RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16095
(241 letters)
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga
maritima [TaxId: 2336]}
Length = 103
Score = 64.9 bits (158), Expect = 2e-14
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 99 ETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKP 158
+ H + V+K+ LD+ + D+DV+ GPG L V L ++ P
Sbjct: 28 TGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIP 87
Query: 159 IVGVNH 164
+ +N
Sbjct: 88 VAPLNS 93
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 53.8 bits (129), Expect = 3e-10
Identities = 17/73 (23%), Positives = 37/73 (50%)
Query: 98 RETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNK 157
+ H ++L ++++ L + S DI+ + Y +GPG + + +A+ LAL
Sbjct: 27 ELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAEL 86
Query: 158 PIVGVNHCIGHIE 170
P++GV+ + +
Sbjct: 87 PMIGVSTLMTMAQ 99
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 47.9 bits (113), Expect = 2e-07
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 23/140 (16%)
Query: 104 HKSKVLEVLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVN 163
S + E L+ A + ++D+ T L ++
Sbjct: 36 GTSGPARSISEVLENAHMKKEDMAFTLATGYGRNS---------------LEGIADKQMS 80
Query: 164 HCIGHIEMGRNVTKCENPTVLYVSGGNTQVIAYSRQRYRIF--GETIDIAVGNCLDRFAR 221
H + TV+ + G + +VI F + G LD A
Sbjct: 81 ELSCHAMGASFIWP-NVHTVIDIGGQDVKVIHVENGTMTNFQMNDKCAAGTGRFLDVMAN 139
Query: 222 VLKLSNDPSPGYNIEQMAKK 241
+L++ ++ ++ K
Sbjct: 140 ILEVKVS-----DLAELGAK 154
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 29.3 bits (65), Expect = 0.40
Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 111 VLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGVNHC----I 166
V+ L++A V+ +++ + + G A + G+N +
Sbjct: 34 VISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLAGSGL 93
Query: 167 GHIEMGRNVTKCENPTVLYVSGGNTQVIAYSRQRYR 202
+ +G + +++ G + +A R
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 28.8 bits (64), Expect = 0.43
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 98 RETAQHHKSKVLEVLKEALDQAKVSRDDIDVICYTKG 134
E L+ +++AL AK+ + I I G
Sbjct: 115 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGG 151
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domains 2 and 5 {Streptomyces
antibioticus [TaxId: 1890]}
Length = 96
Score = 26.6 bits (59), Expect = 1.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 109 LEVLKEALDQAKVSRDDI 126
VL AL QA+ +R I
Sbjct: 62 ASVLAAALKQARDARLHI 79
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 27.8 bits (61), Expect = 1.1
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 111 VLKEALDQAKVSRDDIDVICYTKGPGMGGPLTVVAIVARTLALL 154
L +D++ V +++++ + G VA +A LA
Sbjct: 31 ALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGF 74
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 212
Score = 27.2 bits (60), Expect = 1.6
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 181 PTVLYVSGGNTQVIA-YSRQRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYN-IEQM 238
P +L G ++A YS+ Y+ T G +L + +M
Sbjct: 28 PMLLVNMGSGVSILAVYSKDNYKRVTGT--SLGGGTFLGLCCLL----TGCETFEEALEM 81
Query: 239 AKK 241
A K
Sbjct: 82 AAK 84
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 372
Score = 26.3 bits (57), Expect = 3.3
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 110 EVLKEALDQAKVSRDDIDVICYTKGPGMGGPLT 142
+V K AL +I ++ G P
Sbjct: 98 DVSKRALAGLPYRAAEIGLLVLATSTGFIAPGV 130
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
[TaxId: 32046]}
Length = 743
Score = 26.3 bits (58), Expect = 4.0
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 108 VLEVLKEALDQAKVSR-----DDIDVICYTKGPGMGGPLTVVAIVARTLALLWNKPIVGV 162
VL +LK L A+ SR ++ GPG GG V L L W + V
Sbjct: 538 VLILLKGVLF-ARSSRLIPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISV 596
Query: 163 NHCIGHIEMGRNV--TKCENPTVLYVSGGN 190
+M +V T + TV +++GGN
Sbjct: 597 VIFHFSWKMQSDVWGTVAPDGTVSHITGGN 626
>d1kqra_ b.29.1.14 (A:) vp4 sialic acid binding domain {Rhesus
rotavirus [TaxId: 10969]}
Length = 160
Score = 25.5 bits (56), Expect = 4.0
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 193 VIAYSRQRYRIFGETIDIAVGNCLD---RFARVLKLSND 228
V + +R Y +FG I + N +F V+K + +
Sbjct: 48 VTSETRS-YTLFGTQEQITIANASQTQWKFIDVVKTTQN 85
>d1xkra_ d.252.1.1 (A:) Chemotaxis protein CheC {Thermotoga maritima
[TaxId: 2336]}
Length = 205
Score = 24.9 bits (54), Expect = 7.8
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 205 GETIDIAVGNCLDRFARVLKLSNDPSP 231
E +I G + A L D P
Sbjct: 112 REIGNIMCGTYVSALADFLGFKIDTLP 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.406
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 901,374
Number of extensions: 40409
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 13
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)