Query psy16095
Match_columns 241
No_of_seqs 294 out of 2037
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:45:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0533 QRI7 Metal-dependent p 100.0 1.4E-60 3E-65 440.6 19.1 182 2-241 1-187 (342)
2 PTZ00340 O-sialoglycoprotein e 100.0 1.7E-56 3.6E-61 416.4 19.9 183 2-241 1-186 (345)
3 KOG2708|consensus 100.0 1.2E-51 2.7E-56 365.2 18.2 186 1-241 1-186 (336)
4 TIGR00329 gcp_kae1 metallohydr 100.0 2.7E-48 5.8E-53 354.8 19.0 179 5-240 1-185 (305)
5 PRK09605 bifunctional UGMP fam 100.0 4.7E-48 1E-52 374.4 20.3 181 2-240 1-182 (535)
6 PRK14878 UGMP family protein; 100.0 4.7E-48 1E-52 356.1 19.3 177 5-240 1-178 (323)
7 TIGR03722 arch_KAE1 universal 100.0 1.2E-47 2.6E-52 352.6 19.2 178 5-240 1-179 (322)
8 PRK09604 UGMP family protein; 100.0 1.4E-46 3.1E-51 347.4 19.6 182 2-240 1-187 (332)
9 KOG2707|consensus 100.0 4.8E-47 1E-51 350.1 15.2 184 3-240 33-225 (405)
10 TIGR03723 bact_gcp putative gl 100.0 2.8E-46 6E-51 343.4 19.2 180 4-240 1-186 (314)
11 PF00814 Peptidase_M22: Glycop 100.0 2.7E-42 5.9E-47 310.6 13.0 161 78-241 1-164 (268)
12 TIGR03725 bact_YeaZ universal 99.9 1.7E-24 3.6E-29 187.3 14.5 94 99-195 28-121 (202)
13 COG1214 Inactive homolog of me 99.9 1E-23 2.3E-28 185.6 11.6 126 2-195 1-126 (220)
14 COG2192 Predicted carbamoyl tr 99.5 7.4E-14 1.6E-18 136.3 13.7 126 101-226 34-188 (555)
15 TIGR03286 methan_mark_15 putat 96.2 0.19 4.2E-06 48.7 15.0 110 104-226 177-290 (404)
16 TIGR00241 CoA_E_activ CoA-subs 96.1 0.14 3.1E-06 45.4 12.8 104 105-226 34-140 (248)
17 PF02543 CmcH_NodU: Carbamoylt 96.0 0.012 2.7E-07 55.7 5.8 57 170-226 1-66 (360)
18 TIGR00143 hypF [NiFe] hydrogen 95.9 0.046 9.9E-07 56.3 9.9 69 108-188 401-471 (711)
19 COG1924 Activator of 2-hydroxy 95.5 0.54 1.2E-05 45.3 14.4 103 110-226 174-278 (396)
20 TIGR03192 benz_CoA_bzdQ benzoy 95.3 0.67 1.5E-05 43.1 14.0 104 107-226 69-175 (293)
21 PRK00039 ruvC Holliday junctio 94.2 0.33 7.2E-06 41.3 8.5 22 1-22 1-22 (164)
22 COG2971 Predicted N-acetylgluc 94.0 1.1 2.4E-05 42.0 12.2 34 105-138 48-81 (301)
23 TIGR02261 benz_CoA_red_D benzo 92.9 3.9 8.5E-05 37.5 13.8 101 108-226 44-147 (262)
24 COG0068 HypF Hydrogenase matur 92.7 0.35 7.7E-06 49.8 7.3 71 106-188 434-507 (750)
25 PLN02377 3-ketoacyl-CoA syntha 92.0 0.38 8.1E-06 47.9 6.4 38 99-136 166-204 (502)
26 TIGR00744 ROK_glcA_fam ROK fam 90.4 5.2 0.00011 36.1 11.8 67 104-171 36-113 (318)
27 PF00370 FGGY_N: FGGY family o 90.0 2.4 5.3E-05 36.9 9.1 37 100-136 44-81 (245)
28 PF02801 Ketoacyl-synt_C: Beta 86.7 0.79 1.7E-05 36.1 3.4 65 106-171 25-93 (119)
29 PRK00047 glpK glycerol kinase; 86.1 4.1 8.8E-05 39.7 8.7 34 103-136 52-86 (498)
30 PRK08304 stage V sporulation p 86.0 2.5 5.5E-05 40.1 6.9 52 105-163 57-108 (337)
31 CHL00203 fabH 3-oxoacyl-acyl-c 86.0 1.4 3E-05 40.4 5.1 48 102-158 222-269 (326)
32 PF01869 BcrAD_BadFG: BadF/Bad 85.5 26 0.00055 31.1 16.5 108 105-224 41-153 (271)
33 PLN02192 3-ketoacyl-CoA syntha 85.2 1.7 3.7E-05 43.4 5.7 38 99-136 170-208 (511)
34 TIGR01312 XylB D-xylulose kina 84.5 4.6 0.0001 38.7 8.1 38 100-137 42-80 (481)
35 PRK13317 pantothenate kinase; 84.5 30 0.00065 31.7 13.1 88 123-223 45-137 (277)
36 cd00529 RuvC_resolvase Hollida 84.4 8 0.00017 32.1 8.6 20 3-22 1-20 (154)
37 TIGR02845 spore_V_AD stage V s 83.6 4.6 9.9E-05 38.3 7.4 53 104-163 50-102 (327)
38 PRK04123 ribulokinase; Provisi 83.4 6.5 0.00014 38.8 8.9 29 105-133 59-87 (548)
39 PRK09698 D-allose kinase; Prov 83.3 11 0.00024 33.8 9.7 62 105-170 44-119 (302)
40 PLN02295 glycerol kinase 82.9 6.8 0.00015 38.4 8.7 35 102-136 46-85 (512)
41 PRK10939 autoinducer-2 (AI-2) 82.9 8.4 0.00018 37.8 9.3 35 102-136 51-86 (520)
42 PLN02932 3-ketoacyl-CoA syntha 82.6 2.4 5.2E-05 42.0 5.4 35 99-133 142-177 (478)
43 TIGR01315 5C_CHO_kinase FGGY-f 82.2 7.8 0.00017 38.4 8.9 32 103-134 47-78 (541)
44 COG1069 AraB Ribulose kinase [ 81.5 4.8 0.0001 40.5 7.0 78 2-132 3-80 (544)
45 PTZ00294 glycerol kinase-like 81.2 11 0.00025 36.7 9.5 34 103-136 49-85 (504)
46 COG0554 GlpK Glycerol kinase [ 80.6 6 0.00013 39.4 7.3 33 104-136 53-85 (499)
47 COG0533 QRI7 Metal-dependent p 80.3 0.78 1.7E-05 43.6 1.1 38 28-65 25-67 (342)
48 PRK13311 N-acetyl-D-glucosamin 80.2 13 0.00028 32.8 8.9 62 108-171 39-112 (256)
49 COG1940 NagC Transcriptional r 80.2 45 0.00098 30.1 13.2 107 1-173 5-124 (314)
50 PF01890 CbiG_C: Cobalamin syn 79.7 3.5 7.6E-05 33.2 4.6 84 105-195 14-107 (121)
51 TIGR01311 glycerol_kin glycero 79.6 11 0.00024 36.6 8.9 34 103-136 48-82 (493)
52 COG1070 XylB Sugar (pentulose 79.1 14 0.0003 36.3 9.4 35 103-137 52-87 (502)
53 PF00108 Thiolase_N: Thiolase, 78.6 2.9 6.3E-05 37.7 4.2 59 106-164 28-86 (264)
54 PRK03011 butyrate kinase; Prov 78.3 21 0.00046 34.0 10.0 55 110-164 52-129 (358)
55 PLN02854 3-ketoacyl-CoA syntha 78.1 4.4 9.6E-05 40.6 5.6 37 99-135 182-219 (521)
56 PRK07027 cobalamin biosynthesi 77.8 5.7 0.00012 32.2 5.3 51 106-163 17-67 (126)
57 PRK07204 3-oxoacyl-(acyl carri 77.7 3.4 7.3E-05 37.7 4.4 46 105-159 229-274 (329)
58 PF08392 FAE1_CUT1_RppA: FAE1/ 76.5 3.4 7.4E-05 38.5 4.1 36 99-134 77-113 (290)
59 PLN00415 3-ketoacyl-CoA syntha 76.1 7.5 0.00016 38.5 6.5 35 101-135 130-165 (466)
60 PRK09557 fructokinase; Reviewe 75.5 28 0.00062 31.3 9.8 30 144-173 85-114 (301)
61 PRK12879 3-oxoacyl-(acyl carri 75.4 5.5 0.00012 36.0 5.1 45 105-158 224-268 (325)
62 PRK15027 xylulokinase; Provisi 75.1 18 0.00039 35.1 8.9 32 103-136 47-79 (484)
63 PF02075 RuvC: Crossover junct 74.9 7.9 0.00017 32.1 5.5 20 4-23 1-20 (149)
64 PRK08963 fadI 3-ketoacyl-CoA t 74.9 4.7 0.0001 38.9 4.7 56 105-164 30-89 (428)
65 PRK06366 acetyl-CoA acetyltran 74.4 4.6 0.0001 38.4 4.5 33 102-134 24-56 (388)
66 PRK08235 acetyl-CoA acetyltran 74.3 4.1 8.8E-05 38.9 4.1 59 105-164 27-86 (393)
67 PRK06205 acetyl-CoA acetyltran 74.2 5.2 0.00011 38.2 4.8 31 104-134 26-56 (404)
68 smart00732 YqgFc Likely ribonu 74.2 32 0.0007 25.3 9.2 50 107-164 38-92 (99)
69 cd00828 elong_cond_enzymes "el 73.3 6.9 0.00015 36.7 5.3 66 106-172 274-341 (407)
70 PRK13310 N-acetyl-D-glucosamin 72.6 41 0.0009 30.2 10.1 28 145-172 86-113 (303)
71 PRK07108 acetyl-CoA acetyltran 72.6 5.3 0.00011 38.2 4.5 55 106-164 29-88 (392)
72 PRK09258 3-oxoacyl-(acyl carri 72.4 6.3 0.00014 36.0 4.7 47 103-158 236-282 (338)
73 PRK05656 acetyl-CoA acetyltran 71.9 5.4 0.00012 38.0 4.3 30 105-134 27-56 (393)
74 PRK09051 beta-ketothiolase; Pr 71.7 6.6 0.00014 37.6 4.8 61 104-164 27-88 (394)
75 TIGR01930 AcCoA-C-Actrans acet 70.9 6.2 0.00013 37.4 4.5 30 104-133 21-50 (386)
76 PLN02326 3-oxoacyl-[acyl-carri 70.2 8.2 0.00018 36.4 5.1 46 105-159 279-324 (379)
77 TIGR01234 L-ribulokinase L-rib 69.9 24 0.00053 34.8 8.5 31 103-133 60-90 (536)
78 TIGR01314 gntK_FGGY gluconate 69.6 30 0.00064 33.8 9.0 33 103-136 47-80 (505)
79 PRK09258 3-oxoacyl-(acyl carri 69.0 7.6 0.00017 35.4 4.5 34 105-138 62-96 (338)
80 PRK06840 hypothetical protein; 68.8 8.2 0.00018 35.3 4.7 43 107-158 238-280 (339)
81 cd00830 KAS_III Ketoacyl-acyl 68.8 9.4 0.0002 34.2 5.0 45 105-158 222-266 (320)
82 cd00751 thiolase Thiolase are 68.5 5.6 0.00012 37.5 3.6 31 104-134 22-52 (386)
83 cd00327 cond_enzymes Condensin 67.9 16 0.00035 31.3 6.1 51 107-163 10-65 (254)
84 PRK12880 3-oxoacyl-(acyl carri 67.7 8.1 0.00018 36.3 4.5 46 105-159 241-286 (353)
85 PRK06954 acetyl-CoA acetyltran 67.6 7.9 0.00017 37.0 4.4 29 105-133 32-60 (397)
86 PRK05963 3-oxoacyl-(acyl carri 67.6 9.6 0.00021 34.6 4.8 31 104-134 225-255 (326)
87 PLN02644 acetyl-CoA C-acetyltr 67.5 9.6 0.00021 36.3 5.0 30 104-133 25-54 (394)
88 PRK08131 acetyl-CoA acetyltran 67.4 8.2 0.00018 37.1 4.5 56 105-164 27-87 (401)
89 PRK06065 acetyl-CoA acetyltran 67.4 9.6 0.00021 36.5 5.0 57 105-164 30-89 (392)
90 PRK06633 acetyl-CoA acetyltran 67.0 5.5 0.00012 38.2 3.3 28 107-134 30-57 (392)
91 PRK09352 3-oxoacyl-(acyl carri 67.0 11 0.00024 33.9 5.1 48 103-159 216-263 (319)
92 cd00831 CHS_like Chalcone and 66.9 8.8 0.00019 35.6 4.5 29 108-136 89-117 (361)
93 PLN02669 xylulokinase 65.9 27 0.00059 34.9 8.0 20 3-22 9-28 (556)
94 PRK00976 hypothetical protein; 65.4 1.3E+02 0.0028 28.7 12.0 19 118-136 45-63 (326)
95 PLN02287 3-ketoacyl-CoA thiola 65.0 9.8 0.00021 37.3 4.6 31 104-134 71-101 (452)
96 cd00827 init_cond_enzymes "ini 65.0 10 0.00022 34.0 4.5 30 104-133 48-77 (324)
97 PRK07850 acetyl-CoA acetyltran 64.6 11 0.00023 36.0 4.7 29 106-134 28-56 (387)
98 PRK08313 acetyl-CoA acetyltran 64.6 9.3 0.0002 36.3 4.3 34 105-138 25-58 (386)
99 PRK05082 N-acetylmannosamine k 64.4 1E+02 0.0022 27.4 10.8 21 2-22 1-21 (291)
100 PRK07515 3-oxoacyl-(acyl carri 64.3 12 0.00027 34.9 5.0 43 103-150 268-310 (372)
101 PRK12404 stage V sporulation p 64.1 11 0.00023 36.0 4.5 31 104-134 54-84 (334)
102 PLN03173 chalcone synthase; Pr 64.0 15 0.00032 35.2 5.6 46 104-158 275-320 (391)
103 KOG1250|consensus 63.7 13 0.00029 36.4 5.1 59 111-177 204-263 (457)
104 PRK08170 acetyl-CoA acetyltran 63.1 12 0.00027 36.0 4.9 29 105-133 28-56 (426)
105 cd00830 KAS_III Ketoacyl-acyl 63.0 14 0.00031 33.0 5.0 29 105-133 51-79 (320)
106 TIGR00747 fabH 3-oxoacyl-(acyl 62.7 16 0.00034 33.0 5.2 46 105-159 218-263 (318)
107 cd00826 nondecarbox_cond_enzym 62.6 12 0.00027 35.6 4.7 58 106-164 25-83 (393)
108 PRK05788 cobalamin biosynthesi 62.5 17 0.00036 34.1 5.5 51 106-163 208-258 (315)
109 PRK05790 putative acyltransfer 62.2 11 0.00024 35.6 4.4 30 104-133 26-55 (393)
110 TIGR00228 ruvC crossover junct 62.1 34 0.00074 29.1 6.8 19 4-22 1-19 (156)
111 PRK04262 hypothetical protein; 61.9 10 0.00022 35.2 3.9 41 106-151 209-249 (347)
112 PRK06816 3-oxoacyl-(acyl carri 61.1 17 0.00038 34.2 5.4 39 108-151 274-312 (378)
113 PLN03169 chalcone synthase fam 61.0 19 0.00041 34.3 5.7 47 103-158 278-326 (391)
114 COG4020 Uncharacterized protei 60.6 37 0.0008 31.7 7.1 27 110-136 42-68 (332)
115 cd00829 SCP-x_thiolase Thiolas 60.5 14 0.00029 34.4 4.5 29 105-133 17-45 (375)
116 PRK07851 acetyl-CoA acetyltran 60.5 13 0.00027 35.7 4.4 30 104-133 27-57 (406)
117 PF08541 ACP_syn_III_C: 3-Oxoa 59.6 11 0.00023 27.8 3.0 34 116-158 1-34 (90)
118 PTZ00455 3-ketoacyl-CoA thiola 58.9 18 0.00039 35.2 5.2 31 104-134 48-80 (438)
119 PRK07204 3-oxoacyl-(acyl carri 58.2 20 0.00043 32.6 5.1 30 105-134 53-82 (329)
120 PRK06157 acetyl-CoA acetyltran 57.8 15 0.00032 35.1 4.3 30 104-133 27-56 (398)
121 cd00832 CLF Chain-length facto 57.5 19 0.00042 34.2 5.1 63 105-171 269-334 (399)
122 cd00833 PKS polyketide synthas 57.0 23 0.0005 33.0 5.5 66 105-171 278-348 (421)
123 PRK06365 acetyl-CoA acetyltran 56.9 16 0.00034 35.4 4.4 35 105-139 38-72 (430)
124 PRK09052 acetyl-CoA acetyltran 56.8 18 0.00039 34.7 4.8 29 105-133 32-61 (399)
125 PRK12880 3-oxoacyl-(acyl carri 56.8 18 0.00039 33.9 4.7 29 108-136 64-93 (353)
126 PRK09585 anmK anhydro-N-acetyl 56.7 22 0.00048 34.1 5.3 59 101-161 66-129 (365)
127 PF00195 Chal_sti_synt_N: Chal 56.6 32 0.00069 30.9 6.0 65 103-169 98-164 (226)
128 TIGR02446 FadI fatty oxidation 55.9 13 0.00028 36.1 3.6 55 105-163 32-90 (430)
129 PRK08947 fadA 3-ketoacyl-CoA t 55.6 17 0.00037 34.6 4.3 54 107-164 30-89 (387)
130 cd00327 cond_enzymes Condensin 55.3 24 0.00053 30.2 5.0 32 106-138 145-176 (254)
131 PRK04262 hypothetical protein; 54.7 15 0.00033 34.0 3.8 29 104-132 51-79 (347)
132 PRK06059 lipid-transfer protei 54.6 22 0.00047 33.8 4.9 28 105-132 24-51 (399)
133 PRK12879 3-oxoacyl-(acyl carri 54.3 28 0.0006 31.4 5.4 30 105-134 54-83 (325)
134 PF00480 ROK: ROK family; Int 54.1 1.2E+02 0.0026 24.7 8.7 64 104-174 35-110 (179)
135 TIGR00748 HMG_CoA_syn_Arc hydr 53.8 17 0.00037 33.8 4.0 29 105-133 51-79 (345)
136 PLN02836 3-oxoacyl-[acyl-carri 53.7 26 0.00056 33.8 5.3 64 106-170 299-366 (437)
137 PRK09185 3-oxoacyl-(acyl carri 53.6 29 0.00062 32.9 5.5 60 108-171 262-323 (392)
138 TIGR00747 fabH 3-oxoacyl-(acyl 53.5 28 0.00061 31.3 5.3 29 105-133 52-80 (318)
139 PRK09050 beta-ketoadipyl CoA t 53.4 22 0.00047 34.2 4.7 60 106-165 28-89 (401)
140 PRK06840 hypothetical protein; 53.1 19 0.00041 32.9 4.2 27 105-131 54-80 (339)
141 PRK06519 3-oxoacyl-(acyl carri 52.9 34 0.00073 32.9 5.9 61 106-171 280-340 (398)
142 TIGR00748 HMG_CoA_syn_Arc hydr 52.6 22 0.00048 33.1 4.5 30 105-134 207-236 (345)
143 TIGR02628 fuculo_kin_coli L-fu 52.4 90 0.0019 30.2 8.8 20 3-22 2-21 (465)
144 PRK14691 3-oxoacyl-(acyl carri 52.2 22 0.00048 33.4 4.5 64 106-170 206-270 (342)
145 PLN03170 chalcone synthase; Pr 52.0 38 0.00082 32.5 6.1 23 109-131 111-133 (401)
146 PLN03168 chalcone synthase; Pr 51.7 31 0.00068 32.9 5.5 31 104-134 100-131 (389)
147 PLN03170 chalcone synthase; Pr 51.5 34 0.00075 32.8 5.7 47 103-158 278-324 (401)
148 PRK06289 acetyl-CoA acetyltran 51.4 21 0.00045 34.0 4.2 29 105-133 27-55 (403)
149 cd00831 CHS_like Chalcone and 51.3 32 0.00069 31.9 5.4 47 103-158 256-304 (361)
150 PRK06064 acetyl-CoA acetyltran 51.3 23 0.00051 33.3 4.5 57 104-163 22-82 (389)
151 PRK06158 thiolase; Provisional 51.1 32 0.0007 32.6 5.4 30 104-133 28-57 (384)
152 TIGR03150 fabF beta-ketoacyl-a 50.9 32 0.00068 32.1 5.3 30 108-138 277-306 (407)
153 PLN02326 3-oxoacyl-[acyl-carri 50.5 28 0.00061 32.8 4.9 29 105-133 97-125 (379)
154 PF14574 DUF4445: Domain of un 50.4 54 0.0012 32.0 6.9 96 105-200 63-185 (412)
155 PRK07661 acetyl-CoA acetyltran 50.4 27 0.00059 33.3 4.8 29 105-133 28-56 (391)
156 PRK07910 3-oxoacyl-(acyl carri 50.2 29 0.00064 33.3 5.1 60 108-171 288-350 (418)
157 PLN03172 chalcone synthase fam 50.0 43 0.00092 32.1 6.1 23 109-131 107-129 (393)
158 cd00825 decarbox_cond_enzymes 50.0 17 0.00037 32.5 3.3 28 105-132 204-231 (332)
159 PRK09352 3-oxoacyl-(acyl carri 49.9 38 0.00082 30.4 5.5 30 104-133 52-81 (319)
160 PTZ00340 O-sialoglycoprotein e 49.7 8.5 0.00018 36.7 1.3 38 27-64 25-65 (345)
161 PRK07314 3-oxoacyl-(acyl carri 49.5 32 0.0007 32.3 5.2 29 108-137 278-306 (411)
162 PRK06504 acetyl-CoA acetyltran 49.4 23 0.00051 33.9 4.2 58 105-164 27-87 (390)
163 PLN03172 chalcone synthase fam 48.9 35 0.00075 32.8 5.3 44 103-151 274-317 (393)
164 PRK09268 acetyl-CoA acetyltran 48.9 26 0.00056 33.9 4.5 29 105-133 32-60 (427)
165 COG3424 BcsA Predicted naringe 48.8 41 0.00089 32.1 5.6 41 98-138 70-110 (356)
166 TIGR02430 pcaF beta-ketoadipyl 48.5 26 0.00057 33.6 4.5 59 106-164 27-87 (400)
167 PRK06147 3-oxoacyl-(acyl carri 48.2 36 0.00078 31.8 5.2 66 105-171 233-300 (348)
168 PRK08242 acetyl-CoA acetyltran 47.6 30 0.00066 33.3 4.7 27 108-134 32-58 (402)
169 PRK07515 3-oxoacyl-(acyl carri 47.5 39 0.00085 31.5 5.4 29 106-134 97-125 (372)
170 COG0332 FabH 3-oxoacyl-[acyl-c 47.2 18 0.00039 34.1 3.1 30 106-135 54-84 (323)
171 PRK06501 3-oxoacyl-(acyl carri 46.9 37 0.00079 32.6 5.2 62 106-171 289-355 (425)
172 PLN03173 chalcone synthase; Pr 46.8 54 0.0012 31.4 6.3 22 110-131 108-129 (391)
173 TIGR02445 fadA fatty oxidation 46.0 27 0.00059 33.2 4.1 57 106-165 27-88 (385)
174 cd04697 Nudix_Hydrolase_38 Mem 45.5 41 0.0009 26.1 4.5 53 72-130 7-67 (126)
175 PRK06333 3-oxoacyl-(acyl carri 45.1 33 0.00072 32.5 4.6 63 107-170 289-352 (424)
176 cd04679 Nudix_Hydrolase_20 Mem 44.9 51 0.0011 25.3 4.9 55 73-133 10-69 (125)
177 PRK12578 acetyl-CoA acetyltran 44.7 34 0.00073 32.3 4.5 29 105-133 22-50 (385)
178 PF02803 Thiolase_C: Thiolase, 44.5 13 0.00029 30.2 1.5 36 94-133 14-49 (123)
179 PLN03169 chalcone synthase fam 44.4 54 0.0012 31.2 5.9 28 109-136 111-138 (391)
180 smart00825 PKS_KS Beta-ketoacy 44.1 48 0.001 31.1 5.4 65 106-171 279-348 (424)
181 PF03652 UPF0081: Uncharacteri 44.1 1.3E+02 0.0029 24.4 7.4 49 110-163 41-94 (135)
182 cd00825 decarbox_cond_enzymes 44.0 51 0.0011 29.5 5.4 31 104-134 11-45 (332)
183 PRK06816 3-oxoacyl-(acyl carri 43.8 44 0.00095 31.5 5.1 32 105-136 64-96 (378)
184 cd04678 Nudix_Hydrolase_19 Mem 43.5 53 0.0012 25.3 4.8 54 73-132 10-68 (129)
185 cd00834 KAS_I_II Beta-ketoacyl 42.8 44 0.00096 31.0 4.9 31 106-137 275-305 (406)
186 PRK07937 lipid-transfer protei 42.7 36 0.00077 32.2 4.3 28 105-132 25-52 (352)
187 PRK07516 acetyl-CoA acetyltran 42.1 40 0.00087 31.8 4.6 29 106-134 24-52 (389)
188 TIGR00143 hypF [NiFe] hydrogen 41.3 18 0.0004 37.5 2.3 34 207-240 558-595 (711)
189 PRK13359 beta-ketoadipyl CoA t 40.7 45 0.00098 32.0 4.7 59 105-163 27-87 (400)
190 cd03671 Ap4A_hydrolase_plant_l 40.3 60 0.0013 26.0 4.8 53 73-131 11-66 (147)
191 PRK05952 3-oxoacyl-(acyl carri 40.1 42 0.0009 32.0 4.4 61 107-171 255-317 (381)
192 PTZ00050 3-oxoacyl-acyl carrie 40.0 53 0.0012 31.4 5.1 63 108-171 285-351 (421)
193 cd03430 GDPMH GDP-mannose glyc 39.9 59 0.0013 26.2 4.7 47 72-124 19-70 (144)
194 PLN02787 3-oxoacyl-[acyl-carri 38.6 45 0.00098 33.5 4.5 63 108-171 407-470 (540)
195 PRK10331 L-fuculokinase; Provi 37.8 2.4E+02 0.0051 27.3 9.2 31 104-136 52-83 (470)
196 PRK06445 acetyl-CoA acetyltran 37.6 33 0.00072 32.6 3.3 28 106-133 34-61 (394)
197 PRK08722 3-oxoacyl-(acyl carri 37.6 66 0.0014 30.9 5.3 63 108-171 280-345 (414)
198 COG0443 DnaK Molecular chapero 37.4 4.6E+02 0.0099 26.6 16.3 109 95-213 95-208 (579)
199 PRK05963 3-oxoacyl-(acyl carri 35.8 36 0.00079 30.9 3.1 32 105-136 53-85 (326)
200 PRK07801 acetyl-CoA acetyltran 35.2 40 0.00087 31.8 3.4 32 102-133 24-55 (382)
201 cd04696 Nudix_Hydrolase_37 Mem 34.9 81 0.0018 24.2 4.6 52 74-131 11-65 (125)
202 PRK13321 pantothenate kinase; 34.5 3.3E+02 0.0072 24.2 10.7 52 106-163 37-89 (256)
203 cd01743 GATase1_Anthranilate_S 34.3 1.1E+02 0.0025 25.4 5.7 49 123-173 40-91 (184)
204 KOG1391|consensus 34.2 35 0.00077 32.0 2.7 36 94-133 285-320 (396)
205 PF00117 GATase: Glutamine ami 34.1 88 0.0019 25.9 5.0 50 123-173 40-92 (192)
206 CHL00203 fabH 3-oxoacyl-acyl-c 33.9 39 0.00086 30.8 3.0 28 105-132 52-79 (326)
207 cd04664 Nudix_Hydrolase_7 Memb 33.8 66 0.0014 24.8 3.9 50 76-131 14-67 (129)
208 cd04677 Nudix_Hydrolase_18 Mem 33.6 76 0.0016 24.3 4.2 56 73-134 15-72 (132)
209 cd04680 Nudix_Hydrolase_21 Mem 33.1 1.1E+02 0.0024 22.9 5.0 54 73-132 8-64 (120)
210 PRK09116 3-oxoacyl-(acyl carri 32.8 69 0.0015 30.6 4.6 62 106-171 275-338 (405)
211 PRK06066 acetyl-CoA acetyltran 32.4 87 0.0019 30.0 5.2 31 102-132 23-55 (385)
212 cd04667 Nudix_Hydrolase_10 Mem 32.3 1E+02 0.0022 23.1 4.7 51 75-131 9-60 (112)
213 cd02185 AroH Chorismate mutase 31.8 89 0.0019 25.5 4.4 58 105-164 19-76 (117)
214 cd04690 Nudix_Hydrolase_31 Mem 31.8 1.1E+02 0.0023 23.0 4.8 54 73-132 8-65 (118)
215 PRK00714 RNA pyrophosphohydrol 31.1 95 0.0021 25.5 4.6 55 72-132 15-72 (156)
216 PLN03171 chalcone synthase-lik 30.9 87 0.0019 30.0 4.9 27 109-135 113-140 (399)
217 COG3981 Predicted acetyltransf 30.7 1.9E+02 0.004 25.3 6.4 66 73-143 74-148 (174)
218 cd04687 Nudix_Hydrolase_28 Mem 30.3 1E+02 0.0022 23.8 4.4 51 75-131 10-64 (128)
219 PF03702 UPF0075: Uncharacteri 30.2 40 0.00086 32.3 2.5 55 105-161 67-128 (364)
220 PF00352 TBP: Transcription fa 29.9 1.4E+02 0.003 22.2 5.0 45 179-223 37-82 (86)
221 PRK09136 5'-methylthioadenosin 29.8 68 0.0015 28.9 3.8 40 100-139 127-166 (245)
222 PRK07103 polyketide beta-ketoa 29.7 60 0.0013 30.9 3.6 30 108-138 283-312 (410)
223 PRK09213 pur operon repressor; 29.4 87 0.0019 28.9 4.4 92 64-164 31-161 (271)
224 KOG4417|consensus 29.4 1.5E+02 0.0033 26.9 5.8 67 89-163 84-150 (261)
225 PRK13318 pantothenate kinase; 29.0 3.3E+02 0.0071 24.2 8.0 30 108-137 39-69 (258)
226 PLN02325 nudix hydrolase 29.0 1.2E+02 0.0026 24.5 4.8 51 76-132 19-74 (144)
227 TIGR01835 HMG-CoA-S_prok 3-hyd 28.9 99 0.0022 29.2 4.9 32 103-134 202-233 (379)
228 KOG1394|consensus 28.1 37 0.0008 33.1 1.8 23 109-131 304-326 (440)
229 cd00827 init_cond_enzymes "ini 27.9 1.1E+02 0.0023 27.4 4.7 29 105-134 222-250 (324)
230 CHL00197 carA carbamoyl-phosph 27.9 96 0.0021 30.0 4.6 38 125-163 233-270 (382)
231 PF03990 DUF348: Domain of unk 27.9 63 0.0014 21.1 2.4 22 111-132 19-40 (43)
232 PF14174 YycC: YycC-like prote 27.8 17 0.00037 25.6 -0.3 34 141-174 4-37 (53)
233 cd06155 eu_AANH_C_1 A group of 27.4 52 0.0011 25.1 2.3 34 99-132 22-55 (101)
234 cd03424 ADPRase_NUDT5 ADP-ribo 27.2 1.4E+02 0.0029 23.2 4.7 53 73-131 10-68 (137)
235 cd00829 SCP-x_thiolase Thiolas 27.1 49 0.0011 30.6 2.5 28 106-133 251-278 (375)
236 cd04681 Nudix_Hydrolase_22 Mem 27.0 1.2E+02 0.0026 23.2 4.3 52 73-130 9-65 (130)
237 TIGR01859 fruc_bis_ald_ fructo 26.6 1.2E+02 0.0026 27.9 4.9 38 125-162 166-206 (282)
238 PRK00109 Holliday junction res 26.2 3.6E+02 0.0078 22.0 10.0 49 110-163 44-96 (138)
239 cd04689 Nudix_Hydrolase_30 Mem 26.1 95 0.0021 23.7 3.6 51 75-131 10-62 (125)
240 PRK06025 acetyl-CoA acetyltran 26.1 1E+02 0.0023 30.0 4.6 52 108-164 33-90 (417)
241 TIGR01744 XPRTase xanthine pho 25.9 1.8E+02 0.0039 25.1 5.6 33 123-163 48-80 (191)
242 TIGR02350 prok_dnaK chaperone 25.8 1.1E+02 0.0024 30.6 4.9 44 99-142 298-341 (595)
243 TIGR00566 trpG_papA glutamine 25.6 93 0.002 26.4 3.7 37 125-163 43-79 (188)
244 PTZ00186 heat shock 70 kDa pre 25.5 2E+02 0.0044 29.6 6.7 60 104-169 332-392 (657)
245 KOG2708|consensus 25.3 33 0.0007 31.8 0.9 44 72-119 17-60 (336)
246 PRK08242 acetyl-CoA acetyltran 24.9 42 0.0009 32.4 1.6 24 109-132 303-326 (402)
247 cd04671 Nudix_Hydrolase_13 Mem 24.4 1.6E+02 0.0035 22.9 4.7 55 73-133 8-67 (123)
248 PTZ00297 pantothenate kinase; 24.2 1E+03 0.022 27.3 12.2 27 32-60 1053-1079(1452)
249 PRK13410 molecular chaperone D 23.9 1.3E+02 0.0027 31.1 4.9 43 99-141 302-344 (668)
250 cd03427 MTH1 MutT homolog-1 (M 23.9 2.1E+02 0.0047 22.0 5.3 36 90-131 30-65 (137)
251 PF10079 DUF2317: Uncharacteri 23.7 1.3E+02 0.0028 30.5 4.8 40 124-163 81-129 (542)
252 PRK07855 lipid-transfer protei 23.7 69 0.0015 30.5 2.8 28 104-131 24-51 (386)
253 CHL00101 trpG anthranilate syn 23.6 85 0.0018 26.6 3.1 47 124-172 42-91 (190)
254 PRK00290 dnaK molecular chaper 23.6 1.4E+02 0.0031 30.2 5.2 43 100-142 301-343 (627)
255 cd04670 Nudix_Hydrolase_12 Mem 23.5 1.8E+02 0.0039 22.2 4.7 52 73-130 10-65 (127)
256 PF07451 SpoVAD: Stage V sporu 23.4 86 0.0019 29.9 3.3 52 104-162 51-102 (329)
257 PRK05656 acetyl-CoA acetyltran 23.4 45 0.00097 31.8 1.5 24 109-132 294-317 (393)
258 PRK09052 acetyl-CoA acetyltran 23.1 45 0.00097 32.0 1.4 23 109-131 300-322 (399)
259 PRK06205 acetyl-CoA acetyltran 23.0 50 0.0011 31.6 1.7 23 109-131 301-323 (404)
260 COG0304 FabB 3-oxoacyl-(acyl-c 22.9 1.5E+02 0.0031 29.0 4.9 61 110-171 280-342 (412)
261 PRK07661 acetyl-CoA acetyltran 22.8 46 0.001 31.8 1.5 24 108-131 291-314 (391)
262 PRK06633 acetyl-CoA acetyltran 22.4 47 0.001 31.9 1.4 24 109-132 293-316 (392)
263 PRK07108 acetyl-CoA acetyltran 22.4 39 0.00084 32.3 0.8 23 109-131 293-315 (392)
264 COG0371 GldA Glycerol dehydrog 22.3 1.2E+02 0.0026 29.2 4.1 26 145-170 97-122 (360)
265 PF05014 Nuc_deoxyrib_tr: Nucl 22.2 68 0.0015 24.7 2.1 48 105-164 48-97 (113)
266 COG3426 Butyrate kinase [Energ 22.2 3.2E+02 0.007 26.1 6.7 53 110-163 53-129 (358)
267 KOG1794|consensus 22.1 5.8E+02 0.013 24.4 8.4 30 104-133 45-75 (336)
268 PRK08256 lipid-transfer protei 21.9 91 0.002 29.5 3.3 28 105-132 23-50 (391)
269 PRK08142 acetyl-CoA acetyltran 21.9 73 0.0016 30.5 2.6 29 103-131 24-52 (388)
270 PRK05790 putative acyltransfer 21.9 55 0.0012 30.9 1.8 23 109-131 294-316 (393)
271 PRK06954 acetyl-CoA acetyltran 21.8 53 0.0011 31.4 1.6 24 108-131 297-320 (397)
272 TIGR00676 fadh2 5,10-methylene 21.8 3.3E+02 0.0072 24.5 6.8 49 106-161 15-63 (272)
273 PRK09051 beta-ketothiolase; Pr 21.8 50 0.0011 31.6 1.5 25 108-132 294-318 (394)
274 PRK06445 acetyl-CoA acetyltran 21.7 56 0.0012 31.1 1.8 26 108-133 294-319 (394)
275 cd04676 Nudix_Hydrolase_17 Mem 21.5 1.8E+02 0.0039 21.6 4.3 52 74-131 11-64 (129)
276 cd04688 Nudix_Hydrolase_29 Mem 21.4 1.3E+02 0.0028 23.0 3.6 51 76-132 11-63 (126)
277 PRK02277 orotate phosphoribosy 21.3 5.3E+02 0.011 22.1 8.1 97 41-163 18-115 (200)
278 PRK06064 acetyl-CoA acetyltran 21.3 53 0.0011 31.0 1.5 29 108-137 260-288 (389)
279 PRK06806 fructose-bisphosphate 21.0 1.9E+02 0.0041 26.6 5.1 37 125-161 166-205 (281)
280 PRK13411 molecular chaperone D 21.0 1.5E+02 0.0032 30.4 4.8 40 103-142 305-344 (653)
281 TIGR01833 HMG-CoA-S_euk 3-hydr 20.9 2.1E+02 0.0047 28.2 5.7 33 104-136 50-82 (454)
282 COG0503 Apt Adenine/guanine ph 20.9 2.5E+02 0.0054 23.9 5.5 32 124-163 52-83 (179)
283 cd00826 nondecarbox_cond_enzym 20.8 52 0.0011 31.3 1.4 24 109-132 272-295 (393)
284 PRK08257 acetyl-CoA acetyltran 20.8 1E+02 0.0022 30.5 3.5 30 104-133 27-58 (498)
285 COG0519 GuaA GMP synthase, PP- 20.7 46 0.00099 31.4 0.9 54 92-164 29-84 (315)
286 PLN02287 3-ketoacyl-CoA thiola 20.6 60 0.0013 31.8 1.8 24 109-132 334-357 (452)
287 PRK07765 para-aminobenzoate sy 20.6 1.6E+02 0.0034 25.7 4.2 39 124-163 45-83 (214)
288 cd04684 Nudix_Hydrolase_25 Con 20.5 2.1E+02 0.0045 21.5 4.5 49 77-131 11-64 (128)
289 CHL00094 dnaK heat shock prote 20.4 1.8E+02 0.0038 29.6 5.1 40 103-142 306-345 (621)
290 PRK13359 beta-ketoadipyl CoA t 20.4 45 0.00097 32.1 0.8 23 109-131 299-321 (400)
291 TIGR03610 RutC pyrimidine util 20.4 83 0.0018 25.2 2.3 39 93-131 40-78 (127)
292 CHL00094 dnaK heat shock prote 20.2 9.1E+02 0.02 24.4 16.6 113 94-217 109-228 (621)
293 PLN02577 hydroxymethylglutaryl 20.1 1.6E+02 0.0036 29.1 4.7 27 109-135 58-84 (459)
294 PRK07516 acetyl-CoA acetyltran 20.1 72 0.0016 30.1 2.2 25 108-132 262-286 (389)
