RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16087
(252 letters)
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 173 bits (440), Expect = 2e-51
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 20/219 (9%)
Query: 53 SNVFLLS----------VYLPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAI 101
+N F+ S +PF + W +F C+F+ ++DV+C T+SI L I
Sbjct: 75 TNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVI 134
Query: 102 SIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIG-SPIVLGLNNTPDRV------- 153
++DRY A+T P KY + + I++VW +S PI + +
Sbjct: 135 AVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAE 194
Query: 154 PDLCLFYSS-DFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPG 212
C F+++ + I SS+ SFY+P +IMVF+Y +F+ ++ + R +K
Sbjct: 195 ETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIY 254
Query: 213 IVIENVAQTRRLAETTLVASSLVPSSLLDEGPTCTGSGS 251
E T S S LD+ +G
Sbjct: 255 KDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGV 293
Score = 67.8 bits (165), Expect = 3e-13
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 7 QVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
+ W +F C+F+ ++DV+C T+SI L I++DR
Sbjct: 101 ILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 138
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 172 bits (437), Expect = 3e-51
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 53 SNVFLLS----------VYLPF--VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVA 100
+N ++S + +P+ G W CD ++ +DVM T+SI+NL A
Sbjct: 73 TNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCA 132
Query: 101 ISIDRYIAVTQPIKY---AKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLC 157
ISIDRY AV P+ Y + RRV L I VW ++ A+ P++ G N T D P +C
Sbjct: 133 ISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGD--PTVC 190
Query: 158 LFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKP 204
+ DF+IYSS+ SFY+P + V +Y I+ L +R +K
Sbjct: 191 SISNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLR 237
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 172 bits (436), Expect = 5e-51
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 17/216 (7%)
Query: 53 SNVFLLS----------VYLPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAI 101
+N FL S + V G W L VCD ++A+D + S +S+ NL+ I
Sbjct: 58 NNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLII 117
Query: 102 SIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLG------LNNTPDRVPD 155
S DRY VT+P+ Y + + + I W +S + +P +L + D
Sbjct: 118 SFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECY 177
Query: 156 LCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPGIVI 215
+ F ++ +++++FY+P IIM LY++I +A R + R +K
Sbjct: 178 IQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDT 237
Query: 216 ENVAQTRRLAETTLVASSLVPSSLLDEGPTCTGSGS 251
E T S S LD+ +G
Sbjct: 238 EGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGV 273
Score = 66.3 bits (161), Expect = 1e-12
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 6 LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
V G W L VCD ++A+D + S +S+ NL+ IS DR
Sbjct: 83 YTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDR 121
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 168 bits (427), Expect = 6e-50
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 17/216 (7%)
Query: 53 SNVFLLS----------VYLPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAI 101
N++++S V +P + + KW L +C F+++MD + ST+SIF++ +
Sbjct: 43 GNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFIL 102
Query: 102 SIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRV-----PDL 156
IDRY +V QP++Y K++ R TI+ W +S PI+ +
Sbjct: 103 CIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCE 162
Query: 157 CLFYSS-DFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPGIVI 215
FY F + +++ +FY+P ++M++ Y I+KA+ + + R +K
Sbjct: 163 TDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDT 222
Query: 216 ENVAQTRRLAETTLVASSLVPSSLLDEGPTCTGSGS 251
E T S S LD+ +G
Sbjct: 223 EGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGV 258
Score = 66.3 bits (161), Expect = 1e-12
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 6 LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
+ KW L +C F+++MD + ST+SIF++ + IDR
Sbjct: 68 YLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDR 106
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 169 bits (428), Expect = 8e-50
Identities = 51/225 (22%), Positives = 87/225 (38%), Gaps = 27/225 (12%)
Query: 53 SNVFLLS----------VYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAIS 102
+N F++S + +PF + ++ + C F ++ + SSIF+L+AI+
Sbjct: 56 TNYFVVSLAAADIAVGVLAIPF-AITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIA 114
Query: 103 IDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRV--------- 153
IDRYIA+ P++Y R I + W +S AIG +LG NN
Sbjct: 115 IDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGC 174
Query: 154 ---PDLCLFYSSD----FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHL 206
CLF + ++ + +P ++M+ +Y IF A ++ + R
Sbjct: 175 GEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEG 234
Query: 207 SEMKPGIVIENVAQTRRLAETTLVASSLVPSSLLDEGPTCTGSGS 251
+K E T S S LD+ +G
Sbjct: 235 LRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGV 279
