BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16096
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DG2|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|B Chain B, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|C Chain C, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|D Chain D, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|E Chain E, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|F Chain F, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
Length = 265
Score = 149 bits (375), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 101/157 (64%), Gaps = 5/157 (3%)
Query: 1 MFGYEPEIYYPKPPSKELYVNLLHQCKSLDIPVSESLPAE----TSVFHLIVDAIFGFSY 56
+FGY+P IYYPK P+K L+ L+ QC+ DIP P E ++ L+VDAIFGFS+
Sbjct: 104 LFGYQPTIYYPKRPNKPLFTGLVTQCQKXDIPFLGEXPPEPXXVDELYELVVDAIFGFSF 163
Query: 57 KPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLCAHKF 116
K +RE F ++++ +P+ SIDIPSGW+VE G QP LISLTAPK A F
Sbjct: 164 KGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGN-PSGIQPDLLISLTAPKKSATHF 222
Query: 117 EGKHHFLGGRFIPKQLEKEYDLNLPPYKGTDTYVKID 153
G++H+LGGRF+P LEK+Y LNLP Y T+ ++
Sbjct: 223 TGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 259
>pdb|2O8N|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|3RNO|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Nadp.
pdb|3RO7|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymine.
pdb|3ROE|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|B Chain B, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|C Chain C, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|D Chain D, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|E Chain E, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|F Chain F, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROG|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine 3'-Monophosphate
pdb|3ROX|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Theophylline
pdb|3ROZ|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Nicotinamide
Length = 265
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 101/157 (64%), Gaps = 5/157 (3%)
Query: 1 MFGYEPEIYYPKPPSKELYVNLLHQCKSLDIPVSESLPAE----TSVFHLIVDAIFGFSY 56
+FGY+P IYYPK P+K L+ L+ QC+ DIP P E ++ L+VDAIFGFS+
Sbjct: 104 LFGYQPTIYYPKRPNKPLFTGLVTQCQKXDIPFLGEXPPEPXXVDELYELVVDAIFGFSF 163
Query: 57 KPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLCAHKF 116
K +RE F ++++ +P+ SIDIPSGW+VE G QP LISLTAPK A F
Sbjct: 164 KGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGN-PSGIQPDLLISLTAPKKSATHF 222
Query: 117 EGKHHFLGGRFIPKQLEKEYDLNLPPYKGTDTYVKID 153
G++H+LGGRF+P LEK+Y LNLP Y T+ ++
Sbjct: 223 TGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 259
>pdb|1JZT|A Chain A, Crystal Structure Of Yeast Ynu0, Ynl200c
pdb|1JZT|B Chain B, Crystal Structure Of Yeast Ynu0, Ynl200c
Length = 246
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 16/166 (9%)
Query: 1 MFGYEPEIYYPKPPSK-ELYVNLLHQCKSLDIPVS--------ESLPAETSVFHLIVDAI 51
+FGY P ++YPK + E Y L+HQ +PV E L E ++ IVDAI
Sbjct: 83 LFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVLSQDEGNWLEYLKPEKTL--CIVDAI 140
Query: 52 FGFSYKPPLRELFVPVINLFKSTK--IPVVSIDIPSGWNVEHGPVEH-KYQPHTLISLTA 108
FGFS+KPP RE F ++ + IP+VS+D+P+GW+V+ GP+ P L+SLT
Sbjct: 141 FGFSFKPPXREPFKGIVEELCKVQNIIPIVSVDVPTGWDVDKGPISQPSINPAVLVSLTV 200
Query: 109 PKLCAHKFEGKH--HFLGGRFIPKQLEKEYDLNLPPYKGTDTYVKI 152
PK C+ H++GGRFIP+ ++ Y+ TD +K+
Sbjct: 201 PKPCSSHIRENQTTHYVGGRFIPRDFANKFGFEPFGYESTDQILKL 246
>pdb|2AX3|A Chain A, Crystal Structure Of A Putative Carbohydrate Kinase
(Tm0922) From Thermotoga Maritima Msb8 At 2.25 A
Resolution
Length = 502
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 38 PAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV-EH 96
P+ + F ++VDAIFG + + + +INL + VVS+D+PSG + G V
Sbjct: 115 PSILNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSGIDSNTGKVLRT 174
Query: 97 KYQPHTLISLTAPKLCAHKFEGK 119
+ ++ PK+ F G+
Sbjct: 175 AVKADLTVTFGVPKIGHILFPGR 197
>pdb|3RS8|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Ribose
pdb|3RS9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RSF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
pdb|3RSQ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
pdb|3RSS|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
pdb|3RT7|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Glucose
pdb|3RT9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A
pdb|3RTA|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Acetyl
Coenzyme A
pdb|3RTC|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad And
Atp.
pdb|3RTD|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
And Adp.
pdb|3RTE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
And Atp.
pdb|3RTG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A And Atp
pdb|3RU3|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
And Atp.
pdb|3RRB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Amp
pdb|3RRE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Adp
pdb|3RRF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Atp
pdb|3RRJ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RSG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad.
pdb|3RTB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Adenosine-3'-5'-Diphosphate
pdb|3RU2|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
Length = 502
Score = 40.0 bits (92), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 33 VSESLPAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHG 92
V + P+ + F ++VDAIFG + + + +INL + VVS+D+PSG + G
Sbjct: 110 VEQFEPSILNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSGIDSNTG 169
Query: 93 PV-EHKYQPHTLISLTAPKLCAHKFEGK 119
V + ++ PK+ F G+
Sbjct: 170 KVLRTAVKADLTVTFGVPKIGHILFPGR 197
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4
(mouse); Form2
Length = 152
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 74 TKIPVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLCAHKFEGKHHFL----GGRFIP 129
+IP +++D+P ++V VE +Q +IS LC + G+ F+ GGR P
Sbjct: 91 NEIPDINLDVPHSYSVLERFVEECFQA-GIISKQLRDLCPSRSRGRKRFVSEGDGGRLKP 149
Query: 130 K 130
+
Sbjct: 150 E 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,475,877
Number of Sequences: 62578
Number of extensions: 230479
Number of successful extensions: 421
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 8
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)