RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16095
(241 letters)
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn
dependent nucleotide phosphatase, metalloprotease,
hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus
abyssi} PDB: 2ivo_A 2ivp_A*
Length = 330
Score = 275 bits (707), Expect = 3e-93
Identities = 80/167 (47%), Positives = 112/167 (67%), Gaps = 4/167 (2%)
Query: 75 KKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134
++ +L+N T T G G P+E A+HH + +L++AL +A VS DDIDVI +++G
Sbjct: 19 SEDKVLANVFDTLTTEKG-GIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQG 77
Query: 135 PGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVI 194
PG+G L VVA AR LA+ + KPIVGVNHCI H+E+ + + ++P LYVSGGNTQV+
Sbjct: 78 PGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITK-MFGVKDPVGLYVSGGNTQVL 136
Query: 195 AYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYNIEQMAKK 241
A RYR+FGET+DI +GN +D FAR L L P +E++A+K
Sbjct: 137 ALEGGRYRVFGETLDIGIGNAIDVFARELGLGFPGGP--KVEKLAEK 181
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc, keops
complex, ATPase, metal ION binding; 3.02A {Thermoplasma
acidophilum}
Length = 334
Score = 272 bits (698), Expect = 9e-92
Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 5/168 (2%)
Query: 75 KKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134
++ IL+ Y P G P + A HH + V+ AL++AK+S DID+I ++ G
Sbjct: 24 DESRILAMESSMY-RPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFSMG 82
Query: 135 PGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYVSGGNTQVI 194
PG+ L V A ART+++L KPI+GVNH +GHIE+GR VT +P +LYVSGGNTQVI
Sbjct: 83 PGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIGRRVTGAIDPVMLYVSGGNTQVI 142
Query: 195 AYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP-GYNIEQMAKK 241
A+ RYR+ GET+DI +GN +D+FAR + P P G IE++A K
Sbjct: 143 AHVNGRYRVLGETLDIGIGNMIDKFAREAGI---PFPGGPEIEKLAMK 187
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 267 bits (685), Expect = 3e-87
Identities = 96/241 (39%), Positives = 129/241 (53%), Gaps = 61/241 (25%)
Query: 2 VIAIGFEGSANKLGIGIVDTKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEEKFD 61
+I +G EG+A K G+GIV + +L N Y PP +G PRE A HH
Sbjct: 6 MICLGLEGTAEKTGVGIVTSDG-EVLFNKTIMY-KPPKQGINPREAADHHAET------- 56
Query: 62 YLSQNQRGKGSIGKKNTILSNCRRTYVTPPGEGFLPRETAQHHKSKVLEVLKEALDQAKV 121
+++KEA +
Sbjct: 57 ----------------------------------------------FPKLIKEAFEVVDK 70
Query: 122 SRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENP 181
++ID+I +++GPG+G L V A VARTL+L KPI+GVNHCI HIE+G+ T+ E+P
Sbjct: 71 --NEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTTEAEDP 128
Query: 182 TVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSP-GYNIEQMAK 240
LYVSGGNTQVIAY ++YR+FGET+DIAVGNCLD+FAR + L P P G IE++A+
Sbjct: 129 LTLYVSGGNTQVIAYVSKKYRVFGETLDIAVGNCLDQFARYVNL---PHPGGPYIEELAR 185
Query: 241 K 241
K
Sbjct: 186 K 186
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural
genomics, JOI for structural genomics, JCSG; 2.50A
{Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Length = 218
Score = 52.4 bits (126), Expect = 2e-08
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAI---VARTLALLW 155
+ H + V+K+ LD+ + D+DV+ GP G LT + + L +
Sbjct: 40 TGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGIGP---GGLTGLRVGIATVVGLVSPY 96
Query: 156 NKPIVGVN 163
+ P+ +N
Sbjct: 97 DIPVAPLN 104
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70
nucleotide-binding fold, bacterial resuscitation BUT
non-culturable state, Y YJEE; 3.10A {Vibrio
parahaemolyticus}
Length = 213
Score = 51.6 bits (124), Expect = 3e-08
