Query psy16096
Match_columns 154
No_of_seqs 139 out of 1040
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 20:46:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03050 pyridoxine (pyridoxam 100.0 1.5E-39 3.3E-44 261.0 16.4 150 2-152 86-246 (246)
2 PLN02918 pyridoxine (pyridoxam 100.0 9.2E-37 2E-41 266.1 14.4 152 1-152 160-323 (544)
3 PLN03049 pyridoxine (pyridoxam 100.0 3.3E-36 7.1E-41 259.9 14.5 151 2-152 85-241 (462)
4 TIGR00197 yjeF_nterm yjeF N-te 100.0 2.1E-33 4.6E-38 220.0 13.2 123 4-128 71-198 (205)
5 COG0062 Uncharacterized conser 100.0 2.8E-33 6.1E-38 218.5 11.5 123 2-126 75-202 (203)
6 PF03853 YjeF_N: YjeF-related 100.0 6.6E-32 1.4E-36 205.7 7.4 111 2-112 51-169 (169)
7 PRK10565 putative carbohydrate 100.0 4.3E-31 9.4E-36 230.6 13.5 124 2-127 86-213 (508)
8 KOG2585|consensus 99.9 5.1E-23 1.1E-27 174.2 8.8 152 2-153 292-451 (453)
9 PF04250 DUF429: Protein of un 66.6 8 0.00017 29.8 3.6 31 61-92 27-57 (209)
10 PRK00615 glutamate-1-semialdeh 53.6 15 0.00032 31.9 3.3 83 44-136 203-290 (433)
11 cd04795 SIS SIS domain. SIS (S 51.2 21 0.00046 22.7 3.1 33 49-82 49-81 (87)
12 COG2090 Uncharacterized protei 49.5 18 0.00038 26.9 2.6 42 49-90 36-77 (141)
13 PRK12452 cardiolipin synthetas 48.8 42 0.0009 29.9 5.4 50 1-50 382-435 (509)
14 PLN02482 glutamate-1-semialdeh 47.3 26 0.00056 30.9 3.8 85 44-136 248-335 (474)
15 cd05014 SIS_Kpsf KpsF-like pro 46.2 26 0.00057 24.2 3.1 92 8-111 3-103 (128)
16 COG0160 GabT 4-aminobutyrate a 45.0 52 0.0011 29.0 5.3 65 42-108 222-291 (447)
17 PF11613 UCN2: Agonist of cort 44.9 1.6 3.5E-05 25.0 -2.6 10 78-87 2-11 (38)
18 PRK13360 omega amino acid--pyr 44.0 46 0.00099 28.9 4.8 86 44-137 217-307 (442)
19 PF00202 Aminotran_3: Aminotra 43.1 57 0.0012 27.1 5.1 84 44-136 179-267 (339)
20 TIGR00699 GABAtrns_euk 4-amino 42.8 50 0.0011 29.1 4.9 64 44-109 253-323 (464)
21 PRK06082 4-aminobutyrate amino 42.6 44 0.00095 29.2 4.5 60 44-104 231-294 (459)
22 PRK05630 adenosylmethionine--8 41.0 51 0.0011 28.4 4.6 85 44-136 202-292 (422)
23 PRK01642 cls cardiolipin synth 40.4 63 0.0014 28.4 5.2 54 1-54 356-416 (483)
24 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.1 35 0.00075 23.5 3.0 53 49-109 48-100 (126)
25 cd05710 SIS_1 A subgroup of th 39.9 39 0.00085 23.5 3.2 32 49-81 49-80 (120)
26 PRK11543 gutQ D-arabinose 5-ph 39.7 87 0.0019 25.5 5.7 91 7-109 44-143 (321)
27 cd05005 SIS_PHI Hexulose-6-pho 37.8 1.7E+02 0.0036 21.7 8.3 95 7-113 35-133 (179)
28 PRK12381 bifunctional succinyl 36.8 69 0.0015 27.1 4.8 85 44-137 185-274 (406)
29 PRK11522 putrescine--2-oxoglut 35.2 61 0.0013 28.4 4.2 85 44-136 233-322 (459)
30 COG5026 Hexokinase [Carbohydra 34.1 20 0.00042 31.7 1.0 83 41-127 216-306 (466)
31 PRK11263 cardiolipin synthase 34.0 85 0.0018 27.2 4.9 50 1-50 244-297 (411)
32 PRK05443 polyphosphate kinase; 33.4 1.2E+02 0.0027 28.2 6.1 36 1-36 391-428 (691)
33 cd06300 PBP1_ABC_sugar_binding 33.0 2.1E+02 0.0046 21.8 6.7 34 48-84 61-94 (272)
34 PRK07819 3-hydroxybutyryl-CoA 32.6 58 0.0012 26.5 3.5 50 2-52 27-93 (286)
35 TIGR00393 kpsF KpsF/GutQ famil 32.6 2.4E+02 0.0053 22.0 8.0 90 8-109 3-101 (268)
36 PRK12389 glutamate-1-semialdeh 32.5 79 0.0017 27.1 4.5 85 44-136 202-289 (428)
37 PRK04260 acetylornithine amino 31.8 3E+02 0.0064 22.8 8.2 86 44-138 167-257 (375)
38 PRK09264 diaminobutyrate--2-ox 29.1 95 0.0021 26.6 4.4 81 44-132 200-285 (425)
39 PF05226 CHASE2: CHASE2 domain 28.7 52 0.0011 26.6 2.6 27 59-85 61-87 (310)
40 cd05006 SIS_GmhA Phosphoheptos 28.7 67 0.0015 23.8 3.1 57 49-113 103-159 (177)
41 PRK03715 argD acetylornithine 28.2 1.2E+02 0.0026 25.8 4.8 62 44-107 181-247 (395)
42 cd05017 SIS_PGI_PMI_1 The memb 28.1 73 0.0016 22.0 3.0 33 49-82 45-77 (119)
43 COG1737 RpiR Transcriptional r 27.7 69 0.0015 25.9 3.2 96 8-115 133-237 (281)
44 TIGR03127 RuMP_HxlB 6-phospho 27.6 2.5E+02 0.0054 20.6 8.0 95 7-113 32-130 (179)
45 PLN02760 4-aminobutyrate:pyruv 27.4 82 0.0018 28.0 3.8 86 44-137 262-352 (504)
