RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16095
(241 letters)
>gnl|CDD|240369 PTZ00340, PTZ00340, O-sialoglycoprotein endopeptidase-like protein;
Provisional.
Length = 345
Score = 355 bits (914), Expect = e-124
Identities = 139/240 (57%), Positives = 160/240 (66%), Gaps = 54/240 (22%)
Query: 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFD 61
+A+G EGSANKLG+GIV
Sbjct: 1 FLALGIEGSANKLGVGIV------------------------------------------ 18
Query: 62 YLSQNQRGKGSIGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKV 121
G ILSN R TY+TPPG GFLPRETAQHH+ +L ++KEAL++AK+
Sbjct: 19 ------TSDG------EILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKI 66
Query: 122 SRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENP 181
+ DI +ICYTKGPGMG PL+V A+VARTL+LLW KP+VGVNHC+ HIEMGR VT ENP
Sbjct: 67 TPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRLVTGAENP 126
Query: 182 TVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYNIEQMAKK 241
VLYVSGGNTQVIAYS RYRIFGETIDIAVGNCLDRFAR+L LSNDP+PGYNIEQ+AKK
Sbjct: 127 VVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARLLNLSNDPAPGYNIEQLAKK 186
>gnl|CDD|234329 TIGR03722, arch_KAE1, universal archaeal protein Kae1. This family
represents the archaeal protein Kae1. Its partner Bud32
is fused with it in about half of the known archaeal
genomes. The pair, which appears universal in the
archaea, corresponds to EKC/KEOPS complex in eukaryotes.
A recent characterization of the member from Pyrococcus
abyssi, as an iron-binding, atypical DNA-binding protein
with an apurinic lyase activity, challenges the common
annotation of close homologs as O-sialoglycoprotein
endopeptidase. The latter annotation is based on a
characterized protein from the bacterium Pasteurella
haemolytica [DNA metabolism, DNA replication,
recombination, and repair].
Length = 322
Score = 225 bits (575), Expect = 3e-73
Identities = 88/164 (53%), Positives = 115/164 (70%), Gaps = 5/164 (3%)
Query: 79 ILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMG 138
IL+N TYV G G PRE A+HH +++KEAL++A +S +DID + +++GPG+G
Sbjct: 21 ILANVSDTYVPEKG-GIHPREAAEHHAEVAPKLIKEALEEAGISIEDIDAVAFSQGPGLG 79
Query: 139 GPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVIAYSR 198
L V A AR LAL NKP+VGVNHC+ HIE+GR T ++P VLYVSGGNTQVIAY
Sbjct: 80 PCLRVGATAARALALKLNKPLVGVNHCVAHIEIGRLTTGAKDPVVLYVSGGNTQVIAYRN 139
Query: 199 QRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPG-YNIEQMAKK 241
RYR+FGET+DI +GN LD+FAR + L PG IE++A+K
Sbjct: 140 GRYRVFGETLDIGLGNALDKFAREVGL---GHPGGPKIEELAEK 180
>gnl|CDD|223607 COG0533, QRI7, Metal-dependent proteases with possible chaperone
activity [Posttranslational modification, protein
turnover, chaperones].
Length = 342
Score = 221 bits (566), Expect = 1e-71
Identities = 72/174 (41%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 72 SIGKKNTILSNCRRTYV--TPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVI 129
+I + IL+N + + G +P ++HH + +++EAL +A VS +DID I
Sbjct: 16 AIVDEEKILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAI 75
Query: 130 CYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCE-NPTVLYVSG 188
T GPG+GG L V A A+ LAL NKP++ VNH GHIE R T P L VSG
Sbjct: 76 AVTAGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLETGLAFPPVALLVSG 135
Query: 189 GNTQVIAY-SRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYNIEQMAKK 241
G+TQ+IA RY + GET+D A G D+ AR+L L P IE++AKK
Sbjct: 136 GHTQLIAVRGIGRYEVLGETLDDAAGEAFDKVARLLGLGYPGGP--AIEKLAKK 187
>gnl|CDD|184878 PRK14878, PRK14878, UGMP family protein; Provisional.