295 TIGR01991 HscA Fe-S protein as 20.0 1.9E+02 0.0042 29.2 5.3 44 98-141 285-328 (599)
No 1
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-60 Score=440.57 Aligned_cols=182 Identities=44% Similarity=0.676 Sum_probs=173.0
Q ss_pred eEEEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEe
Q psy16095 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILS 81 (241)
Q Consensus 2 ~~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 81 (241)
|++||||||||+||||||+++ + ||+
T Consensus 1 m~iLGIEtScDeT~vaIv~~~------------------------------------------------------~-ila 25 (342)
T COG0533 1 MIILGIETSCDETGVAIVDEE------------------------------------------------------K-ILA 25 (342)
T ss_pred CeEEEEEcccccceeEEEecc------------------------------------------------------C-hhh
Confidence 789999999999999999985 2 789
Q ss_pred eeeeecc--cCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCe
Q psy16095 82 NCRRTYV--TPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPI 159 (241)
Q Consensus 82 ~~~~s~~--~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPl 159 (241)
|.+.||+ |++|||||||+|+|+|.++++++|+++|+++|++++|||+||||.|||+.++|+||+++||+||.+|++|+
T Consensus 26 n~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kPl 105 (342)
T COG0533 26 NVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKPL 105 (342)
T ss_pred eehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCCE
Confidence 9999997 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhhcccccCCCCc-EEEEEeCCceEEEEEeC-CcEEEEeeeccChhhhHHHHHHHHhCCCCCCCCc-HHHH
Q psy16095 160 VGVNHCIGHIEMGRNVTKCENP-TVLYVSGGNTQVIAYSR-QRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPG-YNIE 236 (241)
Q Consensus 160 i~V~HleaHa~sa~~~~~~~~P-l~L~VSGGhT~l~~~~~-~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~PG-p~iE 236 (241)
++|||+++|++++++..+..+| ++|+|||||||++.+++ ++|+++|+|+|||+||+|||+||+|||+ ||| |.||
T Consensus 106 i~VnH~~gHi~a~~l~~~~~~p~v~LlVSGGHTqli~~~~~g~y~ilGeTlDdA~Gea~DKvAR~lGL~---yPGGp~Ie 182 (342)
T COG0533 106 IPVNHLEGHIEAARLETGLAFPPVALLVSGGHTQLIAVRGIGRYEVLGETLDDAAGEAFDKVARLLGLG---YPGGPAIE 182 (342)
T ss_pred eecchHHHHHHHHHhccCCCCCcEEEEEecCceEEEEEcCCCcEEEEeeechhhhhHHHHHHHHHhCCC---CCCcHHHH
Confidence 9999999999999998774455 89999999999999855 9999999999999999999999999999 895 9999
Q ss_pred hhhhC
Q psy16095 237 QMAKK 241 (241)
Q Consensus 237 ~lA~~ 241 (241)
+||++
T Consensus 183 ~lA~~ 187 (342)
T COG0533 183 KLAKK 187 (342)
T ss_pred HHHhc
Confidence 99985
No 2
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=100.00 E-value=1.7e-56 Score=416.40 Aligned_cols=183 Identities=73% Similarity=1.216 Sum_probs=172.1
Q ss_pred eEEEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEe
Q psy16095 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILS 81 (241)
Q Consensus 2 ~~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 81 (241)
|++||||||||+|||||+|.+ +++++
T Consensus 1 ~~iLgIETScd~tsvAl~~~~------------------------------------------------------~~il~ 26 (345)
T PTZ00340 1 FLALGIEGSANKLGVGIVTSD------------------------------------------------------GEILS 26 (345)
T ss_pred CeEEEEEccchhhEEEEEECC------------------------------------------------------CcEEE
Confidence 689999999999999999863 35899
Q ss_pred eeeeecccCCCC-cccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeE
Q psy16095 82 NCRRTYVTPPGE-GFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIV 160 (241)
Q Consensus 82 ~~~~s~~~~~~g-GvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli 160 (241)
+.+.+|. .+|| ||+||+|+|+|.++|+++|+++|+++|++++|||+||||.|||+|||||||+++||+||+++++|++
T Consensus 27 ~~~~sq~-~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Pli 105 (345)
T PTZ00340 27 NVRETYI-TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLV 105 (345)
T ss_pred EEEeecc-ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEe
Confidence 9999998 6666 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhhhcccccCCCCcEEEEEeCCceEEEEEeCCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCC--cHHHHhh
Q psy16095 161 GVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP--GYNIEQM 238 (241)
Q Consensus 161 ~V~HleaHa~sa~~~~~~~~Pl~L~VSGGhT~l~~~~~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~P--Gp~iE~l 238 (241)
+|||+++|++++++.++.++|++|+||||||+++..+.++|++||+|+|||+||+|||+||+|||++ || ||.||++
T Consensus 106 gV~HlegHi~a~~l~~~~~~Pl~LlVSGGhT~l~~~~~~~~~ilG~T~Dda~Gea~DKvar~LGL~~--yp~gGp~iE~l 183 (345)
T PTZ00340 106 GVNHCVAHIEMGRLVTGAENPVVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARLLNLSN--DPAPGYNIEQL 183 (345)
T ss_pred ecchHHHHHHHHhhccCCCCCeEEEEeCCceEEEEecCCeEEEEEeecccchhHHHHHHHHHhCCCC--CCCChHHHHHH
Confidence 9999999999999987778899999999999999877789999999999999999999999999995 57 6999999
Q ss_pred hhC
Q psy16095 239 AKK 241 (241)
Q Consensus 239 A~~ 241 (241)
|++
T Consensus 184 A~~ 186 (345)
T PTZ00340 184 AKK 186 (345)
T ss_pred Hhh
Confidence 964
No 3
>KOG2708|consensus
Probab=100.00 E-value=1.2e-51 Score=365.24 Aligned_cols=186 Identities=77% Similarity=1.297 Sum_probs=179.0
Q ss_pred CeEEEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEE
Q psy16095 1 MVIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTIL 80 (241)
Q Consensus 1 ~~~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 80 (241)
||++||+|+|+|+++|+||.. +++|+|.|+||+|||||||+||+||.||
T Consensus 1 ~~ialG~EGSANKlGvGiv~~--~~iLaN~R~TYitPPG~GFlP~~TA~HH----------------------------- 49 (336)
T KOG2708|consen 1 MMIALGLEGSANKLGVGIVRD--GKILANPRHTYITPPGEGFLPRDTARHH----------------------------- 49 (336)
T ss_pred CceEEecccccccceeeEEec--ceeecCccccccCCCCCCCCcchhHHHH-----------------------------
Confidence 799999999999999999987 5799999999999999999999999655
Q ss_pred eeeeeecccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeE
Q psy16095 81 SNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIV 160 (241)
Q Consensus 81 ~~~~~s~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli 160 (241)
...+.++++++|++++++.+|||.|+||.|||....|.+...+|+.|++.|++|++
T Consensus 50 ------------------------r~~il~Lv~~al~ea~v~~~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv 105 (336)
T KOG2708|consen 50 ------------------------RAWILGLVKQALEEAGVTSDDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLV 105 (336)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCChhhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcc
Confidence 45567899999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhhhcccccCCCCcEEEEEeCCceEEEEEeCCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCCcHHHHhhhh
Q psy16095 161 GVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYNIEQMAK 240 (241)
Q Consensus 161 ~V~HleaHa~sa~~~~~~~~Pl~L~VSGGhT~l~~~~~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~PGp~iE~lA~ 240 (241)
+|||+.+|+...+..++...|++|+||||+||++.++..+|+++|+|+|+++|+++|++||.|+++++|.||..||++|+
T Consensus 106 ~VNHCigHIEMGR~iTgA~nPvvLYvSGGNTQvIAYse~rYrIFGETlDIAvGNClDRFAR~lklsN~PsPGynieq~AK 185 (336)
T KOG2708|consen 106 GVNHCIGHIEMGREITGAQNPVVLYVSGGNTQVIAYSEKRYRIFGETLDIAVGNCLDRFARVLKLSNDPSPGYNIEQLAK 185 (336)
T ss_pred cchhhhhhhhhcceeccCCCCEEEEEeCCceEEEEEccceeeeecceehhhhhhhHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy16095 241 K 241 (241)
Q Consensus 241 ~ 241 (241)
|
T Consensus 186 ~ 186 (336)
T KOG2708|consen 186 K 186 (336)
T ss_pred h
Confidence 5
No 4
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=100.00 E-value=2.7e-48 Score=354.81 Aligned_cols=179 Identities=42% Similarity=0.686 Sum_probs=166.8
Q ss_pred EEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEeeee
Q psy16095 5 IGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILSNCR 84 (241)
Q Consensus 5 ~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~ 84 (241)
|||||||++|||||++++ ++++++.+
T Consensus 1 LaidTs~~~~sval~~~~------------------------------------------------------~~il~~~~ 26 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEE------------------------------------------------------GNVLANIK 26 (305)
T ss_pred CEEecCccceEEEEEECC------------------------------------------------------CcEEEEEE
Confidence 799999999999999852 34888898
Q ss_pred eecc--cCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEe
Q psy16095 85 RTYV--TPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGV 162 (241)
Q Consensus 85 ~s~~--~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V 162 (241)
.+|. |..||||+|+.+.|+|+++|+++|+++|+++|++++|||+|||+.|||+|||||||+++||+||..+++|+++|
T Consensus 27 ~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~~~v 106 (305)
T TIGR00329 27 ISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPLIGV 106 (305)
T ss_pred ecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEeec
Confidence 8884 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccccC--CCCcEEEEEeCCceEEEEEe-CCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCCc-HHHHhh
Q psy16095 163 NHCIGHIEMGRNVTK--CENPTVLYVSGGNTQVIAYS-RQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPG-YNIEQM 238 (241)
Q Consensus 163 ~HleaHa~sa~~~~~--~~~Pl~L~VSGGhT~l~~~~-~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~PG-p~iE~l 238 (241)
+|+++|++++++.++ +..+++|+||||||+++.++ .++++++++|.|+|+|++|||+|++|||+ ||| |.+|++
T Consensus 107 ~hl~~ha~~a~~~s~~~~~~~l~l~vsGG~t~l~~~~~~~~~~~l~~t~d~S~GrlfD~va~lLGl~---y~g~~~iE~l 183 (305)
T TIGR00329 107 NHLLGHIYAPRLDTNILQFPFVSLLVSGGHTQIIAVKGIGDYEVLGETLDDAVGEAFDKVARLLGLG---YPGGPKIEEL 183 (305)
T ss_pred ccHHHHHHHhhhhcCCCCCCcEEEEEcCCceEEEEEeCCCcEEEeeeecCchhhHHHHHHHHHcCCC---CCChHHHHHH
Confidence 999999999999877 44448999999999999975 45999999999999999999999999998 896 999999
Q ss_pred hh
Q psy16095 239 AK 240 (241)
Q Consensus 239 A~ 240 (241)
|.
T Consensus 184 A~ 185 (305)
T TIGR00329 184 AK 185 (305)
T ss_pred Hh
Confidence 85
No 5
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=100.00 E-value=4.7e-48 Score=374.43 Aligned_cols=181 Identities=51% Similarity=0.886 Sum_probs=171.5
Q ss_pred eEEEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEe
Q psy16095 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILS 81 (241)
Q Consensus 2 ~~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 81 (241)
|++|||||||++|||||++++ +++++
T Consensus 1 m~il~iets~~~~s~a~~~~~------------------------------------------------------~~~~~ 26 (535)
T PRK09605 1 MIVLGIEGTAWKTSAGIVDSD------------------------------------------------------GDVLF 26 (535)
T ss_pred CEEEEEEccccceEEEEEeCC------------------------------------------------------CcEEE
Confidence 689999999999999999853 34788
Q ss_pred eeeeecccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEE
Q psy16095 82 NCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVG 161 (241)
Q Consensus 82 ~~~~s~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~ 161 (241)
+.+.+ .+++||||+||.|+|+|+++|+++|+++|+++|++++|||+||||.|||++||||||+++||+||.++++|+++
T Consensus 27 ~~~~~-~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~gPg~~~~l~vg~~~ak~la~~~~~~~~~ 105 (535)
T PRK09605 27 NESDP-YKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGPGLGPCLRVVATAARALALSLDVPLIG 105 (535)
T ss_pred EEEee-ccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCCCCcHhhHHHHHHHHHHHHHHhCCCeec
Confidence 88766 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhhcccccCCCCcEEEEEeCCceEEEEEeCCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCCc-HHHHhhhh
Q psy16095 162 VNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPG-YNIEQMAK 240 (241)
Q Consensus 162 V~HleaHa~sa~~~~~~~~Pl~L~VSGGhT~l~~~~~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~PG-p~iE~lA~ 240 (241)
|+||+||++++++.+++++|++|++|||||+++..++++++++++|.|+|+|++|||+|++|||. +|| +.+|.+|.
T Consensus 106 v~h~~aH~~~a~~~~~~~~~l~l~vsGg~t~~~~~~~~~~~~l~~t~d~S~G~~fD~va~~Lg~~---~~g~~~le~lA~ 182 (535)
T PRK09605 106 VNHCVAHVEIGRLTTGAEDPVTLYVSGGNTQVLAYLNGRYRVFGETLDIGVGNALDKFARHVGLP---HPGGPKIEKLAK 182 (535)
T ss_pred ccHHHHHHHHhhhccCCCCCeEEEEecCCeEEEEEcCCeEEEEEeecchhhhHHHHHHHHHhCCC---CCCCHHHHHHHh
Confidence 99999999999999999999999999999999998779999999999999999999999999999 675 99999985
No 6
>PRK14878 UGMP family protein; Provisional
Probab=100.00 E-value=4.7e-48 Score=356.08 Aligned_cols=177 Identities=53% Similarity=0.899 Sum_probs=168.3
Q ss_pred EEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEeeee
Q psy16095 5 IGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILSNCR 84 (241)
Q Consensus 5 ~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~ 84 (241)
|||||||++||+||++++ +|+++.+
T Consensus 1 l~iets~~~~s~al~~~~-------------------------------------------------------~i~~~~~ 25 (323)
T PRK14878 1 LGIESTAHTLGVGIVKED-------------------------------------------------------KVLANVR 25 (323)
T ss_pred CEEecCCcccEEEEEECC-------------------------------------------------------EEEEEEE
Confidence 799999999999999852 4788888
Q ss_pred eecccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 85 RTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 85 ~s~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
.+| +.++||++||+++|+|.++|++++++||+++|++++|||+||||.|||+||+||||+++||+||..+++|+++|+|
T Consensus 26 ~~~-~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p~~~v~h 104 (323)
T PRK14878 26 DTY-VPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKPLVPVNH 104 (323)
T ss_pred Eec-ccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHhCCCccccch
Confidence 887 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcccccCCCCcEEEEEeCCceEEEEEeCCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCCc-HHHHhhhh
Q psy16095 165 CIGHIEMGRNVTKCENPTVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPG-YNIEQMAK 240 (241)
Q Consensus 165 leaHa~sa~~~~~~~~Pl~L~VSGGhT~l~~~~~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~PG-p~iE~lA~ 240 (241)
|++|++++++.+++++|++|++|||||+++.++.++++++++|.|+|+|++||++|++|||. ||| |.+|++|+
T Consensus 105 ~~~Ha~sa~~~s~~~~~l~l~vsGg~t~i~~~~~~~~~~~~~t~d~s~Gr~fD~vA~~LGl~---~~G~~~lE~~a~ 178 (323)
T PRK14878 105 CIAHIEIGRLTTGAKDPVVLYVSGGNTQVLAFRGGRYRVFGETLDIAIGNALDTFAREVGLA---PPGGPAIEKCAE 178 (323)
T ss_pred HHHHHHhhhhcCCCCCCEEEEEEcCCeEEEEEeCCeEEEeeeecCcchhHHHHHHHHHcCCC---CCChhHHHHHHh
Confidence 99999999999999999999999999999988888899999999999999999999999999 665 99999986
No 7
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=100.00 E-value=1.2e-47 Score=352.59 Aligned_cols=178 Identities=54% Similarity=0.927 Sum_probs=168.8
Q ss_pred EEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEeeee
Q psy16095 5 IGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILSNCR 84 (241)
Q Consensus 5 ~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~ 84 (241)
|||||||++||+||++++ ++|+++.+
T Consensus 1 Lgiets~~~~s~al~~~~------------------------------------------------------~~i~~~~~ 26 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDED------------------------------------------------------GEILANVS 26 (322)
T ss_pred CEEeccccceEEEEEECC------------------------------------------------------CeEEEEEE
Confidence 799999999999999853 35888888
Q ss_pred eecccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 85 RTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 85 ~s~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
.+| ++++||++||.++|.|+++|+++|++||+++|++++|||+||||.|||++|+||||+++||+|+..+++|+++|+|
T Consensus 27 ~~~-~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~vg~~~ak~la~~~~~p~~~v~h 105 (322)
T TIGR03722 27 DTY-VPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLRVGATAARALALKLNKPLVGVNH 105 (322)
T ss_pred eec-ccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHHHHHHHHHHHHHHhCCCeechhh
Confidence 887 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcccccCCCCcEEEEEeCCceEEEEEeCCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCCc-HHHHhhhh
Q psy16095 165 CIGHIEMGRNVTKCENPTVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPG-YNIEQMAK 240 (241)
Q Consensus 165 leaHa~sa~~~~~~~~Pl~L~VSGGhT~l~~~~~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~PG-p~iE~lA~ 240 (241)
|++|++++++.+++++|++|+||||||+++.++.++++++++|.|+|+|++||++|++|||. +|| |.+|++|.
T Consensus 106 ~~aHa~sa~~~s~~~~~lvL~vsGg~t~l~~~~~~~~~~l~~t~d~s~GrlfDava~~LGl~---~~G~~~le~la~ 179 (322)
T TIGR03722 106 CVAHIEIGRLTTGAKDPVVLYVSGGNTQVIAYRNGRYRVFGETLDIGLGNALDKFAREVGLG---HPGGPKIEELAE 179 (322)
T ss_pred HHHHHHhhhccCCCCCCeEEEEeCCceEEEEEeCCeEEEEEEeccccchHHHHHHHHHhCCC---CCChHHHHHHHh
Confidence 99999999999999999999999999999988888899999999999999999999999999 566 99999875
No 8
>PRK09604 UGMP family protein; Validated
Probab=100.00 E-value=1.4e-46 Score=347.41 Aligned_cols=182 Identities=35% Similarity=0.574 Sum_probs=170.7
Q ss_pred eEEEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEe
Q psy16095 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILS 81 (241)
Q Consensus 2 ~~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 81 (241)
|++|||||||+++||||+|++ +++++
T Consensus 1 m~iLgIdTS~~~~sval~~~~------------------------------------------------------~~il~ 26 (332)
T PRK09604 1 MLILGIETSCDETSVAVVDDG------------------------------------------------------RGLLS 26 (332)
T ss_pred CeEEEEEccccceEEEEEECC------------------------------------------------------CcEEE
Confidence 789999999999999999863 35788
Q ss_pred eeeeecc--cCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCe
Q psy16095 82 NCRRTYV--TPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPI 159 (241)
Q Consensus 82 ~~~~s~~--~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPl 159 (241)
+.+.++. +++|||++|+.+.++|+++|+++|+++|+++|++++|||+||||.|||+|||||||+++||+|+..+++|+
T Consensus 27 ~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~~ipl 106 (332)
T PRK09604 27 NVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPL 106 (332)
T ss_pred EEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHhCCCE
Confidence 8887774 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhhcccccCCCCc-EEEEEeCCceEEEEE-eCCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCC-cHHHH
Q psy16095 160 VGVNHCIGHIEMGRNVTKCENP-TVLYVSGGNTQVIAY-SRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP-GYNIE 236 (241)
Q Consensus 160 i~V~HleaHa~sa~~~~~~~~P-l~L~VSGGhT~l~~~-~~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~P-Gp~iE 236 (241)
++|+|+++|++++++.+++++| ++|+||||||+++.. ++++++++++|.|+|+|++|||+||+|||+ || |+.+|
T Consensus 107 ~~v~h~~~ha~~a~~~s~~~~~~lvl~vsGG~s~~~~~~~~~~~~~l~~t~d~slG~~yd~~t~~LG~~---~~~g~kvm 183 (332)
T PRK09604 107 IGVNHLEGHLLAPFLEEEPEFPFLALLVSGGHTQLVLVKGIGDYELLGETLDDAAGEAFDKVAKLLGLG---YPGGPAID 183 (332)
T ss_pred EeecCHHHHHHhhhhccCCCCCEEEEEecCCccEEEEEcCCCcEEEccccCCchhhHHHHHHHHHcCCC---CCCcHHHH
Confidence 9999999999999999999877 799999999998874 679999999999999999999999999999 67 59999
Q ss_pred hhhh
Q psy16095 237 QMAK 240 (241)
Q Consensus 237 ~lA~ 240 (241)
.||.
T Consensus 184 gLA~ 187 (332)
T PRK09604 184 KLAK 187 (332)
T ss_pred HHHH
Confidence 9985
No 9
>KOG2707|consensus
Probab=100.00 E-value=4.8e-47 Score=350.13 Aligned_cols=184 Identities=32% Similarity=0.466 Sum_probs=169.5
Q ss_pred EEEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEee
Q psy16095 3 IAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILSN 82 (241)
Q Consensus 3 ~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 82 (241)
++||||||||||+|||||.. ++++++
T Consensus 33 ~VLgIETSCDDTavaVVd~~------------------------------------------------------~~~~~~ 58 (405)
T KOG2707|consen 33 KVLGIETSCDDTAVAVVDEF------------------------------------------------------SHVLSS 58 (405)
T ss_pred eeeeEecccCcceeeeeccc------------------------------------------------------ccccch
Confidence 38999999999999999885 356777
Q ss_pred eeeec--ccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeE
Q psy16095 83 CRRTY--VTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIV 160 (241)
Q Consensus 83 ~~~s~--~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli 160 (241)
.+.++ .+.+||||+|..|...|.++|++++++||+++|.+++|+|+||||.|||+..+|++|+++||+||..|++|++
T Consensus 59 ~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPli 138 (405)
T KOG2707|consen 59 EIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLI 138 (405)
T ss_pred hhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCcc
Confidence 77676 3678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeccchhhhhhccccc-CCCCc-EEEEEeCCceEEEEE-eCCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCC----cH
Q psy16095 161 GVNHCIGHIEMGRNVT-KCENP-TVLYVSGGNTQVIAY-SRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP----GY 233 (241)
Q Consensus 161 ~V~HleaHa~sa~~~~-~~~~P-l~L~VSGGhT~l~~~-~~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~P----Gp 233 (241)
+|+||+||++++++.. ..++| ++|++|||||+++.. .-++++++|.|.|+|+||+|||+||.||+...|.| |+
T Consensus 139 pVHHMeAHAL~~rl~~~~v~FPFl~lLvSGGH~llvla~~~~~~~llg~TvDiApGe~lDK~ar~Lgl~~~~e~~~~~g~ 218 (405)
T KOG2707|consen 139 PVHHMEAHALSIRLVDDSVRFPFLALLVSGGHTLLVLANGVGDHELLGQTVDIAPGEALDKCARRLGLLGHPEDARSGGK 218 (405)
T ss_pred chhHHHHhHHHHHhccCCcCCceeeEeeeCCceEEEEeccccceeeeecccccchHHHHHHHHHHhcCCCCccchhhhhh
Confidence 9999999999999987 56899 699999999999885 66999999999999999999999999999865543 59
Q ss_pred HHHhhhh
Q psy16095 234 NIEQMAK 240 (241)
Q Consensus 234 ~iE~lA~ 240 (241)
+||.+|.
T Consensus 219 aie~la~ 225 (405)
T KOG2707|consen 219 AIEHLAN 225 (405)
T ss_pred HHHHHHh
Confidence 9999886
No 10
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=100.00 E-value=2.8e-46 Score=343.36 Aligned_cols=180 Identities=37% Similarity=0.557 Sum_probs=167.2
Q ss_pred EEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEeee
Q psy16095 4 AIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILSNC 83 (241)
Q Consensus 4 ~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~ 83 (241)
+|||||||+++||||++++ ++++++.
T Consensus 1 iLaIdTs~~~~sval~~~~------------------------------------------------------~~il~~~ 26 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDG------------------------------------------------------KGLLSNI 26 (314)
T ss_pred CEEEECcccceEEEEEECC------------------------------------------------------ceEEEEE
Confidence 6899999999999999863 2478888
Q ss_pred eeecc--cCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEE
Q psy16095 84 RRTYV--TPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVG 161 (241)
Q Consensus 84 ~~s~~--~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~ 161 (241)
+.++. |++||||+||.+.|+|+++|+++|+++|++++++++|||+|||+.|||||||||||+++||+||..+++|+++
T Consensus 27 ~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~~~p~~~ 106 (314)
T TIGR03723 27 VASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALALNKPLIG 106 (314)
T ss_pred EeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCEEe
Confidence 88773 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhhccccc-CCCCc-EEEEEeCCceEEEE-EeCCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCC-cHHHHh
Q psy16095 162 VNHCIGHIEMGRNVT-KCENP-TVLYVSGGNTQVIA-YSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP-GYNIEQ 237 (241)
Q Consensus 162 V~HleaHa~sa~~~~-~~~~P-l~L~VSGGhT~l~~-~~~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~P-Gp~iE~ 237 (241)
|+||++|++++++.+ ++++| ++|++|||||+++. .+.++++++++|.|+|+|++|||++|+|||+ || |+.+|.
T Consensus 107 v~h~~aha~~a~~~s~~~~~~~lvL~vdgg~s~~~~~~~~~~~~~l~~t~d~SlG~~yd~vt~~LG~~---~~~g~kvmg 183 (314)
T TIGR03723 107 VNHLEGHLLAPFLEDKPLEFPFLALLVSGGHTQLVLVKGVGDYELLGETLDDAAGEAFDKVARLLGLG---YPGGPAIDK 183 (314)
T ss_pred cccHHHHHHhhhhccCCCCCCEEEEEEeCCCcEEEEEecCCeEEEeeccCCchhhHHHHHHHHHcCCC---CCCcHHHHH
Confidence 999999999999976 66777 68999999998887 4788999999999999999999999999998 67 599999
Q ss_pred hhh
Q psy16095 238 MAK 240 (241)
Q Consensus 238 lA~ 240 (241)
||.
T Consensus 184 LA~ 186 (314)
T TIGR03723 184 LAK 186 (314)
T ss_pred HHh
Confidence 985
No 11
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=100.00 E-value=2.7e-42 Score=310.58 Aligned_cols=161 Identities=34% Similarity=0.511 Sum_probs=142.3
Q ss_pred eEEeeeeeecc--cCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHh
Q psy16095 78 TILSNCRRTYV--TPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLW 155 (241)
Q Consensus 78 ~il~~~~~s~~--~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l 155 (241)
+||+|.+.||. |.+||||+||+|+|+|+++|+++|+++|++++++++|||+||||.|||||||||||+++||+||..+
T Consensus 1 ~vl~~~~~sq~~~~~~~gGv~P~~a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~ 80 (268)
T PF00814_consen 1 KVLSNVIASQIEIHAQYGGVVPEIASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALAL 80 (268)
T ss_dssp -EEEEEEEE--E---TTSSSSHCCHHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeeccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 58999999995 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeccchhhhhhcccccCCCCcEEEEEeCCceEEEEEeCCcEEEEeeeccChhhhHHHHHHHHhCCCCCCCC-cHH
Q psy16095 156 NKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP-GYN 234 (241)
Q Consensus 156 ~iPli~V~HleaHa~sa~~~~~~~~Pl~L~VSGGhT~l~~~~~~~~~ilg~t~DdalGe~~Dkvar~LGl~~~p~P-Gp~ 234 (241)
++|+++|||+++|++++++..+.++|+++++||||+++|...++.|+++|+|+|++.|+++||+++.||++ || ||.