46 COG0686 Ald Alanine dehydrogen 26.9 1.2E+02 0.0027 25.9 4.5 33 39-72 227-259 (371)
47 cd01545 PBP1_SalR Ligand-bindi 26.9 2.8E+02 0.0061 21.0 6.5 33 48-84 57-89 (270)
48 COG2002 AbrB Regulators of sta 26.8 47 0.001 22.3 1.7 19 123-141 13-31 (89)
49 TIGR00441 gmhA phosphoheptose 25.8 83 0.0018 23.0 3.1 58 49-114 81-138 (154)
50 COG1509 KamA Lysine 2,3-aminom 25.2 52 0.0011 28.3 2.0 70 17-86 236-331 (369)
51 cd01391 Periplasmic_Binding_Pr 25.1 2.2E+02 0.0047 20.8 5.3 36 47-86 58-93 (269)
52 PRK07986 adenosylmethionine--8 25.0 1.9E+02 0.0041 25.0 5.6 85 44-136 206-296 (428)
53 PF13407 Peripla_BP_4: Peripla 24.9 2.9E+02 0.0063 20.9 6.1 23 62-84 67-89 (257)
54 TIGR03246 arg_catab_astC succi 24.9 1.5E+02 0.0034 24.9 4.9 85 44-137 181-270 (397)
55 PF09885 DUF2112: Uncharacteri 24.7 39 0.00085 25.0 1.1 33 76-108 56-89 (143)
56 PRK05093 argD bifunctional N-s 24.5 4.1E+02 0.0089 22.3 7.4 85 44-137 186-275 (403)
57 cd05565 PTS_IIB_lactose PTS_II 24.5 2.4E+02 0.0053 19.4 5.5 71 6-83 3-80 (99)
58 PF03082 MAGSP: Male accessory 24.4 44 0.00095 26.8 1.3 29 65-94 233-261 (264)
59 TIGR03282 methan_mark_13 putat 24.4 1.3E+02 0.0028 25.8 4.2 37 50-87 80-116 (352)
60 PRK07535 methyltetrahydrofolat 24.1 1.3E+02 0.0028 24.4 4.1 16 42-57 153-169 (261)
61 TIGR01754 flav_RNR ribonucleot 23.2 2.8E+02 0.006 19.6 8.6 33 41-76 48-82 (140)
62 COG0794 GutQ Predicted sugar p 23.2 3.8E+02 0.0081 21.1 9.5 95 7-115 41-146 (202)
63 PRK06173 adenosylmethionine--8 23.1 1.5E+02 0.0032 25.7 4.5 85 44-136 208-298 (429)
64 TIGR00700 GABAtrnsam 4-aminobu 23.0 1.5E+02 0.0032 25.3 4.5 85 44-137 199-288 (420)
65 PRK09792 4-aminobutyrate trans 22.3 1.7E+02 0.0036 25.1 4.7 85 44-137 200-289 (421)
66 PRK06541 hypothetical protein; 22.2 1.6E+02 0.0034 25.7 4.5 86 44-137 223-313 (460)
67 PRK07483 hypothetical protein; 22.1 1.1E+02 0.0025 26.4 3.7 86 44-137 201-292 (443)
68 PRK07480 putative aminotransfe 21.9 1.9E+02 0.004 25.3 4.9 85 44-136 221-310 (456)
69 TIGR00508 bioA adenosylmethion 21.8 2.4E+02 0.0053 24.2 5.6 86 44-137 209-300 (427)
70 PRK13936 phosphoheptose isomer 21.7 1.1E+02 0.0024 23.4 3.1 59 49-113 113-172 (197)
71 COG4923 Predicted nuclease (RN 21.6 1.1E+02 0.0024 24.3 3.1 28 62-89 37-65 (245)
72 PRK11557 putative DNA-binding 21.5 1.2E+02 0.0025 24.2 3.4 92 8-111 131-231 (278)
73 PRK02936 argD acetylornithine 21.5 2.2E+02 0.0048 23.5 5.1 85 44-137 169-258 (377)
74 PLN02624 ornithine-delta-amino 21.4 4.7E+02 0.01 22.8 7.3 85 44-136 226-315 (474)
75 PRK11613 folP dihydropteroate 21.2 1.6E+02 0.0035 24.2 4.2 28 42-72 178-205 (282)
76 TIGR00853 pts-lac PTS system, 21.1 2.7E+02 0.0059 18.7 5.2 72 5-83 5-83 (95)
77 PF14230 DUF4333: Domain of un 21.1 75 0.0016 20.9 1.8 24 72-95 35-58 (80)
78 COG1184 GCD2 Translation initi 21.0 3.7E+02 0.0081 22.5 6.2 81 3-84 143-230 (301)
79 TIGR01496 DHPS dihydropteroate 20.7 1.6E+02 0.0035 23.7 4.0 27 20-56 151-177 (257)
80 PRK10892 D-arabinose 5-phospha 20.7 1.2E+02 0.0025 24.8 3.3 92 7-110 49-149 (326)
81 TIGR03372 putres_am_tran putre 20.6 2E+02 0.0044 25.0 4.9 85 44-136 226-315 (442)
82 PRK09221 beta alanine--pyruvat 20.5 1.8E+02 0.0038 25.3 4.5 85 44-136 220-309 (445)
83 KOG2730|consensus 20.4 73 0.0016 25.9 1.9 31 43-83 94-124 (263)
84 PRK13937 phosphoheptose isomer 20.4 1.2E+02 0.0027 22.9 3.1 56 49-112 108-163 (188)
85 PF04430 DUF498: Protein of un 20.1 70 0.0015 22.2 1.6 38 43-85 53-90 (110)
No 1
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=1.5e-39 Score=261.00 Aligned_cols=150 Identities=44% Similarity=0.884 Sum_probs=130.0
Q ss_pred CcceeEEEEeCCCChHHHHHHHHHHHhCCCceecCCC------CCC-CCccEEEEeeecCCCCCCCCchHHHHHHHHhcC
Q psy16096 2 FGYEPEIYYPKPPSKELYVNLLHQCKSLDIPVSESLP------AET-SVFHLIVDAIFGFSYKPPLRELFVPVINLFKST 74 (154)
Q Consensus 2 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~l-~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~ 74 (154)
+||+|+||+....+++..+.++++++++++++..... ..+ ..+|+|||||||||++|+++++++++|+++|++
