pred HHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEE----EehHHHHHHHHHHHHHHHHHH
Confidence 688988877765554433332 2344455999877766554 778988888888666555543
No 24
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.00 E-value=0.01 Score=48.98 Aligned_cols=131 Identities=13% Similarity=0.191 Sum_probs=85.0
Q ss_pred ccccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccc----ccccchhhhhHHHHHHHHHHhhhchhc---c
Q psy16087 74 GLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVT-QPIKYAK----HKNNRRVWLTIVLVWAISVAIGSPIVL---G 145 (252)
Q Consensus 74 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~-~Pl~~~~----~~t~~~~~~~i~~~W~~s~~~~~~~~~---~ 145 (252)
.+++..||+..++.-+.-..|+-+...+|+ |.||+ .|-...+ ....+.....+...|+.-.+......+ +
T Consensus 42 ~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~ 119 (265)
T PF03402_consen 42 FFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIA 119 (265)
T ss_pred cCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEe
Confidence 368999999999999999999999999999 66776 5544321 123345666777789888776543222 1
Q ss_pred cccCCC----CCCcceeeeccchhh--hhHHH---HhhHHHHHHHHHHHHHHHHHHHhHHhHHhccCCCC
Q psy16087 146 LNNTPD----RVPDLCLFYSSDFII--YSSLS---SFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHL 206 (252)
Q Consensus 146 ~~~~~~----~~~~~C~~~~~~~~~--~~~~~---~~~lp~~~i~~~y~~I~~~lr~~~~~~~~~~~~~~ 206 (252)
...... .....|.....+... ....+ -=++.+..|..+...+...+.||+++.+.-++.+.
T Consensus 120 ~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~ 189 (265)
T PF03402_consen 120 TPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSL 189 (265)
T ss_pred cCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHHhhhhhheeeeeecccccccCcCCCC
Confidence 111111 123467654433221 11111 12456778888899999999999988887766544
No 25
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.72 E-value=0.31 Score=39.19 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=38.2
Q ss_pred cccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q psy16087 75 LPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKH 118 (252)
Q Consensus 75 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~ 118 (252)
.++..||.......+..+.+.+.-..+++||++|....-+|++.
T Consensus 80 I~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~ 123 (236)
T PF02175_consen 80 IDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT 123 (236)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence 35667888888888999999999999999999999998888663
No 26
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.64 E-value=0.093 Score=44.92 Aligned_cols=137 Identities=20% Similarity=0.243 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhhhheeeeeeccccccccccceee-eeehh-----------hh--HHHHhc-----CccccccccchHh
Q psy16087 23 IAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFL-LSVYL-----------PF--VYLQVN-----GKWGLPDFVCDFY 83 (252)
Q Consensus 23 ~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li-~~l~~-----------p~--~~~~~~-----~~~~~~~~~C~~~ 83 (252)
.+..++.+++.++....+-..+++.-..+.+-.++ .++.. .. ++..+. ....+.+..|...
T Consensus 25 ~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~~~ 104 (328)
T PF02117_consen 25 IFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSECFPY 104 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCceeee
Confidence 33444556666666666666665554444444433 22211 11 111111 1233456778888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCcceeeecc
Q psy16087 84 IAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSS 162 (252)
Q Consensus 84 ~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~C~~~~~ 162 (252)
.....++.....+.-+++++||-+|-..|-.+.+ .+......+.+.+-+.++ ....+..+++..++....|....+
T Consensus 105 ~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~-~~~~~g~~l~i~~li~s~--~~~~~i~~~~p~~gyv~~C~~~p~ 180 (328)
T PF02117_consen 105 YYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSK-KSYIIGIILSILVLILSF--ITGFIIYWDDPLDGYVPSCFYPPK 180 (328)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh-hhHHHHHHHHHHHHHHHH--HHeeEEEeCCCCccccccccCCCh
Confidence 8888888888899999999999999998866532 121222222122222222 222334444444566678886533
No 27
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=95.41 E-value=0.29 Score=41.42 Aligned_cols=177 Identities=12% Similarity=0.086 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhhhhheeeeee-ccccccccccceeeee-------------ehhhhHHHHhcCccccc------cccc
Q psy16087 21 FYIAMDVMCSTSSIFNLVAISID-RGKLCFTKFSNVFLLS-------------VYLPFVYLQVNGKWGLP------DFVC 80 (252)
Q Consensus 21 ~~~~~~~~~~~g~~gN~~vi~v~-~~~~~~~~~~~~li~~-------------l~~p~~~~~~~~~~~~~------~~~C 80 (252)
+...+-+++.+.++.|.++++.+ .+.++..+..++++.. +..|....-..+.+..| +..+
T Consensus 11 li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~f~i~~ 90 (303)
T PF10327_consen 11 LINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARYFGISS 90 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhcCCCch
Confidence 34455688899999998887664 5555566665555422 33333111112222222 1223
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCC------CCCC
Q psy16087 81 DFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTP------DRVP 154 (252)
Q Consensus 81 ~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~------~~~~ 154 (252)
+....+.......-.-.++.-=+-|+.+|.+..+.+. .++...........+..+.............. .++.