T Consensus 81 ~~Pli~v~~l~a~a~~~~~~~~~~~P~~~~isa~~~~vy~~~~~~~~~~~~t~d~~~ge~~dk~~~~l~l~---~~~g~~ 157 (268)
T PF00814_consen 81 NIPLIGVSHLEAHALSARLSEGLKFPLVLLISAGHTEVYLAEGGDYEILGETLDDAIGEAFDKVARLLGLP---YPGGPA 157 (268)
T ss_dssp T--EEEEEHHHHHHHHHHHHHTEESEEEEEEECSTCEEEEEETTEEEEECCBSSSCHHHHHHHHHHHTT-----SSHHHH
T ss_pred CCCeEeeccHHHHHHhHhhhccccCceEEEEECCCccEEEEEeeEEEeeccccccccHHHHhhHHHHhccc---cccCcH
Confidence 99999999999999998876544567899999999999997569999999999999999999999999999 88 599
Q ss_pred HHhhhhC
Q psy16095 235 IEQMAKK 241 (241)
Q Consensus 235 iE~lA~~ 241 (241)
+|++|.+
T Consensus 158 le~la~~ 164 (268)
T PF00814_consen 158 LEKLASE 164 (268)
T ss_dssp HHHHHCT
T ss_pred HHHHHHh
Confidence 9999863
No 12
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=99.92 E-value=1.7e-24 Score=187.31 Aligned_cols=94 Identities=26% Similarity=0.353 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccCC
Q psy16095 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKC 178 (241)
Q Consensus 99 ~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~~ 178 (241)
.+.+.|++.|+++|+++|+++|++++|||+|+|+.|||||||||||+++||+||.++++|+++|+|+++.+.... ..
T Consensus 28 ~~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~GPGSfTGlRig~~~akgla~~~~~p~~~vssL~~lA~~~~---~~ 104 (202)
T TIGR03725 28 EAGRNHSEILLPMIEELLAEAGLSLQDLDAIAVGVGPGSFTGLRIGLATAKGLALALGIPLVGVSSLEALAAQAP---AG 104 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCEEecCHHHHHHhhCc---cC
Confidence 477899999999999999999999999999999999999999999999999999999999999999999987632 11
Q ss_pred CCcEEEEEeCCceEEEE
Q psy16095 179 ENPTVLYVSGGNTQVIA 195 (241)
Q Consensus 179 ~~Pl~L~VSGGhT~l~~ 195 (241)
..+++.+++..+.++|.
T Consensus 105 ~~~v~~~idArr~~vy~ 121 (202)
T TIGR03725 105 KGPVLVAIDARRGEVYW 121 (202)
T ss_pred CCeEEEEEEcCCCCEEE
Confidence 23467778888877776
No 13
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-23 Score=185.64 Aligned_cols=126 Identities=21% Similarity=0.328 Sum_probs=105.3
Q ss_pred eEEEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEe
Q psy16095 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILS 81 (241)
Q Consensus 2 ~~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 81 (241)
|++|+||||...+++||++.+. ++++.
T Consensus 1 m~iLaiDTs~~~~s~ai~~~~~-----------------------------------------------------~~vl~ 27 (220)
T COG1214 1 MKILAIDTSTSALSVALYLADD-----------------------------------------------------GKVLA 27 (220)
T ss_pred CcEEEEEcChhhhhhheeecCC-----------------------------------------------------CcEEE
Confidence 7899999999999999998842 34555
Q ss_pred eeeeecccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEE
Q psy16095 82 NCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVG 161 (241)
Q Consensus 82 ~~~~s~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~ 161 (241)
+... ...|.|++.|+++++++|+++|++++|||+|||+.|||||||+|||+++||+||..+|+|+++
T Consensus 28 ~~~~-------------~~~r~hse~l~~~i~~ll~~~~~~~~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvg 94 (220)
T COG1214 28 EHTE-------------KLKRNHAERLMPMIDELLKEAGLSLQDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVG 94 (220)
T ss_pred EEEE-------------eccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEE
Confidence 5433 467889999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhhcccccCCCCcEEEEEeCCceEEEE
Q psy16095 162 VNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVIA 195 (241)
Q Consensus 162 V~HleaHa~sa~~~~~~~~Pl~L~VSGGhT~l~~ 195 (241)
||++++.+.. .......++.+.+|.+..++|+
T Consensus 95 vssL~~~A~~--~~~~~~~~v~v~idArr~~vY~ 126 (220)
T COG1214 95 VSSLEALAQG--GAEKNAGFVLVAIDARRGEVYW 126 (220)
T ss_pred eCHHHHHHHh--hhccCCCceEEEEeccccceEe
Confidence 9999998876 2222223344557776666666
No 14
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.4e-14 Score=136.26 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=98.8
Q ss_pred hHHHHHHHHH-HHHHHHhhCCCCcCCcCEEEEEcCCCC----------------CChhHHHHHHHHHHH-------HHhC
Q psy16095 101 AQHHKSKVLE-VLKEALDQAKVSRDDIDVICYTKGPGM----------------GGPLTVVAIVARTLA-------LLWN 156 (241)
Q Consensus 101 ~r~H~e~L~~-~I~~~L~~agi~~~DID~IAvt~GPGs----------------~tgLRVG~s~Ak~LA-------~~l~ 156 (241)
..+|...+|. .++.||+.+++.+.|||+|+|..-|.. +.-++....+.+-++ ..+.
T Consensus 34 R~K~~~~fP~~sv~~~L~~~~~~~~dVD~va~~~~~~~~~~r~~~~yl~~~~~~~~~~~~k~~l~~~~~~l~~~~~~~~~ 113 (555)
T COG2192 34 RKKHDAGFPEQSVDYCLRLAGIELTDVDAVAVAGKPSAKFRRILAGYLKRKPELFGKLLLKKLLKRLLAELDQFFGKGLP 113 (555)
T ss_pred hhccccCCchHHHHHHHhhccCCcccccEEEEcCCcHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhhhhccccCc
Confidence 3446666666 899999999999999999999776642 111222333333332 3456
Q ss_pred CCeEEeccchhhhhhcccccCCCCcEEEEEeC-C---ceEEEEEeCCcEEEEeeec-cChhhhHHHHHHHHhCCC
Q psy16095 157 KPIVGVNHCIGHIEMGRNVTKCENPTVLYVSG-G---NTQVIAYSRQRYRIFGETI-DIAVGNCLDRFARVLKLS 226 (241)
Q Consensus 157 iPli~V~HleaHa~sa~~~~~~~~Pl~L~VSG-G---hT~l~~~~~~~~~ilg~t~-DdalGe~~Dkvar~LGl~ 226 (241)
+++..++||++|++++++.|+++..+++++|| | +++++.+++++++++-++. ++|+|.+|+.++++|||.
T Consensus 114 ~kv~~~eHH~aHAasAf~~SpF~~a~vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY~~~T~~lGf~ 188 (555)
T COG2192 114 VKVLFVEHHLAHAASAFFTSPFEEALVLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLGLFYAAFTELLGFK 188 (555)
T ss_pred cceeechHHHHHHHHHhcCCCcccceEEEEeccCCceEEEEEeccCCeeEEEEeecCcchHHHHHHHHHHHhCCC
Confidence 78999999999999999999998889999997 2 4666667789999998888 999999999999999998
No 15
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.23 E-value=0.19 Score=48.67 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccCCCCcEE
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTV 183 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~~~~Pl~ 183 (241)
+.+....+++++|+++|++.+|++.|+.|-. +. +.+...++.+.+ ++-+.+|+..+.+..+.....-
T Consensus 177 ~~~~a~~~l~~~l~~~Gl~~~di~~i~~TGy----GR--------~~i~~~~~ad~i-v~EItaha~GA~~L~p~~~~v~ 243 (404)
T TIGR03286 177 VIESAEEAVERALEEAGVSLEDVEAIGTTGY----GR--------FTIGEHFGADLI-QEELTVNSKGAVYLADKQEGPA 243 (404)
T ss_pred HHHHHHHHHHHHHHHcCCCccceeEEEeeee----cH--------HHHhhhcCCCce-EEEEhhHHHHHHHhcccCCCCc
Confidence 4566778999999999999999999988621 11 112223334443 7788899888776544211133
Q ss_pred EEEe-CC-ceEEEEEeCCcEE--EEeeeccChhhhHHHHHHHHhCCC
Q psy16095 184 LYVS-GG-NTQVIAYSRQRYR--IFGETIDIAVGNCLDRFARVLKLS 226 (241)
Q Consensus 184 L~VS-GG-hT~l~~~~~~~~~--ilg~t~DdalGe~~Dkvar~LGl~ 226 (241)
.+++ || .+..+..++++.. .+++..--.-|.+++..|+.||++
T Consensus 244 TIIDIGGQDsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi~ 290 (404)
T TIGR03286 244 TVIDIGGMDNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKRLGVD 290 (404)
T ss_pred EEEEeCCCceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHHhCCC
Confidence 4444 55 5666655666655 445565666899999999999998
No 16
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.14 E-value=0.14 Score=45.40 Aligned_cols=104 Identities=23% Similarity=0.229 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccCCCCcEE
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK-GPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTV 183 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~-GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~~~~Pl~ 183 (241)
-+.+..++++++++.+++..+|..|++|. |.+... ++ + ..++-+.+|+..+.+..|..+ .+
T Consensus 34 ~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~~~~~v~-------~~-------~---~~~~ei~~~~~g~~~~~~~~~-~v 95 (248)
T TIGR00241 34 IEETARAILEALKEAGIGLEPIDKIVATGYGRHKVG-------FA-------D---KIVTEISCHGKGANYLAPEAR-GV 95 (248)
T ss_pred HHHHHHHHHHHHHHcCCChhheeEEEEECCCccccc-------cc-------C---CceEEhhHHHHHHHHHCCCCC-EE
Confidence 34455788899999999999999999863 222111 11 1 247788899888776554322 33
Q ss_pred EEEeCCceEEEEEeCCcEEEEeee--ccChhhhHHHHHHHHhCCC
Q psy16095 184 LYVSGGNTQVIAYSRQRYRIFGET--IDIAVGNCLDRFARVLKLS 226 (241)
Q Consensus 184 L~VSGGhT~l~~~~~~~~~ilg~t--~DdalGe~~Dkvar~LGl~ 226 (241)
+.+=|..|.+...+++++.-+.-. .----|.+++++++.||++
T Consensus 96 idiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~ 140 (248)
T TIGR00241 96 IDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLGVS 140 (248)
T ss_pred EEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcCCC
Confidence 333344577777777766533222 3445678999999999998
No 17
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=96.02 E-value=0.012 Score=55.67 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=42.9
Q ss_pred hhcccccCCCCc-EEEEEeC-Cc---eEEEEEeCCcEEEEee-eccCh---hhhHHHHHHHHhCCC
Q psy16095 170 EMGRNVTKCENP-TVLYVSG-GN---TQVIAYSRQRYRIFGE-TIDIA---VGNCLDRFARVLKLS 226 (241)
Q Consensus 170 ~sa~~~~~~~~P-l~L~VSG-Gh---T~l~~~~~~~~~ilg~-t~Dda---lGe~~Dkvar~LGl~ 226 (241)
+|+++.++++.. ++|++|| |. +.++..++++++.+.. ..+.+ +|.+|..++.+|||.
T Consensus 1 aSaf~~S~F~~a~~vlv~DG~Gd~~s~~~~~~~~~~~~~~~~~~~~~s~~slG~~Y~~~T~~lGf~ 66 (360)
T PF02543_consen 1 ASAFYPSPFDEACAVLVIDGGGDGESTSIYHARGGEIERIRESSYPHSGNSLGYFYEAITEYLGFK 66 (360)
T ss_dssp HHHHTTTS-SEE-EEEEESS-SSSEEEEEEEEETTEEEE--EEEEEGG-G-HHHHHHHHHHHTTS-
T ss_pred CcccCcCCCCcCeEEEEEECCCCCcceEEEEecCCEEEEeeeecCCchHHHHHHHHHHHHHhcCCC
Confidence 468889999888 9999997 33 4555578889988643 44655 999999999999998
No 18
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=95.94 E-value=0.046 Score=56.31 Aligned_cols=69 Identities=17% Similarity=0.085 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccCC-CCc-EEEE
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKC-ENP-TVLY 185 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~~-~~P-l~L~ 185 (241)
+...++.+.+-.++ ..|.|++-.-|+.++. .+|..+++|++.|-||.||+++...+++. +.| +.+.
T Consensus 401 ~~~~~~~~~~l~~~---~p~~i~~D~HP~y~st---------~~a~~~~~~~~~vQHH~AH~~a~mae~~l~~~~~lg~~ 468 (711)
T TIGR00143 401 FKEALNFFLRIYDF---EPQDIVCDLHPQYNTT---------QYAEELSLPVLRVQHHHAHALAVMADAGVLEEAVIGIT 468 (711)
T ss_pred HHHHHHHHHHHHCC---CCCEEEEeCCCCchhH---------HHHHHcCCCeeeeeHHHHHHHHHHHhcCCCcCCeEEEE
Confidence 34455555555555 4899999999998754 24566799999999999999998887776 557 6888
Q ss_pred EeC
Q psy16095 186 VSG 188 (241)
Q Consensus 186 VSG 188 (241)
.||
T Consensus 469 ~DG 471 (711)
T TIGR00143 469 WDG 471 (711)
T ss_pred EeC
Confidence 887
No 19
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=95.46 E-value=0.54 Score=45.31 Aligned_cols=103 Identities=21% Similarity=0.229 Sum_probs=69.3
Q ss_pred HHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccCCCCcEEEEEeCC
Q psy16095 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSGG 189 (241)
Q Consensus 110 ~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~~~~Pl~L~VSGG 189 (241)
.+++++|++.+.+..+|+.+++| | |+--. +...++... .++-+.+|...|.+..+..+ .++.+-|-
T Consensus 174 ~~l~~~le~l~~~~~~I~~~~~T-G---YGR~~--------v~~~~~aD~-~~~Ei~ah~kgA~~f~p~~d-tIiDIGGQ 239 (396)
T COG1924 174 KALKEALEELGEKLEEILGLGVT-G---YGRNL--------VGAALGADK-VVVEISAHAKGARYFAPDVD-TVIDIGGQ 239 (396)
T ss_pred HHHHHHHHHcccChheeeeeeee-c---ccHHH--------hhhhhcCCc-ceeeeehhHHHHHHhCCCCc-EEEEecCc
Confidence 57899999999999999999986 2 11111 222233332 36677899998887655322 33444333
Q ss_pred ceEEEEEeCCcE--EEEeeeccChhhhHHHHHHHHhCCC
Q psy16095 190 NTQVIAYSRQRY--RIFGETIDIAVGNCLDRFARVLKLS 226 (241)
Q Consensus 190 hT~l~~~~~~~~--~ilg~t~DdalGe~~Dkvar~LGl~ 226 (241)
-+-.+..++|.. -.+.+..--.-|.+++.+|+.||.+
T Consensus 240 D~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~Lgv~ 278 (396)
T COG1924 240 DSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRLGVD 278 (396)
T ss_pred ceeEEEEeCCeeeeeEeccccccccchHHHHHHHHhCCC
Confidence 466666555532 3447777888999999999999998
No 20
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=95.26 E-value=0.67 Score=43.14 Aligned_cols=104 Identities=15% Similarity=0.256 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccCCCCcEEEEE
Q psy16095 107 KVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYV 186 (241)
Q Consensus 107 ~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~~~~Pl~L~V 186 (241)
....+++++|++.|++.+|++.+++| |=| |..+.++. -.|+-+-+|+..+.+..+++--.++.+
T Consensus 69 ~a~~~l~~~l~~~g~~~~~v~~~~~T-GyG-----r~~~~~a~----------~~v~EItaha~Ga~~~~pp~v~tIIDI 132 (293)
T TIGR03192 69 SAKNALQGIMDKIGMKLEDINYVVGT-GYG-----RVNVPFAH----------KAITEIACHARGANYMGGNAVRTILDM 132 (293)
T ss_pred HHHHHHHHHHHHcCCcccceEEEEEE-Ccc-----hhhcchhh----------cceeeHHHHHHHHHHhcCCCCCEEEEe
Confidence 34568899999999988899988764 432 22222221 137788899998876653211133444
Q ss_pred eCCceEEEEE-eCCcEEEE--eeeccChhhhHHHHHHHHhCCC
Q psy16095 187 SGGNTQVIAY-SRQRYRIF--GETIDIAVGNCLDRFARVLKLS 226 (241)
Q Consensus 187 SGGhT~l~~~-~~~~~~il--g~t~DdalGe~~Dkvar~LGl~ 226 (241)
=|-.+.++.. +++++.-+ -+..----|.++|..++.||++
T Consensus 133 GGQDsK~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi~ 175 (293)
T TIGR03192 133 GGQDCKAIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDLMQIP 175 (293)
T ss_pred CCCceEEEEEcCCCcEeeeeecCcccccccHHHHHHHHHcCCC
Confidence 3445777765 56654332 3333456699999999999998
No 21
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=94.20 E-value=0.33 Score=41.25 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=20.7
Q ss_pred CeEEEEEeeCCCceeEEEEeCC
Q psy16095 1 MVIAIGFEGSANKLGIGIVDTK 22 (241)
Q Consensus 1 ~~~~~~~e~s~~~~~~~~~~~~ 22 (241)
||++||||-|-..||.||++.+
T Consensus 1 ~m~iLGIDPgl~~tG~avi~~~ 22 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVIEVE 22 (164)
T ss_pred CCEEEEEccccCceeEEEEEec
Confidence 8999999999999999999875
No 22
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=94.03 E-value=1.1 Score=41.96 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMG 138 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~ 138 (241)
.+++..+|.+++.++|+++++|+.+....+=.-.
T Consensus 48 ~~ni~~ai~~A~~~aG~~~~~i~~~~agla~ag~ 81 (301)
T COG2971 48 VRNIKDAIREALDEAGLKPDEIAAIVAGLALAGA 81 (301)
T ss_pred HHHHHHHHHHHHHhcCCCHHHhCceeeeeeccCc
Confidence 4567789999999999999999998876554333
No 23
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=92.91 E-value=3.9 Score=37.49 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccCCCCcEEEEEe
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVS 187 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~~~~Pl~L~VS 187 (241)
...+++++++++|++..|++.|+.| |=|- .+..+.+ .++.+.+|+..+.+..|... .++.+=
T Consensus 44 ~~~~l~~~~~~~g~~~~~i~~i~~T-GYGR------------~~~~a~~----~vtEIt~ha~GA~~~~p~~~-tIiDIG 105 (262)
T TIGR02261 44 AEDAYDDLLEEAGLAAADVAYCATT-GEGE------------SLAFHTG----HFYSMTTHARGAIYLNPEAR-AVLDIG 105 (262)
T ss_pred HHHHHHHHHHHcCCChhheEEEEEE-CCch------------hhhhhcC----CeeEEeHHHHHHHHHCCCCC-EEEEeC
Confidence 4568999999999988999998875 3111 1111111 24568899988877654211 344443
Q ss_pred CCceEEEEE-eCCcEEE--EeeeccChhhhHHHHHHHHhCCC
Q psy16095 188 GGNTQVIAY-SRQRYRI--FGETIDIAVGNCLDRFARVLKLS 226 (241)
Q Consensus 188 GGhT~l~~~-~~~~~~i--lg~t~DdalGe~~Dkvar~LGl~ 226 (241)
|-.+.++.. +++++.- +-+..----|.+++..|+.||++
T Consensus 106 GQD~K~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~i~ 147 (262)
T TIGR02261 106 ALHGRAIRMDERGKVEAYKMTSQCASGSGQFLENIARYLGIA 147 (262)
T ss_pred CCceEEEEEcCCCcEeeEEecCcccccccHHHHHHHHHhCCC
Confidence 445777665 5666542 23334556799999999999998
No 24
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.35 Score=49.80 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccCC--CCc-E
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKC--ENP-T 182 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~~--~~P-l 182 (241)
+.+-.+++..++--++++ |+|++---|...|- .+|..++.|++.|.||.||+++.....+. ..+ +
T Consensus 434 ~~~~ea~~~~~~~~~~~p---d~i~cDlHP~y~tt---------~~A~e~~~~~~~VqHH~AH~~a~mae~~~~~~~~vi 501 (750)
T COG0068 434 EFFREALRHFLKIYDFEP---DYIVCDLHPNYNTT---------KYAEEFALPLLQVQHHHAHALAVMAEHGLPLDEKVI 501 (750)
T ss_pred HHHHHHHHHHHHHhcCCC---ceEEEecCcccchh---------hHHHhhcccceeehhhHHHHHHHHhccCCCCCCceE
Confidence 445567888888777776 99999999987653 24555569999999999999998877764 334 6
Q ss_pred EEEEeC
Q psy16095 183 VLYVSG 188 (241)
Q Consensus 183 ~L~VSG 188 (241)
.+..||
T Consensus 502 ~ia~DG 507 (750)
T COG0068 502 GIALDG 507 (750)
T ss_pred EEEecC
Confidence 788886
No 25
>PLN02377 3-ketoacyl-CoA synthase
Probab=92.01 E-value=0.38 Score=47.86 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHH-HHHHHHhhCCCCcCCcCEEEEEcCCC
Q psy16095 99 ETAQHHKSKVLE-VLKEALDQAKVSRDDIDVICYTKGPG 136 (241)
Q Consensus 99 ~A~r~H~e~L~~-~I~~~L~~agi~~~DID~IAvt~GPG 136 (241)
..+|++.+.+.. +++++|+++|++++|||.|.|+.-|-
T Consensus 166 ~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~ 204 (502)
T PLN02377 166 AAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLF 204 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 345556666555 99999999999999999998866553
No 26
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=90.40 E-value=5.2 Score=36.11 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCC---Chh--------HHHHHHHHHHHHHhCCCeEEeccchhhhhh
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMG---GPL--------TVVAIVARTLALLWNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~---tgL--------RVG~s~Ak~LA~~l~iPli~V~HleaHa~s 171 (241)
-.+.+..++++++++.++...+|..|+++. ||.+ ++. --+..+.+.|...+++|++-.|...+.+++
T Consensus 36 ~~~~l~~~i~~~~~~~~~~~~~i~gIgva~-pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~ala 113 (318)
T TIGR00744 36 IVDAIASAVDSFIQHIAKVGHEIVAIGIGA-PGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALG 113 (318)
T ss_pred HHHHHHHHHHHHHHhcCCCccceEEEEEec-cccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHH
Confidence 466777889999999998888999999865 4422 111 013346677888899999988876666554
No 27
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=90.05 E-value=2.4 Score=36.93 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE-EcCCC
Q psy16095 100 TAQHHKSKVLEVLKEALDQAKVSRDDIDVICY-TKGPG 136 (241)
Q Consensus 100 A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv-t~GPG 136 (241)
....=-+.+..++++++++++....+|.+|++ +.+++
T Consensus 44 d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~~ 81 (245)
T PF00370_consen 44 DPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGHG 81 (245)
T ss_dssp -HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SSE
T ss_pred ChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccCC
Confidence 44445666778999999999999999999999 44765
No 28
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=86.73 E-value=0.79 Score=36.11 Aligned_cols=65 Identities=28% Similarity=0.296 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHH-HHHHHHh---CCCeEEeccchhhhhh
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVA-RTLALLW---NKPIVGVNHCIGHIEM 171 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~A-k~LA~~l---~iPli~V~HleaHa~s 171 (241)
..+..+++++|+++|++++|||.|-. .|+|.-.+=++-+... +.+.... .+|+..+--..+|..+
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~-hg~Gt~~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~~ 93 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEA-HGTGTPLGDAAEAEAIARVFGDSARQQPVPVGSVKSNIGHTEA 93 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE-----SSHHHHHHHHHHHHHHHGGGGGTSTSEEE-THHHH-B-GG
T ss_pred HHHHHHHHHHHhhhccccccceeeee-eccccccchhhhhhhhhhhhcccccccccceeccccccccccc
Confidence 34456799999999999999999985 5666554434444333 3333322 2677777777777765
No 29
>PRK00047 glpK glycerol kinase; Provisional
Probab=86.08 E-value=4.1 Score=39.70 Aligned_cols=34 Identities=32% Similarity=0.322 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTK-GPG 136 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~-GPG 136 (241)
.--+.+..+++++++++++..++|.+|+++. +.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~~ 86 (498)
T PRK00047 52 EIWASQLSVIAEALAKAGISPDQIAAIGITNQRET 86 (498)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHeeEEEEecCcce
Confidence 3456777899999999999889999999853 443
No 30
>PRK08304 stage V sporulation protein AD; Validated
Probab=86.03 E-value=2.5 Score=40.14 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
.+.+..+++++|+++|++++|||.+-+..-++.. ..+-.++..+++|.+.|+
T Consensus 57 seLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~-------~sAs~vA~~LGIPa~dV~ 108 (337)
T PRK08304 57 RKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQI-------ISANFAARELGIPFLGLY 108 (337)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCc-------chHHHHHHHhCCcEEEEe
Confidence 5566679999999999999999999987644311 122334556678888876
No 31
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=86.01 E-value=1.4 Score=40.36 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 102 QHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 102 r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
+...+.++.+++++|+++|++++|||.+.+..+ +.+ +.+.++..+++|
T Consensus 222 ~~~~~~~~~~i~~~L~~~g~~~~did~~~~hq~-----~~~----~~~~~~~~lgl~ 269 (326)
T CHL00203 222 KFAVFQVPAVIIKCLNALNISIDEVDWFILHQA-----NKR----ILEAIANRLSVP 269 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHH----HHHHHHHHhCCC
Confidence 344467888999999999999999999999776 333 345556666666
No 32
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=85.47 E-value=26 Score=31.07 Aligned_cols=108 Identities=23% Similarity=0.251 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEE-EcCCCCCCh-hHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccCCCCcE
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICY-TKGPGMGGP-LTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPT 182 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAv-t~GPGs~tg-LRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~~~~Pl 182 (241)
.++|..++++++++++.+..||+.+++ ..|=|...- -++...+.+. ++.-+|--....+.+. . .+-
T Consensus 41 ~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG~~~~~~~~~~~~~~~~~-------~v~~~~Da~~al~~~~----~-~~g 108 (271)
T PF01869_consen 41 MENIKEAIEEALSQAGLSPDDIAAICIGAAGYGRAGDEQEFQEEIVRS-------EVIVVNDAAIALYGAT----A-EDG 108 (271)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCEEEEEEEEEEETTTTTHHHHHHHHH-------EEEEEEHHHHHHHHHS----T-SSE
T ss_pred hhHHHHHHHHHHHHcCCCccccceeeeeEeeecCcccccchhhcceEE-------EEEEEHHHHHHhCCCC----C-CcE
Confidence 456778999999999999999998844 222222211 1222222221 6655554333333221 1 245
Q ss_pred EEEEeCCceEEEEEe-CCcEEEEeeec--cChhhhHHHHHHHHhC
Q psy16095 183 VLYVSGGNTQVIAYS-RQRYRIFGETI--DIAVGNCLDRFARVLK 224 (241)
Q Consensus 183 ~L~VSGGhT~l~~~~-~~~~~ilg~t~--DdalGe~~Dkvar~LG 224 (241)
+++++|--+-.+.++ +++....|.-= -.--|-.|+.-.+.|.
T Consensus 109 iv~I~GTGS~~~~~~~~g~~~r~gG~G~~~gD~GSg~~ig~~~L~ 153 (271)
T PF01869_consen 109 IVVIAGTGSIAYGRDRDGRVIRFGGWGHCLGDEGSGYWIGRRALR 153 (271)
T ss_dssp EEEEESSSEEEEEEETTSEEEEEEESCTTTTTTTSHHHHHHHHHH
T ss_pred EEEEcCCCceEEEEEcCCcEEEeCCCCCCcCCCCcHHHHHHHHHh
Confidence 666666445555565 77777776322 2233445555444443
No 33
>PLN02192 3-ketoacyl-CoA synthase
Probab=85.23 E-value=1.7 Score=43.39 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHH-HHHHHHhhCCCCcCCcCEEEEEcCCC
Q psy16095 99 ETAQHHKSKVLE-VLKEALDQAKVSRDDIDVICYTKGPG 136 (241)
Q Consensus 99 ~A~r~H~e~L~~-~I~~~L~~agi~~~DID~IAvt~GPG 136 (241)
.++|+..+.+.. +++++|+++|++++|||.|.|+..|.
T Consensus 170 ~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~ 208 (511)
T PLN02192 170 AEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLF 208 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 456666666655 99999999999999999998887765
No 34
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=84.51 E-value=4.6 Score=38.66 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCCC
Q psy16095 100 TAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTK-GPGM 137 (241)
Q Consensus 100 A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~-GPGs 137 (241)
......+.+..++++++++++++..+|.+|+++. +||.
T Consensus 42 d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~ 80 (481)
T TIGR01312 42 DPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGL 80 (481)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCcee
Confidence 3444567788899999999999889999999964 6764
No 35
>PRK13317 pantothenate kinase; Provisional
Probab=84.48 E-value=30 Score=31.73 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=56.9
Q ss_pred cCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhccccc-C---CCCcEEEEEeCCc-eEEEEEe
Q psy16095 123 RDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVT-K---CENPTVLYVSGGN-TQVIAYS 197 (241)
Q Consensus 123 ~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~-~---~~~Pl~L~VSGGh-T~l~~~~ 197 (241)
..++..|++|-+=+. .+++.+ .+++|++-|+-+.||...+.+.. . ...| .+++++|. +.+..++
T Consensus 45 ~~~~~~i~~TG~g~~--------~~~~~~--~~~~~~~~v~E~~a~~~g~~~l~~~~~~~~~~-~~i~~iG~g~si~~~~ 113 (277)
T PRK13317 45 LQDIEKICLTGGKAG--------YLQQLL--NYGYPIAEFVEFEATGLGVRYLLKEEGHDLND-YIFTNIGTGTSIHYVD 113 (277)
T ss_pred cCCceEEEEECcchh--------hhhHHH--hcCCCeeeeHHHHHHHHHHHHHHHhcCCCCCc-EEEEEecCceEEEEEe
Confidence 578999999855211 111111 47889988999999998876553 1 1233 46677664 5565567
Q ss_pred CCcEEEEeeeccChhhhHHHHHHHHh
Q psy16095 198 RQRYRIFGETIDIAVGNCLDRFARVL 223 (241)
Q Consensus 198 ~~~~~ilg~t~DdalGe~~Dkvar~L 223 (241)
+++++.++.|.--- | .++-++++|
T Consensus 114 g~~~~r~~Gt~iGG-g-t~~gL~~lL 137 (277)
T PRK13317 114 GNSQRRVGGTGIGG-G-TIQGLSKLL 137 (277)
T ss_pred CCceEEEccccccH-H-HHHHHHHHH
Confidence 77888888774221 4 777777777
No 36
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=84.42 E-value=8 Score=32.09 Aligned_cols=20 Identities=15% Similarity=0.537 Sum_probs=18.1
Q ss_pred EEEEEeeCCCceeEEEEeCC
Q psy16095 3 IAIGFEGSANKLGIGIVDTK 22 (241)
Q Consensus 3 ~~~~~e~s~~~~~~~~~~~~ 22 (241)
+|||||-|-..||.||++.+
T Consensus 1 rILGIDPGl~~~G~av~~~~ 20 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQE 20 (154)
T ss_pred CEEEEccCcCceEEEEEEee
Confidence 48999999999999999875
No 37
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=83.62 E-value=4.6 Score=38.30 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
..+....+++++|+++|++++|||.|-+..-|... ..+-.++..+++|.+.|+
T Consensus 50 e~eLa~eAa~~ALekAGL~~~DID~IIvGdl~~Q~-------~~As~vA~~LGIP~fdV~ 102 (327)
T TIGR02845 50 ERKLMEDAVNLALKKANLKKDDVDFFLAGDLLNQI-------ITANFVARDLGIPFLGLY 102 (327)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEeCCCCcc-------cHHHHHHHHhCCCEEEEe
Confidence 34556679999999999999999999886433211 123345667778888876
No 38
>PRK04123 ribulokinase; Provisional
Probab=83.43 E-value=6.5 Score=38.78 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
-+.+...++++++++++...+|.+|+++.
T Consensus 59 w~~~~~~i~~~~~~~~~~~~~I~aIgis~ 87 (548)
T PRK04123 59 IESLEAAIPAVLKEAGVDPAAVVGIGVDF 87 (548)
T ss_pred HHHHHHHHHHHHHHcCCChhhEEEEEEec
Confidence 45566788889999999888999999965
No 39
>PRK09698 D-allose kinase; Provisional
Probab=83.26 E-value=11 Score=33.82 Aligned_cols=62 Identities=18% Similarity=0.052 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCC----------Chh----HHHHHHHHHHHHHhCCCeEEeccchhhhh
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMG----------GPL----TVVAIVARTLALLWNKPIVGVNHCIGHIE 170 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~----------tgL----RVG~s~Ak~LA~~l~iPli~V~HleaHa~ 170 (241)
.+.+...|++++++.+ .++.+|+++. ||.+ +.+ --++.+++.|...+++|++-.|...+.++
T Consensus 44 ~~~l~~~i~~~~~~~~---~~i~gigia~-pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~ 119 (302)
T PRK09698 44 VSGLGEMIDEYLRRFN---ARCHGIVMGF-PALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLL 119 (302)
T ss_pred HHHHHHHHHHHHHHcC---CCeeEEEEeC-CcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHH
Confidence 6777788889998865 5788888865 4421 111 12345677888889999999997766554
No 40
>PLN02295 glycerol kinase
Probab=82.86 E-value=6.8 Score=38.42 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCC----cCEEEEEc-CCC
Q psy16095 102 QHHKSKVLEVLKEALDQAKVSRDD----IDVICYTK-GPG 136 (241)
Q Consensus 102 r~H~e~L~~~I~~~L~~agi~~~D----ID~IAvt~-GPG 136 (241)
..--+.+..++++++++++.+.++ |.+|+++. +.+
T Consensus 46 ~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s~q~~~ 85 (512)
T PLN02295 46 MEILESVLTCIAKALEKAAAKGHNVDSGLKAIGITNQRET 85 (512)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccccccceEEEEEecCcce
Confidence 344566778899999999988877 69999865 454
No 41
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=82.86 E-value=8.4 Score=37.79 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCCcCEEEEE-cCCC
Q psy16095 102 QHHKSKVLEVLKEALDQAKVSRDDIDVICYT-KGPG 136 (241)
Q Consensus 102 r~H~e~L~~~I~~~L~~agi~~~DID~IAvt-~GPG 136 (241)
..--+.+..+++++++++++...+|.+|+++ .+.+
T Consensus 51 ~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s~~~~~ 86 (520)
T PRK10939 51 EKNWQLACQCIRQALQKAGIPASDIAAVSATSMREG 86 (520)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEEEECCccc
Confidence 3345677788999999998888899999985 3443
No 42
>PLN02932 3-ketoacyl-CoA synthase
Probab=82.63 E-value=2.4 Score=41.99 Aligned_cols=35 Identities=11% Similarity=0.303 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHH-HHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 99 ETAQHHKSKVLE-VLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 99 ~A~r~H~e~L~~-~I~~~L~~agi~~~DID~IAvt~ 133 (241)
..+|++.+.+.. +++++|+++|++++|||.|.++.