Score = 63.6 bits (154), Expect = 7e-12
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 6 LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
+ ++ + C F ++ + SSIF+L+AI+IDR
Sbjct: 79 ITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDR 117
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 161 bits (409), Expect = 2e-47
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 27/197 (13%)
Query: 53 SNVFLLS----------VYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAIS 102
+N F++S + +PF + ++ + C F ++ + SSIF+L+AI+
Sbjct: 66 TNYFVVSLAAADIAVGVLAIPF-AITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIA 124
Query: 103 IDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRV--------- 153
IDRYIA+ P++Y R I + W +S AIG +LG NN
Sbjct: 125 IDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGC 184
Query: 154 ---PDLCLFYSSD----FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHL 206
CLF + ++ + +P ++M+ +Y IF A ++ + +
Sbjct: 185 GEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLN 244
Query: 207 SEMKPGIVIENVAQTRR 223
+K +N AQ +
Sbjct: 245 DNLKVIEKADNAAQVKD 261
Score = 64.3 bits (156), Expect = 4e-12
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 6 LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
+ ++ + C F ++ + SSIF+L+AI+IDR
Sbjct: 89 ITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDR 127
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 153 bits (387), Expect = 1e-43
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 27/192 (14%)
Query: 37 LVAISIDRGKLCFTKF---SNVFLLS----------VYLPF-VYLQVNGKWGLPDFVCDF 82
LV +I F + +N F+ S +PF + W +F C+F
Sbjct: 202 LVITAI----AKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEF 257
Query: 83 YIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGS-P 141
+ ++DV+C T+SI L I++DRY A+T P KY + + I++VW +S P
Sbjct: 258 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 317
Query: 142 IVLGLNNTPDRVPDLC--------LFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSK 193
I + + C F + + I SS+ SFY+P +IMVF+Y +F+ +
Sbjct: 318 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 377
Query: 194 RAKKAKAARKPH 205
+ +K +
Sbjct: 378 QLQKIDKSEGRF 389
Score = 63.8 bits (155), Expect = 6e-12
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 7 QVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
+ W +F C+F+ ++DV+C T+SI L I++DR
Sbjct: 243 ILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDR 280
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 140 bits (354), Expect = 3e-40
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 27/198 (13%)
Query: 37 LVAISIDRGKLCFTKF---SNVFLLS----------VYLPF-VYLQVNGKWGLPDFVCDF 82
LV +I + +N+F+ S + +PF L V G W F+C+
Sbjct: 31 LVIAAI----GSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCEL 86
Query: 83 YIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGS-P 141
+ ++DV+C T+SI L I+IDRY+A+T P +Y R + I VWAIS + P
Sbjct: 87 WTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP 146
Query: 142 IVLGLNNTPDRVPDLC--------LFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSK 193
I++ D C + + I SS+ SFYIP +IM+F+ +++ +
Sbjct: 147 IMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKE 206
Query: 194 RAKKAKAARKPHLSEMKP 211
+ +K A K S +
Sbjct: 207 QIRKIDRASKRKTSRVML 224
Score = 59.7 bits (145), Expect = 9e-11
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 7 QVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
V G W F+C+ + ++DV+C T+SI L I+IDR
Sbjct: 72 VVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDR 109
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 122 bits (306), Expect = 3e-32
Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 18/211 (8%)
Query: 10 GKWGLPDFVCDFYIAMDVMCSTSSIF----N-LVAISIDRGKLCFTKFSNVFLLS----- 59
GK + + V+ F N V ++I + K F + F+ +
Sbjct: 51 GKLNISADKENSIKLTSVVFILICCFIILENIFVLLTIWKTK-KFHRPMYYFIGNLALSD 109
Query: 60 -----VYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIK 114
Y + L + L + ++S+F+L+AI+I+RYI + + K
Sbjct: 110 LLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKM-K 168
Query: 115 YAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDR-VPDLCLFYSSDFIIYSSLSSF 173
NN R++L I W IS+ +G ++G N L I + F
Sbjct: 169 LHNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVF 228
Query: 174 YIPCIIMVFLYYNIFKALSKRAKKAKAARKP 204
+ + +V LY I+ + R
Sbjct: 229 TLLLLSIVILYCRIYSLVRTRNIFEMLRIDE 259
Score = 54.9 bits (131), Expect = 7e-09
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 17/135 (12%)
Query: 6 LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR--------------GKLCFTK 51
L + L + ++S+F+L+AI+I+R F
Sbjct: 122 LSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLL 181
Query: 52 FSNVFLLSV---YLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIA 108
S +++S+ LP + V Y ++ T+ L+ + Y
Sbjct: 182 ISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCR 241
Query: 109 VTQPIKYAKHKNNRR 123
+ ++ R
Sbjct: 242 IYSLVRTRNIFEMLR 256
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 98.5 bits (245), Expect = 7e-24
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 9/157 (5%)
Query: 56 FLLSVYLPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIK 114
L + LPF + G W + +C I++D +SIF L +S+DRYIAV P+K