T Consensus 91 h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~ny 169 (303)
T PF10327_consen 91 HYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENY 169 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Confidence 3333333333333444455555689999999887433 44444444444444444443332222111100 0112
Q ss_pred cceee-----------eccch---hhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHhH
Q psy16087 155 DLCLF-----------YSSDF---IIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKA 198 (252)
Q Consensus 155 ~~C~~-----------~~~~~---~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~ 198 (252)
+.|.. +.+.. .....+.+.........+++..+++.+++.+++.
T Consensus 170 P~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i 227 (303)
T PF10327_consen 170 PEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI 227 (303)
T ss_pred CchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22221 11111 1222333444566777888888888887765544
No 28
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=95.31 E-value=0.017 Score=48.88 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=48.3
Q ss_pred HHHHHHhhhhheeeeeeccccc--cccccceeeeee-------------hhhhHH--------HHhcCccccccccchHh
Q psy16087 27 VMCSTSSIFNLVAISIDRGKLC--FTKFSNVFLLSV-------------YLPFVY--------LQVNGKWGLPDFVCDFY 83 (252)
Q Consensus 27 ~~~~~g~~gN~~vi~v~~~~~~--~~~~~~~li~~l-------------~~p~~~--------~~~~~~~~~~~~~C~~~ 83 (252)
+..+++++.|.+.+..+.++.+ ..+-.++ +..+ .-|... ....+.+..+....++.
T Consensus 7 ~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~L-m~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (307)
T PF10326_consen 7 IGFVLSLFLNSLLIYLILTKSPKSLGSYKYL-MIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCEEEE-EehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence 4567889999888777654332 3333333 3222 122210 00122233334444555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy16087 84 IAMDVMCSTSSIFNLVAISIDRYIAVTQPIKY 115 (252)
Q Consensus 84 ~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~ 115 (252)
..+...+...+...++.-=+.||.++++|-+.
T Consensus 86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~~l 117 (307)
T PF10326_consen 86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL 117 (307)
T ss_pred hhhhhhhHHHHHHHHHhHhhhheeeeccchhh
Confidence 55555555556566666666999999999864
No 29
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=93.88 E-value=0.71 Score=39.10 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=75.9
Q ss_pred cccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhccccc-----CCC
Q psy16087 77 DFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNN-----TPD 151 (252)
Q Consensus 77 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~-----~~~ 151 (252)
+..=++..++...+.+.+.+.-++.++-|-.-+..|-++++ ..++-....+..+.+.+++++.|.+...+. .|.