T Consensus 142 ~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~t 177 (478)
T PLN02932 142 AVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNS 177 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 355666666555 99999999999999999997633
No 43
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=82.20 E-value=7.8 Score=38.37 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
.--+.+..++++++++++++.++|.+|+++..
T Consensus 47 ~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~ 78 (541)
T TIGR01315 47 YIWQAICNCVKQVLAESKVDPNSVKGIGFDAT 78 (541)
T ss_pred HHHHHHHHHHHHHHHHcCCChhheEEEEeccc
Confidence 34566777899999999988899999999874
No 44
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=81.47 E-value=4.8 Score=40.51 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=55.3
Q ss_pred eEEEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEe
Q psy16095 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILS 81 (241)
Q Consensus 2 ~~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 81 (241)
-+.||+|=-..--=++|+|...+ ++|+
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~~G-----------------------------------------------------~~la 29 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQTG-----------------------------------------------------TLLA 29 (544)
T ss_pred cEEEEEeecCCceeEEEEEcCCC-----------------------------------------------------cchh
Confidence 46889987777777888888544 3444
Q ss_pred eeeeecccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 82 NCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 82 ~~~~s~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
..+..+.+..-+.-.+|.-++.-.+.+-.+|+++++++|+.+.+|-+|+|.
T Consensus 30 ~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvD 80 (544)
T COG1069 30 RAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVD 80 (544)
T ss_pred hcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEc
Confidence 444443322223344566777777778889999999999999999999873
No 45
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=81.16 E-value=11 Score=36.72 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCcC--CcCEEEEEc-CCC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRD--DIDVICYTK-GPG 136 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~--DID~IAvt~-GPG 136 (241)
.--+.+..++++++++++.... +|.+|+++. +.+
T Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis~q~~~ 85 (504)
T PTZ00294 49 EILRNVYKCMNEAIKKLREKGPSFKIKAIGITNQRET 85 (504)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCceEEEEeecCcce
Confidence 3456667788899988887766 899999854 443
No 46
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=80.62 E-value=6 Score=39.43 Aligned_cols=33 Identities=33% Similarity=0.313 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPG 136 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPG 136 (241)
--++...+++++++++++++.||.+|++|+--.
T Consensus 53 Iw~~~~~~l~~a~~~~~i~~~~iaaIGITNQRE 85 (499)
T COG0554 53 IWASVRSVLKEALAKAGIKPGEIAAIGITNQRE 85 (499)
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEEeeccce
Confidence 344455688899999999999999999998653
No 47
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=80.26 E-value=0.78 Score=43.61 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=32.4
Q ss_pred cccccccc--CCCCCCCCCchhhccccc---hhhhhhhhhhhc
Q psy16095 28 SNCRRTYV--TPPGEGFLPRETAQHHKS---KVLEEKFDYLSQ 65 (241)
Q Consensus 28 ~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 65 (241)
+|...+|+ .+++.|+.|+..|.||.+ ++|++.|..+..
T Consensus 25 an~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~ 67 (342)
T COG0533 25 ANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGV 67 (342)
T ss_pred heehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46677899 999999999999999988 778888876655
No 48
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=80.23 E-value=13 Score=32.82 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCC------------CChhHHHHHHHHHHHHHhCCCeEEeccchhhhhh
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGM------------GGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs------------~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~s 171 (241)
+...+.+++++.......+.+|+++. ||. +.+. -+..+++.|...+++|++--|...+.+++
T Consensus 39 ~~~~i~~~i~~~~~~~~~~~gIgv~~-pG~vd~~~g~i~~~~~~~w-~~~~l~~~l~~~~~~pV~leNDanaaAla 112 (256)
T PRK13311 39 LLQILRDLTEEADTYCGVQGSVGIGI-PGLPNADDGTVFTANVPSA-MGQPLQADLSRLIQREVRIDNDANCFALS 112 (256)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEe-cCcEECCCCEEEccCCCcc-cCCChHHHHHHHHCCCEEEEchhhHHHHH
Confidence 34455566655533223345777753 441 1222 25677888999999999988876666554
No 49
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=80.16 E-value=45 Score=30.06 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=73.1
Q ss_pred CeEEEEEeeCCCceeEEEEeCCCCceeccccccccCCCCCCCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEE
Q psy16095 1 MVIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTIL 80 (241)
Q Consensus 1 ~~~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 80 (241)
|+.+||||=..+++-++++|.+ |+++
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~------------------------------------------------------g~~l 30 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLD------------------------------------------------------GEIL 30 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCC------------------------------------------------------CcEE
Confidence 5789999999999999999985 4455
Q ss_pred eeeeeecccCCCCcccchhhh-HHHHHHHHHHHHHHHhhCCCCcCCcCEEEE-EcCCCCCC-----------hhHHHHHH
Q psy16095 81 SNCRRTYVTPPGEGFLPRETA-QHHKSKVLEVLKEALDQAKVSRDDIDVICY-TKGPGMGG-----------PLTVVAIV 147 (241)
Q Consensus 81 ~~~~~s~~~~~~gGvvPe~A~-r~H~e~L~~~I~~~L~~agi~~~DID~IAv-t~GPGs~t-----------gLRVG~s~ 147 (241)
...+.... .... ..=.+.|...+++++++.+ .+.+.|++ ..+||... ..+-...+
T Consensus 31 ~~~~~~~~---------~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~iGIgi~~pg~~~~~~~~~~~~~~~~~~~~~l 98 (314)
T COG1940 31 LRERIPTP---------TPDPEEAILEAILALVAELLKQAQ---GRVAIIGIGIPGPGDVDNGTVIVPAPNLGWWNGVDL 98 (314)
T ss_pred EEEEEecC---------CCCchhHHHHHHHHHHHHHHHhcC---CcCceEEEEeccceeccCCcEEeecCCCCccccccH
Confidence 55544321 1111 2346678888999998876 45666665 34776532 22334568
Q ss_pred HHHHHHHhCCCeEEeccchhhhhhcc
Q psy16095 148 ARTLALLWNKPIVGVNHCIGHIEMGR 173 (241)
Q Consensus 148 Ak~LA~~l~iPli~V~HleaHa~sa~ 173 (241)
++.|...+++|+.--|...+-+++-.
T Consensus 99 ~~~L~~~~~~Pv~veNDan~aalaE~ 124 (314)
T COG1940 99 AEELEARLGLPVFVENDANAAALAEA 124 (314)
T ss_pred HHHHHHHHCCCEEEecHHHHHHHHHH
Confidence 89999999999998887666555433
No 50
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=79.73 E-value=3.5 Score=33.18 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhhcccccC-----C-
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTK-----C- 178 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~~~~-----~- 178 (241)
.+.+..+|+++|++.++++.+|+.||....-.--.+ ...+|..+++|++.++--+--.....-.++ .
T Consensus 14 ~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~-------l~~~A~~l~~~~~~~~~eeL~~~~~~~~S~~v~~~~G 86 (121)
T PF01890_consen 14 AEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPG-------LLELAEELGIPLRFFSAEELNAVEVPTPSEFVKKTTG 86 (121)
T ss_dssp HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HH-------HHHHHHHCTSEEEEE-HHHHHCHHCSCT-CHHHCCCS
T ss_pred HHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHH-------HHHHHHHhCCCeEEECHHHHhcCCCCCCCHHHHHHcC
Confidence 356778999999999999999999997543322233 356888999999999732221111111121 1
Q ss_pred ----CCcEEEEEeCCceEEEE
Q psy16095 179 ----ENPTVLYVSGGNTQVIA 195 (241)
Q Consensus 179 ----~~Pl~L~VSGGhT~l~~ 195 (241)
..|.+++.+|.+..++.
T Consensus 87 v~sVaEaaAl~aag~~~~Li~ 107 (121)
T PF01890_consen 87 VGSVAEAAALLAAGPGGRLIV 107 (121)
T ss_dssp SS-HHHHHHHHHHSTTEEECS
T ss_pred CchHHHHHHHHhcCCCCeEEE
Confidence 12445666777777665
No 51
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=79.61 E-value=11 Score=36.63 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEE-cCCC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYT-KGPG 136 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt-~GPG 136 (241)
.--+.+..+++++++++++.+++|.+|+++ .+.+
T Consensus 48 ~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~~~ 82 (493)
T TIGR01311 48 EIWESVLSCIAEALAKAGIKPDDIAAIGITNQRET 82 (493)
T ss_pred HHHHHHHHHHHHHHHHcCCChhheeEEEEecCcce
Confidence 345677788999999999988999999984 4443
No 52
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=79.09 E-value=14 Score=36.30 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEE-EcCCCC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICY-TKGPGM 137 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAv-t~GPGs 137 (241)
.=-+.+..+++++++++.+..++|.+|++ +.+.|.
T Consensus 52 ~~w~~~~~ai~~l~~~~~~~~~~I~aI~is~~~~g~ 87 (502)
T COG1070 52 ELWQAILEALRQLLEESKIDPDAIAAIGISGQGHGL 87 (502)
T ss_pred HHHHHHHHHHHHHHHhcccChhhceEEEEeccccce
Confidence 34456777899999999999999999998 567773
No 53
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....
Probab=78.57 E-value=2.9 Score=37.67 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
+..-.+++++|+++++++++||.|.+.+--+...+..++...+.......++|.+.|+.
T Consensus 28 ~L~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~g~~~ar~~~l~aGl~~~vp~~~V~~ 86 (264)
T PF00108_consen 28 DLAAEAVKAALERAGIDPEDIDAVIVGNVLQEGEGQNIARQAALAAGLPESVPATTVNR 86 (264)
T ss_dssp HHHHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTTTCHHHHHHHHHTTS-TTSEEEEEE-
T ss_pred HHHHHHHHHHHHhcccchhhhhhcCcccccccccchhhhhhhhhhcccccccceeeehh
Confidence 33445999999999999999999999765443334444433332222234567777775
No 54
>PRK03011 butyrate kinase; Provisional
Probab=78.25 E-value=21 Score=33.96 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCCcCCcCEEEEEcC---C---CCC-----------------ChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 110 EVLKEALDQAKVSRDDIDVICYTKG---P---GMG-----------------GPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 110 ~~I~~~L~~agi~~~DID~IAvt~G---P---Gs~-----------------tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
.+|.++|++.|+.+++||+|+---| | |.+ ..--.|.-.|..++..+++|++-++.
T Consensus 52 ~~i~~~l~~~g~~~~~l~av~~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~~p~~v~D~ 129 (358)
T PRK03011 52 QAILDFLKEHGIDLSELDAVVGRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELGIPAFIVDP 129 (358)
T ss_pred HHHHHHHHHcCCChhcceEEEEcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCCEEEECC
Confidence 5788889999999999999943211 1 221 11122556677777778999877764
No 55
>PLN02854 3-ketoacyl-CoA synthase
Probab=78.06 E-value=4.4 Score=40.62 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHH-HHHHHHhhCCCCcCCcCEEEEEcCC
Q psy16095 99 ETAQHHKSKVLE-VLKEALDQAKVSRDDIDVICYTKGP 135 (241)
Q Consensus 99 ~A~r~H~e~L~~-~I~~~L~~agi~~~DID~IAvt~GP 135 (241)
..+|...+.+.. +++++|+++|++++|||.|.|+..|
T Consensus 182 ~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~ 219 (521)
T PLN02854 182 EEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSL 219 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCC
Confidence 345555555544 9999999999999999999987665
No 56
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=77.77 E-value=5.7 Score=32.20 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
+.+...|+++|++.|+.+.+|+.|+...--.--.+| ..+|..+++|+..++
T Consensus 17 e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L-------~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 17 EQIEAAIRAALAQRPLASADVRVVATLDLKADEAGL-------LALCARHGWPLRAFS 67 (126)
T ss_pred HHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHH-------HHHHHHhCCCeEEeC
Confidence 346778999999999999999999975322222233 457788999999985
No 57
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=77.74 E-value=3.4 Score=37.65 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCe
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPI 159 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPl 159 (241)
.+.++.+++++|+++|++++|||.+.+-.. +.++ .+.++..+++|-
T Consensus 229 ~~~~~~~i~~~L~~~gl~~~did~~~~H~~-----~~~~----~~~i~~~l~l~~ 274 (329)
T PRK07204 229 SKYLMKFIDKLLMDAGYTLADIDLIVPHQA-----SGPA----MRLIRKKLGVDE 274 (329)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEeCCC-----CHHH----HHHHHHHcCCCH
Confidence 345778999999999999999999998665 3333 455666667663
No 58
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=76.51 E-value=3.4 Score=38.51 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=28.3
Q ss_pred hhhHHHHHH-HHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 99 ETAQHHKSK-VLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 99 ~A~r~H~e~-L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
.+++...+. +..+++++|+++|++++|||.+.|+..
T Consensus 77 ~~a~~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs 113 (290)
T PF08392_consen 77 AAAREEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCS 113 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECc
Confidence 345555554 445999999999999999999988654
No 59
>PLN00415 3-ketoacyl-CoA synthase
Probab=76.10 E-value=7.5 Score=38.53 Aligned_cols=35 Identities=9% Similarity=0.248 Sum_probs=26.9
Q ss_pred hHHHHHH-HHHHHHHHHhhCCCCcCCcCEEEEEcCC
Q psy16095 101 AQHHKSK-VLEVLKEALDQAKVSRDDIDVICYTKGP 135 (241)
Q Consensus 101 ~r~H~e~-L~~~I~~~L~~agi~~~DID~IAvt~GP 135 (241)
+|+-++. +..+++++|+++|++++|||.|.|+.-|
T Consensus 130 ~~~e~em~i~~A~~~aL~~aGi~p~dID~LIvs~T~ 165 (466)
T PLN00415 130 ARHESELVIFGALNSLFKKTGIEPREVGIFIVNCSL 165 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcC
Confidence 3444444 4449999999999999999998887654
No 60
>PRK09557 fructokinase; Reviewed
Probab=75.55 E-value=28 Score=31.28 Aligned_cols=30 Identities=10% Similarity=-0.059 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCCeEEeccchhhhhhcc
Q psy16095 144 VAIVARTLALLWNKPIVGVNHCIGHIEMGR 173 (241)
Q Consensus 144 G~s~Ak~LA~~l~iPli~V~HleaHa~sa~ 173 (241)
+..+.+.|...+++|++-.|...+.+++-+
T Consensus 85 ~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~ 114 (301)
T PRK09557 85 GQPLDKDLSARLNREVRLANDANCLAVSEA 114 (301)
T ss_pred CCCHHHHHHHHHCCCEEEccchhHHHHHHH
Confidence 445667788888999998887776665543
No 61
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=75.35 E-value=5.5 Score=35.98 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
.+.++.+++++|+++|++++|||.+.+..+ +.++ .+.++..+++|
T Consensus 224 ~~~~~~~i~~~L~~~g~~~~did~~~~h~~-----~~~~----~~~~~~~lg~~ 268 (325)
T PRK12879 224 VRTMPKGARQVLEKAGLTKDDIDWVIPHQA-----NLRI----IESLCEKLGIP 268 (325)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHH----HHHHHHHcCCC
Confidence 456778999999999999999999998754 3333 33455555665
No 62
>PRK15027 xylulokinase; Provisional
Probab=75.13 E-value=18 Score=35.07 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTK-GPG 136 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~-GPG 136 (241)
.--+.+..++++++++. ..++|.+|++|. +.|
T Consensus 47 ~~w~~~~~~~~~l~~~~--~~~~I~aI~is~q~~~ 79 (484)
T PRK15027 47 QWWQATDRAMKALGDQH--SLQDVKALGIAGQMHG 79 (484)
T ss_pred HHHHHHHHHHHHHHHhC--CccceeEEEEecCCCc
Confidence 34566667788888765 457899999964 444
No 63
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=74.92 E-value=7.9 Score=32.15 Aligned_cols=20 Identities=10% Similarity=0.416 Sum_probs=16.2
Q ss_pred EEEEeeCCCceeEEEEeCCC
Q psy16095 4 AIGFEGSANKLGIGIVDTKK 23 (241)
Q Consensus 4 ~~~~e~s~~~~~~~~~~~~~ 23 (241)
|||||-|...||.||++.+.
T Consensus 1 ILGIDPgl~~tG~avi~~~~ 20 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDG 20 (149)
T ss_dssp EEEEE--SSEEEEEEEEEET
T ss_pred CEEECCCCCCeeEEEEEeeC
Confidence 79999999999999999853
No 64
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=74.89 E-value=4.7 Score=38.94 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhC----CCeEEecc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWN----KPIVGVNH 164 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~----iPli~V~H 164 (241)
.+....+++++|+++|++++|||.|.+.+......+ ...++.++...+ +|...|+.
T Consensus 30 ~eL~~~a~~~al~~agl~~~~ID~vi~G~~~~~~~~----~~~ar~~a~~aGl~~~~P~~tV~~ 89 (428)
T PRK08963 30 VDLGKMVVGELLARSEIDPELIEQLVFGQVVQMPEA----PNIAREIVLGTGMNVHTDAYSVSR 89 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCc----cHHHHHHHHHCCCCCCCcceeehh
Confidence 444567999999999999999999999765443332 223444444444 56666654
No 65
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=74.36 E-value=4.6 Score=38.37 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 102 QHHKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 102 r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
+...+....+++.+|+++|++++|||.|.+.+-
T Consensus 24 ~~~~~L~~~a~~~al~dagi~~~dID~vi~g~~ 56 (388)
T PRK06366 24 IKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNV 56 (388)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence 445666777999999999999999999988643
No 66
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=74.27 E-value=4.1 Score=38.90 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcC-CCCCChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKG-PGMGGPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~G-PGs~tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
.+....+++++|+++|++++|||.|.+.+. |... +.-.+...+..+....++|.+.|+.
T Consensus 27 ~eLa~~A~~~aL~~agl~~~dID~vi~g~~~~~~~-~~~~~~~~~~~~Gl~~~~p~~~V~~ 86 (393)
T PRK08235 27 TELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQ-GQIPSRQAARAAGIPWEVQTETVNK 86 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCC-CCCHHHHHHHHcCCCCCcceeehhh
Confidence 444556899999999999999999998653 3211 2222222333333334577777763
No 67
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=74.24 E-value=5.2 Score=38.25 Aligned_cols=31 Identities=13% Similarity=0.351 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
-.+....+++++|+++|++++|||.|.+.+-
T Consensus 26 ~~eLa~~A~~~AL~~agl~~~dID~vv~g~~ 56 (404)
T PRK06205 26 AEELAATVIRALVERTGIDPARIDDVIFGQG 56 (404)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence 3455566899999999999999999998654
No 68
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=74.19 E-value=32 Score=25.27 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCCh-----hHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 107 KVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGP-----LTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 107 ~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tg-----LRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
.+...+.+++++. ++++|++. .||...| +. ..+.+.|...+++|++-+|-
T Consensus 38 ~~~~~l~~~i~~~-----~~~~i~Ig-~pg~v~g~~~~~~~--~~l~~~l~~~~~~pv~~~nD 92 (99)
T smart00732 38 ADAARLKKLIKKY-----QPDLIVIG-LPLNMNGTASRETE--EAFAELLKERFNLPVVLVDE 92 (99)
T ss_pred hHHHHHHHHHHHh-----CCCEEEEe-CCcCCCCCcCHHHH--HHHHHHHHHhhCCcEEEEeC
Confidence 3445666666653 58899986 4554322 22 56667777778888887763
No 69
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=73.26 E-value=6.9 Score=36.67 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHh--CCCeEEeccchhhhhhc
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLW--NKPIVGVNHCIGHIEMG 172 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l--~iPli~V~HleaHa~sa 172 (241)
+.+..+++++|+++|++++|||.|- ..|.|...+=..-....+.+-... .+|+..+-.+.+|..++
T Consensus 274 ~~~~~a~~~Al~~Agi~~~dId~i~-~hgtgt~~~D~~E~~ai~~~~~~~~~~~~v~s~K~~~Gh~~~A 341 (407)
T cd00828 274 KGIARAIRTALAKAGLSLDDLDVIS-AHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGA 341 (407)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEe-cccccCccccHHHHHHHHHHHhccCCCceeecccchhccchhh
Confidence 4455689999999999999999984 567665433222222222221111 46777777777776643
No 70
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=72.64 E-value=41 Score=30.19 Aligned_cols=28 Identities=7% Similarity=-0.130 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCeEEeccchhhhhhc
Q psy16095 145 AIVARTLALLWNKPIVGVNHCIGHIEMG 172 (241)
Q Consensus 145 ~s~Ak~LA~~l~iPli~V~HleaHa~sa 172 (241)
+.+.+.|+..+++|++-.|...+.+++-
T Consensus 86 ~~l~~~l~~~~~~pV~ieNDa~aaalaE 113 (303)
T PRK13310 86 KPLRADLSARLGRDVRLDNDANCFALSE 113 (303)
T ss_pred CcHHHHHHHHHCCCeEEeccHhHHHHHH
Confidence 4567788888999999888777666553
No 71
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=72.60 E-value=5.3 Score=38.16 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCCCCChhHHHHHHHHHHHHHhC----CCeEEecc
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTK-GPGMGGPLTVVAIVARTLALLWN----KPIVGVNH 164 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~-GPGs~tgLRVG~s~Ak~LA~~l~----iPli~V~H 164 (241)
+....+++++|+++|++++|||.|.+.+ -|+.+.+- ..++.++..++ +|.+-|+.
T Consensus 29 dL~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~----~~a~~i~~~lGl~~~~p~~~V~~ 88 (392)
T PRK07108 29 TLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGA----NIARQIALRAGLPVTVPGMTVNR 88 (392)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCcEEEEEeeccccccc----HHHHHHHHHcCCCCCCceeeecc
Confidence 3444589999999999999999999854 34443321 24555555545 77777764
No 72
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=72.37 E-value=6.3 Score=35.97 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
.+...++.+++++|+++|++++|||.+.+-.+ +.++ .+.++..+++|
T Consensus 236 ~~~~~~~~~~~~~L~~~g~~~~did~~i~H~~-----~~~~----~~~~~~~lgl~ 282 (338)
T PRK09258 236 EGVELAVDTWEAFLAQLGWAVEQVDRVICHQV-----GAAH----TRAILKALGID 282 (338)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEecCCC-----CHHH----HHHHHHHhCCC
Confidence 34556777999999999999999999998775 3333 34455555665
No 73
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=71.86 E-value=5.4 Score=37.96 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
.+....+++++|+++|++++|||.|.+..-
T Consensus 27 ~~La~~A~~~AL~~agl~~~dID~vi~g~~ 56 (393)
T PRK05656 27 VELGAAVIRRLLEQTGLDPAQVDEVILGQV 56 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEEe
Confidence 344456999999999999999999998554
No 74
>PRK09051 beta-ketothiolase; Provisional
Probab=71.66 E-value=6.6 Score=37.56 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCC-ChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMG-GPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~-tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
..+....+++++|+++|++++|||.|.+.+.-..+ ...-++...+..+....++|.+.|+.
T Consensus 27 ~~eL~~~A~~~AL~~agi~~~dID~vi~g~~~~~~~~~~~~a~~~~~~~Gl~~~~p~~~V~~ 88 (394)
T PRK09051 27 PTDLGATVVREALARAGVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGVPQETPAFNVNR 88 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcCEEEEeeeccccCCCccHHHHHHHHcCCCCCCceEEecc
Confidence 35555669999999999999999999885432211 11112332322222112478777764
No 75
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=70.93 E-value=6.2 Score=37.41 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
..+....+++++|+++|++++|||.|.+..
T Consensus 21 ~~~La~~A~~~Al~dAgl~~~dID~vv~g~ 50 (386)
T TIGR01930 21 AEDLGAAVIKELLERNPLDPELIDDVIFGN 50 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 455566799999999999999999998854
No 76
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=70.22 E-value=8.2 Score=36.39 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCe
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPI 159 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPl 159 (241)
...++.+++++|+++|++++|||.+.+..+ +.+ +.+.++..+++|-
T Consensus 279 ~~~~~~~i~~~L~~~gl~~~dId~~v~Hq~-----n~~----~~~~~~~~Lgl~~ 324 (379)
T PLN02326 279 VRCVPQVIESALQKAGLTAESIDWLLLHQA-----NQR----IIDAVAQRLGIPP 324 (379)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHH----HHHHHHHHcCCCH
Confidence 345778999999999999999999998776 333 3445666667763
No 77
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=69.88 E-value=24 Score=34.77 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.--+.+..+++++++++++..++|.+|+++.
T Consensus 60 ~~w~~~~~~~~~~~~~~~~~~~~I~aI~~s~ 90 (536)
T TIGR01234 60 DYIEVLEAAIPTVLAELGVDPADVVGIGVDF 90 (536)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEec
Confidence 3456677789999999988888999999976
No 78
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=69.61 E-value=30 Score=33.80 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTK-GPG 136 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~-GPG 136 (241)
.--+.+...+++++++.+.+ .+|.+|+++. +.+
T Consensus 47 ~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~~~~~ 80 (505)
T TIGR01314 47 EIFEAVLVTIREVSINLEDE-DEILFVSFSTQMHS 80 (505)
T ss_pred HHHHHHHHHHHHHHHhCCCc-CceEEEEEecccce
Confidence 34567778889999887776 7899999954 554
No 79
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=69.03 E-value=7.6 Score=35.41 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCCCC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK-GPGMG 138 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~-GPGs~ 138 (241)
.+....+++++|+++|++++|||.|.+.. .|+..
T Consensus 62 ~~la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~ 96 (338)
T PRK09258 62 SDGAIAAGRKALAEAGIDPSDIGLLINTSVCRDYL 96 (338)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCC
Confidence 34556699999999999999999998743 45443
No 80
>PRK06840 hypothetical protein; Validated
Probab=68.83 E-value=8.2 Score=35.34 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 107 KVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 107 ~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
.++.+++++|+++|++++|||.+..... +.++ .+.++..+++|
T Consensus 238 ~~~~~i~~~L~~~gl~~~did~~~~h~~-----~~~~----~~~~~~~Lgl~ 280 (339)
T PRK06840 238 NFLKVIREALRKSGYTPKDIDYLAILHM-----KRSA----HIALLEGLGLT 280 (339)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECCc-----CHHH----HHHHHHHcCCC
Confidence 4668999999999999999999987654 2333 23455566665
No 81
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=68.77 E-value=9.4 Score=34.20 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
.+.++.+++++|+++|++++|||.+.+..+ +.+ +.+.++..+++|
T Consensus 222 ~~~~~~~i~~~l~~~g~~~~di~~~~~h~~-----~~~----~~~~~~~~lgl~ 266 (320)
T cd00830 222 VRLMPESIEEALEKAGLTPDDIDWFVPHQA-----NLR----IIEAVAKRLGLP 266 (320)
T ss_pred HHhhHHHHHHHHHHcCCCHHHCCEEEECCC-----CHH----HHHHHHHHhCCC
Confidence 345677999999999999999999998765 333 334455556665
No 82
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=68.55 E-value=5.6 Score=37.52 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
..+....+++++|+++|++++|||.|.+...
T Consensus 22 ~~~La~~A~~~AL~dAgl~~~dID~vi~~~~ 52 (386)
T cd00751 22 ADDLGAAVIKALLERAGLDPEEVDDVIMGNV 52 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCCEEEEEec
Confidence 3455566999999999999999999998644
No 83
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=67.88 E-value=16 Score=31.31 Aligned_cols=51 Identities=22% Similarity=0.098 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhCCCCcCCcCEEEEEcC-CCC-CChhHHHHHHHHHHHHHhCC---CeEEec
Q psy16095 107 KVLEVLKEALDQAKVSRDDIDVICYTKG-PGM-GGPLTVVAIVARTLALLWNK---PIVGVN 163 (241)
Q Consensus 107 ~L~~~I~~~L~~agi~~~DID~IAvt~G-PGs-~tgLRVG~s~Ak~LA~~l~i---Pli~V~ 163 (241)
....+++++|+++|++++|||.|.+... |.. .. +.+..++..++. |.+.++
T Consensus 10 l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~------~~a~~i~~~lg~~~~~~~~i~ 65 (254)
T cd00327 10 LGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFS------GAAGQLAYHLGISGGPAYSVN 65 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEEECCCCcccc------HHHHHHHHHhCCCCCCcceec
Confidence 3445899999999999999999998543 432 22 233345555554 666555
No 84
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=67.73 E-value=8.1 Score=36.26 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCe
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPI 159 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPl 159 (241)
.++++..++++|+++|++.+|||.+.+..+ +.|+ .+.+...+++|-
T Consensus 241 ~~~~~~~i~~~L~~~gl~~~did~~v~HQ~-----~~~i----~~~i~~~Lgl~~ 286 (353)
T PRK12880 241 LECEPKSFKEILEFSKVDEKDIAFHLFHQS-----NAYL----VDCIKEELKLND 286 (353)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHH----HHHHHHHhCCCH
Confidence 455778999999999999999999999887 4444 344555556654
No 85
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=67.61 E-value=7.9 Score=36.97 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++++|+++|++++|||.|.+.+
T Consensus 32 ~eL~~~a~~~aL~~Agi~~~dID~vi~G~ 60 (397)
T PRK06954 32 PQLGAAAIAAAVERAGLKPEQIDEVVMGC 60 (397)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcCEEEEEe
Confidence 34455699999999999999999999864
No 86
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=67.60 E-value=9.6 Score=34.65 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
-.+.++..++++|+++|++++|||.+....+
T Consensus 225 ~~~~~~~~~~~~L~~~gl~~~did~~~~h~~ 255 (326)
T PRK05963 225 AVRMMSGASQNVLASAAMTPQDIDRFFPHQA 255 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEeCCC
Confidence 3456778999999999999999999998554
No 87
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=67.51 E-value=9.6 Score=36.31 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
-.+....+++++|+++|++++|||.|.+..
T Consensus 25 ~~~L~~~a~~~al~dAgl~~~~ID~vv~g~ 54 (394)
T PLN02644 25 ATELGSIAIQAALERAGVDPALVQEVFFGN 54 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 455666799999999999999999998754
No 88
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=67.41 E-value=8.2 Score=37.08 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcC-CCCCChhHHHHHHHHHHHHHhC----CCeEEecc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKG-PGMGGPLTVVAIVARTLALLWN----KPIVGVNH 164 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~G-PGs~tgLRVG~s~Ak~LA~~l~----iPli~V~H 164 (241)
.+....+++++|+++|++++|||.+.+.+- ++.+.+ ...++.++...+ +|.+.|+.
T Consensus 27 ~eL~~~a~~~al~~agi~~~~Id~v~~G~~~~~~~~~----~~~ar~~~~~~Glp~~~p~~tV~~ 87 (401)
T PRK08131 27 DDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGEDS----RNVARNALLLAGLPVTVPGQTVNR 87 (401)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccc----ccHHHHHHHhcCCCCCCceeeeec
Confidence 445556999999999999999999998653 433322 122333333333 55777764
No 89
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=67.36 E-value=9.6 Score=36.51 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHh---CCCeEEecc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLW---NKPIVGVNH 164 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l---~iPli~V~H 164 (241)
.+....+++++|+++|++++|||.+.+..-|..+.+.. ..+..|+..+ ++|...|+.
T Consensus 30 ~~L~~~A~~~Al~dagl~~~dID~~i~~~~~~~~~~~~---~~a~~l~~~lG~~~~~~~~V~~ 89 (392)
T PRK06065 30 QELAWEAASKALDEAGLELKDIDCVVIGSAPDAFDGVH---MKGEYLSHGSGGIRKPVSRVYV 89 (392)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCcccccc---cHHHHHHHHcCCCCCCeEEEec
Confidence 45566799999999999999999998865455444322 1233344433 377777753
No 90
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=67.04 E-value=5.5 Score=38.23 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 107 KVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 107 ~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
....+++++|+++|++++|||.|.+.+-
T Consensus 30 L~~~a~~~al~~agi~~~~Id~vv~G~~ 57 (392)
T PRK06633 30 LAAHLIKDILQNSKIDPALVNEVILGQV 57 (392)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEEEEec
Confidence 3445899999999999999999999654
No 91
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=66.99 E-value=11 Score=33.90 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCe
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPI 159 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPl 159 (241)
.-...+..+++++|+++|++++|||.+..-.+ +. .+.+.++..+++|.