Length = 323
Score = 220 bits (562), Expect = 3e-71
Identities = 90/169 (53%), Positives = 119/169 (70%), Gaps = 3/169 (1%)
Query: 73 IGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYT 132
I K++ +L+N R TYV G G PRE AQHH E+L++AL++A +S +DID + +
Sbjct: 14 IVKEDKVLANVRDTYVPEKG-GIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVS 72
Query: 133 KGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQ 192
+GPG+G L V A AR LAL +NKP+V VNHCI HIE+GR T ++P VLYVSGGNTQ
Sbjct: 73 QGPGLGPALRVGATAARALALKYNKPLVPVNHCIAHIEIGRLTTGAKDPVVLYVSGGNTQ 132
Query: 193 VIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYNIEQMAKK 241
V+A+ RYR+FGET+DIA+GN LD FAR + L+ P G IE+ A+K
Sbjct: 133 VLAFRGGRYRVFGETLDIAIGNALDTFAREVGLA--PPGGPAIEKCAEK 179
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 219 bits (560), Expect = 1e-68
Identities = 85/174 (48%), Positives = 115/174 (66%), Gaps = 5/174 (2%)
Query: 69 GKGSIGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDV 128
G + +L N Y PP G PRE A+HH + +V+KEAL++A + +DID+
Sbjct: 14 SAGIVDSDGDVLFNESDPYK-PPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDL 72
Query: 129 ICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSG 188
+ +++GPG+G L VVA AR LAL + P++GVNHC+ H+E+GR T E+P LYVSG
Sbjct: 73 VAFSQGPGLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIGRLTTGAEDPVTLYVSG 132
Query: 189 GNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP-GYNIEQMAKK 241
GNTQV+AY RYR+FGET+DI VGN LD+FAR + L P P G IE++AK
Sbjct: 133 GNTQVLAYLNGRYRVFGETLDIGVGNALDKFARHVGL---PHPGGPKIEKLAKD 183
>gnl|CDD|216132 pfam00814, Peptidase_M22, Glycoprotease family. The Peptidase M22
proteins are part of the HSP70-actin superfamily. The
region represented here is an insert into the fold and
is not found in the rest of the family (beyond the
Peptidase M22 family). Included in this family are the
Rhizobial NodU proteins and the HypF regulator. This
region also contains the histidine dyad believed to
coordinate the metal ion and hence provide catalytic
activity. Interestingly the histidines are not well
conserved, and there is a lack of experimental evidence
to support peptidase activity as a general property of
this family. There also appear to be instances of this
domain outside of the HSP70-actin superfamily.
Length = 271
Score = 196 bits (499), Expect = 2e-62
Identities = 70/167 (41%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 78 TILSNC---RRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134
IL+N ++ P G G +P ++HH ++L +++EAL +A +S +D+D I T G
Sbjct: 1 EILANVILSQKDLHAPYG-GVVPELASRHHSERLLPLIEEALAEAGLSLEDLDAIAVTAG 59
Query: 135 PGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVI 194
PG+ L V A A+ LAL +KP+VGVNH H R T E P VL VSGG+TQV
Sbjct: 60 PGLFTGLRVGATFAKGLALALDKPLVGVNHLEAHALAARLETGLEFPVVLLVSGGHTQVY 119
Query: 195 AYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYNIEQMAKK 241
A RY I GET+D A G D+ AR+L L P IE++AK+
Sbjct: 120 AAKDGRYEILGETLDDAAGEAFDKVARLLGLPYPGGP--AIEKLAKE 164
>gnl|CDD|129429 TIGR00329, gcp_kae1, metallohydrolase, glycoprotease/Kae1 family.