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~-i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf 178 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKK-ICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPF 178 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhH-HHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCC
Confidence 45567778889999999999999999999999999988644 444555666677777777777766543222 111
Q ss_pred CCCccee-ee--ccc-hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q psy16087 152 RVPDLCL-FY--SSD-FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRA 195 (252)
Q Consensus 152 ~~~~~C~-~~--~~~-~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~ 195 (252)
+-...-. .. ..+ ............-+..+++++...+.++|+.+
T Consensus 179 ~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 179 PFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1100000 00 111 12222344445567778888999999999865
No 30
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=92.72 E-value=5.8 Score=33.98 Aligned_cols=87 Identities=7% Similarity=0.167 Sum_probs=66.5
Q ss_pred ccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCc
Q psy16087 76 PDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPD 155 (252)
Q Consensus 76 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~ 155 (252)
+...|.+...+.+++..++..==+.+++.-|++....-..... .++....-.+.|.++.+..+..+.....+.++-.+
T Consensus 90 ~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i--~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltG 167 (328)
T PF01534_consen 90 ENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAI--EKKSSYFHLVAWGIPAVLTIAVLALRKVDGDELTG 167 (328)
T ss_pred CCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchh--hhhcchhhhHHhhhhHHHHHHHHHhcccccccccc
Confidence 3578999999999999999888888888889888765443332 35566678899999999888777666667777778
Q ss_pred ceeeeccch
Q psy16087 156 LCLFYSSDF 164 (252)
Q Consensus 156 ~C~~~~~~~ 164 (252)
.|..-..+.
T Consensus 168 iC~Vg~~~~ 176 (328)
T PF01534_consen 168 ICFVGNQNP 176 (328)
T ss_pred eeEEeCCCH
Confidence 898766553
No 31
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=92.70 E-value=0.17 Score=37.95 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcc
Q psy16087 85 AMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLG 145 (252)
Q Consensus 85 ~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~ 145 (252)
.+.+++.....+.-++|+++|-..|.+|.+...+.|.+|.++-+....+..+..-+.|.+.
T Consensus 49 L~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S 109 (153)
T PF03383_consen 49 LFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFS 109 (153)
T ss_pred eeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCC
Confidence 4555566677788899999999999999996668999999999988887777766656553
No 32
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=92.49 E-value=0.6 Score=36.73 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=31.8
Q ss_pred ccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy16087 76 PDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIK 114 (252)
Q Consensus 76 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~ 114 (252)
.-..|.+.--+...+........+++|+|||.-|+.-.|
T Consensus 113 tI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 113 TIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred EEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 457899888777777777777888999999999997655
No 33
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=89.85 E-value=2.2 Score=35.82 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhhhheeeeee-ccccc-ccccc-------------ceeeeeehh-----hhHHHHhcCccccccccch
Q psy16087 22 YIAMDVMCSTSSIFNLVAISID-RGKLC-FTKFS-------------NVFLLSVYL-----PFVYLQVNGKWGLPDFVCD 81 (252)
Q Consensus 22 ~~~~~~~~~~g~~gN~~vi~v~-~~~~~-~~~~~-------------~~li~~l~~-----p~~~~~~~~~~~~~~~~C~ 81 (252)
....-++.++++.-|...++.+ .+.++ +++.- |+++..+.. |.....-.|-...-.....
T Consensus 7 ~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~~ 86 (302)
T PF10318_consen 7 SIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPTP 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccChH
Confidence 3445566777777787665544 33333 33332 222222333 3322222232222245567
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcc
Q psy16087 82 FYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLG 145 (252)
Q Consensus 82 ~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~ 145 (252)
++.++...+......++..+=-.||.++..+-+. . ..++.-.......++.+.....|....
T Consensus 87 ~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~-~-~~~~~r~~~~~~~y~~~~~~~~~~~~~ 148 (302)
T PF10318_consen 87 IQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSR-S-LWKKIRIIFIIFNYIIAFLFFIPIYLS 148 (302)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc-c-cchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777777777778888888889999999966441 1 122223334444555565566665553
No 34
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=89.65 E-value=4.7 Score=33.40 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=66.8
Q ss_pred cchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCC-----CCC
Q psy16087 79 VCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTP-----DRV 153 (252)
Q Consensus 79 ~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~-----~~~ 153 (252)
.-.+..+...++.++-.++=..+|+.|..-...-.+-.+...+.-..+-+..+|+.++..-....-...... ...