T Consensus 216 ~~~~~~~~~i~~~l~~~g~~~~di~~~~~h~~-----~~----~~~~~~~~~lg~~~ 263 (319)
T PRK09352 216 FAVRELAKVAREALEAAGLTPEDIDWLVPHQA-----NL----RIIDATAKKLGLPM 263 (319)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CH----HHHHHHHHHhCCCH
Confidence 33456777999999999999999999998543 22 23344566666664
No 92
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=66.90 E-value=8.8 Score=35.59 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCC
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPG 136 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPG 136 (241)
...+.+++|+++|++++|||.+.+....+
T Consensus 89 a~~Aa~~aL~~a~~~~~~Id~li~~s~~~ 117 (361)
T cd00831 89 AEEAARGALDEAGLRPSDIDHLVVNTSTG 117 (361)
T ss_pred HHHHHHHHHHHhCCCHHHCCEEEEECCCC
Confidence 34499999999999999999998855444
No 93
>PLN02669 xylulokinase
Probab=65.89 E-value=27 Score=34.92 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=18.1
Q ss_pred EEEEEeeCCCceeEEEEeCC
Q psy16095 3 IAIGFEGSANKLGIGIVDTK 22 (241)
Q Consensus 3 ~~~~~e~s~~~~~~~~~~~~ 22 (241)
++||||-+...+=+.|+|.+
T Consensus 9 ~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred eEEEEecccCCeEEEEEcCC
Confidence 68999999999999999975
No 94
>PRK00976 hypothetical protein; Provisional
Probab=65.38 E-value=1.3e+02 Score=28.67 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=15.7
Q ss_pred hCCCCcCCcCEEEEEcCCC
Q psy16095 118 QAKVSRDDIDVICYTKGPG 136 (241)
Q Consensus 118 ~agi~~~DID~IAvt~GPG 136 (241)
+.++.++|||.||+|+.=|
T Consensus 45 ~~~~~~~~i~~~~~~ysmg 63 (326)
T PRK00976 45 EKRVPLEDIELIAVTYSMG 63 (326)
T ss_pred hcCCChhheeEEEEeeccc
Confidence 6678899999999987654
No 95
>PLN02287 3-ketoacyl-CoA thiolase
Probab=65.04 E-value=9.8 Score=37.27 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
..+....+++++|+++|++++|||.|.+.+.
T Consensus 71 ~~eLa~eA~~~AL~dAgl~~~dID~vv~G~~ 101 (452)
T PLN02287 71 PDDLLAPVLKAVVEKTGLNPSEVGDIVVGTV 101 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEee
Confidence 3455566999999999999999999987554
No 96
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=64.98 E-value=10 Score=34.01 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
-.+....+++++|+++|++++|||.|.+..
T Consensus 48 ~~~l~~~a~~~aL~~ag~~~~~Id~li~~~ 77 (324)
T cd00827 48 VPTMAVEAARRALERAGIDPDDIGLLIVAT 77 (324)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 345556699999999999999999998854
No 97
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=64.60 E-value=11 Score=35.99 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
+....+++.+|+++|++++|||.|.+.+.
T Consensus 28 eL~~~a~~~aL~~agi~~~~Id~v~~G~~ 56 (387)
T PRK07850 28 ELLGAVQRAVLDRAGIDPGDVEQVIGGCV 56 (387)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence 34456999999999999999999998654
No 98
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=64.56 E-value=9.3 Score=36.31 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMG 138 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~ 138 (241)
.+....+++++|+++|++++|||.|.+...|..+
T Consensus 25 ~eL~~eAa~~Al~dAgl~~~dID~iv~~~~~~~~ 58 (386)
T PRK08313 25 AGLVREAIDRALADAGLTWDDIDAVVVGKAPDFF 58 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEecccccc
Confidence 5556678999999999999999999987656443
No 99
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=64.41 E-value=1e+02 Score=27.42 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=18.3
Q ss_pred eEEEEEeeCCCceeEEEEeCC
Q psy16095 2 VIAIGFEGSANKLGIGIVDTK 22 (241)
Q Consensus 2 ~~~~~~e~s~~~~~~~~~~~~ 22 (241)
|.+||+|=..+.+.++++|.+
T Consensus 1 ~~~lgvdig~~~i~~~l~dl~ 21 (291)
T PRK05082 1 MTTLAIDIGGTKIAAALVGED 21 (291)
T ss_pred CcEEEEEECCCEEEEEEEcCC
Confidence 468999999999999999974
No 100
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=64.30 E-value=12 Score=34.89 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHH
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVART 150 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~ 150 (241)
.-.+.++.+|+++|+++|++++|||.|.+-.+ +.++.-.+.+.
T Consensus 268 ~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~-----~~~~~d~~~~~ 310 (372)
T PRK07515 268 EVCPMVAEHIVEHLAENGLTPADVKRFWLHQA-----NINMNQLIGKK 310 (372)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHH
Confidence 34556788999999999999999999998765 66666555554
No 101
>PRK12404 stage V sporulation protein AD; Provisional
Probab=64.08 E-value=11 Score=35.96 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
..+.+..+++.+|+++|++++|||.+-+..-
T Consensus 54 E~~L~~EA~~~AL~kAGI~~~DID~i~vGdL 84 (334)
T PRK12404 54 ERKLLEEACSRAIEKAKLRKEDIQFFLAGDL 84 (334)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence 3444566999999999999999999998543
No 102
>PLN03173 chalcone synthase; Provisional
Probab=64.03 E-value=15 Score=35.24 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
=.++++..++++|+++|++..|||.+++-.| |.||= +.+...+++|
T Consensus 275 ~~~~~~~~i~~~L~~~gl~~~di~~~v~Hqg-----g~~Il----~~v~~~LgL~ 320 (391)
T PLN03173 275 ISKNVEKSLTEAFKPLGISDWNSLFWIAHPG-----GPAIL----DQVEAKLALK 320 (391)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCeEEECCC-----cHHHH----HHHHHHcCCC
Confidence 3567888999999999999999999999877 55544 4444455554
No 103
>KOG1250|consensus
Probab=63.68 E-value=13 Score=36.42 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHH-HHHHHHhCCCeEEeccchhhhhhcccccC
Q psy16095 111 VLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVA-RTLALLWNKPIVGVNHCIGHIEMGRNVTK 177 (241)
Q Consensus 111 ~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~A-k~LA~~l~iPli~V~HleaHa~sa~~~~~ 177 (241)
+..++|++.. ..+++|.|..|= +||-.|+.++ |.++ +++|+++|.+..+|++..-+..+
T Consensus 204 ig~EIl~ql~---~~~~AI~vpVGG---GGLiaGIat~vk~~~--p~vkIIGVEt~~a~~f~~sl~~g 263 (457)
T KOG1250|consen 204 IGLEILEQLK---EPDGAIVVPVGG---GGLIAGIATGVKRVG--PHVKIIGVETEGAHSFNASLKAG 263 (457)
T ss_pred HHHHHHHhhc---CCCCeEEEecCC---chhHHHHHHHHHHhC--CCCceEEEeecCcHHHHHHHhcC
Confidence 4556666543 236699999984 4777777766 5554 69999999999999987655543
No 104
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=63.10 E-value=12 Score=35.96 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++++|+++|++++|||.|.+.+
T Consensus 28 ~~L~~~A~~~Al~dAgl~~~dID~vi~g~ 56 (426)
T PRK08170 28 SDLAVAAGRALLNRQPFAPDDLDEVILGC 56 (426)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 44455689999999999999999998753
No 105
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=63.02 E-value=14 Score=33.03 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++++|+++|++++|||.|.++.
T Consensus 51 ~~la~~A~~~al~~ag~~~~~Id~li~~~ 79 (320)
T cd00830 51 SDLAVEAAKKALEDAGIDADDIDLIIVAT 79 (320)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 44455689999999999999999998854
No 106
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=62.74 E-value=16 Score=33.02 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCe
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPI 159 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPl 159 (241)
.+.+..+++++|+++|++++|||.+.+..+ + ..+.+.++..+++|.
T Consensus 218 ~~~~~~~~~~~l~~~g~~~~di~~~~~h~~-----~----~~~~~~~~~~lgi~~ 263 (318)
T TIGR00747 218 VRKMGDVVEETLEANGLDPEDIDWFVPHQA-----N----LRIIEALAKRLELDM 263 (318)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCC-----C----HHHHHHHHHHcCCCH
Confidence 455677899999999999999999997554 2 234455666677763
No 107
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=62.58 E-value=12 Score=35.58 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHH-HHHHHHhCCCeEEecc
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVA-RTLALLWNKPIVGVNH 164 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~A-k~LA~~l~iPli~V~H 164 (241)
+....+++++|++++++++|||.|.+..-...+.+.-.+...+ ..+ ...++|.+.|+.
T Consensus 25 el~~~a~~~Al~~agl~p~dID~vi~g~~~~~~~g~~~~~~~~~~~l-g~~~~p~~~V~~ 83 (393)
T cd00826 25 EAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAG-GLQEAPAIGMNN 83 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEEccCCcccCcHHHHHHHHcC-CCCCCcEEEecc
Confidence 3444588999999999999999988865432221211222111 212 124578888874
No 108
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=62.46 E-value=17 Score=34.08 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
+.|..+|+++|+++|+++++|+.||...--.--.|| ..+|..+++|+..++
T Consensus 208 e~i~~ai~~~L~~~~i~~~~i~~iatid~K~~E~gL-------~~~a~~lg~pl~~~~ 258 (315)
T PRK05788 208 EEIAEAVERALEALNIDPRAVKAIASITLKKDEPGL-------LQLAEELGVPFITFS 258 (315)
T ss_pred HHHHHHHHHHHHHcCCCHHHccEEeeeeccCCCHHH-------HHHHHHhCCCeEEeC
Confidence 346678999999999999999999976433223343 457788999999986
No 109
>PRK05790 putative acyltransferase; Provisional
Probab=62.24 E-value=11 Score=35.60 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
-.+....+++++|+++|++++|||.|.+..
T Consensus 26 ~~~La~~A~~~AL~dAgl~~~dID~vi~g~ 55 (393)
T PRK05790 26 AVELGAIVIKAALERAGVPPEQVDEVIMGQ 55 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCeEEEEE
Confidence 345556689999999999999999998753
No 110
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=62.06 E-value=34 Score=29.06 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=17.5
Q ss_pred EEEEeeCCCceeEEEEeCC
Q psy16095 4 AIGFEGSANKLGIGIVDTK 22 (241)
Q Consensus 4 ~~~~e~s~~~~~~~~~~~~ 22 (241)
+||||-+-..||.|||+.+
T Consensus 1 ILGIDPGl~~tG~gvi~~~ 19 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQV 19 (156)
T ss_pred CEeECcccccccEEEEEec
Confidence 5999999999999999975
No 111
>PRK04262 hypothetical protein; Provisional
Probab=61.90 E-value=10 Score=35.15 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHH
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTL 151 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~L 151 (241)
+.++..++++|+++|++++|||.+.+..+ +.++-..+++.|
T Consensus 209 ~~~~~~i~~~L~~~gl~~~dId~~v~Hq~-----n~~~~~~~~~~L 249 (347)
T PRK04262 209 KHIISAAKGLMEKLGLKPSDYDYAVFHQP-----NGKFPLRVAKML 249 (347)
T ss_pred HHHHHHHHHHHHHhCcCHHHhceeecCCC-----chHHHHHHHHHc
Confidence 56788999999999999999999998755 444444444433
No 112
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=61.13 E-value=17 Score=34.18 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHH
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTL 151 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~L 151 (241)
++..++++|+++|++++|||.+..... ..|+--.+++.|
T Consensus 274 ~~~~i~~~L~~~gl~~~DId~~v~Hq~-----n~~~~~~v~~~l 312 (378)
T PRK06816 274 TIKPLLELVDKRNLDPDDIDYFLPHYS-----SEYFREKIVELL 312 (378)
T ss_pred HHHHHHHHHHHcCCChhhCCEEeeCcc-----cHHHHHHHHHHH
Confidence 477899999999999999999998766 666666667665
No 113
>PLN03169 chalcone synthase family protein; Provisional
Probab=60.98 E-value=19 Score=34.33 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcC--EEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDID--VICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID--~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
.-.++++.+++++|+++|++++|+| .+++-.| +.|+= +.++..+++|
T Consensus 278 ~~~~~~~~~i~~~L~~~gl~~~did~~~~v~Hq~-----n~~il----~~v~~~Lgl~ 326 (391)
T PLN03169 278 KIEDNIEGFCKKLMKKAGLVEKDYNDLFWAVHPG-----GPAIL----NRLEKKLKLA 326 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcceEEecCC-----CHHHH----HHHHHHcCCC
Confidence 4567788899999999999999999 5555444 34444 4444455555
No 114
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.59 E-value=37 Score=31.73 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=23.2
Q ss_pred HHHHHHHhhCCCCcCCcCEEEEEcCCC
Q psy16095 110 EVLKEALDQAKVSRDDIDVICYTKGPG 136 (241)
Q Consensus 110 ~~I~~~L~~agi~~~DID~IAvt~GPG 136 (241)
.+++++-+++++.+.|||.||.|++=|
T Consensus 42 ~~L~~l~de~~i~l~eidlialtYsMG 68 (332)
T COG4020 42 SLLRELEDEARIALEEIDLIALTYSMG 68 (332)
T ss_pred HHHHHhhHhhCCccccceEEEEeeccc
Confidence 467778889999999999999988765
No 115
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=60.51 E-value=14 Score=34.36 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++++|+++|++++|||.+.+..
T Consensus 17 ~eL~~~A~~~Al~dagl~~~~Id~vi~g~ 45 (375)
T cd00829 17 LELAAEAARAALDDAGLEPADIDAVVVGN 45 (375)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 44455689999999999999999998844
No 116
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=60.51 E-value=13 Score=35.75 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhC-CCCcCCcCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQA-KVSRDDIDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~a-gi~~~DID~IAvt~ 133 (241)
-.+....+++++|+++ |++++|||.+.+..
T Consensus 27 ~~eL~~~A~~~AL~da~gl~~~dID~vv~g~ 57 (406)
T PRK07851 27 PDDLAAQMVRAALDKVPALDPTDIDDLMLGC 57 (406)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCCEEEEEc
Confidence 3455567999999996 99999999998754
No 117
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=59.56 E-value=11 Score=27.84 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=21.2
Q ss_pred HhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 116 LDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 116 L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
|+++|++++|||.+...+. +.++ .+.++..+++|
T Consensus 1 L~~~g~~~~did~~i~hq~-----~~~~----~~~~~~~lgi~ 34 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQA-----SKKI----LDSIAKRLGIP 34 (90)
T ss_dssp HHHTT--GGGESEEEE-SS-----SHHH----HHHHHHHHTS-
T ss_pred CccccCCHHHCCEEEeCCC-----CHHH----HHHHHHHcCCc
Confidence 6899999999999999875 3333 33455556665
No 118
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=58.95 E-value=18 Score=35.25 Aligned_cols=31 Identities=6% Similarity=0.143 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhCCCCcCC--cCEEEEEcC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDD--IDVICYTKG 134 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~D--ID~IAvt~G 134 (241)
..+....+++++|+++|++++| ||.+.+.+.
T Consensus 48 ~~eL~~~a~~~al~~agl~~~d~~ID~vi~G~~ 80 (438)
T PTZ00455 48 LEELLATAIQGTLENTGLDGKAALVDKVVVGNF 80 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCcCEEEEEec
Confidence 3555667999999999999999 999988654
No 119
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=58.24 E-value=20 Score=32.61 Aligned_cols=30 Identities=37% Similarity=0.462 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
.+....+.+++|+++|++++|||.+.++..
T Consensus 53 ~~la~~Aa~~aL~~ag~~~~dId~li~~~~ 82 (329)
T PRK07204 53 SYMGAEAAKKAVEDAKLTLDDIDCIICASG 82 (329)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 344556899999999999999999988653
No 120
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=57.84 E-value=15 Score=35.13 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
..+....+++++|+++|++++|||.|.++.
T Consensus 27 ~~~L~~ea~~~AL~dagl~~~dID~v~vg~ 56 (398)
T PRK06157 27 AEDLMVEAFLEALADAGIEPKDIDAAWFGT 56 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 456666799999999999999999998865
No 121
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=57.46 E-value=19 Score=34.24 Aligned_cols=63 Identities=19% Similarity=0.320 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHh---CCCeEEeccchhhhhh
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLW---NKPIVGVNHCIGHIEM 171 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l---~iPli~V~HleaHa~s 171 (241)
.+.+..+++++|+++|++++|||.|- +.|.|.-.+=..-. ++|...+ .+|+..+-.+.+|...
T Consensus 269 ~~~~~~a~~~al~~ag~~~~~i~~v~-~hgtgt~~~D~~E~---~al~~~fg~~~~pv~s~K~~~Gh~~~ 334 (399)
T cd00832 269 PPGLARAIRLALADAGLTPEDVDVVF-ADAAGVPELDRAEA---AALAAVFGPRGVPVTAPKTMTGRLYA 334 (399)
T ss_pred HHHHHHHHHHHHHHcCCCHHHccEEE-eccCcCCCCCHHHH---HHHHHHhCCCCCceeCCCchhcchHH
Confidence 44566789999999999999999876 46676544322222 2233333 4677666677777654
No 122
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=57.01 E-value=23 Score=32.97 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHH-HHHHHHHHHH----hCCCeEEeccchhhhhh
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVV-AIVARTLALL----WNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG-~s~Ak~LA~~----l~iPli~V~HleaHa~s 171 (241)
.+.+..+++++|+++|++++|||.|-. .|.|...+=..- .++.+.+... ..+|+..+-.+.+|...
T Consensus 278 ~~~~~~a~~~al~~Agi~~~did~i~~-hgtgt~~~D~~E~~al~~~f~~~~~~~~~~~v~s~k~~~Gh~~~ 348 (421)
T cd00833 278 GEAQAALIRRAYARAGVDPSDIDYVEA-HGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEA 348 (421)
T ss_pred HHHHHHHHHHHHHHhCCCHHHCcEEEe-eCCCCCCCCHHHHHHHHHHHhccCCCCCceeeecCcCccccchh
Confidence 344567899999999999999999975 566654432222 2222333322 13466666677777654
No 123
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=56.94 E-value=16 Score=35.42 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGG 139 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~t 139 (241)
.+....+++++|+++|++++|||.|.+..-+..+.
T Consensus 38 ~eL~~eA~~~Al~dagl~~~dID~vv~~~~~~~~~ 72 (430)
T PRK06365 38 RERVKKAFDYAMNDAGLTLADIDGSVASYFSDHFQ 72 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcCEEEEeccccccc
Confidence 45566799999999999999999987765444443
No 124
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=56.79 E-value=18 Score=34.66 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhC-CCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQA-KVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~a-gi~~~DID~IAvt~ 133 (241)
.+....+++++|+++ |++++|||.|.+.+
T Consensus 32 ~eLa~~A~~~AL~~a~gl~~~dID~vi~g~ 61 (399)
T PRK09052 32 DDLLAHVLRSAVAQVPGLDPKLIEDAIVGC 61 (399)
T ss_pred HHHHHHHHHHHHHhccCcCHHHCCEEEEEe
Confidence 445556999999997 99999999999864
No 125
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=56.78 E-value=18 Score=33.93 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEE-EcCCC
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICY-TKGPG 136 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAv-t~GPG 136 (241)
...+.+++|+++|++++|||.|.+ |.-|+
T Consensus 64 a~~Aa~~aL~~a~~~~~dId~lI~~t~t~d 93 (353)
T PRK12880 64 GKHAANTLLQGLNIDKNSLDALIVVTQSPD 93 (353)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEcCCCC
Confidence 345999999999999999999965 66665
No 126
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=56.75 E-value=22 Score=34.12 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE-----EcCCCCCChhHHHHHHHHHHHHHhCCCeEE
Q psy16095 101 AQHHKSKVLEVLKEALDQAKVSRDDIDVICY-----TKGPGMGGPLTVVAIVARTLALLWNKPIVG 161 (241)
Q Consensus 101 ~r~H~e~L~~~I~~~L~~agi~~~DID~IAv-----t~GPGs~tgLRVG~s~Ak~LA~~l~iPli~ 161 (241)
.+.-.+.+-.+++++++++++++++||+|+. .--|..-..+-+| -+..||..+++|+|.
T Consensus 66 ~~~lg~~~a~av~~~~~~~~l~~~~id~IgsHGQTv~H~P~~~~TlQiG--~~~~iA~~tgi~VV~ 129 (365)
T PRK09585 66 DTALGRLFAEAVNALLAEAGLSPEDIDAIGSHGQTVRHRPGEGFTLQIG--DGALIAELTGITVVA 129 (365)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCccEEEeCCcccccCCCCCCeEEcC--CHHHHHHHHCcCEEe
Confidence 3344555677999999999999999999994 2344322223333 234577778887654
No 127
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=56.61 E-value=32 Score=30.92 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=39.5
Q ss_pred HHHHHHHH-HHHHHHhhCCCCcCCcCEEEEEcCCCCC-ChhHHHHHHHHHHHHHhCCCeEEeccchhhh
Q psy16095 103 HHKSKVLE-VLKEALDQAKVSRDDIDVICYTKGPGMG-GPLTVVAIVARTLALLWNKPIVGVNHCIGHI 169 (241)
Q Consensus 103 ~H~e~L~~-~I~~~L~~agi~~~DID~IAvt~GPGs~-tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa 169 (241)
++...|-. +.+++|+++|++++|||.|.++.-=|.+ +|+-. ..++.|...-++.=+.++.|=.++
T Consensus 98 ~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~--~l~~~LgL~~~v~R~~i~~~GC~g 164 (226)
T PF00195_consen 98 EEAPPLAEEAARKALAEAGLDPSDITHLVTVSCTGIAAPGLDA--RLINRLGLRPDVQRTPIFGMGCAG 164 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSECS-HHH--HHHHHHT--TTSEEEEEES-GGGH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcCCCchhH--HHHhcCCCCCCcEEEEEeccchhh
Confidence 34444433 8888999999999999999987766654 45533 345555555555555566554443
No 128
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=55.87 E-value=13 Score=36.13 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCC----CeEEec
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNK----PIVGVN 163 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~i----Pli~V~ 163 (241)
.+....+++.+|++++++++|||.|.+.+--+... +...++.++...+. |.+.|+
T Consensus 32 ~~L~~~a~~~al~~agl~~~~Id~vi~G~~~~~~~----~~~~ar~~~l~aGl~~~~p~~~V~ 90 (430)
T TIGR02446 32 VDLGKMVVSELLARSEIDPKLIEQLVFGQVVQMPE----APNIAREIVLGTGMNVHTDAYSVT 90 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCcCc----cchHHHHHHHhCCCCCCCchhhhh
Confidence 34445699999999999999999999865432222 23466666554454 455554
No 129
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=55.59 E-value=17 Score=34.64 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhh-CCCCcCCcCEEEEEcCCCCCC-hhHHHHHHHHHHHHHhC----CCeEEecc
Q psy16095 107 KVLEVLKEALDQ-AKVSRDDIDVICYTKGPGMGG-PLTVVAIVARTLALLWN----KPIVGVNH 164 (241)
Q Consensus 107 ~L~~~I~~~L~~-agi~~~DID~IAvt~GPGs~t-gLRVG~s~Ak~LA~~l~----iPli~V~H 164 (241)
....+++.+|++ +|++++|||.|.+.+.+.... +.-+ ++.++...+ +|.+.|+.
T Consensus 30 L~~~~~~~al~~~agl~~~~Id~vi~g~~~~~~~~g~~~----ar~~~~~~Gl~~~~p~~~V~~ 89 (387)
T PRK08947 30 LSAHLMRSLLARNPALDPAEIDDIIWGCVQQTLEQGFNI----ARNAALLAGIPHSVPAVTVNR 89 (387)
T ss_pred HHHHHHHHHHHhccCcChHHhCeEEEEeccccccccccH----HHHHHHHcCCCCCCcceeeec
Confidence 334589999996 799999999999987653332 2222 333333333 55577764
No 130
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=55.27 E-value=24 Score=30.18 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCC
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMG 138 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~ 138 (241)
+.+...++++|+++|++++|||.|... +++..
T Consensus 145 ~~~~~~i~~~l~~ag~~~~did~~~~h-~~~~~ 176 (254)
T cd00327 145 EGLARAARKALEGAGLTPSDIDYVEAH-GTGTP 176 (254)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEcc-CCcCc
Confidence 445678999999999999999998763 44443
No 131
>PRK04262 hypothetical protein; Provisional
Probab=54.69 E-value=15 Score=33.96 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
-.+....+++++|+++|++++|||.|.+.
T Consensus 51 ~~~la~~Aa~~aL~~ag~~~~dId~li~~ 79 (347)
T PRK04262 51 TATIAVEAARNALKRAGIDPKEIGAVYVG 79 (347)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 34555679999999999999999998763
No 132
>PRK06059 lipid-transfer protein; Provisional
Probab=54.59 E-value=22 Score=33.75 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
.+....+++++|+++|++++|||.|.+.
T Consensus 24 ~~La~~A~~~Al~dAgl~~~dId~vi~~ 51 (399)
T PRK06059 24 VEYGVVAARAALADAGLDWRDVQLVVGA 51 (399)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 4445568999999999999999999864
No 133
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=54.27 E-value=28 Score=31.42 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
.+....+++++|+++|++++|||.|.++..
T Consensus 54 ~~la~~A~~~al~~ag~~~~~Id~li~~~~ 83 (325)
T PRK12879 54 SDLAIKAAERALARAGLDAEDIDLIIVATT 83 (325)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence 344556999999999999999999987543
No 134
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=54.06 E-value=1.2e+02 Score=24.66 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCC------------CChhHHHHHHHHHHHHHhCCCeEEeccchhhhhh
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGM------------GGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs------------~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~s 171 (241)
-.+.+...+++++++.+.. .|+++. ||. ..++. .+.+++.|...+++|++-.|...+.+++
T Consensus 35 ~~~~l~~~i~~~~~~~~~~-----gIgi~~-pG~v~~~~g~i~~~~~~~~~-~~~l~~~l~~~~~~pv~i~Nd~~~~a~a 107 (179)
T PF00480_consen 35 LLDALAELIERLLADYGRS-----GIGISV-PGIVDSEKGRIISSPNPGWE-NIPLKEELEERFGVPVIIENDANAAALA 107 (179)
T ss_dssp HHHHHHHHHHHHHHHHTCE-----EEEEEE-SSEEETTTTEEEECSSGTGT-TCEHHHHHHHHHTSEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc-----cEEEec-cccCcCCCCeEEecCCCCcc-cCCHHHHhhcccceEEEEecCCCcceee
Confidence 3455666788887776543 676642 331 22222 2456778888999999999988777665
Q ss_pred ccc
Q psy16095 172 GRN 174 (241)
Q Consensus 172 a~~ 174 (241)
-++
T Consensus 108 e~~ 110 (179)
T PF00480_consen 108 EYW 110 (179)
T ss_dssp HHH
T ss_pred hhh
Confidence 433
No 135
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=53.76 E-value=17 Score=33.85 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+.+++|+++|++++|||.|.+..
T Consensus 51 ~~la~~Aa~~aL~~agl~~~dID~li~~s 79 (345)
T TIGR00748 51 ATIGVEAARNALKRAKIDPKDIGAVYVGS 79 (345)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 44555689999999999999999998743
No 136
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=53.72 E-value=26 Score=33.79 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHH-HHHHh---CCCeEEeccchhhhh
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVART-LALLW---NKPIVGVNHCIGHIE 170 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~-LA~~l---~iPli~V~HleaHa~ 170 (241)
+.+..+++++|+++|++++|||.|- ..|+|...+-.+=....+. +.... .+|+..+--+.+|..
T Consensus 299 ~~~~~a~~~Al~~Agi~~~dId~ve-~hgtgt~~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~GH~~ 366 (437)
T PLN02836 299 RGAVLAMTRALQQSGLHPNQVDYVN-AHATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTKGATGHLL 366 (437)
T ss_pred HHHHHHHHHHHHHcCCCHhHcCEEE-ccCCcCcCcCHHHHHHHHHHhcccccCCCCeeECCcccccccH
Confidence 3455689999999999999999985 4677665443333222222 22111 345555555556643
No 137
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=53.56 E-value=29 Score=32.87 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHh--CCCeEEeccchhhhhh
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLW--NKPIVGVNHCIGHIEM 171 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l--~iPli~V~HleaHa~s 171 (241)
+..+++++|+++|++++|||.|- ..|.|...+=..-. ++|...+ +.|+-.+-...+|...
T Consensus 262 ~~~a~~~Al~~Agl~~~dId~v~-~hgtgt~~~D~~E~---~al~~~f~~~~pv~s~K~~~Gh~~~ 323 (392)
T PRK09185 262 AILAMQQALADAGLAPADIGYIN-LHGTATPLNDAMES---RAVAAVFGDGVPCSSTKGLTGHTLG 323 (392)
T ss_pred HHHHHHHHHHHcCCCHHHccEEE-eCCCCCcCCCHHHH---HHHHHHhCCCCceeCCCcccccChh
Confidence 34689999999999999999974 57777654433222 2333333 4566666666677664
No 138
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=53.51 E-value=28 Score=31.34 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++++|+++|++++|||.|.+..
T Consensus 52 ~~la~~A~~~al~~agl~~~~Id~~i~~~ 80 (318)
T TIGR00747 52 STMGFEAAKRAIENAGISKDDIDLIIVAT 80 (318)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEC
Confidence 44456699999999999999999998854
No 139
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=53.44 E-value=22 Score=34.17 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhh-CCCCcCCcCEEEEEcCCCCCC-hhHHHHHHHHHHHHHhCCCeEEeccc
Q psy16095 106 SKVLEVLKEALDQ-AKVSRDDIDVICYTKGPGMGG-PLTVVAIVARTLALLWNKPIVGVNHC 165 (241)
Q Consensus 106 e~L~~~I~~~L~~-agi~~~DID~IAvt~GPGs~t-gLRVG~s~Ak~LA~~l~iPli~V~Hl 165 (241)
+....+++.+|++ +|++++|||.|.+.+--.... +.-++...+..+....++|.+.|+..
T Consensus 28 ~L~~~a~~~al~~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~~~vP~~tV~~a 89 (401)
T PRK09050 28 DLGAVPLKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLPVSVPGTTINRL 89 (401)
T ss_pred HHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccchHHHHHHHHcCCCCCCceEEEecc
Confidence 4445689999995 799999999999965422221 22233333333333335788888643
No 140
>PRK06840 hypothetical protein; Validated
Probab=53.14 E-value=19 Score=32.93 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
.+....+++++|+++|++++|||.|.+
T Consensus 54 ~~la~~Aa~~aL~~ag~~~~dId~li~ 80 (339)
T PRK06840 54 SDMAIAAAKPALKQAGVDPAAIDVVIY 80 (339)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 444556999999999999999999975
No 141
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=52.85 E-value=34 Score=32.90 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEeccchhhhhh
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~HleaHa~s 171 (241)
..+...|+.+|+++|+ ++|||+|- ..|.|.-.+=+. =+++|...++.|+-.+-.+.+|.+.
T Consensus 280 ~~~~~am~~AL~~Agl-~~~IdyI~-ahgtgT~~~D~~---E~~Ai~~~f~~pvsS~Ks~~GH~l~ 340 (398)
T PRK06519 280 GDLEASLERLLKPAGG-LAAPTAVI-SGATGAHPATAE---EKAALEAALAGPVRGIGTLFGHTME 340 (398)
T ss_pred HHHHHHHHHHHHHCCC-cccCCEEE-eCCCCCCCccHH---HHHHHHHHcCCCccccchhhccchH
Confidence 3456799999999999 79999986 455554322111 1344555667888888888888765
No 142
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=52.58 E-value=22 Score=33.07 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
.+....+++++|+++|++++|||.+++...
T Consensus 207 ~~~~~~~~~~~L~~~gl~~~did~~i~Hq~ 236 (345)
T TIGR00748 207 FHHVVTAAKGLMEKLGLTPEDFDYAVFHQP 236 (345)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcCEEEeCCC
Confidence 344557899999999999999999998654
No 143
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=52.37 E-value=90 Score=30.16 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=15.4
Q ss_pred EEEEEeeCCCceeEEEEeCC
Q psy16095 3 IAIGFEGSANKLGIGIVDTK 22 (241)
Q Consensus 3 ~~~~~e~s~~~~~~~~~~~~ 22 (241)
.+||||--...+=++++|.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 47899977777778888863
No 144
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=52.21 E-value=22 Score=33.40 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHH-HHHHHHHHhCCCeEEeccchhhhh
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAI-VARTLALLWNKPIVGVNHCIGHIE 170 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s-~Ak~LA~~l~iPli~V~HleaHa~ 170 (241)
+....+++++|+++|++++|||.|- ..|+|.-.+=++-.. +.+.+.....+|+-.+-.+.+|.+
T Consensus 206 ~~~~~ai~~AL~~Agl~p~dIdyIe-aHgtgT~~~D~~E~~Ai~~~fg~~~~~~v~s~K~~~GH~~ 270 (342)
T PRK14691 206 DGAYRAMKIALRQAGITPEQVQHLN-AHATSTPVGDLGEINAIKHLFGESNALAITSTKSATGHLL 270 (342)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEE-ecCCCCcCCCHHHHHHHHHHhCCCCCceEECCcccccCCc
Confidence 3445689999999999999999875 467776544333222 222222112357766667777854
No 145
>PLN03170 chalcone synthase; Provisional
Probab=52.02 E-value=38 Score=32.55 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=19.8
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAv 131 (241)
..+.+++|+++|++++|||.|.+
T Consensus 111 ~~Aa~~AL~~ag~~~~dId~lI~ 133 (401)
T PLN03170 111 KAAAQKAIKEWGQPKSKITHLVF 133 (401)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEE
Confidence 34889999999999999998754
No 146
>PLN03168 chalcone synthase; Provisional
Probab=51.66 E-value=31 Score=32.93 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.1
Q ss_pred HHHHH-HHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 104 HKSKV-LEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 104 H~e~L-~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
|...| ..+.+++|+++|++++|||.|.+...