T Consensus 86 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~dlIIDaLfGtGl~~~l~~~~~~li~~iN~~ 165 (246)
T PLN03050 86 FGYEVTVCYPKQSSKPHYENLVTQCEDLGIPFVQAIGGTNDSSKPLETTYDVIVDAIFGFSFHGAPRAPFDTLLAQMVQQ 165 (246)
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHcCCCEEeccccccchhhhccccCCEEEEeccccCCCCccchHHHHHHHHHHhh
Confidence 6999999994332234437778889999877532101 123 568999999999999999999999999999976
Q ss_pred C---CCeEEEEcCCCCCCCCCCcc-cccccCeEEEcccccccccccCCCccceEeEEeChhhHHhhCCCCCCCCCCccEE
Q psy16096 75 K---IPVVSIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFIPKQLEKEYDLNLPPYKGTDTYV 150 (154)
Q Consensus 75 ~---~~vvSiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~iP~~~~~~~~~~~p~~~g~~~~~ 150 (154)
+ ++|||||||||+++|||++. .+|+||+|+||+++|+||++++|+ +|||++++|+++.++|++++|.|.|.++|+
T Consensus 166 ~~~~~~viAIDIPSGl~adtG~~~~~av~Ad~TvTf~~~K~gl~~~~g~-~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~ 244 (246)
T PLN03050 166 QKSPPPIVSVDVPSGWDVDEGDVSGTGMRPDVLVSLTAPKLSAKKFEGR-HFVGGRFLPPAIAEKYGLQKPPYPGVSQVM 244 (246)
T ss_pred ccCCCcEEEEeCCCcccCCCCCcCCceEeCCEEEEccccccccccCCCc-cceeeEECCHHHHHHhCCcCCCCCCcceEE
Confidence 5 78999999999999999988 899999999999999999999999 999999999999999999999999999998
Q ss_pred ec
Q psy16096 151 KI 152 (154)
Q Consensus 151 ~~ 152 (154)
-+
T Consensus 245 ~~ 246 (246)
T PLN03050 245 EV 246 (246)
T ss_pred eC
Confidence 54
No 2
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=100.00 E-value=9.2e-37 Score=266.09 Aligned_cols=152 Identities=51% Similarity=0.946 Sum_probs=133.4
Q ss_pred CCcceeEEEEeCCCChHHHHHHHHHHHhCCCceec--CCCCCC-CCccEEEEeeecCCCCCCCCchHHHHHHHH------
Q psy16096 1 MFGYEPEIYYPKPPSKELYVNLLHQCKSLDIPVSE--SLPAET-SVFHLIVDAIFGFSYKPPLRELFVPVINLF------ 71 (154)
Q Consensus 1 ~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~l-~~~dlIVDalfGtG~~~~l~~~~~~li~~i------ 71 (154)
++|++|+|++.+...+++.+.++++++++++++.. +....+ ..+|+|||||||||++|+++++++++|+++
T Consensus 160 ~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~l~~~~DlIVDALFGtG~~g~lr~~~~~lI~~i~~~~~~ 239 (544)
T PLN02918 160 HFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPFVSVEDLPADLSKDFDIIVDAMFGFSFHGAPRPPFDDLIRRLVSLQNY 239 (544)
T ss_pred HCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCeeeccccchhhccCCCEEEEeccccCCCCCCchHHHHHHHHHHhhhhc
Confidence 36999999997655556666678888999876532 112233 568999999999999999999999999999
Q ss_pred hcC-CCC-eEEEEcCCCCCCCCCCcc-cccccCeEEEcccccccccccCCCccceEeEEeChhhHHhhCCCCCCCCCCcc
Q psy16096 72 KST-KIP-VVSIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFIPKQLEKEYDLNLPPYKGTDT 148 (154)
Q Consensus 72 N~~-~~~-vvSiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~iP~~~~~~~~~~~p~~~g~~~ 148 (154)
|++ +.+ |||||||||||+|||++. .+|+||+||||+++|.|++.++|+.+|+||.++|+.+.++|++.+|.|.|++.
T Consensus 240 N~s~~~p~VVAVDIPSGldaDtG~v~g~aV~AD~TVTf~apK~Gl~~~~g~~h~lgGrf~p~~l~~ky~l~~p~y~g~~M 319 (544)
T PLN02918 240 EQTLKHPVIVSVDIPSGWHVEEGDHEGGGIKPDMLVSLTAPKLCAKKFRGPHHFLGGRFVPPSIVEKYKLHLPPYPGTSM 319 (544)
T ss_pred ccccCCCCEEEEECCCCCCcccCCcCCceecCCEEEECccCccccccCcchhheecCccCCHHHHHHhCCCCCCCCCccc
Confidence 877 776 999999999999999988 89999999999999999999999879999999999999999999999999999
Q ss_pred EEec
Q psy16096 149 YVKI 152 (154)
Q Consensus 149 ~~~~ 152 (154)
.|+|
T Consensus 320 ~Vri 323 (544)
T PLN02918 320 CVRI 323 (544)
T ss_pred cccc
Confidence 8865
No 3
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=3.3e-36 Score=259.91 Aligned_cols=151 Identities=49% Similarity=0.935 Sum_probs=134.0
Q ss_pred CcceeEEEEeCCCChHHHHHHHHHHHhCCCceecC--CCCCCC-CccEEEEeeecCCCCCCCCchHHHHHHHHhcCC--C
Q psy16096 2 FGYEPEIYYPKPPSKELYVNLLHQCKSLDIPVSES--LPAETS-VFHLIVDAIFGFSYKPPLRELFVPVINLFKSTK--I 76 (154)
Q Consensus 2 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~l~-~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~--~ 76 (154)
+|++|+|++++.+.+++++.+++.++++++++... ....+. .+|+|||||||||++|+++++++++|+++|+++ .
