BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16095
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VWB|A Chain A, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis.
pdb|2VWB|B Chain B, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis
Length = 535
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 121/179 (67%), Gaps = 7/179 (3%)
Query: 64 SQNQRGKGSIGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSR 123
+ + G G + +L N Y PP +G PRE A HH +++KEA + V +
Sbjct: 9 TAEKTGVGIVTSDGEVLFNKTIMY-KPPKQGINPREAADHHAETFPKLIKEAFEV--VDK 65
Query: 124 DDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTV 183
++ID+I +++GPG+G L V A VARTL+L KPI+GVNHCI HIE+G+ T+ E+P
Sbjct: 66 NEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTTEAEDPLT 125
Query: 184 LYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP-GYNIEQMAKK 241
LYVSGGNTQVIAY ++YR+FGET+DIAVGNCLD+FAR + L P P G IE++A+K
Sbjct: 126 LYVSGGNTQVIAYVSKKYRVFGETLDIAVGNCLDQFARYVNL---PHPGGPYIEELARK 181
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKS---KVLEE 58
+I +G EG+A K G+GIV T +L N Y PP +G PRE A HH K+++E
Sbjct: 1 MICLGLEGTAEKTGVGIV-TSDGEVLFNKTIMY-KPPKQGINPREAADHHAETFPKLIKE 58
Query: 59 KFDYLSQNQ 67
F+ + +N+
Sbjct: 59 AFEVVDKNE 67
>pdb|3ENH|A Chain A, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|B Chain B, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3EN9|A Chain A, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
pdb|3EN9|B Chain B, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
Length = 540
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 121/179 (67%), Gaps = 7/179 (3%)
Query: 64 SQNQRGKGSIGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSR 123
+ + G G + +L N Y PP +G PRE A HH +++KEA + V +
Sbjct: 14 TAEKTGVGIVTSDGEVLFNKTIMY-KPPKQGINPREAADHHAETFPKLIKEAFEV--VDK 70
Query: 124 DDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTV 183
++ID+I +++GPG+G L V A VARTL+L KPI+GVNHCI HIE+G+ T+ E+P
Sbjct: 71 NEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTTEAEDPLT 130
Query: 184 LYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP-GYNIEQMAKK 241
LYVSGGNTQVIAY ++YR+FGET+DIAVGNCLD+FAR + L P P G IE++A+K
Sbjct: 131 LYVSGGNTQVIAYVSKKYRVFGETLDIAVGNCLDQFARYVNL---PHPGGPYIEELARK 186
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKS---KVLEE 58
+I +G EG+A K G+GIV T +L N Y PP +G PRE A HH K+++E
Sbjct: 6 MICLGLEGTAEKTGVGIV-TSDGEVLFNKTIMY-KPPKQGINPREAADHHAETFPKLIKE 63
Query: 59 KFDYLSQNQ 67
F+ + +N+
Sbjct: 64 AFEVVDKNE 72
>pdb|2IVN|A Chain A, Structure Of Up1 Protein
pdb|2IVO|A Chain A, Structure Of Up1 Protein
pdb|2IVO|B Chain B, Structure Of Up1 Protein
pdb|2IVO|C Chain C, Structure Of Up1 Protein
pdb|2IVO|D Chain D, Structure Of Up1 Protein
pdb|2IVP|A Chain A, Structure Of Up1 Protein
Length = 330
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 113/169 (66%), Gaps = 4/169 (2%)
Query: 73 IGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYT 132
I ++ +L+N T T G G P+E A+HH + +L++AL +A VS DDIDVI ++
Sbjct: 17 IVSEDKVLANVFDTLTTEKG-GIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFS 75
Query: 133 KGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQ 192
+GPG+G L VVA AR LA+ + KPIVGVNHCI H+E+ + + ++P LYVSGGNTQ
Sbjct: 76 QGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITK-MFGVKDPVGLYVSGGNTQ 134
Query: 193 VIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYNIEQMAKK 241
V+A RYR+FGET+DI +GN +D FAR L L P +E++A+K
Sbjct: 135 VLALEGGRYRVFGETLDIGIGNAIDVFARELGLGFPGGP--KVEKLAEK 181
>pdb|3ENO|A Chain A, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
pdb|3ENO|B Chain B, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
Length = 334
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 90 PPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVAR 149
P G P + A HH + V+ AL++AK+S DID+I ++ GPG+ L V A AR