T Consensus 89 ~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y 168 (305)
T PF04789_consen 89 LFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHY 168 (305)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccE
Confidence 445667888899999999999999999754442222233444566777778889888765433222111111 111
Q ss_pred Ccceeee--------ccchhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16087 154 PDLCLFY--------SSDFIIYSSLSSFYIPCIIMVFLYYNIFKALS 192 (252)
Q Consensus 154 ~~~C~~~--------~~~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr 192 (252)
.-.|... .....+...++.+.+|..+.++ |..+..++-
T Consensus 169 ~L~C~~~~~~v~~~~P~~IqiiE~ilQ~~IPi~Il~i-YiAIIiKI~ 214 (305)
T PF04789_consen 169 QLNCETCNSVVDISPPRGIQIIEIILQFGIPIFILVI-YIAIIIKII 214 (305)
T ss_pred EEEcCCCCeeEeeCCCCchhHHHHHHHHhHHHHHHHH-HHHHHHHHH
Confidence 1234322 1124567788899999876655 444444443
No 35
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=85.27 E-value=10 Score=32.96 Aligned_cols=35 Identities=31% Similarity=0.230 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q psy16087 83 YIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAK 117 (252)
Q Consensus 83 ~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~ 117 (252)
.+++.+-......+.+.++++||..|-...-.|.+
T Consensus 126 ~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk 160 (365)
T PF03125_consen 126 GGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEK 160 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666679999999999999999888866
No 36
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=76.39 E-value=21 Score=29.38 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-ccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCcceeeeccc
Q psy16087 85 AMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAK-HKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSD 163 (252)
Q Consensus 85 ~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~-~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 163 (252)
........+--+.+..+|++|+.--..|-.-+. ..+++.....+-..+...++-.............+..... .+...
T Consensus 87 ~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~~~~-~~~~~ 165 (267)
T PF10325_consen 87 FILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNESTEE-IETFS 165 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh-hhHHH
Confidence 444445566667899999999999999974322 2344555555555555554443322221111111111000 11111
Q ss_pred hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q psy16087 164 FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAK 196 (252)
Q Consensus 164 ~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~ 196 (252)
..........-+-+.+-...|.-|+..+||.++
T Consensus 166 ~~~~~~~~~~~~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 166 YIYVIFYIILNILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 111111111224455566788999999987654
No 37
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=68.07 E-value=44 Score=29.23 Aligned_cols=108 Identities=12% Similarity=0.240 Sum_probs=63.6
Q ss_pred ccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCCc
Q psy16087 76 PDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPD 155 (252)
Q Consensus 76 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~ 155 (252)
+..+|.....-..++..++.+=+++-|+|=|+.+.+--. ..+.+.--...|..+.++..--...... + +..
T Consensus 112 p~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ag------~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~-P--s~~ 182 (405)
T PF02101_consen 112 PAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSAG------RSTIWLYHMMAWGLPALLCAEGLAMLYY-P--SIS 182 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccCC------CcchhHHHHHHHHHHHHHHHhccceeec-C--CHH
Confidence 446898888777788888999999999999998864321 1223455567888777666432221111 1 122
Q ss_pred ceeeeccchhhhhHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy16087 156 LCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKR 194 (252)
Q Consensus 156 ~C~~~~~~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~ 194 (252)
.|..... ...--.+...+|++++.+.+=.+++..-+.
T Consensus 183 ~Ce~~l~--~alphYvttY~PlllVlvaNPiLy~~a~~~ 219 (405)
T PF02101_consen 183 RCESGLE--HALPHYVTTYIPLLLVLVANPILYIKAVRA 219 (405)
T ss_pred hhhhhhh--hcchhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3542211 112223345577777777666666655443
No 38
>PF13853 7tm_4: Olfactory receptor
Probab=67.64 E-value=0.34 Score=36.14 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHhhhchhcccccCC--C-CCCcceeee-----ccc------hhhhhHHHHhhHHHHHHHHHHHHHHHH
Q psy16087 125 WLTIVLVWAISVAIGSPIVLGLNNTP--D-RVPDLCLFY-----SSD------FIIYSSLSSFYIPCIIMVFLYYNIFKA 190 (252)
Q Consensus 125 ~~~i~~~W~~s~~~~~~~~~~~~~~~--~-~~~~~C~~~-----~~~------~~~~~~~~~~~lp~~~i~~~y~~I~~~ 190 (252)
..+.++.|..+++..++......... + .+.-.|+.. ..+ +...........|+.++.++|..|.+.