T Consensus 85 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~dlIVDaLfGtG~~g~l~~~~~~lI~~iN~~~~~~ 164 (462)
T PLN03049 85 FGYKPSICYPKRTDKPLYNGLVTQLESLSVPFLSVEDLPSDLSSQFDIVVDAMFGFSFHGAPRPPFDDLIQKLVRAAGPP 164 (462)
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHHHcCCceecccccchhhccCCcEEEEeccccccCCCCchHHHHHHHHHHhcCCCC
Confidence 69999999998766777888888999988765431 122343 689999999999999999999999999999875 7
Q ss_pred CeEEEEcCCCCCCCCCCcc-cccccCeEEEcccccccccccCCCccceEeEEeChhhHHhhCCCCCCCCCCccEEec
Q psy16096 77 PVVSIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFIPKQLEKEYDLNLPPYKGTDTYVKI 152 (154)
Q Consensus 77 ~vvSiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~iP~~~~~~~~~~~p~~~g~~~~~~~ 152 (154)
+|||||||||+|+|||++. .+|+||+||||+++|+|++.++|+.+|+||.+||+++.++|++.+|.|.+++.++.|
T Consensus 165 ~vvAVDiPSGl~~dtG~~~~~av~Ad~TvTf~~~K~g~~~~~g~~~~~ggrf~~~~~~~~~~~~iP~y~g~~M~v~l 241 (462)
T PLN03049 165 PIVSVDIPSGWHVEEGDVNGEGLKPDMLVSLTAPKLCAKMFKGPHHFLGGRFVPPAIVEKFKLHLPPYPGTSMCVRI 241 (462)
T ss_pred cEEEEECCCCccCCCCCcCCceecCCEEEEcccCCchhhccCCceEEeccccCCHHHHHHhCCCCCCCCCCcccccc
Confidence 8999999999999999988 899999999999999999999998789999999999999999999999999776543
No 4
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=100.00 E-value=2.1e-33 Score=219.96 Aligned_cols=123 Identities=27% Similarity=0.382 Sum_probs=103.7
Q ss_pred ceeEEEEeCCCC----hHHHHHHHHHHHhCCCceecCCCCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeE
Q psy16096 4 YEPEIYYPKPPS----KELYVNLLHQCKSLDIPVSESLPAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVV 79 (154)
Q Consensus 4 ~~V~v~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vv 79 (154)
+.|+|+++..+. +++++.+++.++..+.++.......+..+|+|||||||||++|+++++++++|+++|+++.+|+
T Consensus 71 ~~v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIDalfGtGl~~~l~~~~~~~i~~iN~~~~~vl 150 (205)
T TIGR00197 71 FGVEVFLLKKEKRIECTEQAEVNLKALKVGGISIDEGNLVKPEDCDVIIDAILGTGFKGKLREPFKTIVESINELPAPIV 150 (205)
T ss_pred CCCEEEEEccCCcccCcHHHHHHHHHHHhcCCccccccccccccCCEEEEeeecCCCCCccchHHHHHHHHHHhCCCCeE
Confidence 456666655432 4677778888888875543210112567899999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCcc-cccccCeEEEcccccccccccCCCccceEeEEe
Q psy16096 80 SIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFI 128 (154)
Q Consensus 80 SiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~i 128 (154)
|||||||+|+|||++. .+|+||+|+||+++|+||++++++ + ||++.+
T Consensus 151 AiDiPSGl~~dtG~~~~~av~Ad~Tvtf~~~K~gl~~~~~~-~-~G~v~v 198 (205)
T TIGR00197 151 SVDIPSGLDVDTGAIEGPAVNADLTITFHAIKPCLLSDRAD-V-TGELKV 198 (205)
T ss_pred EEecCCcccCCCCCCCCcceeCCEEEEecCCCchhccCCcc-C-ccEEEE
Confidence 9999999999999988 899999999999999999999999 8 999883
No 5
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-33 Score=218.47 Aligned_cols=123 Identities=26% Similarity=0.383 Sum_probs=101.4
Q ss_pred CcceeEEEEeCCCCh---HHHHHHHHHHHhC-CCceecCCCCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCC
Q psy16096 2 FGYEPEIYYPKPPSK---ELYVNLLHQCKSL-DIPVSESLPAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIP 77 (154)
Q Consensus 2 ~G~~V~v~~~~~~~~---~~~~~~~~~~~~~-g~~~~~~~~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~ 77 (154)
.|++|+|++++++.+ +.++.+++.+... .+.+. +....+.++|+|||||||||++|+++++++++|+.+|++..+
T Consensus 75 ~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~-~~~~~~~~~dvIVDalfG~G~~g~lrep~a~~Ie~iN~~~~p 153 (203)
T COG0062 75 AGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIK-ELEDEPESADVIVDALFGTGLSGPLREPFASLIEAINASGKP 153 (203)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeec-ccccccccCCEEEEeceecCCCCCCccHHHHHHHHHHhcCCc
Confidence 689999999987764 3444433333221 11111 122246789999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCcc-cccccCeEEEcccccccccccCCCccceEeE
Q psy16096 78 VVSIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGR 126 (154)
Q Consensus 78 vvSiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~ 126 (154)
+||||||||+++|||++. .+|+||+||||+.+|+||++++++ .++|.+
T Consensus 154 ivAVDiPSGl~~dtG~~~~~av~Ad~TVTf~~~K~gl~~~~a~-~~~g~~ 202 (203)
T COG0062 154 IVAVDIPSGLDADTGEVLGAAVKADLTVTFGALKPGLLTGPAR-DYVGEL 202 (203)
T ss_pred eEEEeCCCCcCCCCCcccCcceeccEEEEecCcchHhhccccc-cccccc
Confidence 999999999999999998 999999999999999999999999 888764
No 6
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=99.97 E-value=6.6e-32 Score=205.66 Aligned_cols=111 Identities=30% Similarity=0.499 Sum_probs=92.5
Q ss_pred CcceeEEEEeCCC--ChHHHHHHHHHHHhCCCceecCCCC-----CCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcC
Q psy16096 2 FGYEPEIYYPKPP--SKELYVNLLHQCKSLDIPVSESLPA-----ETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKST 74 (154)