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAI---VARTLALLW 155
+ H KVL ++ E L +A ++ D+D + + +GP G T V I +A+ LA
Sbjct: 30 VAPRDHTKKVLPMVDEVLKEAGLTLQDLDALAFGRGP---GSFTGVRIGIGIAQGLAFGA 86
Query: 156 NKPIVGVN 163
P++GV+
Sbjct: 87 ELPMIGVS 94
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF,
actin-like-fold, glycoprotease, chaperone; 2.05A
{Salmonella typhimurium} PDB: 2gem_A 1okj_A
Length = 231
Score = 51.7 bits (124), Expect = 3e-08
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAI---VARTLALLW 155
+ H ++L +++E L + S ++ID + + +GP G T V I +A+ LAL
Sbjct: 29 LCPREHTQRILPMVQEILAASGASLNEIDALAFGRGP---GSFTGVRIGIGIAQGLALGA 85
Query: 156 NKPIVGVN 163
N P++GV+
Sbjct: 86 NLPMIGVS 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 42/235 (17%), Positives = 68/235 (28%), Gaps = 79/235 (33%)
Query: 43 LPRETAQHHKSKVLEEKF-DYLSQNQRGKGSIGKKNTILSNCRRTYVTPPGE------GF 95
+P TA + L+E+F L + G + + P E G+
Sbjct: 22 VP--TASFFIASQLQEQFNKILPEPTEG---FAADDEPTT---------PAELVGKFLGY 67
Query: 96 LPRETAQHHKSKVLEVLKEALDQAK---VSRDDIDVICYTKGPGMGGPLTVVAIVARTLA 152
+ + +VL L + + + +DI + A L
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH--------------ALAA----KLL 109
Query: 153 LLWNKPIVGVNHCI-----GHIEMGRNVTKCENPTVLY-VSGGNTQVIAYSRQRYRIFG- 205
+ +V I I R K N + V GN Q++A IFG
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-------IFGG 162
Query: 206 ---------ETIDI------AVGNCLDRFARVLK-LSNDP-------SPGYNIEQ 237
E D+ VG+ + A L L + G NI +
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 9e-05
Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 45/174 (25%)
Query: 18 IVDTKKNTILSN--CRRTYVTPPGEG---FL-------PRETAQHHKSKVLEEKFDYLSQ 65
+ D K+ ILS ++ L E Q +VL + +L
Sbjct: 38 VQDMPKS-ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 66 NQRGKGSIGKKNTIL-SNCR-RTYVTPP--GEGFLPRETAQHHKSKVLEVLKEALDQAKV 121
+ + T + R R Y + + R + L++AL +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-------QPYLKLRQALLEL-- 147
Query: 122 SRDDIDVICYTKGPGMGGP-LTVVAI-VARTLALL--------WNKPIVGVNHC 165
R +V+ G+ G T VA+ V + + W + + +C
Sbjct: 148 -RPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNC 192
Score = 40.2 bits (93), Expect = 4e-04
Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 47/165 (28%)
Query: 102 QHHKSKVLEVLKEA----------LDQAK--VSRDDIDVICYTKGPGMGGPLTVVAIVAR 149
Q+ +L V ++A D K +S+++ID I +K V+
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA-----------VSG 63
Query: 150 TLALLW---NKPIVGVNHCIGHIE-------MGRNVTKCENPTVLYVSGGNTQVIAYSRQ 199
TL L W +K V + + M T+ P+++ Y Q
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--------YIEQ 115
Query: 200 RYRIFGETIDIAVGNCLDRFARVLKLSN-----DPSPGYNIEQMA 239
R R++ + A N + R LKL P+ I+ +
Sbjct: 116 RDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Score = 40.2 bits (93), Expect = 4e-04
Identities = 32/246 (13%), Positives = 66/246 (26%), Gaps = 76/246 (30%)
Query: 16 IGIVDTKKNTILSNCRRTYVT--PPGEGFLPRETAQHHKSKVLEEKFDYLSQNQRGKGS- 72
+ D LS T+++ P E K L+ + L + + +
Sbjct: 275 KQVTD-----FLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPR-EVLTTNP 327
Query: 73 -----IGKKNTILSNCRRTYVTPPGEGFLPRETAQHHK--SKVLEVLKEALDQAKVSRDD 125
I + + + T+ + + + L VL+ A +
Sbjct: 328 RRLSIIAES---IRDGLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYRK------ 373
Query: 126 IDVICYTKGPGMGGPLTV----VAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENP 181
+ + L+V I L+L+W I ++ V K
Sbjct: 374 ----MFDR-------LSVFPPSAHIPTILLSLIWFDVIK--------SDVMVVVNKLHKY 414
Query: 182 TVLYVSGGNTQVIAYSRQRYRIFGETIDIAVGN---------CLDRFARVLKL-SNDPSP 231
+++ Q I +++ V +D + S+D P