This subfamily includes the well-studied secreted
O-sialoglycoprotein endopeptidase (glycoprotease, EC
3.4.24.57) of Pasteurella haemolytica, a pathogen. A
member from Riemerella anatipestifer, associated with
cohemolysin activity, likewise is exported without
benefit of a classical signal peptide and shows
glycoprotease activity on the test substrate
glycophorin. However, archaeal members of this subfamily
show unrelated activities as demonstrated in Pyrococcus
abyssi: DNA binding, iron binding, apurinic endonuclease
activity, genomic association with a kinase domain, and
no glycoprotease activity. This family thus pulls
together a set of proteins as a homology group that
appears to be near-universal in life, yet heterogeneous
in assayed function between bacteria and archaea
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 305
Score = 173 bits (440), Expect = 4e-53
Identities = 78/241 (32%), Positives = 112/241 (46%), Gaps = 59/241 (24%)
Query: 5 IGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFDYLS 64
+G E S + G+ IVD + N +L+N + + H
Sbjct: 1 LGIETSCDDTGVAIVDEEGN-VLANIKISQ-------------IPLHAKY---------- 36
Query: 65 QNQRGKGSIGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRD 124
G +P E ++HH + +L+ AL ++ V +
Sbjct: 37 ----------------------------GGVVPEEASRHHAENIPPLLERALIESNVDKS 68
Query: 125 DIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTK--CENPT 182
+ID+I YT+GPG+GG L V A AR+LAL +KP++GVNH +GHI R T
Sbjct: 69 EIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPLIGVNHLLGHIYAPRLDTNILQFPFV 128
Query: 183 VLYVSGGNTQVIAY-SRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP-GYNIEQMAK 240
L VSGG+TQ+IA Y + GET+D AVG D+ AR+L L P G IE++AK
Sbjct: 129 SLLVSGGHTQIIAVKGIGDYEVLGETLDDAVGEAFDKVARLLGL---GYPGGPKIEELAK 185
Query: 241 K 241
K
Sbjct: 186 K 186
>gnl|CDD|234330 TIGR03723, T6A_YgjD, tRNA threonylcarbamoyl adenosine modification
protein YgjD. This model represents bacterial members
of a protein family that is widely distributed. In a few
pathogenic species, the protein is exported in a way
that may represent an exceptional secondary function.
This model plus companion (archaeal) model TIGR03722
together span the prokaryotic member sequences of
TIGR00329, a protein family that appears universal in
life, and whose broad function is unknown. A member of
TIGR03722 has been characterized as a DNA-binding
protein with apurinic endopeptidase activity. In
contrast, the rare characterized members of the present
family show O-sialoglycoprotein endopeptidase (EC.
3.4.24.57) activity after export. These include
glycoprotease (gcp) from Pasteurella haemolytica A1 and
a cohemolysin from Riemerella anatipestifer
(GB|AAG39646.1). The member from Staphylococcus aureus
is essential and is related to cell wall dynamics and
the modulation of autolysis, but members are also found
in the Mycoplasmas (which lack a cell wall). A
reasonable hypothesis is that virulence-related
activities after export are secondary to a bacterial
domain-wide unknown function [Protein synthesis, tRNA
and rRNA base modification].
Length = 314
Score = 122 bits (308), Expect = 2e-33
Identities = 56/147 (38%), Positives = 82/147 (55%), Gaps = 11/147 (7%)
Query: 101 AQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIV 160
++ H + +++EAL +A ++ DID I T GPG+ G L V A+ LAL NKP++
Sbjct: 46 SRAHLENIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALALNKPLI 105
Query: 161 GVNHCIGHI---EMGRNVTKCENPTV-LYVSGGNTQ-VIAYSRQRYRIFGETIDIAVGNC 215
GVNH GH+ + E P + L VSGG+TQ V+ Y + GET+D A G
Sbjct: 106 GVNHLEGHLLAPFLEDK--PLEFPFLALLVSGGHTQLVLVKGVGDYELLGETLDDAAGEA 163
Query: 216 LDRFARVLKLSNDPSP-GYNIEQMAKK 241
D+ AR+L L P G I+++AK+
Sbjct: 164 FDKVARLLGL---GYPGGPAIDKLAKE 187
>gnl|CDD|236585 PRK09604, PRK09604, UGMP family protein; Validated.
Length = 332
Score = 119 bits (300), Expect = 6e-32
Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 12/145 (8%)
Query: 103 HHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGV 162
H ++ +++EAL +A ++ +DID I T GPG+ G L V A+ LAL NKP++GV
Sbjct: 50 AHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPLIGV 109
Query: 163 NHCIGHIEMGRNVTKCENPTV-LYVSGGNTQ-VIAYSRQRYRIFGETIDIAVGNCLDRFA 220
NH GH+ + E P + L VSGG+TQ V+ Y + GET+D A G D+ A
Sbjct: 110 NHLEGHLLAPFLEEEPEFPFLALLVSGGHTQLVLVKGIGDYELLGETLDDAAGEAFDKVA 169
Query: 221 RVLKLSNDPSPGY----NIEQMAKK 241
++L L GY I+++AK+
Sbjct: 170 KLLGL------GYPGGPAIDKLAKQ 188
>gnl|CDD|224135 COG1214, COG1214, Inactive homolog of metal-dependent proteases,
putative molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 52.4 bits (126), Expect = 2e-08
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPG--MGGPLTVVAIVARTLALLWNKPIVG 161
H +++ ++ E L +A +S D+D I KGPG G L + A+ LAL N P+VG
Sbjct: 37 HAERLMPMIDELLKEAGLSLQDLDAIAVAKGPGSFTG--LRIGVAFAKGLALALNIPLVG 94
Query: 162 VN 163
V+
Sbjct: 95 VS 96
>gnl|CDD|234332 TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification
protein YeaZ. This family describes a protein family,
YeaZ, now associated with the threonylcarbamoyl
adenosine (t6A) tRNA modification. Members of this
family may occur as fusions with ygjD (previously gcp)
or the ribosomal protein N-acetyltransferase rimI, and
is frequently encoded next to rimI [Protein synthesis,
tRNA and rRNA base modification].