Q Consensus 2 ~G~~V~v~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~-----~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~ 74 (154)
+|++|+|+++.+. .+++.+.++++++++++++...... .++++|+|||||||||++++++++++++|+|+|++
T Consensus 51 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlIIDal~G~G~~~~l~~~~~~~i~~iN~~ 130 (169)
T PF03853_consen 51 RGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLIIDALFGTGFSGPLRGPIAELIDWINAS 130 (169)
T ss_dssp TTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEEEEES-STTGGSCGSTCHHHHHHHHHHH
T ss_pred CCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEEEEecccCCCCCCcCHHHHHHHHHHhcc
Confidence 6999999877654 3488999999999999998863221 13479999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCCCCCCCCcc-cccccCeEEEccccccc
Q psy16096 75 KIPVVSIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLC 112 (154)
Q Consensus 75 ~~~vvSiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g 112 (154)
+++++|||||||+|+|||++. .+|+||+|+||+++|+|
T Consensus 131 ~~~viAiDiPSGl~~dtG~~~~~~v~Ad~Tvt~g~~K~G 169 (169)
T PF03853_consen 131 RAPVIAIDIPSGLDADTGEVDGPAVRADYTVTFGAPKPG 169 (169)
T ss_dssp CSEEEEESS-TTCBTTTB-BSSSS---SEEEEESSEEGG
T ss_pred CCcEEEecCCCCccCCCCCcCCCEEEcceeeecCCcCCC
Confidence 999999999999999999998 99999999999999987
No 7
>PRK10565 putative carbohydrate kinase; Provisional
Probab=99.97 E-value=4.3e-31 Score=230.58 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=109.7
Q ss_pred CcceeEEEEeCCCC--hHHHHHHHHHHHhCCCceecCCCCCC-CCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCe
Q psy16096 2 FGYEPEIYYPKPPS--KELYVNLLHQCKSLDIPVSESLPAET-SVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPV 78 (154)
Q Consensus 2 ~G~~V~v~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~l-~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~v 78 (154)
+||+|+||+++++. +++++.++++++++|..+.. ....+ .++|+|||||||||++|+++++++++|+++|+++.++
T Consensus 86 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~dliVDalfGtG~~~~l~~~~~~li~~iN~~~~~v 164 (508)
T PRK10565 86 AGIDVTLLAQESDKPLPEEAALAREAWLNAGGEIHA-ADIVWPESVDLIVDALLGTGLRQAPREPYAALIDQANAHPAPV 164 (508)
T ss_pred CCCceEEEEECCcccCCHHHHHHHHHHHHcCCceec-cccccCCCCcEEEEccccCCCCCCCcHHHHHHHHHHhcCCCCE
Confidence 69999999987654 37778889999999866432 11123 2689999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCcc-cccccCeEEEcccccccccccCCCccceEeEE
Q psy16096 79 VSIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRF 127 (154)
Q Consensus 79 vSiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~ 127 (154)
||||||||+++|||++. .+|+||+|+||+++|+|+++++++ .|||++.
T Consensus 165 vAiDiPSGl~~dtG~~~~~av~Ad~Tvtf~~~K~g~~~~~~~-~~~G~v~ 213 (508)
T PRK10565 165 VALDIPSGLLAETGATPGAVINADHTVTFIALKPGLLTGKAR-DVVGQLH 213 (508)
T ss_pred EEecCCCcccCCCCCCCCceecCCEEEEecccCCcccccchh-hheeeEE
Confidence 99999999999999988 899999999999999999999999 9999999
No 8
>KOG2585|consensus
Probab=99.88 E-value=5.1e-23 Score=174.24 Aligned_cols=152 Identities=45% Similarity=0.898 Sum_probs=129.9
Q ss_pred CcceeEEEEeCCCCh-HHHHHHHHHHHhCCCceecCCC--CC-CCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCC
Q psy16096 2 FGYEPEIYYPKPPSK-ELYVNLLHQCKSLDIPVSESLP--AE-TSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIP 77 (154)
Q Consensus 2 ~G~~V~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~--~~-l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~ 77 (154)
+||.+.||+...+.. +........|..+.++....++ .. .+.+++|||||||..|++++++++..+++|+|+...+
T Consensus 292 ~G~~~vi~~pk~s~~~~~~~~L~~q~~~~~Ip~v~~~~~l~~L~s~~~lVVDAifGfsf~~~~r~~f~~i~~~i~~~~i~ 371 (453)
T KOG2585|consen 292 HGYTPVIYYPKRSLNVDLYKSLVKQCDGFSIPSVSELPSLEDLNSPVELVVDAIFGFSFKPPVRPPFDAIVAWINQNAIP 371 (453)
T ss_pred cCceeEEEeecCccchhHHHHHHHHhcCccccccccCcchhhhCcchhhhhhhhccccccCCcccchhHHHHHHHhccCc
Confidence 689999999887655 5555566667666676665443 22 3789999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCCCccceEeEEeChhhHHhhCCCCCCCCCCccEEecC
Q psy16096 78 VVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFIPKQLEKEYDLNLPPYKGTDTYVKID 153 (154)
Q Consensus 78 vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~iP~~~~~~~~~~~p~~~g~~~~~~~~ 153 (154)
|+|||||||++.++|... ..+.++..+|+++||...-..-|..+|+|+++||+.+++++++.+|.|.|.+.++.|-
T Consensus 372 I~SVDiPsGwdve~G~~s~~~~~~~~p~~lisltaPk~~~~~~~g~~hyLggrgIP~~~~~k~gi~~~~y~G~~~vi~l~ 451 (453)
T KOG2585|consen 372 ILSVDIPSGWDVEKGSPSIGDAKTITPDALISLTAPKPCSKQATGNKHYLGGRGIPQQFYRKYGILYPSYPGTKFVIPLH 451 (453)
T ss_pred eEEecCCCccccccCCcccccccccCcchhhhccCcHHHHHhhcCCceEEccCCCCHHHHHHhccccCCCCCceEEEecC
Confidence 999999999999999655 3456999999999999988877744999999999999999999999999999988764
No 9
>PF04250 DUF429: Protein of unknown function (DUF429); InterPro: IPR007362 This is a family of uncharacterised proteins.