Sbjct: 415 SLV-----EKQ---PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 232 ----GY 233
Y
Sbjct: 467 PYLDQY 472
Score = 30.6 bits (68), Expect = 0.52
Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 37/122 (30%)
Query: 29 NCRRTYVTPPGEGFLPRETAQ-------HH-KSKVLEEK----------FDYLSQNQRGK 70
N +T+ + +P Q HH K+ E+ F +L Q R
Sbjct: 454 NIPKTF---DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 71 GS----IGKKNTILSNCR--RTYVT---PPGEG-------FLPRETAQHHKSKVLEVLKE 114
+ G L + + Y+ P E FLP+ SK ++L+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 115 AL 116
AL
Sbjct: 571 AL 572
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 31.9 bits (72), Expect = 0.17
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 45 RETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILSNCRRTYVTPPGEGFLPRETAQHH 104
Q H + LE+ D+ + R+ G +P++ +
Sbjct: 76 NYNNQSHLADFLEDYIDFAINEPDLLRPVVIAP---QFSRQMLDRKLLLGNVPKQMTCYI 132
Query: 105 KSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGG 139
+ ++ + + LD+ + G G
Sbjct: 133 REYHVDRVIKKLDEMCDLDSFFLFLH-----GRAG 162
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 30.7 bits (70), Expect = 0.41
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 93 EGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVIC 130
E + + ++ +AL+ A + +DI
Sbjct: 225 ELADLPDLTHRYIDLLVAAKTQALEDAGTAIEDIAHAV 262
Score = 28.0 bits (63), Expect = 2.7
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 113 KEALDQAKVSRDDID-VICYTKGP-GMGGPLTVVAIVARTLA 152
+ AL + V D+ V+ + G+ + +
Sbjct: 63 RAALGRGDVDPADVSLVLHSSLWFQGIDLWPAASYVAHEAVG 104
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP:
d.17.4.28
Length = 163
Score = 29.4 bits (66), Expect = 0.62
Identities = 12/96 (12%), Positives = 19/96 (19%), Gaps = 14/96 (14%)
Query: 127 DVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHCIGHIEMGRNVTKCENPTVLYV 186
D + G G+ + I + + H + N V
Sbjct: 57 DAVFDLSGIGLTPQVGHAGIREFFTNVF--ANMSHHAHYLT------------NFAVTGY 102
Query: 187 SGGNTQVIAYSRQRYRIFGETIDIAVGNCLDRFARV 222
G + AY G R
Sbjct: 103 EGDTASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRT 138
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 29.7 bits (68), Expect = 0.87
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 111 VLKEALDQAKVSRDDID-VI---CYTKGPGMGGPLTVVAIVARTLALL----WNKPIVGV 162
KEA+ +A ++ D ID + T G G +AR +AL KP + +
Sbjct: 38 AAKEAIKRANITPDMIDESLLGGVLTAGLGQN--------IARQIALGAGIPVEKPAMTI 89
Query: 163 N 163
N
Sbjct: 90 N 90
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 29.0 bits (66), Expect = 1.3
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
Query: 111 VLKEALDQAKVSRDDID-VI---CYTKGPGMGGPLTVVAIVARTLALL----WNKPIVGV 162
+KEA+ + ++ +ID VI G G VAR +A+ + P V
Sbjct: 36 AVKEAISRVGLNLSEIDEVIIGNVLQTGLGQN--------VARQIAINAGIPNSVPSYTV 87
Query: 163 N 163
N
Sbjct: 88 N 88
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 28.6 bits (65), Expect = 1.8
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 12/47 (25%)
Query: 111 VLKEALDQAKVSRDDID-VI---CYTKGPGMGGPLTVVAIVARTLAL 153
VL+EA+ + V ++D VI C + ART AL
Sbjct: 36 VLQEAVKRGGVEPHEVDEVILGHCIQRTDEAN--------TARTAAL 74
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type
transferase; 1.90A {Marchantia polymorpha}
Length = 413
Score = 28.0 bits (62), Expect = 2.6
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLAL 153
E A+ + + +I I G+ P A+ L L
Sbjct: 126 EASMNAIKEWGRPKSEITHIVMATTSGVNMP-GAELATAKLLGL 168
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 27.8 bits (63), Expect = 3.3
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 111 VLKEALDQAKVSRDDID-VI---CYTKGPGMGGPLTVVAIVA 148
V+ L++A V+ +++ VI G G P A+ A