T Consensus 100 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~ 131 (389)
T PLN03168 100 QVPKLAAEAAQKAIKEWGGRKSDITHIVFATT 131 (389)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 33444 34899999999999999999977543
No 147
>PLN03170 chalcone synthase; Provisional
Probab=51.47 E-value=34 Score=32.83 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
.-.++++..++++|+++|++..|||.+++-.| +.||= +.+...+++|
T Consensus 278 ~~~~~i~~~v~~~L~~~gl~~~di~~~v~Hqg-----g~~il----~~v~~~Lgl~ 324 (401)
T PLN03170 278 LISKNIERSLEEAFKPLGITDYNSIFWVAHPG-----GPAIL----DQVEAKVGLE 324 (401)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCeEEecCC-----cHHHH----HHHHHHcCCC
Confidence 45567888999999999999999999988766 44444 4444444554
No 148
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=51.37 E-value=21 Score=34.00 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++++|+++|++++|||.|.+..
T Consensus 27 ~eLa~eA~~~AL~dAgl~~~dID~vi~g~ 55 (403)
T PRK06289 27 ADLTREVVDGTLAAAGVDADDIEVVHVGN 55 (403)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 44456799999999999999999998854
No 149
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=51.33 E-value=32 Score=31.86 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhC--CCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCC
Q psy16095 103 HHKSKVLEVLKEALDQA--KVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~a--gi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iP 158 (241)
...+.++.+++++|+++ |++.+|||.+++-.+ +.++ .+.++..+++|
T Consensus 256 ~~~~~~~~~i~~~L~~~~~g~~~~did~~~~H~~-----~~~i----~~~v~~~lgl~ 304 (361)
T cd00831 256 LVEKNLERVLRKLLARLGIGLFKLAFDHWCVHPG-----GRAV----LDAVEKALGLS 304 (361)
T ss_pred HHHHHHHHHHHHHhccccCCCccccceEEEECCC-----ChHH----HHHHHHHcCCC
Confidence 44566888999999999 999999999998766 3333 34455556665
No 150
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=51.30 E-value=23 Score=33.34 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCCCCChhHHHHHHHHHHHHHhC---CCeEEec
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTK-GPGMGGPLTVVAIVARTLALLWN---KPIVGVN 163 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~-GPGs~tgLRVG~s~Ak~LA~~l~---iPli~V~ 163 (241)
-.+....+++++|+++|++++|||.|.+.. .|+.+.+. -..+..++..++ +|.+.|+
T Consensus 22 ~~eLa~~a~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~---~~~a~~va~~lGl~~~~~~~v~ 82 (389)
T PRK06064 22 LRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLFVSQ---EHIAALIADYAGLAPIPATRVE 82 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccc---ccHHHHHHHHcCCCCCCeeEEe
Confidence 345566789999999999999999998844 34433211 123344555555 4555554
No 151
>PRK06158 thiolase; Provisional
Probab=51.13 E-value=32 Score=32.59 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
-.+....+++++|+++|++++|||.|.+..
T Consensus 28 ~~eL~~eA~~~Al~dAgl~~~dID~iv~~~ 57 (384)
T PRK06158 28 AMELLAQAAHRALADAGLTMADVDGLFTAS 57 (384)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 345666799999999999999999998865
No 152
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=50.91 E-value=32 Score=32.11 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCCC
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMG 138 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs~ 138 (241)
+..+++++|+++|++++|||.|- ..|.|..
T Consensus 277 ~~~ai~~Al~~Agi~~~dId~ve-~h~tgt~ 306 (407)
T TIGR03150 277 AARAMRAALKDAGINPEDVDYIN-AHGTSTP 306 (407)
T ss_pred HHHHHHHHHHHcCCCHhHCCEEe-CcCCCCC
Confidence 44689999999999999999985 4566653
No 153
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=50.47 E-value=28 Score=32.76 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++++|+++|++++|||.|.+..
T Consensus 97 ~~La~~Aa~~aL~~agi~~~dId~li~~s 125 (379)
T PLN02326 97 TSLAVEAAKKALEMAGVDPEDVDLVLLCT 125 (379)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 44455699999999999999999998753
No 154
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=50.45 E-value=54 Score=32.00 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCC----------------CCC-hhHHHHH-HHHHHHH--HhCCCeEEecc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPG----------------MGG-PLTVVAI-VARTLAL--LWNKPIVGVNH 164 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPG----------------s~t-gLRVG~s-~Ak~LA~--~l~iPli~V~H 164 (241)
.+.|..+++++++++|+++++|..++++--|- -|. ..+-+.. .++.|.. .-+.+++..+.
T Consensus 63 ~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~~~Pf~p~~~~~~~~~a~~lgl~~~~~~~v~~~P~ 142 (412)
T PF14574_consen 63 RETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLGRAPFVPVFRGGVEIPAAELGLEINPDARVYILPN 142 (412)
T ss_dssp HHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGSSTTT--S-S----EEHHHHT-SS-TTSEEEE---
T ss_pred HHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhccCCcccccCCCcEEeHHHhCcccCCCCEEEEcCc
Confidence 35577788889999999999999999875441 021 1111111 1222222 12345555555
Q ss_pred chhhhh----hcccccCC--CCcEEEEEe-CCceEEEEEeCCc
Q psy16095 165 CIGHIE----MGRNVTKC--ENPTVLYVS-GGNTQVIAYSRQR 200 (241)
Q Consensus 165 leaHa~----sa~~~~~~--~~Pl~L~VS-GGhT~l~~~~~~~ 200 (241)
+-+..- +..+..+. .....|++| |=|+++..+..++
T Consensus 143 i~~fVG~DivAgl~a~~~~~~~~~~LliDiGTNgEivL~~~~~ 185 (412)
T PF14574_consen 143 ISGFVGADIVAGLLATGMDESDEPSLLIDIGTNGEIVLGNGGK 185 (412)
T ss_dssp -BTTB-HHHHHHHHHHTCCC-SS-EEEEEESSCEEEEEE-SS-
T ss_pred ccccccHHHHHHHHhcCcccCCCcEEEEEecCCeEEEEecCCE
Confidence 444432 22222232 123678898 6578888875554
No 155
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=50.36 E-value=27 Score=33.34 Aligned_cols=29 Identities=24% Similarity=0.118 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++++|+++|+..+|||.|.+.+
T Consensus 28 ~eLa~~A~~~AL~~ag~~~~dID~vi~g~ 56 (391)
T PRK07661 28 DDLGALVVKETLKRAGNYEGPIDDLIIGC 56 (391)
T ss_pred HHHHHHHHHHHHHhcCCChhHCCEEEEEe
Confidence 44455689999999988779999999863
No 156
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=50.24 E-value=29 Score=33.31 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhC---CCeEEeccchhhhhh
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWN---KPIVGVNHCIGHIEM 171 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~---iPli~V~HleaHa~s 171 (241)
...+++++|+++|++++|||.|- ..|.|.-.+=++- +++|...++ .|+..+-...+|...
T Consensus 288 ~~~a~~~Al~~agi~~~did~ie-~hgtgt~~~D~~E---~~Al~~~fg~~~~~v~s~K~~~GH~~~ 350 (418)
T PRK07910 288 AGHAMTRAIELAGLTPGDIDHVN-AHATGTSVGDVAE---GKAINNALGGHRPAVYAPKSALGHSVG 350 (418)
T ss_pred HHHHHHHHHHHhCCCHHHCCEEE-cCCcCCCCCCHHH---HHHHHHHhCCCCCceeCccccccccHH
Confidence 45689999999999999999995 4566643332221 122333332 456555566666553
No 157
>PLN03172 chalcone synthase family protein; Provisional
Probab=50.05 E-value=43 Score=32.14 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAv 131 (241)
..+.+++|+++|++++|||.|.+
T Consensus 107 ~~Aa~~aL~~ag~~~~dId~ii~ 129 (393)
T PLN03172 107 KEAAAKAIKEWGQPKSKITHLVF 129 (393)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEE
Confidence 34899999999999999998754
No 158
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=50.04 E-value=17 Score=32.53 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
.+.+..+++++|+++|++++|||.+...
T Consensus 204 ~~~~~~~i~~al~~agl~~~did~~~~h 231 (332)
T cd00825 204 AEGLARAAKEALAVAGLTVWDIDYLVAH 231 (332)
T ss_pred HHHHHHHHHHHHHHcCCCHhHCCEEEcc
Confidence 3556779999999999999999998864
No 159
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=49.87 E-value=38 Score=30.45 Aligned_cols=30 Identities=30% Similarity=0.415 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
..+....+++++|+++|++++|||.+.+..
T Consensus 52 ~~~la~~A~~~al~~agl~~~~id~vi~~~ 81 (319)
T PRK09352 52 TSDLATEAAKKALEAAGIDPEDIDLIIVAT 81 (319)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 455556699999999999999999988744
No 160
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=49.67 E-value=8.5 Score=36.65 Aligned_cols=38 Identities=58% Similarity=1.031 Sum_probs=31.0
Q ss_pred eccccccccCCCCCCCCCchhhccccc---hhhhhhhhhhh
Q psy16095 27 LSNCRRTYVTPPGEGFLPRETAQHHKS---KVLEEKFDYLS 64 (241)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 64 (241)
++|++++|..+-|+|..|++.+.+|.+ .+++|.|+.+.
T Consensus 25 l~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~ 65 (345)
T PTZ00340 25 LSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAK 65 (345)
T ss_pred EEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 345677888889999999999999988 67888888643
No 161
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=49.52 E-value=32 Score=32.33 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCC
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGM 137 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs 137 (241)
...+++++|+++|++++|||.|- ..|.|.
T Consensus 278 ~~~a~~~Al~~agi~~~dId~v~-~hgtgt 306 (411)
T PRK07314 278 AARAMKLALKDAGINPEDIDYIN-AHGTST 306 (411)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEE-ccccCC
Confidence 34689999999999999999985 456665
No 162
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=49.37 E-value=23 Score=33.85 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCC--CCCCh-hHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGP--GMGGP-LTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GP--Gs~tg-LRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
.+....+++.+|++++++++|||.|.+.+-- +...+ +--+...+.+| ..++|.+.|+.
T Consensus 27 ~~L~~~a~~~al~~a~l~~~~Id~vi~G~~~~~~~~~~~~ar~~~l~~gl--~~~vP~~tV~~ 87 (390)
T PRK06504 27 ADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQATNVARNAVLASKL--PESVPGTSIDR 87 (390)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEEec
Confidence 3444569999999999999999999996542 22211 11111122222 12678888874
No 163
>PLN03172 chalcone synthase family protein; Provisional
Probab=48.92 E-value=35 Score=32.76 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHH
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTL 151 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~L 151 (241)
.=.+++++.++++|++.|++..|||.+++-.| |.||=-.+++.|
T Consensus 274 ~~~~~i~~~~~~~L~~~gl~~~di~~~~~Hqg-----g~~Il~~v~~~L 317 (393)
T PLN03172 274 LISKNIEKSLVEAFAPIGINDWNSIFWIAHPG-----GPAILDQVEIKL 317 (393)
T ss_pred HHHHHHHHHHHHHhhhcCCCccccceEEecCC-----cHHHHHHHHHHc
Confidence 34467888999999999999999999998777 555544444433
No 164
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=48.88 E-value=26 Score=33.94 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++.+|+++|++++|||.+.+.+
T Consensus 32 ~eL~~~a~~~al~~agl~~~~Id~vv~G~ 60 (427)
T PRK09268 32 QDMLTAALDGLVDRFGLQGERLGEVVAGA 60 (427)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 34555689999999999999999999864
No 165
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.80 E-value=41 Score=32.13 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCC
Q psy16095 98 RETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMG 138 (241)
Q Consensus 98 e~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~ 138 (241)
+.--++-......+.++||+.+++.++|||.|.+..--|++
T Consensus 70 ~ifie~a~~l~v~a~r~aL~~~~l~pedId~vv~vtsTG~~ 110 (356)
T COG3424 70 EIFIEEAVPLGVDALRRALDGSPLRPEDIDAVVTVTSTGLA 110 (356)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCHHHCcEEEEEeecccc
Confidence 33333344445668999999999999999999987776654
No 166
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=48.45 E-value=26 Score=33.63 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhh-CCCCcCCcCEEEEEcCCC-CCChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 106 SKVLEVLKEALDQ-AKVSRDDIDVICYTKGPG-MGGPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 106 e~L~~~I~~~L~~-agi~~~DID~IAvt~GPG-s~tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
+....+++.+|++ ++++++|||.|.+.+.-. ...+.-++..++..+....++|.+.|+.
T Consensus 27 ~L~~~a~~~al~~~a~i~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~~~~p~~~V~~ 87 (400)
T TIGR02430 27 DLAAVPIKALLARNPQLDWAAIDDVIYGCANQAGEDNRNVARMAALLAGLPVSVPGTTVNR 87 (400)
T ss_pred HHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEeec
Confidence 3445689999995 799999999999965421 1112112222333333333467777764
No 167
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=48.21 E-value=36 Score=31.80 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCC-hhHHHHHHHHHHHHH-hCCCeEEeccchhhhhh
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGG-PLTVVAIVARTLALL-WNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~t-gLRVG~s~Ak~LA~~-l~iPli~V~HleaHa~s 171 (241)
.+.+..+++.+|+++|++++|||.|- +-+.|... -..-+.++.+.+... -..|+..+-.+.+|..+
T Consensus 233 g~gl~~ai~~AL~~agl~~~dId~v~-ah~~gt~~~d~~e~~A~~~~f~~~~~~~~~~~~k~~~Gh~~a 300 (348)
T PRK06147 233 GDGLTQAIRAALAEAGCGLEDMDYRI-ADLNGEQYRFKEAALAEMRLFRVRKEFFDLWHPAECIGEIGA 300 (348)
T ss_pred hHHHHHHHHHHHHHcCCCHHHCCEEE-cCCCCCccchHHHHHHHHHHhhhccCCCceecchHhhcchHH
Confidence 35677899999999999999999986 45556433 333344455544432 23465555556677654
No 168
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=47.63 E-value=30 Score=33.31 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
...+++++|+++|++++|||.|.+.+-
T Consensus 32 a~~A~~~al~~agi~p~~ID~vi~G~~ 58 (402)
T PRK08242 32 AAGLLEALRDRNGLDTAAVDDVVLGCV 58 (402)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEEEec
Confidence 344899999999999999999998544
No 169
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=47.53 E-value=39 Score=31.52 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
+....+++++|+++|++++|||.|.+...
T Consensus 97 ~la~~Aa~~aL~~agl~~~~Id~li~~~~ 125 (372)
T PRK07515 97 EMGVAAARQALARAGRTAEDIDAVIVACS 125 (372)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 44556999999999999999999988643
No 170
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=47.22 E-value=18 Score=34.13 Aligned_cols=30 Identities=40% Similarity=0.592 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEE-EcCC
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICY-TKGP 135 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAv-t~GP 135 (241)
..-..+.+++|+.+|++++|||.|.| |.-|
T Consensus 54 ~la~~Aa~~AL~~Agi~~~dIDlII~aT~tp 84 (323)
T COG0332 54 DLAVEAARKALEDAGISPDDIDLIIVATSTP 84 (323)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCc
Confidence 33456899999999999999999998 4444
No 171
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=46.91 E-value=37 Score=32.62 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHh-----CCCeEEeccchhhhhh
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLW-----NKPIVGVNHCIGHIEM 171 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l-----~iPli~V~HleaHa~s 171 (241)
+.+..+++++|+++|++++|||.|-. .|.|...+-+.-. ++|+..+ .+|+-.+-.+.+|...
T Consensus 289 ~~~~~ai~~AL~~agi~p~dId~i~~-Hgtgt~~~d~~E~---~al~~~~~~~~~~~pv~s~k~~~Gh~~~ 355 (425)
T PRK06501 289 SPAIGAIRAALADAGLTPEQIDYINA-HGTSTPENDKMEY---LGLSAVFGERLASIPVSSNKSMIGHTLT 355 (425)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEEe-cCccCcchHHHHH---HHHHHHhcccCCCcEEECCCcccCCCch
Confidence 34678999999999999999999875 4555433322221 2333333 2455555566677653
No 172
>PLN03173 chalcone synthase; Provisional
Probab=46.81 E-value=54 Score=31.44 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=19.6
Q ss_pred HHHHHHHhhCCCCcCCcCEEEE
Q psy16095 110 EVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 110 ~~I~~~L~~agi~~~DID~IAv 131 (241)
.+.+++|+++|++++|||.|.+
T Consensus 108 ~Aa~~AL~~ag~~~~dId~li~ 129 (391)
T PLN03173 108 EAAAKAIKEWGQPKSKITHLVF 129 (391)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE
Confidence 4899999999999999998754
No 173
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA. This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.
Probab=45.97 E-value=27 Score=33.24 Aligned_cols=57 Identities=21% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhh-CCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhC----CCeEEeccc
Q psy16095 106 SKVLEVLKEALDQ-AKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWN----KPIVGVNHC 165 (241)
Q Consensus 106 e~L~~~I~~~L~~-agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~----iPli~V~Hl 165 (241)
+....+++.+|++ +|++++|||.|.+.+-...... |...++.++...+ +|.+.||..
T Consensus 27 ~L~~~a~~~al~~~agl~~~~Id~v~~G~~~~~~~~---g~~~ar~~~~~~g~~~~~p~~tV~~~ 88 (385)
T TIGR02445 27 DLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTLEQ---GFNIARNAALLAQIPHTSAAVTVNRL 88 (385)
T ss_pred HHHHHHHHHHHHhccCCCHHHcCEEEEecccccccc---cchHHHHHHHHCCCCCCcchhhhhhh
Confidence 4455699999996 5999999999999765422221 2235555565566 555666643
No 174
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=45.50 E-value=41 Score=26.14 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=33.4
Q ss_pred cCCCCCeEEeeeeeeccc--------CCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEE
Q psy16095 72 SIGKKNTILSNCRRTYVT--------PPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVIC 130 (241)
Q Consensus 72 ~~~~~~~il~~~~~s~~~--------~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IA 130 (241)
.++++++||...+..... .++|.+-|.+.. ...+++++.++.|++..++..+.
T Consensus 7 i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~------~~aa~REl~EEtGl~~~~l~~~~ 67 (126)
T cd04697 7 VFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESY------LQNAQRELEEELGIDGVQLTPLG 67 (126)
T ss_pred EEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCH------HHHHHHHHHHHHCCCccccEEee
Confidence 356778898866553311 134456554332 23589999999999877665554
No 175
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=45.12 E-value=33 Score=32.49 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHH-HHHHHHHHHhCCCeEEeccchhhhh
Q psy16095 107 KVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVA-IVARTLALLWNKPIVGVNHCIGHIE 170 (241)
Q Consensus 107 ~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~-s~Ak~LA~~l~iPli~V~HleaHa~ 170 (241)
.+..+++++|+++|++++|||.|-.- |.|...+=.+-+ ++.+.+.....+|+-++--..+|..
T Consensus 289 ~~~~a~~~Al~~Agi~p~dId~i~~h-gtgt~~~D~~E~~al~~~fg~~~~~~v~s~K~~~GH~~ 352 (424)
T PRK06333 289 GARRAMLIALRQAGIPPEEVQHLNAH-ATSTPVGDLGEVAAIKKVFGHVSGLAVSSTKSATGHLL 352 (424)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEecc-CCCCccchHHHHHHHHHHhCCCCCceeECcccchhhhH
Confidence 34578999999999999999998753 666543322211 2222222112345555556667744
No 176
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=44.93 E-value=51 Score=25.29 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=37.5
Q ss_pred CCCCCeEEeeeeee-----cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 73 IGKKNTILSNCRRT-----YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 73 ~~~~~~il~~~~~s-----~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
++.+++||.-.+.. +..-++|++-|.+... -.+++++.++.|++....+.+.+..
T Consensus 10 ~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~------eaa~RE~~EEtGl~~~~~~~~~~~~ 69 (125)
T cd04679 10 LRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVE------DAVVREIEEETGLSIHSTRLLCVVD 69 (125)
T ss_pred ECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHH------HHHHHHHHHHHCCCcccceEEEEEe
Confidence 45567777766542 2345677777755322 2588999999999988888877654
No 177
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=44.74 E-value=34 Score=32.26 Aligned_cols=29 Identities=34% Similarity=0.499 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.+....+++++|+++|++++|||.|.+..
T Consensus 22 ~eLa~~A~~~AL~dAgi~~~dID~vi~g~ 50 (385)
T PRK12578 22 QELAWESIKEALNDAGVSQTDIELVVVGS 50 (385)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 34455689999999999999999998854
No 178
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=44.48 E-value=13 Score=30.15 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=22.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 94 GFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 94 GvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
|+.|+.....= ..+++++|+++|++++|||.+=+..
T Consensus 14 ~~~P~~~~~~p----~~A~~~al~~ag~~~~did~~Ei~E 49 (123)
T PF02803_consen 14 GVDPEDMGLGP----VPAARKALERAGLTPDDIDVIEINE 49 (123)
T ss_dssp E--GGGGGGTH----HHHHHHHHHHHT--GGGESEEEE--
T ss_pred ecCHHHhCchH----HHHHHHHHHHhCCCccccchhhccc
Confidence 55565543331 2588999999999999999998864
No 179
>PLN03169 chalcone synthase family protein; Provisional
Probab=44.44 E-value=54 Score=31.25 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEEEcCCC
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICYTKGPG 136 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAvt~GPG 136 (241)
..+.+++|+++|++++|||.|.+...++
T Consensus 111 ~~Aa~~aL~~ag~~~~dId~lI~~t~t~ 138 (391)
T PLN03169 111 VEASLACIKEWGRPVSDITHLVYVSSSE 138 (391)
T ss_pred HHHHHHHHHHhCCCHHHCCEEEEECcCC
Confidence 3489999999999999999976655544
No 180
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=44.14 E-value=48 Score=31.13 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHH-HHHHHHHHH----hCCCeEEeccchhhhhh
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVA-IVARTLALL----WNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~-s~Ak~LA~~----l~iPli~V~HleaHa~s 171 (241)
..+..+++++|+++|++++|||.|-. .|.|.-.+-+.-. +..+.+... ..+|+.++....+|...
T Consensus 279 ~~~~~a~~~al~~Agl~~~dId~i~~-h~tgt~~~d~~E~~al~~~~~~~~~~~~~~~v~s~k~~~Gh~~~ 348 (424)
T smart00825 279 PAQARLIRQALARAGVDPADVDYVEA-HGTGTPLGDPIEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEA 348 (424)
T ss_pred HHHHHHHHHHHHHhCCCHHHccEEEe-eCCCCCCCCHHHHHHHHHHHhccCCCCCceEEeccccccCCccc
Confidence 34556899999999999999999976 4555443322221 122222211 12456555566677654
No 181
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=44.06 E-value=1.3e+02 Score=24.43 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=34.0
Q ss_pred HHHHHHHhhCCCCcCCcCEEEEEcCC---CCCC-hhHHHHHHHHHHHHHh-CCCeEEec
Q psy16095 110 EVLKEALDQAKVSRDDIDVICYTKGP---GMGG-PLTVVAIVARTLALLW-NKPIVGVN 163 (241)
Q Consensus 110 ~~I~~~L~~agi~~~DID~IAvt~GP---Gs~t-gLRVG~s~Ak~LA~~l-~iPli~V~ 163 (241)
..+.+++++ ..++.|.|..-- |..+ --+.-..|++.|+..+ ++|++-++
T Consensus 41 ~~l~~li~~-----~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~D 94 (135)
T PF03652_consen 41 EELKKLIEE-----YQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVD 94 (135)
T ss_dssp HHHHHHHHH-----CCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEE
T ss_pred HHHHHHHHH-----hCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 345556665 358888885422 4432 3455688999999998 99999997
No 182
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=44.02 E-value=51 Score=29.45 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhCCCC----cCCcCEEEEEcC
Q psy16095 104 HKSKVLEVLKEALDQAKVS----RDDIDVICYTKG 134 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~----~~DID~IAvt~G 134 (241)
..+....+.+++|+++|++ ++|+|.|.+...
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~~~~ 45 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTG 45 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCEEEEEEeC
Confidence 3445567999999999999 899999988444
No 183
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=43.77 E-value=44 Score=31.48 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEE-cCCC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYT-KGPG 136 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt-~GPG 136 (241)
.+....+++++|+++|++++|||.|.++ ..|.
T Consensus 64 ~~La~~A~~~aL~~agi~~~dId~li~~s~~~~ 96 (378)
T PRK06816 64 AQMAAEAIRDLLDDAGFSLGDIELLACGTSQPD 96 (378)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEECCCC
Confidence 4555669999999999999999998874 3554
No 184
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=43.52 E-value=53 Score=25.25 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=36.7
Q ss_pred CCCCCeEEeeeeeec-----ccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 73 IGKKNTILSNCRRTY-----VTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 73 ~~~~~~il~~~~~s~-----~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
++++++||...+... ..-++|++.+.+... ..+.+++.++.|++...+..+.+.
T Consensus 10 ~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~------~Aa~REl~EE~Gl~~~~~~~~~~~ 68 (129)
T cd04678 10 LNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFE------ECAAREVLEETGLHIENVQFLTVT 68 (129)
T ss_pred ECCCCeEEEEeccCCCCCCeEECCcccccCCCCHH------HHHHHHHHHHhCCcccceEEEEEE
Confidence 456678887776532 245678887765432 257889999999998776666553
No 185
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=42.81 E-value=44 Score=30.98 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCC
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGM 137 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs 137 (241)
+.+..+++++|+++|++++|||.|-. .|.|.
T Consensus 275 ~~~~~~i~~al~~agi~~~dId~v~~-h~tgt 305 (406)
T cd00834 275 EGAARAMRAALADAGLSPEDIDYINA-HGTST 305 (406)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEec-ccccC
Confidence 45567899999999999999998864 45554
No 186
>PRK07937 lipid-transfer protein; Provisional
Probab=42.70 E-value=36 Score=32.18 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
.+....++.++|+++|++++|||.+...
T Consensus 25 ~el~~eA~~~Al~DAgl~~~dID~~~~~ 52 (352)
T PRK07937 25 VEMLMPCFAELYAELGITKSDIGFWCSG 52 (352)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 5566779999999999999999988543
No 187
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=42.10 E-value=40 Score=31.85 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
+....+++++|+++|++++|||.|.++.-
T Consensus 24 eL~~eA~~~AL~dAgl~~~dId~vi~g~~ 52 (389)
T PRK07516 24 SLIVRVAREALAHAGIAAGDVDGIFLGHF 52 (389)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEEe
Confidence 44556999999999999999999988653
No 188
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=41.29 E-value=18 Score=37.55 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=26.1
Q ss_pred eccChhhhHHHHHHHHhCCCCC-CCC---cHHHHhhhh
Q psy16095 207 TIDIAVGNCLDRFARVLKLSND-PSP---GYNIEQMAK 240 (241)
Q Consensus 207 t~DdalGe~~Dkvar~LGl~~~-p~P---Gp~iE~lA~ 240 (241)
..--|+|.+||++|++||+... -|- |..+|.+|.
T Consensus 558 ~~tSS~GRlFDaVAalLGl~~~~syEGqAa~~LE~lA~ 595 (711)
T TIGR00143 558 PLTTSTGRLFDAVAAALGLCGERTYEGEAAIALEALAL 595 (711)
T ss_pred cccCCCCcHHHHHHHHcCCCcccccchhhHHHHHHHHh
Confidence 3468999999999999999842 133 577888874
No 189
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=40.73 E-value=45 Score=32.04 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhh-CCCCcCCcCEEEEEcC-CCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 105 KSKVLEVLKEALDQ-AKVSRDDIDVICYTKG-PGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 105 ~e~L~~~I~~~L~~-agi~~~DID~IAvt~G-PGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
.+....+++++|++ ++++++|||.|.+.+- ++...|--++...+.......++|.+.|+
T Consensus 27 ~~L~~~a~~~al~r~a~i~~~~Id~vi~G~~~~~~~~g~~~ar~~~l~~Gl~~~vp~~tV~ 87 (400)
T PRK13359 27 DDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLPHGVPGSTIN 87 (400)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEEe
Confidence 44455689999996 5999999999999643 33322222232333223333346667775
No 190
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=40.29 E-value=60 Score=26.00 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=36.6
Q ss_pred CCCCCeEEeeeeeec---ccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 73 IGKKNTILSNCRRTY---VTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 73 ~~~~~~il~~~~~s~---~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
+++++++|.-.+... ..-++|++-|.+.. .-.+++++.++.|++.+.+..+..
T Consensus 11 ~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~------~~aA~REv~EEtGl~~~~~~~l~~ 66 (147)
T cd03671 11 FNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDP------EQAALRELEEETGLDPDSVEIIAE 66 (147)
T ss_pred EeCCCEEEEEEEcCCCCCEECCcCCCCCCcCH------HHHHHHHHHHHHCCCcCceEEEEE
Confidence 455677877665442 34677888775442 225899999999999877776665
No 191
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=40.12 E-value=42 Score=31.99 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHh--CCCeEEeccchhhhhh
Q psy16095 107 KVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLW--NKPIVGVNHCIGHIEM 171 (241)
Q Consensus 107 ~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l--~iPli~V~HleaHa~s 171 (241)
....+++++|+++|++++|||.|-. .|.|...+=.+- +++|...+ .+|+-.+-.+.+|...
T Consensus 255 ~~~~ai~~Al~~agi~p~dId~i~~-hgtgt~~~D~~E---~~al~~~fg~~~~v~s~K~~~GH~~~ 317 (381)
T PRK05952 255 SAIAAIQQCLARSGLTPEDIDYIHA-HGTATRLNDQRE---ANLIQALFPHRVAVSSTKGATGHTLG 317 (381)
T ss_pred HHHHHHHHHHHHhCCCHHHeeEEEc-cCCCCCCCcHHH---HHHHHHHcCCCCeeecchhhhccChH
Confidence 3557899999999999999999864 455543221111 12233333 3566566566666554
No 192
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=39.98 E-value=53 Score=31.36 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=36.7
Q ss_pred HHHHHHHHHhh-CCCCcCCcCEEEEEcCCCCCChhHHH-HHHHHHHHHH--hCCCeEEeccchhhhhh
Q psy16095 108 VLEVLKEALDQ-AKVSRDDIDVICYTKGPGMGGPLTVV-AIVARTLALL--WNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 108 L~~~I~~~L~~-agi~~~DID~IAvt~GPGs~tgLRVG-~s~Ak~LA~~--l~iPli~V~HleaHa~s 171 (241)
...+++++|++ +|++++|||.|-.- |.|.-.+=.+- .++.+.+... -.+|+-.+-...+|...
T Consensus 285 ~~~ai~~Al~~~Agi~~~dId~ie~h-gtgt~~~D~~E~~al~~~~~~~~~~~~~v~s~K~~~GH~~~ 351 (421)
T PTZ00050 285 ARRCMENALKDGANININDVDYVNAH-ATSTPIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLG 351 (421)
T ss_pred HHHHHHHHHHhccCCChhhCCEEECC-CccCCCCCHHHHHHHHHHhccccCCCceEECccccccccHH
Confidence 44689999999 99999999999763 55542221121 1222222222 13455555556666553
No 193
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=39.91 E-value=59 Score=26.22 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=32.7
Q ss_pred cCCCCCeEEeeeeee-----cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcC
Q psy16095 72 SIGKKNTILSNCRRT-----YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRD 124 (241)
Q Consensus 72 ~~~~~~~il~~~~~s-----~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~ 124 (241)
.++++|+||..++.. +..-++|+|-|.+...+ .+++++.++.|++..
T Consensus 19 I~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~------aa~RE~~EE~Gl~v~ 70 (144)
T cd03430 19 VENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTE------AFERIAKDELGLEFL 70 (144)
T ss_pred EEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHH------HHHHHHHHHHCCCcc
Confidence 345668888776642 13467788888654433 589999999998754
No 194
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=38.60 E-value=45 Score=33.54 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHH-HHHHHHHHHhCCCeEEeccchhhhhh
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVA-IVARTLALLWNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~-s~Ak~LA~~l~iPli~V~HleaHa~s 171 (241)
+..+++++|+++|++++|||.|-. .|.|.-.+=.+-. ++.+.+...-.+|+-.+-.+.+|...
T Consensus 407 ~~~am~~AL~~AGl~p~dIdyIna-HGTGT~~gD~~E~~Ai~~~Fg~~~~~pV~S~Ks~iGH~~g 470 (540)
T PLN02787 407 VILCIEKALAQSGVSKEDVNYINA-HATSTKAGDLKEYQALMRCFGQNPELRVNSTKSMIGHLLG 470 (540)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEc-cCccCCCCCHHHHHHHHHHhCCCCCceeeCCCCCcCCCcc
Confidence 457899999999999999999863 4555433322211 22222221113466666677778654
No 195
>PRK10331 L-fuculokinase; Provisional
Probab=37.81 E-value=2.4e+02 Score=27.26 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTK-GPG 136 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~-GPG 136 (241)
--+.+...+++++++. ...+|.+|++|. +.+
T Consensus 52 ~w~~~~~~~~~~~~~~--~~~~I~~I~is~~~~~ 83 (470)
T PRK10331 52 ILQRFADCCRQINSEL--TECHIRGITVTTFGVD 83 (470)
T ss_pred HHHHHHHHHHHHHHhC--CccceEEEEEeccccc
Confidence 3556667777887765 346799999976 554
No 196
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=37.61 E-value=33 Score=32.61 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
+....+++++|+++|++++|||.|.+..
T Consensus 34 ~L~~~a~~~AL~~agl~~~dID~vi~g~ 61 (394)
T PRK06445 34 ELAAMLINRLIEKTGIKPEEIDDIITGC 61 (394)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCeeEEEe
Confidence 3445689999999999999999998865
No 197
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=37.56 E-value=66 Score=30.86 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHH-HHHHHHHHH--hCCCeEEeccchhhhhh
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVA-IVARTLALL--WNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~-s~Ak~LA~~--l~iPli~V~HleaHa~s 171 (241)
...+++++|+++|++++|||.|- ..|+|.-.+=.+-. ++.+.+... -.+|+-.+--+.+|...