Probab=66.63 E-value=8 Score=29.81 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=24.7
Q ss_pred CchHHHHHHHHhcCCCCeEEEEcCCCCCCCCC
Q psy16096 61 RELFVPVINLFKSTKIPVVSIDIPSGWNVEHG 92 (154)
Q Consensus 61 ~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG 92 (154)
.....++++++.... .+|+||+|-|+..+++
T Consensus 27 ~~~~~~i~~~~~~~~-~~v~IDaPlgl~~~~~ 57 (209)
T PF04250_consen 27 FSSDEEILDWIESAP-AVVGIDAPLGLPNESG 57 (209)
T ss_pred cCCHHHHHHHhhccC-cEEEEEcCcccCCCCC
Confidence 346788999988776 8999999999954555
No 10
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=53.65 E-value=15 Score=31.91 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=55.3
Q ss_pred ccEEEEeeecCCC-CCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCc---c-cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSY-KPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV---E-HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~-~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~---~-~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|++.++|.|- .-++++-++++.+.+++.+...|.=++-+|+- +|.- . ..+++|.+ ||+. ++-.
T Consensus 203 aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R--~G~~ga~~~~gv~PDi~-~~gK---~lgg--- 273 (433)
T PRK00615 203 AGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFR--VAQGGAAAIYHVKPDIT-VYGK---ILGG--- 273 (433)
T ss_pred EEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccccc--ccHhHHHHhcCCCCCeE-EEcc---cccC---
Confidence 5689999999854 44566667888888888888888888889992 4532 2 46789985 5543 3311
Q ss_pred CccceEeEEeChhhHHhh
Q psy16096 119 KHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~ 136 (154)
. .-+|.+..++++.+.+
T Consensus 274 G-~p~~av~~~~~i~~~~ 290 (433)
T PRK00615 274 G-LPAAAVVAHKSIMDHL 290 (433)
T ss_pred C-cceeeeeecHHHHhhh
Confidence 1 1245555677776665
No 11
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=51.20 E-value=21 Score=22.70 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=24.7
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEE
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSID 82 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiD 82 (154)
|.++++..+|.- ....++++.+.+.+.++++|-
T Consensus 49 d~~i~iS~sg~t-~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 49 DVVIALSYSGRT-EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CEEEEEECCCCC-HHHHHHHHHHHHcCCeEEEEe
Confidence 445677777774 446778888888889999885
No 12
>COG2090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.53 E-value=18 Score=26.88 Aligned_cols=42 Identities=24% Similarity=0.190 Sum_probs=32.8
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCC
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVE 90 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~d 90 (154)
|||.|++....++..-.++.+.+++.+...+-|++|-.+|--
T Consensus 36 DCIIgi~Adk~~~dlse~fk~~~r~~~~i~vvi~~~~~~D~v 77 (141)
T COG2090 36 DCIIGISADKALRDLSEEFKAALRRGKRIRVVIRVGGLVDEV 77 (141)
T ss_pred CEEEEEccCCChhHhhHHHHHHHhCCCeEEEEEEcCCcEEEE
Confidence 677899999888877777777888887788999999555433
No 13
>PRK12452 cardiolipin synthetase; Reviewed
Probab=48.78 E-value=42 Score=29.89 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=32.6
Q ss_pred CCcceeEEEEeCCCCh----HHHHHHHHHHHhCCCceecCCCCCCCCccEEEEe
Q psy16096 1 MFGYEPEIYYPKPPSK----ELYVNLLHQCKSLDIPVSESLPAETSVFHLIVDA 50 (154)
Q Consensus 1 ~~G~~V~v~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~l~~~dlIVDa 50 (154)
++|.+|++.+.+.+.+ ...+.+++.+.+.|+++....+.-+...-+|||.
T Consensus 382 ~rGV~Vrii~p~~~D~~~~~~a~~~~~~~L~~aGv~I~~y~~~~lHaK~~ivD~ 435 (509)
T PRK12452 382 ISGIDVRILYPGKSDSIISDQASQSYFTPLLKAGASIYSYKDGFMHAKIVLVDD 435 (509)
T ss_pred HcCCEEEEEcCCCCChHHHHHHHHHHHHHHHHcCCEEEEecCCCeeeeEEEECC
Confidence 3699999998876544 2244557788889999865222223445578885
No 14
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=47.34 E-value=26 Score=30.86 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=54.1
Q ss_pred ccEEEEeeecCCCC-CCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc--cccccCeEEEcccccccccccCCCc
Q psy16096 44 FHLIVDAIFGFSYK-PPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE--HKYQPHTLISLTAPKLCAHKFEGKH 120 (154)
Q Consensus 44 ~dlIVDalfGtG~~-~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~--~~v~Ad~Tvtf~~~K~g~~~~~g~~ 120 (154)
+-+|++.++|.|-- -++++-++.+.+.+.+.+...|.=+|-+|+-...+-.. ..+++|. +||+..--|= +|
T Consensus 248 AavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi-~t~gK~lggG--~P--- 321 (474)
T PLN02482 248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDL-TTLGKVIGGG--LP--- 321 (474)
T ss_pred EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCE-EEecchhhCC--Cc---
Confidence 56899999998654 44566677777888888887777778899854433222 4688997 5665432221 11
Q ss_pred cceEeEEeChhhHHhh
Q psy16096 121 HFLGGRFIPKQLEKEY 136 (154)
Q Consensus 121 ~~~g~~~iP~~~~~~~ 136 (154)
+|.+...+++.+.+
T Consensus 322 --igav~g~~ei~~~~ 335 (474)
T PLN02482 322 --VGAYGGRREIMEMV 335 (474)
T ss_pred --eEEEEEcHHHHHhh
Confidence 34444456666554
No 15
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=46.20 E-value=26 Score=24.17 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=52.0
Q ss_pred EEEeCCCCh-HHHHHHHHHHHhCCCceecC-----CC---CCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCe
Q psy16096 8 IYYPKPPSK-ELYVNLLHQCKSLDIPVSES-----LP---AETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPV 78 (154)
Q Consensus 8 v~~~~~~~~-~~~~~~~~~~~~~g~~~~~~-----~~---~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~v 78 (154)
|++.+...+ ..+......+..+|.+.... .. ..+.+- |.++.++.+|.- .+..++++.+.+.+.++
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~----d~vi~iS~sG~t-~~~~~~~~~a~~~g~~v 77 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPG----DVVIAISNSGET-DELLNLLPHLKRRGAPI 77 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCC----CEEEEEeCCCCC-HHHHHHHHHHHHCCCeE
Confidence 455554433 33333444556667655431 01 112334 446788888874 44556788888888999
Q ss_pred EEEEcCCCCCCCCCCcccccccCeEEEcccccc
Q psy16096 79 VSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKL 111 (154)
Q Consensus 79 vSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~ 111 (154)
++|==..+ .. .+=.||+++.....+.