Sbjct: 34 VISAVLERAGVAAGEVNEVILGQVLPAGEGQ-NPARQAAMKA 74
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 28.1 bits (63), Expect = 3.4
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 108 VLEVLKEALDQAKVSRDDIDVICY-TKGPGM------GGPLTVV---AIVARTLALLWN 156
+ + + ++ V DD+ I M G PL ++ + LW
Sbjct: 69 LTTSVPAVMKESGVDADDVIGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPHSWVKLWK 127
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 28.1 bits (63), Expect = 3.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 107 KVLEVLKEALDQAKVSRDDIDVI 129
+V E + +AL QAK+S +++D +
Sbjct: 316 RVTEPVTKALAQAKLSAEEVDFV 338
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 27.7 bits (62), Expect = 3.5
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 113 KEALDQAKVSRDDID-VICYTKGPGMGGPLT 142
++A+++ R+ I V+C P
Sbjct: 126 EQAIERWGKPRERIGAVLCACSNMQRAYPAM 156
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 27.4 bits (62), Expect = 3.8
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 71 GSIGKKNTILSNCRRTYVTPPGEGFLP---RETAQHHKSKVLEVLKEALDQAKVSRDDID 127
+ G +L+ V P L E + +++ ++ E L + R +D
Sbjct: 180 HADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLD 239
Score = 26.7 bits (60), Expect = 8.4
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 113 KEALDQAKVSRDDIDVI 129
A++ A + +D I +I
Sbjct: 60 TRAIEMAGIEKDQIGLI 76
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 27.4 bits (62), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 111 VLKEALDQAKVSRDDID-VI---CYTKGPGMGGPLTVVAIVA 148
V+KE L +A V+ +D+ VI G G P+ ++ A
Sbjct: 37 VIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ-NPVRQASVGA 77
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 27.5 bits (62), Expect = 4.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 110 EVLKEALDQAKVSRDDIDVI 129
+V + A+D A V D IDV
Sbjct: 236 DVGRRAMDAAGVRPDQIDVF 255
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 27.6 bits (62), Expect = 4.3
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 113 KEALDQAKVSRDDIDVI 129
++AL A + + I ++
Sbjct: 77 RKALIDANIGIEKIGLL 93
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 27.5 bits (62), Expect = 4.6
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 107 KVLEVLKEALDQAKVSRDDIDVI 129
V+ +EAL+ A ++ D+
Sbjct: 232 DVVPAAREALEVAGLTVGDLVAF 254
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 27.2 bits (60), Expect = 4.6
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLAL 153
E A+ Q + I + + G+ P +A+ L L
Sbjct: 121 EAAISAIKQWGQPKSKITHLVFATTSGVDMP-GADFQLAKLLGL 163
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast
structural genomics consortium, BTR28, methyltrans PSI;
2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Length = 242
Score = 27.1 bits (61), Expect = 4.8
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 40 EGFLPRETAQHHKSKVLEEKFDYLSQNQR 68
G+LP E + ++K L+ + +
Sbjct: 141 HGYLPIEPGE--RAKKLKTLEQRVYAESQ 167
>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase;
YP_001165631.1; 1.75A {Novosphingobium aromaticivorans
dsm 12ORGANISM_TAXID} SCOP: d.17.4.4
Length = 163
Score = 26.9 bits (59), Expect = 5.1
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 180 NPTVLYVSGGNTQVIA-YSRQRYRIFGETIDIAVGNCLDRFARV 222
+ V G A Y + R GET G +DRF
Sbjct: 94 RAVITGVEGDQVSAEASYVVFQTRNDGETRIYNAGKYVDRFDLS 137
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 27.3 bits (60), Expect = 5.3
Identities = 12/110 (10%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 42 FLPRETAQHHKSKVLEEKFDYLSQNQRGKGSIGKKNTILSNCRRTYVTPPGEGFLPRETA 101
+ + ++H +K +++ I ++++I + P