Length = 202
Score = 51.5 bits (124), Expect = 4e-08
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 96 LPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLT---VVAIVARTLA 152
R ++ +L +++E L +A +S D+D I GPG T + A+ LA
Sbjct: 29 AGRNHSEI----LLPMIEELLAEAGLSLQDLDAIAVGVGPG---SFTGLRIGLATAKGLA 81
Query: 153 LLWNKPIVGVN 163
L P+VGV+
Sbjct: 82 LALGIPLVGVS 92
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 35.2 bits (82), Expect = 0.024
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 98 RETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134
++ + EAL QA VS D ID + T G
Sbjct: 341 EGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGG 377
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 34.2 bits (79), Expect = 0.050
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163
E + ALD A + DID + G A++A L LL KP V
Sbjct: 20 AAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLL-GKPATRVE 74
Score = 28.4 bits (64), Expect = 3.8
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 113 KEALDQAKVSRDDIDVI----CYT 132
+ A A ++ DDIDV C+T
Sbjct: 258 RRAYKMAGITPDDIDVAELYDCFT 281
>gnl|CDD|201201 pfam00391, PEP-utilizers, PEP-utilising enzyme, mobile domain.
This domain is a "swivelling" beta/beta/alpha domain
which is thought to be mobile in all proteins known to
contain it.
Length = 73
Score = 30.2 bits (69), Expect = 0.18
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 138 GGPLTVVAIVARTLALLWNKP-IVGVNHCIGHIEMGRNVT 176
GGP + AI+AR L P +VGV ++ G VT
Sbjct: 33 GGPTSHAAILAREL----GIPAVVGVGDATKALKDGDEVT 68
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 31.8 bits (73), Expect = 0.23
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 57 EEKFDYLSQNQRGKGSIGKKNTILSNCRRTYVTPPGEGFLP---RETAQHHKSKVLEVLK 113
E+ L + GS G + T G G L RE + + + ++
Sbjct: 171 EDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIE 230
Query: 114 EALDQAKVSRDDIDV 128
E L++A ++ +DID
Sbjct: 231 EVLEKAGLTPEDIDW 245
Score = 29.1 bits (66), Expect = 2.2
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 113 KEALDQAKVSRDDID-VICYT 132
++AL+ A +S DDID +I T
Sbjct: 61 RKALEDAGISPDDIDLIIVAT 81
>gnl|CDD|233113 TIGR00747, fabH, 3-oxoacyl-(acyl-carrier-protein) synthase III.
FabH in general initiate elongation in type II fatty
acid synthase systems found in bacteria and plants. The
two members of this subfamily from Bacillus subtilis
differ from each other, and from FabH from E. coli, in
acyl group specificity. Active site residues include
Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is
the site of acyl group attachment [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 318
Score = 31.2 bits (71), Expect = 0.48
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 71 GSIGKKNTILSNCRRTYVTPPGEGFLP---RETAQHHKSKVLEVLKEALDQAKVSRDDID 127
G+ G + L T F+ E +H K+ +V++E L+ + +DID
Sbjct: 181 GADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEANGLDPEDID 240
Query: 128 V 128
Sbjct: 241 W 241
>gnl|CDD|238427 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific
polyketide synthases (PKS) and related enzymes, also
called type III PKSs. PKS generate an array of different
products, dependent on the nature of the starter
molecule. They share a common chemical strategy, after
the starter molecule is loaded onto the active site
cysteine, a carboxylative condensation reation extends
the polyketide chain. Plant-specific PKS are dimeric
iterative PKSs, using coenzyme A esters to deliver
substrate to the active site, but they differ in the
choice of starter molecule and the number of
condensation reactions.