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a 83 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA 83 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence 34566788888877766554321111 1 111223210 111 233334455678999999999999998
Q ss_pred HHHhH
Q psy16087 191 LSKRA 195 (252)
Q Consensus 191 lr~~~ 195 (252)
+.|..
T Consensus 84 vlki~ 88 (144)
T PF13853_consen 84 VLKIP 88 (144)
T ss_pred hhccc
Confidence 88754
No 39
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=57.10 E-value=35 Score=22.03 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=20.2
Q ss_pred hhhhhHHHHhhHHHHHHH-HHHHHHHHHHHHhHHh
Q psy16087 164 FIIYSSLSSFYIPCIIMV-FLYYNIFKALSKRAKK 197 (252)
Q Consensus 164 ~~~~~~~~~~~lp~~~i~-~~y~~I~~~lr~~~~~ 197 (252)
|..+..++..+.|+.++. ++..+..+.+.+..++
T Consensus 20 ~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere 54 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAVLSWKLAKAIEKEERE 54 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667778866554 5556666666554433
No 40
>KOG4564|consensus
Probab=53.26 E-value=13 Score=33.40 Aligned_cols=143 Identities=13% Similarity=0.183 Sum_probs=78.6
Q ss_pred cccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCCCCCC
Q psy16087 75 LPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVP 154 (252)
Q Consensus 75 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~ 154 (252)
.+...|+....+...+..+..+=|.+=.+.=|-.+.-.... .+++-...+.+-|-+.+++..+-.+...... +
T Consensus 224 ~~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r~~~~---d 296 (473)
T KOG4564|consen 224 SNPVGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVRLYLE---D 296 (473)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHheeec---c
Confidence 35678999888877777777766666666555555433321 2455667777788877777766655442222 2
Q ss_pred cceeeeccc-hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHhccCCCCcccCCccchhhhhhhhhhccceeeeec
Q psy16087 155 DLCLFYSSD-FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPGIVIENVAQTRRLAETTLVASS 233 (252)
Q Consensus 155 ~~C~~~~~~-~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (252)
..|...+.. ....+.-.=.++++++=.+....|.+.+-++-+ .++. ......+|.+|.+++.++
T Consensus 297 ~~CW~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~KLr------~~~~---------~~~~~y~K~vKaTLvLIP 361 (473)
T KOG4564|consen 297 TGCWDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVTKLR------ASNA---------SETDQYRKLVKATLVLIP 361 (473)
T ss_pred ccccccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHhc------Cccc---------cchHHHHHHHHHHHHHHH
Confidence 257654442 111111111223333334444566666654211 1100 011226788888999999
Q ss_pred cCCccc
Q psy16087 234 LVPSSL 239 (252)
Q Consensus 234 ~~~~~~ 239 (252)
+++...
T Consensus 362 LfGI~~ 367 (473)
T KOG4564|consen 362 LFGIHY 367 (473)
T ss_pred HcCCee
Confidence 888743
No 41
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=43.21 E-value=33 Score=18.75 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhh
Q psy16087 16 DFVCDFYIAMDVMCSTSSIFN 36 (252)
Q Consensus 16 ~~~~~~~~~~~~~~~~g~~gN 36 (252)
......++++..++++|.+.|
T Consensus 6 ~~Vy~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 6 IFVYTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred EeehhhHHHHHHHHhccccCC
Confidence 345566777788888999877
No 42
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=42.22 E-value=37 Score=29.65 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=25.9
Q ss_pred cchhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHH
Q psy16087 162 SDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAK 199 (252)
Q Consensus 162 ~~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~~ 199 (252)
+++........-++|++.++..=.++.|.-+.|+++..
T Consensus 299 ~~~~~~i~~~la~i~~i~l~~~vvR~vR~~~~hr~~~~ 336 (374)
T PF01528_consen 299 ANLHTGIAINLAVIAIICLIMMVVRLVRAFLYHRRRST 336 (374)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34445555556667888888888888888888766443
No 43
>PHA03237 envelope glycoprotein M; Provisional
Probab=36.81 E-value=44 Score=29.67 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=22.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHH
Q psy16087 168 SSLSSFYIPCIIMVFLYYNIFKALSKRAKKAK 199 (252)
Q Consensus 168 ~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~~ 199 (252)
.-...-++|++.++..-.++.|...-|+++..