Sbjct: 64 ALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK 123
Query: 115 YAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSD--------FII 166
+ R + V W +S AIG P++ + C S I
Sbjct: 124 ALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKI 183
Query: 167 YSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARK 203
+ +F +P +I+ Y + L + R
Sbjct: 184 CVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRI 220
Score = 38.1 bits (88), Expect = 0.002
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 8 VNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
+ G W + +C I++D +SIF L +S+DR
Sbjct: 78 LMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDR 114
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 92.7 bits (230), Expect = 8e-22
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 57 LLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYA 116
L++ + KW C Y + + SI + ISIDRY + +P+ +
Sbjct: 85 LVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAAS 144
Query: 117 KHKNNRRVWLTIVLVWAISVAIGSPIVLGLNN-TPDRVPDLCLF--YSSD-----FIIYS 168
K ++RR ++ I+ VW SV + G T + V C F S D I+
Sbjct: 145 KKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCM 204
Query: 169 SLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARK 203
+ F+ P +I+ F Y+NI ++S K+ A K
Sbjct: 205 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAK 239
Score = 36.8 bits (85), Expect = 0.004
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 8 VNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
KW C Y + + SI + ISIDR
Sbjct: 97 FLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDR 133
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 91.9 bits (228), Expect = 2e-21
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 6/154 (3%)
Query: 56 FLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKY 115
L + LPF + W +F+C + + SS++ L IS+DRY+A+
Sbjct: 95 LLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNS 154
Query: 116 AKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSD------FIIYSS 169
+ + + V VW ++ + P + N + +C + + F
Sbjct: 155 QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHI 214
Query: 170 LSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARK 203
+ +P I+++ Y I LS +
Sbjct: 215 MVGLILPGIVILSCYCIIISKLSHSGSNIFEMLR 248
Score = 35.3 bits (81), Expect = 0.016
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 12 WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
W +F+C + + SS++ L IS+DR
Sbjct: 112 WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDR 144
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 89.4 bits (222), Expect = 4e-21
Identities = 27/170 (15%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Query: 52 FSNVFLLSVYLPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVT 110
+++F++ +Y ++G + C+ + ++++LV ++I+RY+ V
Sbjct: 82 VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC 141
Query: 111 QPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNN----------TPDRVPDLCLFY 160
+P+ + + W +++A +P ++G + D
Sbjct: 142 KPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETN 200
Query: 161 SSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMK 210
+ F+IY + F IP I++ F Y + + + A + + + +E +
Sbjct: 201 NESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 250
Score = 37.0 bits (86), Expect = 0.004
Identities = 6/37 (16%), Positives = 18/37 (48%)
Query: 8 VNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
++G + C+ + ++++LV ++I+R
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIER 136
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 86.0 bits (213), Expect = 1e-19
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 56 FLLSVYLPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIK 114
LL+ LPF + G W + +C IA+D +S F L A+S+DRY+A+ PI+
Sbjct: 174 VLLT--LPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIR 231
Query: 115 YAKHKNNRRVWLTIVLVWAISVAIGSP--IVLGLNNTPDRV------PDLCLFYSSDFII 166
+ + + V +WA++ +G P I+ + + P ++ F I
Sbjct: 232 ALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAI 291
Query: 167 YSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARK 203
L SF +P +++ Y + + L + + K
Sbjct: 292 CIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSREK 328
Score = 37.9 bits (88), Expect = 0.002
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 8 VNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
+ G W + +C IA+D +S F L A+S+DR
Sbjct: 186 LLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDR 222
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 84.3 bits (209), Expect = 4e-19
Identities = 29/181 (16%), Positives = 71/181 (39%), Gaps = 23/181 (12%)
Query: 34 IFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTS 93
+ NL A + + F+ V + + + +W F C F+ + +
Sbjct: 71 LVNL-AFA-E---ASMAAFNTVVNFTYAV-------HNEWYYGLFYCKFHNFFPIAAVFA 118
Query: 94 SIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSP--IVLGLNNTPD 151
SI+++ A++ DRY+A+ P++ + + I ++W +++ + P P
Sbjct: 119 SIYSMTAVAFDRYMAIIHPLQ--PRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPS 176
Query: 152 RV-------PDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKP 204
RV Y + I ++ +++P +++ + Y + L ++ +
Sbjct: 177 RVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRY 236
Query: 205 H 205