Length = 361
Score = 30.7 bits (70), Expect = 0.62
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 70 KGSIGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLE----VLKEALDQAKVSRDD 125
K I + +L TY P E + E + ALD+A + D
Sbjct: 47 KTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIALEEARELAEEAARGALDEAGLRPSD 106
Query: 126 IDVICYT 132
ID +
Sbjct: 107 IDHLVVN 113
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 29.9 bits (67), Expect = 0.79
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 108 VLEVLKEALDQAKVSRDDIDVICYTKGPGM--------GGPLTVVAIVARTLALLWNKPI 159
+ E+LKEAL Q K +ID + T+ G+ P ++ +A L L P+
Sbjct: 47 LRELLKEALRQLK---SEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPV 103
Query: 160 VGVNHCIG-HIEMGRNVTKCENPTVLYVSGGNTQVIAYS--RQRYRIFGE-TIDIAVGNC 215
VN + + G + + V+ + G T + + GE I A+
Sbjct: 104 AVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGAAGELGIAEALAAV 163
Query: 216 LDRF 219
L+
Sbjct: 164 LNLL 167
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 29.7 bits (68), Expect = 1.2
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 111 VLKEALDQAKVSRDDID-VI---CYTKGPGMGGPLTVVAIVARTLALL----WNKPIVGV 162
V+K AL++A V + +D VI G G AR AL P + +
Sbjct: 33 VIKAALERAGVPPEQVDEVIMGQVLQAGAGQ--------NPARQAALKAGLPVEVPALTI 84
Query: 163 N 163
N
Sbjct: 85 N 85
>gnl|CDD|236204 PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated.
Length = 498
Score = 29.1 bits (66), Expect = 2.4
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 13/52 (25%)
Query: 111 VLKEALDQAKVSRDDIDVI----CYTKGPGMGGPLTVVAIVARTLALLWNKP 158
+ AL A + DDID C+ P + V + AR L L + P
Sbjct: 297 AGRRALALAGLGIDDIDAFDLYSCF---P------SAVQVAARELGLDLDDP 339
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like;
Provisional.
Length = 1195
Score = 29.1 bits (65), Expect = 2.7
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMG 138
+ A +H S ++ + A Q + S+D+I++IC T GMG
Sbjct: 706 KAAFYHGS--MDPAQRAFVQKQWSKDEINIICATVAFGMG 743
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 28.3 bits (64), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 110 EVLKEALDQAKVSRDDIDVI 129
E K+AL+ A + DDID+I
Sbjct: 56 EAAKKALEDAGIDADDIDLI 75
>gnl|CDD|236037 PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 372
Score = 28.3 bits (64), Expect = 4.2
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 109 LEVLKEALDQAKVSRDDID-VIC 130
+ ++AL +A + +DID VI
Sbjct: 100 VAAARQALARAGRTAEDIDAVIV 122
>gnl|CDD|151157 pfam10643, Cytochrome-c551, Photosystem P840 reaction-centre
cytochrome c-551. A photosynthetic reaction-centre
complex is found in certain green sulphur bacteria such
as Chlorobium vibrioforme which are anaerobic
photo-auto-trophic organisms. The primary electron donor
is P840, a probable B-Chl a dimer, and the primary
electron acceptor is a B-Chl monomer. Also on the donor
side c-type cytochromes are known to function as
electron donors to photo-oxidized P840. This family is
thus the secondary endogenous donor of the
photosynthetic reaction-centre complex and is a
membrane-bound cytochrome containing a single haem
group.
Length = 213
Score = 27.5 bits (61), Expect = 5.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 140 PLTVVAIVARTLALLWNKP 158
PL++ IVA A LW +P
Sbjct: 83 PLSIFVIVAVMFASLWERP 101
>gnl|CDD|217974 pfam04227, Indigoidine_A, Indigoidine synthase A like protein.
Indigoidine is a blue pigment synthesised by Erwinia
chrysanthemi implicated in pathogenicity and protection
from oxidative stress. IdgA is involved in indigoidine
biosynthesis, but its specific function is unknown. The
recommended name for this protein is now
pseudouridine-5'-phosphate glycosidase.