T Consensus 328 v~~~Laviail~l~m~vvRlvRa~~yHr~~~t 359 (424)
T PHA03237 328 CKLVLAIFAVIIVIMLVVRLVRACLYHRRRST 359 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445567777777777888888877766654
No 44
>CHL00024 psbI photosystem II protein I
Probab=31.21 E-value=23 Score=19.37 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhh
Q psy16087 16 DFVCDFYIAMDVMCSTSSIFN 36 (252)
Q Consensus 16 ~~~~~~~~~~~~~~~~g~~gN 36 (252)
.+....++++..++++|.+.|
T Consensus 6 i~Vy~vV~ffvsLFifGFlsn 26 (36)
T CHL00024 6 LFVYTVVIFFVSLFIFGFLSN 26 (36)
T ss_pred eeehhHHHHHHHHHHccccCC
Confidence 344566777778888888877
No 45
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=28.91 E-value=96 Score=21.44 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=18.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHhHHh
Q psy16087 172 SFYIPCIIMVFLYYNIFKALSKRAKKAKA 200 (252)
Q Consensus 172 ~~~lp~~~i~~~y~~I~~~lr~~~~~~~~ 200 (252)
.++.+.+++.+.|..++|-=|++++..++
T Consensus 11 ~ll~~vl~~~ifyFli~RPQrKr~K~~~~ 39 (97)
T COG1862 11 LLLPLVLIFAIFYFLIIRPQRKRMKEHQE 39 (97)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 34445666777888888777666555544
No 46
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.88 E-value=59 Score=21.26 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=17.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHh
Q psy16087 172 SFYIPCIIMVFLYYNIFKALSKRAKK 197 (252)
Q Consensus 172 ~~~lp~~~i~~~y~~I~~~lr~~~~~ 197 (252)
++++|+++.++.-+-++..++-.+++
T Consensus 5 fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45678877777777777777655443
No 47
>KOG4220|consensus
Probab=26.29 E-value=83 Score=28.04 Aligned_cols=37 Identities=43% Similarity=0.864 Sum_probs=32.6
Q ss_pred EcCccCCchhhHHHHHHHHHHHHHHhhhhheeeeeec
Q psy16087 8 VNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44 (252)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~g~~gN~~vi~v~~ 44 (252)
+-|+|.+|-..|.+|..+-=++--+-+.|+++|...+
T Consensus 92 lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDR 128 (503)
T KOG4220|consen 92 LMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDR 128 (503)
T ss_pred HHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeec
Confidence 3489999999999999999999999999999997743
No 48
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=25.22 E-value=1.4e+02 Score=19.78 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q psy16087 177 CIIMVFLYYNIFKALSKRAK 196 (252)
Q Consensus 177 ~~~i~~~y~~I~~~lr~~~~ 196 (252)
.+++++.|...++--+|+++
T Consensus 9 v~~~~i~yf~~~rpqkk~~k 28 (82)
T PF02699_consen 9 VIIFVIFYFLMIRPQKKQQK 28 (82)
T ss_dssp HHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhhheecHHHHHHH
Confidence 35556666666665554444
No 49
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.18 E-value=1.1e+02 Score=21.07 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=17.6
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHH
Q psy16087 168 SSLSSFYIPCIIMVFLYYNIFKALSKRAKKAK 199 (252)
Q Consensus 168 ~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~~ 199 (252)
++.+.++..++++.+.-.+|+..-|+-+.+++
T Consensus 18 ~FA~L~i~~FiILLIi~~~IW~~~r~~r~~MK 49 (121)
T PF10669_consen 18 FFAFLFIVVFIILLIITKSIWHDSRQVRIRMK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444445556666666777766655444443
No 50
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=24.73 E-value=34 Score=18.88 Aligned_cols=21 Identities=5% Similarity=-0.268 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhh
Q psy16087 16 DFVCDFYIAMDVMCSTSSIFN 36 (252)
Q Consensus 16 ~~~~~~~~~~~~~~~~g~~gN 36 (252)
.......+++.-++++|.+.|
T Consensus 6 i~Vy~vV~ffvsLFiFGflsn 26 (38)
T PRK02655 6 ISVYIVVFFFVGLFVFGFLSS 26 (38)
T ss_pred eeehhhHHHHHHHHHcccCCC
Confidence 344556677777888888776
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.22 E-value=26 Score=25.35 Aligned_cols=22 Identities=23% Similarity=-0.020 Sum_probs=6.6
Q ss_pred Hhhhhheeeeeecccccccccc
Q psy16087 32 SSIFNLVAISIDRGKLCFTKFS 53 (252)
Q Consensus 32 g~~gN~~vi~v~~~~~~~~~~~ 53 (252)
|++|=++.|....+|++++++.