T Consensus 280 ~~~a~~~Al~~agi~~~did~ie-~hgtgt~~~D~~E~~al~~~fg~~~~~~~~v~s~K~~~GH~~~ 345 (414)
T PRK08722 280 GALAMEAAMRDAGVTGEQIGYVN-AHGTSTPAGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLG 345 (414)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEE-ccCccCCCCCHHHHHHHHHHhcccCCCCceeeCcccccccchH
Confidence 34578999999999999999875 46777654422222 222222211 12566556666677654
No 198
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=37.36 E-value=4.6e+02 Score=26.62 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=56.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEE-eccchhhhhhcc
Q psy16095 95 FLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVG-VNHCIGHIEMGR 173 (241)
Q Consensus 95 vvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~-V~HleaHa~sa~ 173 (241)
..|+..+-.+..+|-.--+..| ...++.+.+| -|..|.... ...-+.-+...+.+++. +|-=.|-++ ++
T Consensus 95 ~~~eeisa~~L~~lk~~ae~~l------g~~v~~~VIt-VPayF~d~q--R~at~~A~~iaGl~vlrlinEPtAAAl-ay 164 (579)
T COG0443 95 YTPEEISAMILTKLKEDAEAYL------GEKVTDAVIT-VPAYFNDAQ--RQATKDAARIAGLNVLRLINEPTAAAL-AY 164 (579)
T ss_pred eCHHHHHHHHHHHHHHHHHHhh------CCCcceEEEE-eCCCCCHHH--HHHHHHHHHHcCCCeEEEecchHHHHH-Hh
Confidence 4455555544444333222222 2467777776 599998765 23334445555665543 332222222 12
Q ss_pred cccCCCCcEEEEEe--CCce--EEEEEeCCcEEEEeeeccChhh
Q psy16095 174 NVTKCENPTVLYVS--GGNT--QVIAYSRQRYRIFGETIDIAVG 213 (241)
Q Consensus 174 ~~~~~~~Pl~L~VS--GGhT--~l~~~~~~~~~ilg~t~DdalG 213 (241)
-........+|++| ||++ +|+...++.+++++..-|..+|
T Consensus 165 g~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LG 208 (579)
T COG0443 165 GLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLG 208 (579)
T ss_pred HhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccC
Confidence 11111233678888 5564 4444566778887766666665
No 199
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=35.82 E-value=36 Score=30.85 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEE-EcCCC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICY-TKGPG 136 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAv-t~GPG 136 (241)
.+-...+.+++|+++|++++|||.|.+ |..|.
T Consensus 53 ~~la~~Aa~~aL~~ag~~~~~Id~li~~t~~~d 85 (326)
T PRK05963 53 SDLAASAGDMALSDAGIERSDIALTLLATSTPD 85 (326)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCC
Confidence 344456899999999999999999987 55664
No 200
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=35.17 E-value=40 Score=31.81 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 102 QHHKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 102 r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
+.-.+....+++.+|+++|++++|||.+.+..
T Consensus 24 ~~~~~L~~~a~~~al~dagl~~~~ID~vv~g~ 55 (382)
T PRK07801 24 VHPADLGAHVLKGLVDRTGIDPAAVDDVIFGC 55 (382)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEe
Confidence 34455566799999999999999999998853
No 201
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=34.91 E-value=81 Score=24.18 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=34.5
Q ss_pred CCCCeEEeeeeee---cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 74 GKKNTILSNCRRT---YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 74 ~~~~~il~~~~~s---~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
+++++||..++.. +..-++|++-|-+... ..+++++.++.|++...+..+.+
T Consensus 11 ~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~------~aa~REl~EEtGl~~~~~~~~~~ 65 (125)
T cd04696 11 APDGRILLVRTTKWRGLWGVPGGKVEWGETLE------EALKREFREETGLKLRDIKFAMV 65 (125)
T ss_pred CCCCCEEEEEccCCCCcEeCCceeccCCCCHH------HHHHHHHHHHhCCcccccceEEE
Confidence 4456677655432 2346778887755432 25889999999998877776554
No 202
>PRK13321 pantothenate kinase; Reviewed
Probab=34.53 E-value=3.3e+02 Score=24.17 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEc-CCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTK-GPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~-GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
..+...+++++++.++.+++++.|+++. -|- + --.+.+.+...++++.+.++
T Consensus 37 ~~~~~~l~~l~~~~~~~~~~i~~i~vssVvp~----~--~~~i~~~~~~~~~~~~~~~~ 89 (256)
T PRK13321 37 DELGILLLSLFRHAGLDPEDIRAVVISSVVPP----L--NYSLESACKRYFGIKPLFVG 89 (256)
T ss_pred HHHHHHHHHHHHHcCCChhhCCeEEEEeeccc----H--HHHHHHHHHHHhCCCeEEEC
Confidence 4555677788888888778899998854 332 1 12233334445677665553
No 203
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=34.34 E-value=1.1e+02 Score=25.39 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=29.6
Q ss_pred cCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec---cchhhhhhcc
Q psy16095 123 RDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN---HCIGHIEMGR 173 (241)
Q Consensus 123 ~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~---HleaHa~sa~ 173 (241)
+.++|+|.++-||++...-..=..+.+.+ ..++|+.+|- .+.++++.+.
T Consensus 40 ~~~~dgvil~gG~~~~~~~~~~~~i~~~~--~~~~PvlGIC~G~Qlla~~~Gg~ 91 (184)
T cd01743 40 LLNPDAIVISPGPGHPEDAGISLEIIRAL--AGKVPILGVCLGHQAIAEAFGGK 91 (184)
T ss_pred hcCCCEEEECCCCCCcccchhHHHHHHHH--hcCCCEEEECHhHHHHHHHhCCE
Confidence 46799999999999853221111222222 3479999986 4555555443
No 204
>KOG1391|consensus
Probab=34.25 E-value=35 Score=32.05 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=29.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 94 GFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 94 GvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
|..|+++.-.- .|+|+.+|+.+|+++.|||.|-|..
T Consensus 285 GcdP~IMGIGP----vPAI~~vLKksGlkl~DiDl~EvNE 320 (396)
T KOG1391|consen 285 GCDPSIMGIGP----VPAISGVLKKSGLKLKDIDLVEVNE 320 (396)
T ss_pred ccChhhccccC----cHHHHHHHHHcCCcccccceEEech
Confidence 77777665443 3689999999999999999999865
No 205
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=34.13 E-value=88 Score=25.92 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=35.7
Q ss_pred cCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec---cchhhhhhcc
Q psy16095 123 RDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN---HCIGHIEMGR 173 (241)
Q Consensus 123 ~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~---HleaHa~sa~ 173 (241)
+++.|+|.++-||++..-+..-..+.+. +...++|+++|- .+.++++.+.
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~-~~~~~~PilGIC~G~Q~la~~~G~~ 92 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIRE-ARERKIPILGICLGHQILAHALGGK 92 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHH-HHHTTSEEEEETHHHHHHHHHTTHE
T ss_pred hcCCCEEEECCcCCcccccccccccccc-ccccceEEEEEeehhhhhHHhcCCc
Confidence 5789999999999998765555555553 334799999986 4555555543
No 206
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=33.87 E-value=39 Score=30.78 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
.+....+++++|+++|++++|||.|.+.
T Consensus 52 ~~la~~A~~~aL~~ag~~~~dId~vi~~ 79 (326)
T CHL00203 52 TKLAAEAANKALDKAHMDPLEIDLIILA 79 (326)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 4555679999999999999999999874
No 207
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=33.83 E-value=66 Score=24.80 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=34.6
Q ss_pred CCeEEeeeeee----cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 76 KNTILSNCRRT----YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 76 ~~~il~~~~~s----~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
++++|...+.. ...-++|++-+-+.. .-.+++++.+++|++..++..+..
T Consensus 14 ~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~------~~aa~RE~~EE~Gl~~~~~~~~~~ 67 (129)
T cd04664 14 EGRVLLLRRSDKYAGFWQSVTGGIEDGESP------AEAARREVAEETGLDPERLTLLDR 67 (129)
T ss_pred CCEEEEEEeCCCCCCcccccCcccCCCCCH------HHHHHHHHHHHHCCChhheEEEee
Confidence 56777666543 234567888776554 236899999999998877776654
No 208
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=33.61 E-value=76 Score=24.29 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=35.5
Q ss_pred CCCCCeEEeeeeeec--ccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 73 IGKKNTILSNCRRTY--VTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 73 ~~~~~~il~~~~~s~--~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
++.++++|...+... ..-++|.|-|.+... -.+++++.++.|++...+..+++-.+
T Consensus 15 ~~~~~~vLL~~r~~~~~w~~PgG~v~~gEt~~------~aa~REl~EE~Gi~~~~~~~~~~~~~ 72 (132)
T cd04677 15 LNEQGEVLLQKRSDTGDWGLPGGAMELGESLE------ETARRELKEETGLEVEELELLGVYSG 72 (132)
T ss_pred EeCCCCEEEEEecCCCcEECCeeecCCCCCHH------HHHHHHHHHHhCCeeeeeEEEEEecC
Confidence 344567766554432 234667776655422 25899999999999887777764433
No 209
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=33.14 E-value=1.1e+02 Score=22.89 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=34.9
Q ss_pred CCCCCeEEeeeeee--cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcC-CcCEEEEE
Q psy16095 73 IGKKNTILSNCRRT--YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRD-DIDVICYT 132 (241)
Q Consensus 73 ~~~~~~il~~~~~s--~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~-DID~IAvt 132 (241)
+++++++|...+.. +..-++|++-+-+... ..+++++.++.|+... .+..++..
T Consensus 8 ~~~~~~vLL~~r~~~~~w~~PgG~ve~gEt~~------~aa~REl~EEtG~~~~~~~~~~~~~ 64 (120)
T cd04680 8 TDADGRVLLVRHTYGPGWYLPGGGLERGETFA------EAARRELLEELGIRLAVVAELLGVY 64 (120)
T ss_pred ECCCCeEEEEEECCCCcEeCCCCcCCCCCCHH------HHHHHHHHHHHCCccccccceEEEE
Confidence 45567776655432 2345677777655432 2588999999999987 66666653
No 210
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=32.77 E-value=69 Score=30.63 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHh--CCCeEEeccchhhhhh
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLW--NKPIVGVNHCIGHIEM 171 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l--~iPli~V~HleaHa~s 171 (241)
+.+..+++++|++++++++|||.|-. .|.|.-.+=.+- +++|...+ .+|+-.+-.+.+|...
T Consensus 275 ~~~~~ai~~AL~~Agi~p~dId~I~~-Hgtgt~~~D~~E---~~Ai~~~fg~~~pv~s~K~~~GH~~~ 338 (405)
T PRK09116 275 ETMQIAMELALKDAGLAPEDIGYVNA-HGTATDRGDIAE---SQATAAVFGARMPISSLKSYFGHTLG 338 (405)
T ss_pred HHHHHHHHHHHHHhCCCHHHcCEEEC-cCccCCCCCHHH---HHHHHHHhCCCCeeECcchhhcccHH
Confidence 44567999999999999999998863 455543332211 22333333 3676666666777643
No 211
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=32.36 E-value=87 Score=30.03 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhCC-CCc-CCcCEEEEE
Q psy16095 102 QHHKSKVLEVLKEALDQAK-VSR-DDIDVICYT 132 (241)
Q Consensus 102 r~H~e~L~~~I~~~L~~ag-i~~-~DID~IAvt 132 (241)
+...+.+..++.++|+++| +++ +|||.+.++
T Consensus 23 ~s~~eL~~eA~~~Al~DAG~l~~~~dId~~~~~ 55 (385)
T PRK06066 23 VSFREMMFEAASRAYKDAGNINPRRDVDSFISC 55 (385)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCChhcCCEEEEe
Confidence 3456677789999999999 987 799999874
No 212
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=32.30 E-value=1e+02 Score=23.14 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=33.9
Q ss_pred CCCeEEeeeeee-cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 75 KKNTILSNCRRT-YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 75 ~~~~il~~~~~s-~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
.++++|...+.. ...-++|.+-|.+.... .+.+++.++.|++..++..+..
T Consensus 9 ~~~~vLlv~r~~~~w~~PgG~ve~gE~~~~------aa~REl~EEtGl~~~~~~~~~~ 60 (112)
T cd04667 9 RGGRVLLVRKSGSRWALPGGKIEPGETPLQ------AARRELQEETGLQGLDLLYLFH 60 (112)
T ss_pred cCCEEEEEEcCCCcEeCCCCcCCCCCCHHH------HHHHHHHHHhCCcccceEEEEE
Confidence 345676655432 23466788877554332 5889999999999887776654
No 213
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=31.78 E-value=89 Score=25.53 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
.+.-..++++++++.+++++||-.|-+|.-|-+-..+ -...|+.+..--++|+.....
T Consensus 19 ~~at~eLl~~i~~~N~l~~edivSv~FT~T~DL~a~F--PA~aaR~~~~~~~Vplmc~qE 76 (117)
T cd02185 19 LEATRELLEEIIERNNIKPEDIISVIFTVTPDLDAAF--PAKAARELGGWKYVPLMCAQE 76 (117)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCcccccC--hHHHHHhcCCCCCcceeecCc
Confidence 3344458888899999999999999999999753332 124566665333889877553
No 214
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=31.78 E-value=1.1e+02 Score=22.97 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=34.8
Q ss_pred CCCCCeEEeeeeeec--ccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCC--cCEEEEE
Q psy16095 73 IGKKNTILSNCRRTY--VTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDD--IDVICYT 132 (241)
Q Consensus 73 ~~~~~~il~~~~~s~--~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~D--ID~IAvt 132 (241)
++.++++|.-.+... ..-++|.+-|.+.. ...+++++.++.|++... +..+..-
T Consensus 8 ~~~~~~vLl~~r~~~~~w~~PgG~ve~~Es~------~~aa~REl~EEtGl~~~~~~~~~~~~~ 65 (118)
T cd04690 8 LVRDGRVLLVRKRGTDVFYLPGGKIEAGETP------LQALIRELSEELGLDLDPDSLEYLGTF 65 (118)
T ss_pred EecCCeEEEEEECCCCcEECCCCccCCCCCH------HHHHHHHHHHHHCCccChhheEEEEEE
Confidence 344567776544432 34677888876542 235889999999998766 6666543
No 215
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=31.12 E-value=95 Score=25.45 Aligned_cols=55 Identities=16% Similarity=0.330 Sum_probs=38.0
Q ss_pred cCCCCCeEEeeeeeec---ccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 72 SIGKKNTILSNCRRTY---VTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 72 ~~~~~~~il~~~~~s~---~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
.++.+|+||.-++... ..-++|++.|.+.... .+.+++.++.|++..++..++..
T Consensus 15 i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~------aa~REl~EEtG~~~~~~~~~~~~ 72 (156)
T PRK00714 15 LLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQ------AMYRELYEEVGLRPEDVEILAET 72 (156)
T ss_pred EEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHH------HHHHHHHHHhCCCccceEEEEEc
Confidence 4566778877665432 3466788877654322 57899999999998878777754
No 216
>PLN03171 chalcone synthase-like protein; Provisional
Probab=30.90 E-value=87 Score=29.98 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=22.4
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEE-EcCC
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICY-TKGP 135 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAv-t~GP 135 (241)
..+.+++|+++|++++|||.|.+ |.-|
T Consensus 113 ~~Aa~~aL~~ag~~~~dId~li~~t~t~ 140 (399)
T PLN03171 113 AEAAKKAIAEWGRPAADITHLVVTTNSG 140 (399)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEEcCCC
Confidence 44899999999999999999976 4334
No 217
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=30.69 E-value=1.9e+02 Score=25.26 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=39.2
Q ss_pred CCCCCeEEeee--eeecc---cCCCC----cccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHH
Q psy16095 73 IGKKNTILSNC--RRTYV---TPPGE----GFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTV 143 (241)
Q Consensus 73 ~~~~~~il~~~--~~s~~---~~~~g----GvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRV 143 (241)
++++++++... +.+.. ...+| +|+|+.-.+...+.+.. .+|+++. .-.|+-|-||..+.-..+-+|
T Consensus 74 v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLk---l~L~~ar--~lgi~~Vlvtcd~dN~ASrkv 148 (174)
T COG3981 74 VDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLK---LALEKAR--ELGIKKVLVTCDKDNIASRKV 148 (174)
T ss_pred EecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHH---HHHHHHH--HcCCCeEEEEeCCCCchhhHH
Confidence 34467777644 33332 12233 89998887777766544 3444432 235888999988876655443
No 218
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=30.29 E-value=1e+02 Score=23.78 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred CCCeEEeeeeee----cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 75 KKNTILSNCRRT----YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 75 ~~~~il~~~~~s----~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
.+++||...+.. ...-++|++-|-+...+ .++++++++.|++....+.+.+
T Consensus 10 ~~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~------aa~RE~~EEtGl~v~~~~~~~~ 64 (128)
T cd04687 10 KNDKILLIKHHDDGGVWYILPGGGQEPGETLED------AAHRECKEEIGIDVEIGPLLFV 64 (128)
T ss_pred ECCEEEEEEEEcCCCCeEECCCcccCCCCCHHH------HHHHHHHHHHCCccccCcEEEE
Confidence 356777655431 12477888888554333 5899999999999877665554
No 219
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=30.20 E-value=40 Score=32.34 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEE-----EcCCCC--CChhHHHHHHHHHHHHHhCCCeEE
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICY-----TKGPGM--GGPLTVVAIVARTLALLWNKPIVG 161 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAv-----t~GPGs--~tgLRVG~s~Ak~LA~~l~iPli~ 161 (241)
.+.+-.+++++|+++++++++||+|+. .--|.. -..+-+|- ...||..+++|+|.
T Consensus 67 g~~~a~av~~~l~~~~i~~~~I~~IgsHGQTv~H~P~~~~~~TlQiG~--~~~iA~~tgi~vV~ 128 (364)
T PF03702_consen 67 GELFADAVNQFLKKNGISPSDIDLIGSHGQTVFHRPEGQHPFTLQIGD--PAVIAERTGITVVS 128 (364)
T ss_dssp HHHHHHHHHHHHHHCT--GGGEEEEEE--EEEEEECCCTTTEEEEES---HHHHHHHHSS-EEE
T ss_pred HHHHHHHHHHHHHHcCCCcccccEEEeCCcceecCcCCCCCceEecCC--HHHHHHHHCcCEEe
Confidence 444667999999999999999999994 334532 12344443 45578888887754
No 220
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=29.92 E-value=1.4e+02 Score=22.17 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=34.4
Q ss_pred CCc-EEEEEeCCceEEEEEeCCcEEEEeeeccChhhhHHHHHHHHh
Q psy16095 179 ENP-TVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVL 223 (241)
Q Consensus 179 ~~P-l~L~VSGGhT~l~~~~~~~~~ilg~t~DdalGe~~Dkvar~L 223 (241)
.+| +++=...-.+.+..+..|++.+.|......+-++++++.+.|
T Consensus 37 ~fpgl~~r~~~p~~t~~IF~sGki~itGaks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 37 RFPGLIYRLRNPKATVLIFSSGKIVITGAKSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TESSEEEEETTTTEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCeEEEeecCCcEEEEEEcCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 356 455455445677778999999999988888888899888876
No 221
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=29.82 E-value=68 Score=28.89 Aligned_cols=40 Identities=25% Similarity=0.156 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCC
Q psy16095 100 TAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGG 139 (241)
Q Consensus 100 A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~t 139 (241)
....-...|...+.+++++.+++..+=-.++++.||-.-|
T Consensus 127 ~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT 166 (245)
T PRK09136 127 FTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLET 166 (245)
T ss_pred CcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCC
Confidence 3444566777778888888887654445777889996544
No 222
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=29.70 E-value=60 Score=30.89 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCCC
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMG 138 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs~ 138 (241)
...+++++|+++|++++|||.|-. .|.|.-
T Consensus 283 ~~~a~~~Al~~Agi~~~dId~v~~-hgtgt~ 312 (410)
T PRK07103 283 EMRVIRAALRRAGLGPEDIDYVNP-HGTGSP 312 (410)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEc-cCCCCC
Confidence 357899999999999999998864 565543
No 223
>PRK09213 pur operon repressor; Provisional
Probab=29.40 E-value=87 Score=28.88 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=52.2
Q ss_pred hccccCCCcCCCCCeEEeeeeeec-------ccCCCCcc--cchhhhHHHHHHHHHHHHHHHhhCC--------------
Q psy16095 64 SQNQRGKGSIGKKNTILSNCRRTY-------VTPPGEGF--LPRETAQHHKSKVLEVLKEALDQAK-------------- 120 (241)
Q Consensus 64 ~~~~~~~~~~~~~~~il~~~~~s~-------~~~~~gGv--vPe~A~r~H~e~L~~~I~~~L~~ag-------------- 120 (241)
+.-+..+++|++|-.|+-+.-..+ +...-||| +|.....+-.+.+..+.+.+.+..-
T Consensus 31 ~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~~~rilpGgf~y~sdll~ 110 (271)
T PRK09213 31 ERYGAAKSSISEDLVIIKETFEKQGIGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSEPDRILPGGYLYLSDLLG 110 (271)
T ss_pred HHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHhCCccCCCCeEEeCcccC
Confidence 344677889998855443332221 13445565 6876666555555555554433321
Q ss_pred ---------------CCcCCcCEEEE-EcCCCCCChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 121 ---------------VSRDDIDVICY-TKGPGMGGPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 121 ---------------i~~~DID~IAv-t~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
+...++|+|+- ..+ |+-+|-.+|..+++|++.+-.
T Consensus 111 ~P~~l~~i~~~la~~~~~~~iD~Vvtvet~---------GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 111 NPSILRKIGRIIASAFADKKIDAVMTVETK---------GIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred CHHHHHHHHHHHHHHhcccCCCEEEEEccc---------cHHHHHHHHHHHCCCEEEEEE
Confidence 22235676653 122 556667777788999988864
No 224
>KOG4417|consensus
Probab=29.37 E-value=1.5e+02 Score=26.93 Aligned_cols=67 Identities=27% Similarity=0.262 Sum_probs=42.7
Q ss_pred cCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 89 TPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 89 ~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
+.+| +|-.-++.-.+.+.+.++.+..+-. .-.+|.|-| -|-|-+-. .|...|-.|....++|.++|-
T Consensus 84 e~pY---vPgfLafREa~v~l~~L~~v~~erh--~fr~dvilv-DGnG~lHp--rGfGlACHlGvL~~lp~iGVa 150 (261)
T KOG4417|consen 84 ELPY---VPGFLAFREAEVMLDFLKSVITERH--EFRPDVILV-DGNGELHP--RGFGLACHLGVLSGLPSIGVA 150 (261)
T ss_pred ccCc---CccceeeehhHHHHHHHHhcccccC--CccccEEEE-cCCceEcc--cccchhhhhhHhcCCCccchh
Confidence 4555 6666677777888888877775432 123666665 35554322 244456677888899999985
No 225
>PRK13318 pantothenate kinase; Reviewed
Probab=28.98 E-value=3.3e+02 Score=24.15 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEc-CCCC
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTK-GPGM 137 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~-GPGs 137 (241)
+...+++++++.++++.++++|+++. .|+.
T Consensus 39 ~~~~l~~l~~~~~~~~~~i~~I~issVvp~~ 69 (258)
T PRK13318 39 YGVWLKQLLGLSGLDPEDITGIIISSVVPSV 69 (258)
T ss_pred HHHHHHHHHHHcCCCcccCceEEEEEecCch
Confidence 55677888888888878999999854 4543
No 226
>PLN02325 nudix hydrolase
Probab=28.96 E-value=1.2e+02 Score=24.48 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCeEEeeeeee-----cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 76 KNTILSNCRRT-----YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 76 ~~~il~~~~~s-----~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
+++||...+.. +..-++|.+.+.+.... .+++++.++.|++...++.+.+.
T Consensus 19 ~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~------aa~REv~EEtGl~v~~~~~l~~~ 74 (144)
T PLN02325 19 GNSVLLGRRRSSIGDSTFALPGGHLEFGESFEE------CAAREVKEETGLEIEKIELLTVT 74 (144)
T ss_pred CCEEEEEEecCCCCCCeEECCceeCCCCCCHHH------HHHHHHHHHHCCCCcceEEEEEe
Confidence 35777655542 23466777776544333 58999999999998888777763
No 227
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=28.95 E-value=99 Score=29.21 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
...+.++.+++++|+++|++++|||.+.+-..
T Consensus 202 ~y~~~~~~~~~~~l~~~g~~~~did~~i~H~p 233 (379)
T TIGR01835 202 QYLNAFENAWNDYAKRTGLSLADFAAFCFHVP 233 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHcCEEEECCC
Confidence 46677888999999999999999999998653
No 228
>KOG1394|consensus
Probab=28.07 E-value=37 Score=33.14 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAv 131 (241)
...++.+|+++|++++|||.|=.
T Consensus 304 ~~am~raL~~Agl~pe~i~YvNA 326 (440)
T KOG1394|consen 304 VLAMERALKDAGLSPEDIDYVNA 326 (440)
T ss_pred HHHHHHHHHHcCCChhhcCeeec
Confidence 35799999999999999999964
No 229
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=27.93 E-value=1.1e+02 Score=27.43 Aligned_cols=29 Identities=31% Similarity=0.474 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcC
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKG 134 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~G 134 (241)
.+.++.+++++|++.+++ +|||.+....+
T Consensus 222 ~~~~~~~~~~~l~~~~~~-~~i~~~~~h~~ 250 (324)
T cd00827 222 HKLIAKVVRKALDRAGLS-EDIDYFVPHQP 250 (324)
T ss_pred hHHHHHHHHHHHHHcccc-cccceeeccCc
Confidence 455777999999999999 99999998766
No 230
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=27.89 E-value=96 Score=29.98 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=27.8
Q ss_pred CcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 125 DIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 125 DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
++|+|.++.|||....++--+...+.+- ..++|+++|-
T Consensus 233 ~~dgIilSgGPg~p~~~~~~i~~i~~~~-~~~~PilGIC 270 (382)
T CHL00197 233 QPDGILLSNGPGDPSAIHYGIKTVKKLL-KYNIPIFGIC 270 (382)
T ss_pred CCCEEEEcCCCCChhHHHHHHHHHHHHH-hCCCCEEEEc
Confidence 5799999999998765555444555543 2479999985
No 231
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=27.87 E-value=63 Score=21.12 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=18.7
Q ss_pred HHHHHHhhCCCCcCCcCEEEEE
Q psy16095 111 VLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 111 ~I~~~L~~agi~~~DID~IAvt 132 (241)
-+.++|++.|+++.+-|.|-.+
T Consensus 19 tV~~~L~~~gI~l~~~D~v~p~ 40 (43)
T PF03990_consen 19 TVGDALKELGITLGEEDKVSPS 40 (43)
T ss_pred CHHHHHHhCCCCCCCCCEEecC
Confidence 4788999999999999988653
No 232
>PF14174 YycC: YycC-like protein
Probab=27.85 E-value=17 Score=25.56 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHhCCCeEEeccchhhhhhccc
Q psy16095 141 LTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRN 174 (241)
Q Consensus 141 LRVG~s~Ak~LA~~l~iPli~V~HleaHa~sa~~ 174 (241)
|-|...+|..||..+|+|+--+-|+--|++...+
T Consensus 4 lqIS~eTA~kLs~~L~vPlE~lMHmPqHIL~qKl 37 (53)
T PF14174_consen 4 LQISPETAVKLSKKLGVPLEQLMHMPQHILMQKL 37 (53)
T ss_pred cccCHHHHHHHHHHHCCcHHHHhcCcHHHHHHHH
Confidence 4567789999999999999999999999886543
No 233
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=27.42 E-value=52 Score=25.05 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 99 ~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
...+.+.++...-|+++|+++|.+++||=.+-+.
T Consensus 22 ~d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iy 55 (101)
T cd06155 22 ETVEEQMESIFSKLREILQSNGLSLSDILYVTLY 55 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 4566788888899999999999999998666553
No 234
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=27.15 E-value=1.4e+02 Score=23.18 Aligned_cols=53 Identities=9% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCCCCeEEeeeeee------cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 73 IGKKNTILSNCRRT------YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 73 ~~~~~~il~~~~~s------~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
+++++++|.-.+.. ...-++|++-+.+...+ .+++++.++.|++..++..+..
T Consensus 10 ~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~------aa~RE~~EE~Gl~~~~~~~~~~ 68 (137)
T cd03424 10 YDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEE------AARRELEEETGYEAGDLEKLGS 68 (137)
T ss_pred EcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHH------HHHHHHHHHHCCCccceEEEee
Confidence 45557776644321 12346777777554332 6899999999999876666553
No 235
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=27.11 E-value=49 Score=30.63 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
.....+++++|+++|++++|||.+=+..
T Consensus 251 ~~~~~a~~~al~~Agl~~~did~~ei~d 278 (375)
T cd00829 251 DAARLAARRAYKMAGITPDDIDVAELYD 278 (375)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEecC
Confidence 3444699999999999999999997643
No 236
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=26.99 E-value=1.2e+02 Score=23.25 Aligned_cols=52 Identities=15% Similarity=0.304 Sum_probs=33.7
Q ss_pred CCCCCeEEeeeeee-----cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEE
Q psy16095 73 IGKKNTILSNCRRT-----YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVIC 130 (241)
Q Consensus 73 ~~~~~~il~~~~~s-----~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IA 130 (241)
+++++++|..++.. ...-++|.+-+.+...+ .+++++.++.|++..++..+.
T Consensus 9 ~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~------aa~RE~~EEtGl~~~~~~~~~ 65 (130)
T cd04681 9 LNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEE------ALIREIREETGLKVTELSYLF 65 (130)
T ss_pred EcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHH------HHHHHHHHHhCCcccceeEEE
Confidence 35567777665532 12346677766554322 578999999999887776654
No 237
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.64 E-value=1.2e+02 Score=27.88 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=28.6
Q ss_pred CcCEEEEEcCC--CCCCh-hHHHHHHHHHHHHHhCCCeEEe
Q psy16095 125 DIDVICYTKGP--GMGGP-LTVVAIVARTLALLWNKPIVGV 162 (241)
Q Consensus 125 DID~IAvt~GP--Gs~tg-LRVG~s~Ak~LA~~l~iPli~V 162 (241)
.+|.+|++.|| |.|++ -.+++...+.+....++|++..
T Consensus 166 gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~h 206 (282)
T TIGR01859 166 GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLH 206 (282)
T ss_pred CcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEE
Confidence 37899999998 45644 4456777888888889998654
No 238
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=26.20 E-value=3.6e+02 Score=21.97 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=30.7
Q ss_pred HHHHHHHhhCCCCcCCcCEEEEEc--C-CCCCCh-hHHHHHHHHHHHHHhCCCeEEec
Q psy16095 110 EVLKEALDQAKVSRDDIDVICYTK--G-PGMGGP-LTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 110 ~~I~~~L~~agi~~~DID~IAvt~--G-PGs~tg-LRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
..|.+++++- +++.|.|.. . -|..+. -+.-..|++.|...+++|++.++
T Consensus 44 ~~l~~~i~~~-----~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~D 96 (138)
T PRK00109 44 DRLEKLIKEW-----QPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVD 96 (138)
T ss_pred HHHHHHHHHh-----CCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 4455566653 467777751 1 233221 24445788889888899999987
No 239
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=26.09 E-value=95 Score=23.73 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=33.7
Q ss_pred CCCeEEeeeeeec--ccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 75 KKNTILSNCRRTY--VTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 75 ~~~~il~~~~~s~--~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
.++++|.-.+... ..-++|++-|.+...+ .+++++.++.|++......+++
T Consensus 10 ~~~~vLlv~~~~~~~~~lPGG~ve~gEt~~~------aa~REl~EEtGl~~~~~~~l~~ 62 (125)
T cd04689 10 AGNKVLLARVIGQPHYFLPGGHVEPGETAEN------ALRRELQEELGVAVSDGRFLGA 62 (125)
T ss_pred eCCEEEEEEecCCCCEECCCCcCCCCCCHHH------HHHHHHHHHhCceeeccEEEEE
Confidence 4566766554332 3467788877654333 5899999999998776665543
No 240
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=26.08 E-value=1e+02 Score=30.03 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCC--CCCChhHHHHHHHHHHHHHh----CCCeEEecc
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGP--GMGGPLTVVAIVARTLALLW----NKPIVGVNH 164 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GP--Gs~tgLRVG~s~Ak~LA~~l----~iPli~V~H 164 (241)
...+++.+|+++++++++||.|.+.+.. |.. |-+.||..+... .+|-+.||.
T Consensus 33 ~~~~~~~~l~r~~i~~~~id~vi~G~~~~~g~~-----g~n~aR~~al~aglp~~vp~~tvnr 90 (417)
T PRK06025 33 AATVLKALAERNGLNTADVDDIIWSTSSQRGKQ-----GGDLGRMAALDAGYDIKASGVTLDR 90 (417)
T ss_pred HHHHHHHHHHhcCCCHHHCCEEEEEcCCCcCcc-----cCcHHHHHHHhCCCCCCCCeeeecc
Confidence 3458999999999999999999997652 322 123455445444 456677763
No 241
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.87 E-value=1.8e+02 Score=25.10 Aligned_cols=33 Identities=21% Similarity=0.071 Sum_probs=21.7
Q ss_pred cCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 123 RDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 123 ~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
-.++|.|+- .. . . |+-+|-.+|..+++|++.+.