T Consensus 78 i~iT~~~~-----s~--la~~ad~~l~~~~~~~ 103 (128)
T cd05014 78 IAITGNPN-----ST--LAKLSDVVLDLPVEEE 103 (128)
T ss_pred EEEeCCCC-----Cc--hhhhCCEEEECCCCcc
Confidence 98832111 11 2335888888766554
No 16
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=45.04 E-value=52 Score=29.03 Aligned_cols=65 Identities=17% Similarity=0.348 Sum_probs=50.8
Q ss_pred CCccEEEEeeecC-CCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEccc
Q psy16096 42 SVFHLIVDAIFGF-SYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTA 108 (154)
Q Consensus 42 ~~~dlIVDalfGt-G~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~ 108 (154)
+-+-+|++-|+|. |+.-++++-++.+-+++.+.+...|+=+|-||+- -||... ..|.+|.+ ||+.
T Consensus 222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~G-RTG~~fa~E~~gv~PDiv-t~aK 291 (447)
T COG0160 222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFG-RTGKMFAFEHFGVEPDIV-TLAK 291 (447)
T ss_pred ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC-ccccchhhhhcCCCCCEE-Eecc
Confidence 3578999999995 5556677778888888899999999999999975 778543 57889975 4544
No 17
>PF11613 UCN2: Agonist of corticotropin releasing factor R2, Urocortin-2; InterPro: IPR024270 This entry represents urocortin II and III, which are members of the corticotropin-releasing factor (CRF) family of neuropeptides. Urocortin II and III are secreted peptides and bind with high affinity to CRF receptors 2-alpha and 2-beta. They are involved in the suppression of food intake, the delay of gastric emptying, and may represent endogenous ligands for maintaining homeostasis after stress. Their backbone is mainly alpha-helical, but contains a helix-loop-helix motif [].; GO: 0051431 corticotropin-releasing hormone receptor 2 binding, 0006950 response to stress, 0007586 digestion, 0005615 extracellular space; PDB: 2RMH_A 3N93_C 3N95_F 2RMG_A.
Probab=44.90 E-value=1.6 Score=24.97 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=6.9
Q ss_pred eEEEEcCCCC
Q psy16096 78 VVSIDIPSGW 87 (154)
Q Consensus 78 vvSiDiPSGl 87 (154)
.+|+|+|.|+
T Consensus 2 tLSLDVPt~i 11 (38)
T PF11613_consen 2 TLSLDVPTNI 11 (38)
T ss_dssp GCG-STTHHH
T ss_pred eeeecCchhH
Confidence 4688999875
No 18
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=43.98 E-value=46 Score=28.87 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=55.5
Q ss_pred ccEEEEeeecCCCCCCC-CchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKPPL-RELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~l-~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|++.++|.|-...+ ++-+..+.+.+.+.+...|.=++-+|+ +-||... ..+++|. +||+..=.| |
T Consensus 217 aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~-GrtG~~~a~~~~gv~PDi-vt~gK~l~g-----G 289 (442)
T PRK13360 217 AAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGF-GRLGAPFAAQYFGVTPDL-LTCAKGLTN-----G 289 (442)
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC-CCCccchhhhhcCCCCce-eeeeecccc-----C
Confidence 46899999998765544 455666667777888888877888998 4666532 4678885 455432211 1
Q ss_pred CccceEeEEeChhhHHhhC
Q psy16096 119 KHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~ 137 (154)
. --+|.+...+++.+.+.
T Consensus 290 ~-~P~gav~~~~~i~~~~~ 307 (442)
T PRK13360 290 A-IPMGAVFVSSEIHDAFM 307 (442)
T ss_pred c-cceEEEEEcHHHHHHhh
Confidence 1 11466667777766543
No 19
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=43.09 E-value=57 Score=27.07 Aligned_cols=84 Identities=14% Similarity=0.233 Sum_probs=58.4
Q ss_pred ccEEEEeeecCC-CCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFS-YKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG-~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+||+-+.|.| ...+.++-++.+.+.+.+.+..+|.=.|-+|+- -||... ..+++|. +||+..-.|-
T Consensus 179 aavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~g-RtG~~~a~~~~gv~PDi-v~~gK~l~gG----- 251 (339)
T PF00202_consen 179 AAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFG-RTGKFFASEHYGVDPDI-VTFGKGLGGG----- 251 (339)
T ss_dssp EEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTT-TTSSSSGHHHHTSSSSE-EEEEGGGGTT-----
T ss_pred EEEEEeccccccCccccccchhhehcccccccccceeccccccccc-ccCCccceecccccCcc-cccccchhhh-----
Confidence 569999999985 444556677888888899999999999999983 455432 6799999 6776433332
Q ss_pred CccceEeEEeChhhHHhh
Q psy16096 119 KHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~ 136 (154)
- -++.+...+++.+.+
T Consensus 252 ~--p~sav~~~~~i~~~~ 267 (339)
T PF00202_consen 252 L--PISAVLGSEEIMEAF 267 (339)
T ss_dssp S--SEEEEEEEHHHHTTS
T ss_pred h--hcccccccchhhccc
Confidence 1 345566667766654
No 20
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=42.78 E-value=50 Score=29.07 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=46.4
Q ss_pred ccEEEEeeecCCCCCC-CCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccc--cCeEEEcccc
Q psy16096 44 FHLIVDAIFGFSYKPP-LRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQ--PHTLISLTAP 109 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~-l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~--Ad~Tvtf~~~ 109 (154)
+.+|++.++|.|--.+ .++-+..+-+.+.+.+...|.=+|-+|+ .-||... ..|. +|. +||+..
