RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16087
         (252 letters)



>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 26.1 bits (57), Expect = 4.4
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 143 VLGLNNTPDRVPD----LCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKA 198
             GL N P R           +++  ++++ L+   +   +++F+ Y +F  L  R +K 
Sbjct: 428 WAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFI-YGLFSVLLSRERKP 486

Query: 199 KAARKP 204
           + A  P
Sbjct: 487 ELAEAP 492


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 926,677
Number of extensions: 41087
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 4
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.2 bits)