Sbjct: 21 AIDILSKRYHPESPAMKKVLAINRY----TGIDQRSSIGNPDHPLVNKPNPPTVKELHEV 76
Query: 102 QHHKSKVL--EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVAR 149
L E ++A+ +A++ I + T P +
Sbjct: 77 FMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKE 126
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 27.2 bits (60), Expect = 5.6
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLAL 153
E +A+D+ + + I + + G+ P + + L L
Sbjct: 113 EAAVKAIDEWGLPKSKITHLIFCTTAGVDMP-GADYQLVKLLGL 155
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 27.2 bits (60), Expect = 5.8
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLAL 153
E +A+ + + I + G+ P + + L L
Sbjct: 108 EAAVKAIKEWGQPKSKITHLIVCTTSGVDMP-GADYQLTKLLGL 150
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 26.8 bits (60), Expect = 6.5
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 113 KEALDQAKVSRDDIDVI 129
++ Q V D +D +
Sbjct: 89 RKLFAQGAVGADQVDFV 105
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 26.8 bits (59), Expect = 6.8
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLAL 153
E ++A+ + + +I + + G+ P +A L L
Sbjct: 108 EAAEKAIKEWGRPKSEITHLVFCSISGIDMP-GADYRLATLLGL 150
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 26.5 bits (59), Expect = 7.2
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 92 GEGFLPRETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYT 132
G G L + ++ + L ++ DID + T
Sbjct: 67 GNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMT 107
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 26.8 bits (60), Expect = 7.7
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 106 SKVLEVLKEALDQAKVSRDDIDVI 129
V+ +KEA++++ ++ +DI I
Sbjct: 76 QTVVSTVKEAIEKSGITANDIAAI 99
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 26.8 bits (59), Expect = 7.7
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLAL 153
+ AL A + D+D + + P + +A L L
Sbjct: 143 RAARGALQIAGLDVADVDCLITSNSTTPALP-GLDVALANRLPL 185
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 26.4 bits (59), Expect = 8.5
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 113 KEALDQAKVSRDDIDVI 129
++ L D ID +
Sbjct: 75 EKLLAGLGWQADSIDAL 91
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 26.3 bits (58), Expect = 9.6
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLAL 153
E K+A+ + DI + T G P V + L L
Sbjct: 102 EAAKKAIAEWGRPAADITHLVVTTNSGAHVP-GVDFRLVPLLGL 144
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 26.3 bits (59), Expect = 9.6
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 113 KEALDQAKVSRDDIDVI 129
K A++ A+++ DI++I
Sbjct: 67 KNAIEAAQINPQDIELI 83
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 26.3 bits (59), Expect = 9.8
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 113 KEALDQAKVSRDDIDVI 129
+ A++ A + ID+I
Sbjct: 74 QRAIEAADIDPQSIDLI 90
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 26.4 bits (59), Expect = 9.9
Identities = 5/17 (29%), Positives = 13/17 (76%)
Query: 113 KEALDQAKVSRDDIDVI 129
++A++ A + +DID++
Sbjct: 83 RQAIEAAGLLPEDIDLL 99
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 26.3 bits (59), Expect = 9.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 106 SKVLEVLKEALDQAKVSRDDIDVI 129
+ VL V+ E +++ V D I I
Sbjct: 56 TSVLAVMTEVINENDVRADQIAGI 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.406
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,797,225
Number of extensions: 225040
Number of successful extensions: 673
Number of sequences better than 10.0: 1
Number of HSP's gapped: 660
Number of HSP's successfully gapped: 82
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)