H
Sbjct: 237 H 237
Score = 37.7 bits (88), Expect = 0.002
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 8 VNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDR 44
V+ +W F C F+ + +SI+++ A++ DR
Sbjct: 94 VHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDR 130
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 50.1 bits (120), Expect = 4e-09
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 92 TSSIFNLVAISIDRYIAVTQPIKYAKHKNNRR 123
TSSI +L AIS+DRY ++TQ I+Y + RR
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
Score = 28.5 bits (64), Expect = 0.17
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 31 TSSIFNLVAISIDR 44
TSSI +L AIS+DR
Sbjct: 1 TSSIVHLCAISLDR 14
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.004
Identities = 22/112 (19%), Positives = 29/112 (25%), Gaps = 48/112 (42%)
Query: 139 GSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKA 198
G + + L N ++ S LY L+ +KA
Sbjct: 363 GKQVEISLVNGAKN-----------LVVSGPPQS----------LY-----GLNLTLRKA 396
Query: 199 KA------ARKPHLSEMKPGIVIENVAQTRRLAETTLVASSLVP--SSLLDE 242
KA +R P SE K R L P S LL
Sbjct: 397 KAPSGLDQSRIPF-SERKLKFS------NRFLPVA-------SPFHSHLLVP 434
Score = 28.1 bits (62), Expect = 3.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 42 IDRGKLCFTK----FSNVFLLSVYLPF--VYLQ 68
+D+ ++ F++ FSN F L V PF L
Sbjct: 402 LDQSRIPFSERKLKFSNRF-LPVASPFHSHLLV 433
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.039
Identities = 47/277 (16%), Positives = 86/277 (31%), Gaps = 70/277 (25%)
Query: 4 YK--LQVNGKWGLPDFVCDFYIAMDVMCSTSSIFN-------------------LVAISI 42
YK L V FV +F DV SI + L +
Sbjct: 18 YKDILSVF----EDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 43 DRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYI-AMDVMCSTSSIFNLVAI 101
+ + KF L Y F+ + + P + YI D + + + +F +
Sbjct: 73 SKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 102 S-IDRYIAVTQPIKYAKHKNNRRV---------WLTIVLVWAISVAIGSP-----IVLGL 146
S + Y+ + Q + + N + W+ + + + V + L
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 147 NNTPDRVP----DLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAAR 202
N+P+ V L ++ S SS L + +A +R K+K
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-------LRIHSIQAELRRLLKSK--P 242
Query: 203 KPH-LSEMKPGIVIENVAQTRRLAET------TLVAS 232
+ L +V+ NV Q + L+ +
Sbjct: 243 YENCL------LVLLNV-QNAKAWNAFNLSCKILLTT 272
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.33
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 193 KRA-KKAKAARKPHLSEMKPGIVIE 216
K+A KK +A+ K + + P + I+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK 43
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase;
HET: MSE; 1.89A {Coxiella burnetii}
Length = 261
Score = 28.2 bits (64), Expect = 2.4
Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 31/80 (38%)
Query: 100 AISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSP---IVLGLNNTPDRVPDL 156
+++++ P+ +N ++ G+P + L + +PD+
Sbjct: 55 SLTLNA------PLHIKNLENGM---------ISVE---GTPTDCVHLAITGVLPEMPDM 96
Query: 157 CLFYS--------SDFIIYS 168
+ + D + YS
Sbjct: 97 VV--AGINAGPNLGDDVWYS 114
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO
HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A*
1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A*
2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A*
3abm_A* 3ag1_A* ...
Length = 514
Score = 27.9 bits (63), Expect = 3.7
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 144 LGLNNTPDRVPDLCLFYSSDFIIYSSLSSF--YIPCIIMVFLYYNIFKAL-SKR 194
LGL+ P R D Y + +++++SS +I ++ + + I++A SKR
Sbjct: 431 LGLSGMPRRYSD----YPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKR 480
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function;
1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A
1j9k_A* 1j9l_A*
Length = 247
Score = 27.4 bits (62), Expect = 4.2
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 27/80 (33%)
Query: 100 AISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSP---IVLGLNNTPDRVPDL 156
+I+I P+ K + RV ++ + G+P + L N D+ DL
Sbjct: 44 SITIHV------PLWMKKVFISERVV-----AYSTT---GTPADCVKLAYNVVMDKRVDL 89
Query: 157 CLFYS--------SDFIIYS 168
+ S I++S
Sbjct: 90 IV--SGVNRGPNMGMDILHS 107
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein,
stationary phase, phosph mononucleotidase, divalent
metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Length = 254
Score = 27.1 bits (61), Expect = 5.1
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 30/80 (37%)
Query: 100 AISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSP---IVLGLNNTPDRVPDL 156
+++++ ++ N + G+P + LG+N PD+
Sbjct: 45 SLTLES------SLRTFTFDNGD--------IAVQM---GTPTDCVYLGVNALMRPRPDI 87
Query: 157 CLFYS--------SDFIIYS 168
+ S D +IYS
Sbjct: 88 VV--SGINAGPNLGDDVIYS 105
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 26.5 bits (59), Expect = 9.2
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 4/18 (22%)
Query: 132 WAISVAIGSPIVLGLNNT 149
+ + AIGSP L NT
Sbjct: 122 FVV--AIGSP--FSLQNT 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.428
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,799,607
Number of extensions: 217738
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 45
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)