T Consensus 48 ~~~~d~Vv~-~e--a-~----Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 48 DDGITKIVT-IE--A-S----GIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred cCCCCEEEE-Ec--c-c----cHHHHHHHHHHHCCCEEEEE
Confidence 357898852 22 1 1 34556667778899999875
No 242
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=25.80 E-value=1.1e+02 Score=30.56 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhH
Q psy16095 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLT 142 (241)
Q Consensus 99 ~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLR 142 (241)
.....-.+.+...++++|+++++++.|||.|-.+-|-...+.++
T Consensus 298 ~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~ 341 (595)
T TIGR02350 298 ELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQ 341 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHH
Confidence 33444566677789999999999999999999987755445443
No 243
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=25.59 E-value=93 Score=26.37 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=24.6
Q ss_pred CcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 125 DIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 125 DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
+.|.|.++-|||+..-...-....+.+ ..++|+.+|-
T Consensus 43 ~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLGIC 79 (188)
T TIGR00566 43 LPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILGVC 79 (188)
T ss_pred CCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEEEC
Confidence 579999999999864322223333433 3489999986
No 244
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=25.51 E-value=2e+02 Score=29.64 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCC-CeEEeccchhhh
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNK-PIVGVNHCIGHI 169 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~i-Pli~V~HleaHa 169 (241)
-.+.+...++++|++++++++|||.|-..-|--..+.+| +.+...++. |+..+|--++-+
T Consensus 332 l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~------~~l~~~fg~~~~~~~nPdeaVA 392 (657)
T PTZ00186 332 LIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVV------EEVKKFFQKDPFRGVNPDEAVA 392 (657)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHH------HHHHHHhCCCccccCCCchHHH
Confidence 345556678899999999999999999876654445443 334444444 555555444443
No 245
>KOG2708|consensus
Probab=25.29 E-value=33 Score=31.78 Aligned_cols=44 Identities=45% Similarity=0.724 Sum_probs=31.3
Q ss_pred cCCCCCeEEeeeeeecccCCCCcccchhhhHHHHHHHHHHHHHHHhhC
Q psy16095 72 SIGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQA 119 (241)
Q Consensus 72 ~~~~~~~il~~~~~s~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~a 119 (241)
+|-.+++||+|.+.+|+.+++.|..|... .+.=...|-.+++++
T Consensus 17 Giv~~~~iLaN~R~TYitPPG~GFlP~~T----A~HHr~~il~Lv~~a 60 (336)
T KOG2708|consen 17 GIVRDGKILANPRHTYITPPGEGFLPRDT----ARHHRAWILGLVKQA 60 (336)
T ss_pred eEEecceeecCccccccCCCCCCCCcchh----HHHHHHHHHHHHHHH
Confidence 34456899999999999999999999653 344444454555543
No 246
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=24.93 E-value=42 Score=32.38 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.5
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAvt 132 (241)
.++++++|+++|++++|||.+=+.
T Consensus 303 ~~a~~~al~~AGl~~~DID~~ei~ 326 (402)
T PRK08242 303 VPATRKALAKAGLTVDDIDLFELN 326 (402)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEec
Confidence 359999999999999999999863
No 247
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=24.36 E-value=1.6e+02 Score=22.92 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=36.5
Q ss_pred CCCCCeEEeeeeeec-----ccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 73 IGKKNTILSNCRRTY-----VTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 73 ~~~~~~il~~~~~s~-----~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
++++++||...+... ..-++|.+-+.+...+ .+++++.++.|++...++.+.+..
T Consensus 8 ~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~------aa~REl~EEtG~~~~~~~~~~~~~ 67 (123)
T cd04671 8 LNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEE------AVKREVKEETGLDCEPTTLLSVEE 67 (123)
T ss_pred EcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHH------HHHHHHHHHHCCeeecceEEEEEc
Confidence 455677776554322 2356677766555433 589999999999988777776543
No 248
>PTZ00297 pantothenate kinase; Provisional
Probab=24.24 E-value=1e+03 Score=27.32 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=20.3
Q ss_pred ccccCCCCCCCCCchhhccccchhhhhhh
Q psy16095 32 RTYVTPPGEGFLPRETAQHHKSKVLEEKF 60 (241)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (241)
..||.|||.=-+|-. +.|.+.+|.|+|
T Consensus 1053 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 1079 (1452)
T PTZ00297 1053 IAYVQPPGGFAFPTY--IVHEASSLSEKL 1079 (1452)
T ss_pred EEEEeCCCCCCCcch--hhhhhhhhhhcc
Confidence 469999976666665 678788888775
No 249
>PRK13410 molecular chaperone DnaK; Provisional
Probab=23.94 E-value=1.3e+02 Score=31.12 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChh
Q psy16095 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPL 141 (241)
Q Consensus 99 ~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgL 141 (241)
.....-.+.+...|+++|+++|++++|||.|-.+-|-...+.+
T Consensus 302 ~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V 344 (668)
T PRK13410 302 SLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMV 344 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHH
Confidence 3444556677788999999999999999999887665443433
No 250
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=23.90 E-value=2.1e+02 Score=21.97 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=24.8
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 90 PPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 90 ~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
-++|++-+.+... ..+++++.++.|++...+..+..
T Consensus 30 ~PgG~ve~gEs~~------~aa~RE~~EEtGl~~~~~~~~~~ 65 (137)
T cd03427 30 GPGGKVEPGETPE------ECAIRELKEETGLTIDNLKLVGI 65 (137)
T ss_pred CCceeCCCCCCHH------HHHHHHHHHhhCeEeecceEEEE
Confidence 4566666644322 25889999999998877776654
No 251
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=23.67 E-value=1.3e+02 Score=30.47 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=30.2
Q ss_pred CCcCEEEEEcC--CCCCChhH-------HHHHHHHHHHHHhCCCeEEec
Q psy16095 124 DDIDVICYTKG--PGMGGPLT-------VVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 124 ~DID~IAvt~G--PGs~tgLR-------VG~s~Ak~LA~~l~iPli~V~ 163 (241)
.+=+.++|+.| +|+|||-. --+..||.+...++.|+|+|=
T Consensus 81 ~~~~t~vVvtGQQ~gLfTGPLYtiyK~is~I~LA~~l~~~l~~pvVPVF 129 (542)
T PF10079_consen 81 ADPNTFVVVTGQQAGLFTGPLYTIYKAISAIKLAKELEEELGRPVVPVF 129 (542)
T ss_pred cCCCCEEEEeCcccccccchHHHHHHHHHHHHHHHHHHHHhCCCeeeEE
Confidence 35577788665 78988832 356778889999999999973
No 252
>PRK07855 lipid-transfer protein; Provisional
Probab=23.67 E-value=69 Score=30.50 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
-.+.+..++.++|+++|++.+|||.+.+
T Consensus 24 ~~~L~~eA~~~Al~DAgl~~~dID~~~~ 51 (386)
T PRK07855 24 ELRLACEAVLAALDDAGLAPSDVDGLVT 51 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 3455667899999999999999999986
No 253
>CHL00101 trpG anthranilate synthase component 2
Probab=23.62 E-value=85 Score=26.62 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=29.4
Q ss_pred CCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec---cchhhhhhc
Q psy16095 124 DDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN---HCIGHIEMG 172 (241)
Q Consensus 124 ~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~---HleaHa~sa 172 (241)
.+.|+|.++-|||+..-.+.-....+. ...++|+++|- .+.++++-+
T Consensus 42 ~~~dgiiisgGpg~~~~~~~~~~i~~~--~~~~~PiLGIClG~Qlla~~~Gg 91 (190)
T CHL00101 42 LNIRHIIISPGPGHPRDSGISLDVISS--YAPYIPILGVCLGHQSIGYLFGG 91 (190)
T ss_pred CCCCEEEECCCCCChHHCcchHHHHHH--hcCCCcEEEEchhHHHHHHHhCC
Confidence 468999999999987433333333332 34589999986 344444433
No 254
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=23.55 E-value=1.4e+02 Score=30.17 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhH
Q psy16095 100 TAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLT 142 (241)
Q Consensus 100 A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLR 142 (241)
....-.+.+...|+++|++++++..|||.|-.+-|-...+.++
T Consensus 301 l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~ 343 (627)
T PRK00290 301 LTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQ 343 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHH
Confidence 3344556677789999999999999999999887755445443
No 255
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=23.52 E-value=1.8e+02 Score=22.23 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=32.8
Q ss_pred CCCCCeEEeeeeee----cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEE
Q psy16095 73 IGKKNTILSNCRRT----YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVIC 130 (241)
Q Consensus 73 ~~~~~~il~~~~~s----~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IA 130 (241)
++++++||.-.+.. +..-++|++-+.+... -.+++++.+++|++......+.
T Consensus 10 ~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~------~aa~RE~~EE~Gl~~~~~~~~~ 65 (127)
T cd04670 10 LNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIF------DGAVREVLEETGIDTEFVSVVG 65 (127)
T ss_pred EcCCCeEEEEEccCCCCCcEECCCccCCCCCCHH------HHHHHHHHHHHCCCcceeEEEE
Confidence 55667777654433 1345677776655422 2589999999999865444444
No 256
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=23.41 E-value=86 Score=29.86 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEe
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGV 162 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V 162 (241)
.++.+-.+++.+|++++++.+|||.+--.- +..-+ +..+|+ ++.+++|++++
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId~~~aGD---LlnQ~-i~s~f~---ar~l~iPf~Gl 102 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKEDIDYLFAGD---LLNQI-ISSSFA---ARDLGIPFLGL 102 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GGG-SEEEEEE---TTCCC-CHHHHH---HHHHT--EEEB
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCeEEEehh---hhhhh-HHHHHH---HHhcCCCccch
Confidence 444455699999999999999999986421 11111 233332 45678888887
No 257
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=23.38 E-value=45 Score=31.77 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.6
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAvt 132 (241)
..+++++|+++|++++|||.+=+.
T Consensus 294 ~~a~~~al~~agl~~~dId~~e~~ 317 (393)
T PRK05656 294 VSATRRCLDKAGWSLAELDLIEAN 317 (393)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEec
Confidence 468999999999999999999874
No 258
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=23.10 E-value=45 Score=31.98 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAv 131 (241)
..+++++|+++|++++|||.|=+
T Consensus 300 ~~A~~~al~~Agi~~~did~~ei 322 (399)
T PRK09052 300 IEAIPAALKQAGLKQDDLDWIEL 322 (399)
T ss_pred HHHHHHHHHHcCCCHHHcCEEEe
Confidence 46899999999999999999974
No 259
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=23.02 E-value=50 Score=31.58 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.8
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAv 131 (241)
..+++++|+++|++++|||.+=+
T Consensus 301 ~~a~~~al~~Agl~~~Did~~ei 323 (404)
T PRK06205 301 VPATEKALARAGLTLDDIDLIEL 323 (404)
T ss_pred HHHHHHHHHHcCCCHHHCCEeee
Confidence 45899999999999999999885
No 260
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.87 E-value=1.5e+02 Score=29.02 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHH--hCCCeEEeccchhhhhh
Q psy16095 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALL--WNKPIVGVNHCIGHIEM 171 (241)
Q Consensus 110 ~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~--l~iPli~V~HleaHa~s 171 (241)
.+++.+|+++|++++|||.|=. -|-+..-+=..-....|.+-.. .+.|+...-.+.+|.+.
T Consensus 280 ~am~~AL~~Agl~~~~idYina-HgTsT~~nD~~E~~ai~~vfg~~~~~~~vsstKs~tGH~lG 342 (412)
T COG0304 280 RAMRAALADAGLTPEDIDYINA-HGTSTPANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLG 342 (412)
T ss_pred HHHHHHHHHcCCCHhHCCEEeC-CCccCCCccHHHHHHHHHHhcccccCceeeecccccccChh
Confidence 7899999999999999999973 3444322322222222332221 23455566677788654
No 261
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=22.79 E-value=46 Score=31.76 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAv 131 (241)
...+++++|+++|++++|||.|=+
T Consensus 291 ~~~a~~~al~~agl~~~did~~ei 314 (391)
T PRK07661 291 PIAAIPKALKLAGLELSDIGLFEL 314 (391)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEe
Confidence 346999999999999999999985
No 262
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=22.43 E-value=47 Score=31.91 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.2
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAvt 132 (241)
..+++++|+++|++++|||.+=+.
T Consensus 293 ~~a~~~Al~~AGl~p~DID~~ei~ 316 (392)
T PRK06633 293 VPASQKALSKAGWSVNDLEVIEVN 316 (392)
T ss_pred HHHHHHHHHHcCCCHHHcCeeehh
Confidence 458999999999999999999853
No 263
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=22.37 E-value=39 Score=32.31 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAv 131 (241)
..+++++|+++|++++|||.+=+
T Consensus 293 ~~a~~~al~~agl~~~Did~~ei 315 (392)
T PRK07108 293 VFAVPKLLKQAGLKVDDIDLWEL 315 (392)
T ss_pred HHHHHHHHHHcCCCHHHcCchHh
Confidence 36899999999999999999853
No 264
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=22.26 E-value=1.2e+02 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCeEEeccchhhhh
Q psy16095 145 AIVARTLALLWNKPIVGVNHCIGHIE 170 (241)
Q Consensus 145 ~s~Ak~LA~~l~iPli~V~HleaHa~ 170 (241)
+-+||.+|..+++|++.|++.-+|-.
T Consensus 97 iD~aK~~A~~~~~pfIsvPT~AS~Da 122 (360)
T COG0371 97 IDTAKAAAYRLGLPFISVPTIASTDA 122 (360)
T ss_pred HHHHHHHHHHcCCCEEEecCcccccc
Confidence 56899999999999999999988854
No 265
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=22.18 E-value=68 Score=24.68 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEEcC--CCCCChhHHHHHHHHHHHHHhCCCeEEecc
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKG--PGMGGPLTVVAIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt~G--PGs~tgLRVG~s~Ak~LA~~l~iPli~V~H 164 (241)
.+.+...=-+.++++.+ .||+..+ |.+.|+.-+| .|.++++|++.+..
T Consensus 48 ~~~i~~~d~~~i~~~D~------via~l~~~~~d~Gt~~ElG------~A~algkpv~~~~~ 97 (113)
T PF05014_consen 48 AREIFERDLEGIRECDI------VIANLDGFRPDSGTAFELG------YAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHHHHHHHHHHSSE------EEEEECSSS--HHHHHHHH------HHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCE------EEEECCCCCCCCcHHHHHH------HHHHCCCEEEEEEc
Confidence 33344433345555443 3444445 5555666665 55668999998863
No 266
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=22.17 E-value=3.2e+02 Score=26.12 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=39.7
Q ss_pred HHHHHHHhhCCCCcCCcCEEEEEcC----C--C-C---------------C--ChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 110 EVLKEALDQAKVSRDDIDVICYTKG----P--G-M---------------G--GPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 110 ~~I~~~L~~agi~~~DID~IAvt~G----P--G-s---------------~--tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
.++.+.+++.|+.++++|+|+- +| | | - . -.--+|.-.|+.+|..+++|.+-|+
T Consensus 53 ~~i~~~i~e~g~~i~~~dAvvg-RGGLL~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~gvPayIVD 129 (358)
T COG3426 53 DAILEFIDEQGYNISKFDAVVG-RGGLLRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALGVPAYIVD 129 (358)
T ss_pred HHHHHHHHHhCCCcCCccceee-cCccccccCCceeEeCHHHHHHHHcCCCCcchhhhhHHHHHHHhhhcCCCeeeeC
Confidence 4788899999999999999973 33 1 1 0 0 1123678889999999999988775
No 267
>KOG1794|consensus
Probab=22.10 E-value=5.8e+02 Score=24.39 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhCCCCcCC-cCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDD-IDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~D-ID~IAvt~ 133 (241)
-.+.+..+|++++.++|++.++ |..++++.
T Consensus 45 ~~~rie~~i~~A~~k~g~d~~~~lr~lgL~l 75 (336)
T KOG1794|consen 45 CASRIEDMIREAKEKAGWDKKGPLRSLGLGL 75 (336)
T ss_pred HHHHHHHHHHHHHhhcCCCccCccceeeeec
Confidence 3455778999999999999998 88888754
No 268
>PRK08256 lipid-transfer protein; Provisional
Probab=21.92 E-value=91 Score=29.47 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 105 KSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 105 ~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
.+....+++++|+++|++++|||.+.+.
T Consensus 23 ~~La~~A~~~Al~dAGl~~~dID~~~~g 50 (391)
T PRK08256 23 PDMAAEAGRAALADAGIDYDAVQQAYVG 50 (391)
T ss_pred HHHHHHHHHHHHHHcCCChHHCCeeEEE
Confidence 4555568999999999999999988764
No 269
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=21.88 E-value=73 Score=30.46 Aligned_cols=29 Identities=31% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
...+.+..++.++|+++|++++|||.+.+
T Consensus 24 ~~~~L~~eA~~~Al~DAgl~~~dID~~~~ 52 (388)
T PRK08142 24 SVAQLHAEVAKGALADAGLSLADVDGYFC 52 (388)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 34666777999999999999999999754
No 270
>PRK05790 putative acyltransferase; Provisional
Probab=21.87 E-value=55 Score=30.91 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAv 131 (241)
..+++++|+++|++++|||.+=+
T Consensus 294 ~~a~~~a~~~Agi~~~did~~e~ 316 (393)
T PRK05790 294 VPAIRKALEKAGWSLADLDLIEI 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEe
Confidence 35899999999999999999975
No 271
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=21.83 E-value=53 Score=31.37 Aligned_cols=24 Identities=4% Similarity=0.217 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAv 131 (241)
...+++++|+++|++++|||.+=+
T Consensus 297 ~~~a~~~al~~agl~~~Did~~ei 320 (397)
T PRK06954 297 PVGAIRKLFEKNGWRAAEVDLFEI 320 (397)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEeh
Confidence 346999999999999999999953
No 272
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.80 E-value=3.3e+02 Score=24.53 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEE
Q psy16095 106 SKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVG 161 (241)
Q Consensus 106 e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~ 161 (241)
++|...++. |++ -.+|.|.||.+||..+.. -.+.+|+.|...+++|.++
T Consensus 15 ~~l~~~~~~-l~~-----~~pd~isvT~~~~~~~~~-~t~~~a~~l~~~~g~~~i~ 63 (272)
T TIGR00676 15 ENLWETVDR-LSP-----LDPDFVSVTYGAGGSTRD-RTVRIVRRIKKETGIPTVP 63 (272)
T ss_pred HHHHHHHHH-Hhc-----CCCCEEEeccCCCCCcHH-HHHHHHHHHHHhcCCCeeE
Confidence 455555544 332 358999999999965432 2456677788778888643
No 273
>PRK09051 beta-ketothiolase; Provisional
Probab=21.75 E-value=50 Score=31.57 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
...+++++|+++|++++|||.|=+.
T Consensus 294 ~~~a~~~al~~agi~~~did~~ei~ 318 (394)
T PRK09051 294 PVPATQKALERAGLTVADLDVIEAN 318 (394)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec
Confidence 3468999999999999999999874
No 274
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=21.70 E-value=56 Score=31.08 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEc
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTK 133 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~ 133 (241)
...+++++|+++|++++|||.+=+..
T Consensus 294 ~~~a~~~al~~Agl~~~dId~~e~~d 319 (394)
T PRK06445 294 PVPASKKALEKAGLSVKDIDLWEINE 319 (394)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEecc
Confidence 44599999999999999999998754
No 275
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=21.48 E-value=1.8e+02 Score=21.63 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=33.2
Q ss_pred CCCCeEEeeeeeec--ccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 74 GKKNTILSNCRRTY--VTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 74 ~~~~~il~~~~~s~--~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
++++++|..++... ..-++|++-+.+... ..+.+++.++.|++....+.+++
T Consensus 11 ~~~~~vLl~~r~~~~~w~lPgG~v~~~E~~~------~aa~REl~EE~Gl~~~~~~~~~~ 64 (129)
T cd04676 11 DDEGRVLLIRRSDNGLWALPGGAVEPGESPA------DTAVREVREETGLDVEVTGLVGI 64 (129)
T ss_pred CCCCeEEEEEecCCCcEECCeeccCCCCCHH------HHHHHHHHHHhCceeEeeEEEEE
Confidence 45577876665432 235667777765432 35788899999998766655543
No 276
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=21.39 E-value=1.3e+02 Score=22.97 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCeEEeeeeee--cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 76 KNTILSNCRRT--YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 76 ~~~il~~~~~s--~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
+++||...+.. ...-++|++-+.+.... .+++++.++.|++......+++.
T Consensus 11 ~~~vLl~~~~~~~~w~lPgG~ve~gEs~~~------aa~RE~~EEtGl~~~~~~~~~~~ 63 (126)
T cd04688 11 NGKLLVQKNPDETFYRPPGGGIEFGESSEE------ALIREFKEELGLKIEITRLLGVV 63 (126)
T ss_pred CCEEEEEEeCCCCeEECCCccccCCCCHHH------HHHHHHHHHhCCceecceeeEEE
Confidence 45676655432 13577888888655432 58899999999987776666653
No 277
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=21.31 E-value=5.3e+02 Score=22.14 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=48.8
Q ss_pred CCCCchhhccccchhhhhhhhhhhccccCCCcCCCCCeEEeeeeeecccCCCCcccchhhhHHHHHHHHHHHHHHHhhCC
Q psy16095 41 GFLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAK 120 (241)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~s~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~ag 120 (241)
|+...+.|.-= -|=.||.++|--++.........+.+-.+.... +..|+.. +.+...+.+.+...+
T Consensus 18 ~~~~~~ia~el--~vs~~t~~~l~~~~~~~~~~~~~~~~yid~~~~-------~~~~~~l-----~~i~~~la~~i~~~~ 83 (200)
T PRK02277 18 GLSTGEIADEL--NVSRETATWLLTRAKKLEKAPAPKDIHIDWSSI-------GSSSSRL-----RYIASAMADMLEKED 83 (200)
T ss_pred CCChhhhhhhh--cchHHHHHHHHhcccCCCCCCCCCCEEEEChhh-------ccCHHHH-----HHHHHHHHHHHHhcC
Confidence 45555555411 266777788776655443332222222222211 2223222 223333333333222
Q ss_pred CCcCCcCEEEE-EcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 121 VSRDDIDVICY-TKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 121 i~~~DID~IAv-t~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
.++|.|.- ..| |+-+|..+|..+++|+..+.
T Consensus 84 ---~~~D~Ivgi~~g---------G~~~A~~lA~~L~~~~~~~~ 115 (200)
T PRK02277 84 ---EEVDVVVGIAKS---------GVPLATLVADELGKDLAIYH 115 (200)
T ss_pred ---CCCCEEEeeccC---------CHHHHHHHHHHhCCCcEEEe
Confidence 46787752 222 67788888889999986553
No 278
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=21.27 E-value=53 Score=30.97 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEEcCCCC
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGM 137 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt~GPGs 137 (241)
...+++++|+++|++++|||.|=+ .++.+
T Consensus 260 ~~~a~~~al~~aGi~~~did~~e~-~d~ft 288 (389)
T PRK06064 260 AVVAAEKAYKMAGIEPKDIDVAEV-HDCFT 288 (389)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEe-cCCCc
Confidence 346899999999999999999965 45443
No 279
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=21.04 E-value=1.9e+02 Score=26.60 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=26.6
Q ss_pred CcCEEEEEcCCC--CCC-hhHHHHHHHHHHHHHhCCCeEE
Q psy16095 125 DIDVICYTKGPG--MGG-PLTVVAIVARTLALLWNKPIVG 161 (241)
Q Consensus 125 DID~IAvt~GPG--s~t-gLRVG~s~Ak~LA~~l~iPli~ 161 (241)
.+|.+|++.||- .+. .-.+++...+.+....++|++.
T Consensus 166 g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~ 205 (281)
T PRK06806 166 DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVL 205 (281)
T ss_pred CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEE
Confidence 379999988884 443 2446777778888777888765
No 280
>PRK13411 molecular chaperone DnaK; Provisional
Probab=21.00 E-value=1.5e+02 Score=30.36 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhH
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLT 142 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLR 142 (241)
.-.+.+...++++|++++++.+|||.|-.+-|-...+.++
T Consensus 305 ~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~ 344 (653)
T PRK13411 305 DLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQ 344 (653)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHH
Confidence 3445566788999999999999999999887755445443
No 281
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.
Probab=20.94 E-value=2.1e+02 Score=28.22 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCC
Q psy16095 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPG 136 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPG 136 (241)
-......+.+.+|+++++++++||.|.|..--+
T Consensus 50 ~~tma~~AA~~lL~~a~id~~~Id~Liv~TeS~ 82 (454)
T TIGR01833 50 INSLCLTVVSKLMERYNIDYNQIGRLEVGTETI 82 (454)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 334445689999999999999999999955443
No 282
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=20.88 E-value=2.5e+02 Score=23.89 Aligned_cols=32 Identities=31% Similarity=0.293 Sum_probs=23.7
Q ss_pred CCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 124 DDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 124 ~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
.++|.|....- -|+.+|-.+|..+|+|++.+-
T Consensus 52 ~~id~Iv~iea--------~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 52 DGIDKIVTIEA--------RGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred cCCCEEEEEcc--------ccchhHHHHHHHhCCCEEEEE
Confidence 46999886332 256677788999999999864
No 283
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=20.84 E-value=52 Score=31.34 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.1
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAvt 132 (241)
..+++++|+++|++++|||.+=+.
T Consensus 272 ~~A~~~al~~Agi~~~DID~~Ei~ 295 (393)
T cd00826 272 IEAARKALEKAGLGIGDLDLIEAH 295 (393)
T ss_pred HHHHHHHHHHcCCCHHHcCeeehh
Confidence 368999999999999999988764
No 284
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=20.77 E-value=1e+02 Score=30.54 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhCCCC--cCCcCEEEEEc
Q psy16095 104 HKSKVLEVLKEALDQAKVS--RDDIDVICYTK 133 (241)
Q Consensus 104 H~e~L~~~I~~~L~~agi~--~~DID~IAvt~ 133 (241)
-.+.+..+++++|+++|++ ++|||.|.+..
T Consensus 27 ~~~L~~eA~~~Al~DAGl~~~~~dID~v~v~~ 58 (498)
T PRK08257 27 PVDLMAAAARAAAADAGADAVLEAIDSVAVVN 58 (498)
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHCCEEEEec
Confidence 3556667999999999999 99999998743
No 285
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=20.70 E-value=46 Score=31.38 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=29.9
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhHHH--HHHHHHHHHHhCCCeEEecc
Q psy16095 92 GEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVV--AIVARTLALLWNKPIVGVNH 164 (241)
Q Consensus 92 ~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLRVG--~s~Ak~LA~~l~iPli~V~H 164 (241)
-|||-.+.++- ++.+++- +.+.+|-|-.| + ||-| -.+.+.+...++++++-|+-
T Consensus 29 SGGVDSsv~a~--------L~~~AiG------d~l~cvfVD~G--L---lR~~E~e~V~~~f~~~~~~nl~~VdA 84 (315)
T COG0519 29 SGGVDSSVAAV--------LAHRAIG------DQLTCVFVDHG--L---LRKGEAEQVVEMFREHLGLNLIVVDA 84 (315)
T ss_pred cCCCcHHHHHH--------HHHHHhh------cceEEEEecCC--c---ccCCcHHHHHHHHHhhcCCceEEEch
Confidence 47887765543 2333332 45666666554 2 2322 23446667778888888763
No 286
>PLN02287 3-ketoacyl-CoA thiolase
Probab=20.64 E-value=60 Score=31.83 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAvt 132 (241)
..+++++|+++|++++|||.|=+.
T Consensus 334 ~~A~~~al~~Agl~~~DID~~Ei~ 357 (452)
T PLN02287 334 AVAIPAAVKAAGLELDDIDLFEIN 357 (452)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEec
Confidence 468999999999999999999654
No 287
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=20.64 E-value=1.6e+02 Score=25.70 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCcCEEEEEcCCCCCChhHHHHHHHHHHHHHhCCCeEEec
Q psy16095 124 DDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163 (241)
Q Consensus 124 ~DID~IAvt~GPGs~tgLRVG~s~Ak~LA~~l~iPli~V~ 163 (241)
++.|+|.++-||++.--.+.-+...+. +...++|+++|-
T Consensus 45 ~~~dgliisGGp~~~~~~~~~~~~i~~-~~~~~~PiLGIC 83 (214)
T PRK07765 45 AQFDGVLLSPGPGTPERAGASIDMVRA-CAAAGTPLLGVC 83 (214)
T ss_pred cCCCEEEECCCCCChhhcchHHHHHHH-HHhCCCCEEEEc
Confidence 579999999999875333333333333 234589999986
No 288
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=20.53 E-value=2.1e+02 Score=21.47 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=32.3
Q ss_pred CeEEeeeeee-----cccCCCCcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 77 NTILSNCRRT-----YVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 77 ~~il~~~~~s-----~~~~~~gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
+++|.-.+.. +..-++|+|-+-+... ..+++++.++.|++...+..+++
T Consensus 11 ~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~------~aa~RE~~EEtGl~~~~~~~~~~ 64 (128)
T cd04684 11 GKLLLIQKNGGPYEGRWDLPGGGIEPGESPE------EALHREVLEETGLTVEIGRRLGS 64 (128)
T ss_pred CEEEEEEccCCCCCCeEECCCcccCCCCCHH------HHHHHHHHHHhCcEeecceeeeE
Confidence 5666555443 2345677777754322 25899999999998777666664
No 289
>CHL00094 dnaK heat shock protein 70
Probab=20.42 E-value=1.8e+02 Score=29.56 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChhH
Q psy16095 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLT 142 (241)
Q Consensus 103 ~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgLR 142 (241)
.-.+.+...|+++|++++++..|||.|-.+-|--..+.++
T Consensus 306 ~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~ 345 (621)
T CHL00094 306 DLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQ 345 (621)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHH
Confidence 3445555678899999999999999999887754445443
No 290
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=20.42 E-value=45 Score=32.09 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.8
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAv 131 (241)
..+++++|+++|++++|||.|=+
T Consensus 299 ~~A~~~al~~AGl~~~DID~iei 321 (400)
T PRK13359 299 APATQKLLARLGMTLDQFDVIEL 321 (400)
T ss_pred HHHHHHHHHHhCCCHHHcCcCcc
Confidence 46899999999999999999884
No 291
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=20.41 E-value=83 Score=25.20 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=29.7
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEE
Q psy16095 93 EGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICY 131 (241)
Q Consensus 93 gGvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAv 131 (241)
|+++.....+.+.++...-|+.+|+++|.+++||=.+-+
T Consensus 40 g~~~~~~d~~~Q~~~~l~ni~~iL~~aG~~~~dvv~~~i 78 (127)
T TIGR03610 40 NNVVHVGDAAAQTRHVLETIKSVIETAGGTMDDVTFNHI 78 (127)
T ss_pred CCeeCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 455433456678888888999999999999999766544
No 292
>CHL00094 dnaK heat shock protein 70
Probab=20.19 E-value=9.1e+02 Score=24.44 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=56.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCCh-hHHHHHHHHHHHHHhCCCeEE-eccchhhhhh
Q psy16095 94 GFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGP-LTVVAIVARTLALLWNKPIVG-VNHCIGHIEM 171 (241)
Q Consensus 94 GvvPe~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tg-LRVG~s~Ak~LA~~l~iPli~-V~HleaHa~s 171 (241)
-+.||+.+-.....|....+..+ | ..++.+.+ .=|..|+- -|-.+.-| |...|..++. |+.-.|-+++
T Consensus 109 ~~s~eei~a~iL~~l~~~ae~~l---g---~~v~~~VI-tVPa~f~~~qR~a~~~A---a~~AGl~v~~li~EptAAAla 178 (621)
T CHL00094 109 DFSPEEISAQVLRKLVEDASKYL---G---ETVTQAVI-TVPAYFNDSQRQATKDA---GKIAGLEVLRIINEPTAASLA 178 (621)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHh---C---CCCCeEEE-EECCCCCHHHHHHHHHH---HHHcCCceEEEeccHHHHHHH
Confidence 34677766666555544443322 3 34566555 45887764 34333333 3344665544 3433332221
Q ss_pred cccccCCCCcEEEEEe--CCceEEEE--EeCCcEEEEeeeccChhh-hHHH
Q psy16095 172 GRNVTKCENPTVLYVS--GGNTQVIA--YSRQRYRIFGETIDIAVG-NCLD 217 (241)
Q Consensus 172 a~~~~~~~~Pl~L~VS--GGhT~l~~--~~~~~~~ilg~t~DdalG-e~~D 217 (241)
+.........+|++| ||++.+-. ...+.+++++..-|..+| +-||
T Consensus 179 -y~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D 228 (621)
T CHL00094 179 -YGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFD 228 (621)
T ss_pred -hccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHH
Confidence 211111223456666 56655544 466788888766665554 4444
No 293
>PLN02577 hydroxymethylglutaryl-CoA synthase
Probab=20.14 E-value=1.6e+02 Score=29.07 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCCCCcCCcCEEEEEcCC
Q psy16095 109 LEVLKEALDQAKVSRDDIDVICYTKGP 135 (241)
Q Consensus 109 ~~~I~~~L~~agi~~~DID~IAvt~GP 135 (241)
..+.+.+|+++|+++++||.|.|...-
T Consensus 58 ~~AA~~aL~~agid~~~IdllivaTeT 84 (459)
T PLN02577 58 LTVVKSLLEKYNIDPKQIGRLEVGSET 84 (459)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEEcCC
Confidence 348899999999999999999995543
No 294
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=20.10 E-value=72 Score=30.13 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhCCCCcCCcCEEEEE
Q psy16095 108 VLEVLKEALDQAKVSRDDIDVICYT 132 (241)
Q Consensus 108 L~~~I~~~L~~agi~~~DID~IAvt 132 (241)
...+++++++++|++++|||.+=+.
T Consensus 262 ~~~a~~~a~~~agl~~~did~~e~~ 286 (389)
T PRK07516 262 PRRAWQRALAQAGVTLDDLSFVETH 286 (389)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 3458999999999999999999764
No 295
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=20.03 E-value=1.9e+02 Score=29.16 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhCCCCcCCcCEEEEEcCCCCCChh
Q psy16095 98 RETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPL 141 (241)
Q Consensus 98 e~A~r~H~e~L~~~I~~~L~~agi~~~DID~IAvt~GPGs~tgL 141 (241)
|.......+.+...++++|++++++..|||.|-.+-|-...+.+
T Consensus 285 e~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V 328 (599)
T TIGR01991 285 EALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLV 328 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHH
Confidence 34445566677788999999999999999999987664433443
Done!