T Consensus 76 GvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHHHhccCCC
Confidence 4444333333333333333433
No 52
>PF15102 TMEM154: TMEM154 protein family
Probab=21.24 E-value=28 Score=25.92 Aligned_cols=13 Identities=23% Similarity=0.628 Sum_probs=6.3
Q ss_pred HHHhhHHHHHHHH
Q psy16087 170 LSSFYIPCIIMVF 182 (252)
Q Consensus 170 ~~~~~lp~~~i~~ 182 (252)
++..++|++++++
T Consensus 58 iLmIlIP~VLLvl 70 (146)
T PF15102_consen 58 ILMILIPLVLLVL 70 (146)
T ss_pred EEEEeHHHHHHHH
Confidence 4455566444333
No 53
>COG3924 Predicted membrane protein [Function unknown]
Probab=21.23 E-value=1.8e+02 Score=18.80 Aligned_cols=26 Identities=8% Similarity=0.332 Sum_probs=19.2
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHH
Q psy16087 166 IYSSLSSFYIPCIIMVFLYYNIFKAL 191 (252)
Q Consensus 166 ~~~~~~~~~lp~~~i~~~y~~I~~~l 191 (252)
..+...++.+|++++.+++..|-..-
T Consensus 44 ~WFE~aCi~lPllFi~l~~~mvkfif 69 (80)
T COG3924 44 LWFEMACILLPLLFIVLCWAMVKFIF 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456678899999999988764433
No 54
>KOG4016|consensus
Probab=21.13 E-value=3.2e+02 Score=21.84 Aligned_cols=55 Identities=16% Similarity=0.362 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHhhhchhc-ccccCCCCCCcceeeeccc----hhhhhHHHHhhHHHHHH
Q psy16087 126 LTIVLVWAISVAIGSPIVL-GLNNTPDRVPDLCLFYSSD----FIIYSSLSSFYIPCIIM 180 (252)
Q Consensus 126 ~~i~~~W~~s~~~~~~~~~-~~~~~~~~~~~~C~~~~~~----~~~~~~~~~~~lp~~~i 180 (252)
++=++.|+++++......- ++....+..+..|.+..+. |.....++-|+.++..+
T Consensus 27 i~R~~~~lFsliVf~si~~eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~fl 86 (233)
T KOG4016|consen 27 ILRVVSWLFSLIVFGSIVNEGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFL 86 (233)
T ss_pred HHHHHHHHHHHhheeeeccccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHH
Confidence 4456789999877654432 3333445667789886543 66666555555554443
No 55
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.26 E-value=1.9e+02 Score=16.69 Aligned_cols=21 Identities=14% Similarity=0.255 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy16087 175 IPCIIMVFLYYNIFKALSKRA 195 (252)
Q Consensus 175 lp~~~i~~~y~~I~~~lr~~~ 195 (252)
+-+.+....=..|+.++++-+
T Consensus 13 Iil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 13 IILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333443444456666666543
No 56
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.04 E-value=1.2e+02 Score=20.94 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=26.3
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhheeeeeeccccccccccc
Q psy16087 14 LPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSN 54 (252)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~ 54 (252)
+.-+...++.+.+++..+|++.-+..+. ++..++|+..|
T Consensus 15 L~PWeIfLItLasVvvavGl~aGLfFcv--R~~lslrn~~~ 53 (106)
T PF14654_consen 15 LKPWEIFLITLASVVVAVGLFAGLFFCV--RNSLSLRNTFD 53 (106)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHh--hhccccccccc
Confidence 4556677777788888888887765554 55566666644
Done!