Length = 293
Score = 27.4 bits (62), Expect = 6.2
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 109 LEVL-KEALDQAKVSRDDIDVICYTKGPGMGGPLTVVA---IVAR 149
LE L + D AKVSR D+ + T G T VA I+A
Sbjct: 67 LERLAQAGKDVAKVSRRDLPYVLATG--KTGA--TTVAATMILAH 107
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 27.5 bits (62), Expect = 6.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 107 KVLEVLKEALDQAKVSRDDIDVI 129
+V E L++AL +A ++++DI +
Sbjct: 313 RVEEPLEKALAEAGLTKEDIHSV 335
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 27.5 bits (62), Expect = 6.6
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVI 129
E + + +K+AL+ A ++ DID +
Sbjct: 314 ELCADLFERAVAPIKKALESAGLTLKDIDSV 344
>gnl|CDD|236164 PRK08142, PRK08142, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 27.4 bits (61), Expect = 7.3
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 98 RETAQHHKSKVLEVLKEALDQAKVSRDDID-VICYTKGPGMGGPLTVV 144
+ AQ H EV K AL A +S D+D C PG+ GP ++V
Sbjct: 23 KSVAQLHA----EVAKGALADAGLSLADVDGYFCAGDAPGL-GPASMV 65
>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase. This enzyme catalyzes
the second step in arabinose catabolism. The most
closely related protein subfamily outside the scope of
this model includes ribitol kinase from E. coli [Energy
metabolism, Sugars].
Length = 536
Score = 27.6 bits (61), Expect = 7.3
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 86 TYVTPPGEGFLPRETAQHHKSKVLEVL----KEALDQAKVSRDDI 126
P LP + A H + +EVL L + V D+
Sbjct: 39 GQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPADV 83
>gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains.
Length = 119
Score = 26.4 bits (59), Expect = 8.0
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 110 EVLKEALDQAKVSRDDIDVI 129
++ AL A + +D+D +
Sbjct: 29 RAIRAALADAGLDPEDVDYV 48
>gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional.
Length = 548
Score = 27.5 bits (62), Expect = 8.3
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 96 LPRETAQHHKSKVLEVL----KEALDQAKVSRDDIDVIC 130
LP A H +E L L +A V + I
Sbjct: 46 LPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVVGIG 84
>gnl|CDD|234618 PRK00078, PRK00078, Maf-like protein; Reviewed.
Length = 192
Score = 27.0 bits (60), Expect = 8.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 15 GIGIVDTKKNTILSNCRRTYVT 36
GI I+DTK N I+ + T V
Sbjct: 107 GIAILDTKSNKIIKDFVCTEVK 128
>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial ribulokinases (RBK) which catalyze
the MgATP-dependent phosphorylation of L(or D)-ribulose
to produce L(or D)-ribulose 5-phosphate and ADP. RBK
also phosphorylates a variety of other sugar substrates
including ribitol and arabitol. The reason why L-RBK can
phosphorylate so many different substrates is not yet
clear. The presence of Mg2+ is required for catalytic
activity. This group belongs to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 498
Score = 27.2 bits (61), Expect = 8.6
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 96 LPRETAQHHKSKVLEVL----KEALDQAKVSRDDI 126
LP A H + +E L E L +A V DD+
Sbjct: 45 LPPNQALQHPADYIEGLETAIPEVLKEAGVDPDDV 79
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 27.1 bits (61), Expect = 9.3
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNH 164
+++LE+++ ALDQA+V DVI T GG I A L PIVG +
Sbjct: 382 LARILELVQLALDQAQVKP---DVIYLT-----GGSARSPLIRAALAQQLPGIPIVGGDD 433
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 26.9 bits (60), Expect = 9.6
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 14/73 (19%)
Query: 109 LEVLKEALDQAKVSRDDIDVI----CYTK-GPGMGG-PLTVVAIVARTLALLWNKPIVGV 162
+E EAL A + DID Y + G G G PL +R L L N P+ V
Sbjct: 32 VEAFLEALADAGIEPKDIDAAWFGTHYDEIGSGKSGTPL------SRALRLP-NIPVTRV 84
Query: 163 -NHCIGHIEMGRN 174
N C E R
Sbjct: 85 ENFCATGSEAFRG 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.406
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,293,385
Number of extensions: 1143177
Number of successful extensions: 1228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1206
Number of HSP's successfully gapped: 58
Length of query: 241
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 147
Effective length of database: 6,768,326
Effective search space: 994943922
Effective search space used: 994943922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)