Sbjct: 38 PKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFSMGPGLAPSLRVTATAAR 97
Query: 150 TLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVIAYSRQRYRIFGETID 209
T+++L KPI+GVNH +GHIE+GR VT +P +LYVSGGNTQVIA+ RYR+ GET+D
Sbjct: 98 TISVLTGKPIIGVNHPLGHIEIGRRVTGAIDPVMLYVSGGNTQVIAHVNGRYRVLGETLD 157
Query: 210 IAVGNCLDRFARVLKLSNDPSPGY-NIEQMAKK 241
I +GN +D+FAR + P PG IE++A K
Sbjct: 158 IGIGNMIDKFAREAGI---PFPGGPEIEKLAMK 187
>pdb|2GEL|A Chain A, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEL|G Chain G, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEM|A Chain A, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
pdb|2GEM|B Chain B, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
Length = 231
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 97 PRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWN 156
PRE H ++L +++E L + S ++ID + + +GPG + + +A+ LAL N
Sbjct: 31 PRE----HTQRILPMVQEILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGAN 86
Query: 157 KPIVGVN 163
P++GV+
Sbjct: 87 LPMIGVS 93
>pdb|3R6M|A Chain A, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
pdb|3R6M|B Chain B, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
pdb|3R6M|C Chain C, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
pdb|3R6M|D Chain D, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
Length = 213
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 102 QHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVG 161
+ H KVL ++ E L +A ++ D+D + + +GPG + + +A+ LA P++G
Sbjct: 33 RDHTKKVLPMVDEVLKEAGLTLQDLDALAFGRGPGSFTGVRIGIGIAQGLAFGAELPMIG 92
Query: 162 VN 163
V+
Sbjct: 93 VS 94
>pdb|1OKJ|A Chain A, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|B Chain B, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|C Chain C, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|D Chain D, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
Length = 251
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 97 PRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWN 156
PRE H ++L ++++ L + S DI+ + Y +GPG + + +A+ LAL
Sbjct: 51 PRE----HTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAE 106
Query: 157 KPIVGVN 163
P++GV+
Sbjct: 107 LPMIGVS 113
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGP 140
KS+V V++ ALD A++ DIDVI Y G P
Sbjct: 85 KSRVPAVIQRALDDAELLATDIDVIIYVSCTGFMMP 120
>pdb|1U4R|A Chain A, Crystal Structure Of Human Rantes Mutant 44-Aana-47
pdb|1U4R|B Chain B, Crystal Structure Of Human Rantes Mutant 44-Aana-47
pdb|1U4R|C Chain C, Crystal Structure Of Human Rantes Mutant 44-Aana-47
pdb|1U4R|D Chain D, Crystal Structure Of Human Rantes Mutant 44-Aana-47
Length = 68
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 177 KCENPTVLYVSGGNTQVIAYSRQRY 201
KC NP V++V+ N QV A +++
Sbjct: 33 KCSNPAVVFVTAANAQVCANPEKKW 57
>pdb|3BPL|B Chain B, Crystal Structure Of The Il4-Il4r-Common Gamma Ternary
Complex
pdb|3BPN|B Chain B, Crystal Structure Of The Il4-Il4r-Il13ra Ternary Complex
pdb|3BPO|B Chain B, Crystal Structure Of The Il13-Il4r-Il13ra Ternary Complex
Length = 205
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 135 PGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENP 181
P G LTV V+ TL L W+ P N+ H+ N+ +P
Sbjct: 101 PRAPGNLTVHTQVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDP 147
>pdb|1IAR|B Chain B, Interleukin-4 RECEPTOR ALPHA CHAIN COMPLEX
Length = 207
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 135 PGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENP 181
P G LTV V+ TL L W+ P N+ H+ N+ +P
Sbjct: 98 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDP 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,654,608
Number of Sequences: 62578
Number of extensions: 312584
Number of successful extensions: 668
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 20
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)