T Consensus 253 AAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGf-GrtG~~fa~e~~gv~~~PDi-~t~gK~ 323 (464)
T TIGR00699 253 AAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGV-GATGKFWAHEHWNLDDPPDM-VTFSKK 323 (464)
T ss_pred EEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCC-CCCcchhHHHhcCCCCCCCE-EEehhh
Confidence 6689999999965544 4556677777778888888888899999 4577532 3454 998 666543
No 21
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=42.61 E-value=44 Score=29.16 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=47.0
Q ss_pred ccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCc---c-cccccCeEE
Q psy16096 44 FHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV---E-HKYQPHTLI 104 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~---~-~~v~Ad~Tv 104 (154)
+-+|++.++|.|..-+..+-+.++-+.+++.+...|.=+|-+|+. -||.. . ..+++|.++
T Consensus 231 AavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~G-RtG~~fa~e~~gv~PDiv~ 294 (459)
T PRK06082 231 GAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMG-RTGEWFTHQAYGIEPDILC 294 (459)
T ss_pred EEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCC-ccchhhHhHhhCCCCCEEE
Confidence 678999999998656666778888888888888888888999973 47743 2 578999764
No 22
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=41.01 E-value=51 Score=28.42 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=56.6
Q ss_pred ccEEEEee-ecCCCC-CCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccC
Q psy16096 44 FHLIVDAI-FGFSYK-PPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFE 117 (154)
Q Consensus 44 ~dlIVDal-fGtG~~-~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~ 117 (154)
+.+|+.-+ .|.|-- -+..+.++++-+.+++.+...|.=+|-+|+ .-||... ..+++|.+ ||+..-.|
T Consensus 202 AAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~-GrtG~~~a~~~~gv~PDi~-t~gK~l~g----- 274 (422)
T PRK05630 202 AAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGF-GRTGELFATLAAGVTPDIM-CVGKALTG----- 274 (422)
T ss_pred EEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCC-CcCchhhHHHhcCCCCCee-eeechhhc-----
Confidence 45788886 887544 455677888888889888888888899999 6688643 46889977 66542222
Q ss_pred CCccceEeEEeChhhHHhh
Q psy16096 118 GKHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 118 g~~~~~g~~~iP~~~~~~~ 136 (154)
|- .-+|.+..++++.+.+
T Consensus 275 G~-~p~~av~~~~~i~~~~ 292 (422)
T PRK05630 275 GF-MSFAATLCTDKVAQLI 292 (422)
T ss_pred Cc-cccceeeccHHHHHHH
Confidence 11 1134445566666554
No 23
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=40.38 E-value=63 Score=28.41 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=33.5
Q ss_pred CCcceeEEEEeCCCCh----HHHHHHHHHHHhCCCceecCCCCCCCCccEEEE---eeecC
Q psy16096 1 MFGYEPEIYYPKPPSK----ELYVNLLHQCKSLDIPVSESLPAETSVFHLIVD---AIFGF 54 (154)
Q Consensus 1 ~~G~~V~v~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~l~~~dlIVD---alfGt 54 (154)
++|.+|++++.+.+.+ ...+.+++.+.+.|+++...-+.-+...-+||| ++.|+
T Consensus 356 ~rGV~Vril~p~~~d~~~~~~~~~~~~~~L~~~Gv~I~~y~~~~~HaK~~ivD~~~~~vGS 416 (483)
T PRK01642 356 LRGVDVRIIIPSKNDSLLVFWASRAFFTELLEAGVKIYRYEGGLLHTKSVLVDDELALVGT 416 (483)
T ss_pred HcCCEEEEEeCCCCCcHHHHHHHHHHHHHHHHcCCEEEEeCCCceEeEEEEECCCEEEeeC
Confidence 3699999998876544 234445677778898876421211233457888 46664
No 24
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.14 E-value=35 Score=23.49 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=35.0
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcccccccCeEEEcccc
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAP 109 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~ 109 (154)
|.++++..+|.-++ ..++++.+++.++++++|==.. + . ..+=.||+++.....
T Consensus 48 d~~I~iS~sG~t~e-~~~~~~~a~~~g~~vi~iT~~~----~--s-~la~~ad~~l~~~~~ 100 (126)
T cd05008 48 TLVIAISQSGETAD-TLAALRLAKEKGAKTVAITNVV----G--S-TLAREADYVLYLRAG 100 (126)
T ss_pred cEEEEEeCCcCCHH-HHHHHHHHHHcCCeEEEEECCC----C--C-hHHHhCCEEEEecCC
Confidence 34677888888554 6678888888889999873221 1 1 123457888877653
No 25
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.92 E-value=39 Score=23.53 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=24.8
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEE
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSI 81 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSi 81 (154)
|.++++..+|. ..+..++++.+++.+.++++|
T Consensus 49 dl~I~iS~SG~-t~~~~~~~~~a~~~g~~vi~i 80 (120)
T cd05710 49 SVVILASHSGN-TKETVAAAKFAKEKGATVIGL 80 (120)
T ss_pred cEEEEEeCCCC-ChHHHHHHHHHHHcCCeEEEE
Confidence 66788888887 445566888888888888886
No 26
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=39.73 E-value=87 Score=25.46 Aligned_cols=91 Identities=9% Similarity=0.072 Sum_probs=53.3
Q ss_pred EEEEeCCCCh-HHHHHHHHHHHhCCCceec--C---C--C-CCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCC
Q psy16096 7 EIYYPKPPSK-ELYVNLLHQCKSLDIPVSE--S---L--P-AETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIP 77 (154)
Q Consensus 7 ~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~---~--~-~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~ 77 (154)
+|++.|...+ ..++.....+...|.+... . . . ..+.+- |.++++..+|.- ....++++.+.+.+.+
T Consensus 44 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~----d~~i~iS~sG~t-~~~~~~~~~ak~~g~~ 118 (321)
T PRK11543 44 KVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESR----DVMLFISYSGGA-KELDLIIPRLEDKSIA 118 (321)
T ss_pred cEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCC----CEEEEEeCCCCc-HHHHHHHHHHHHcCCe
Confidence 3555554444 3344444566667776542 1 0 0 123344 456778888874 4466788888888999
Q ss_pred eEEEEcCCCCCCCCCCcccccccCeEEEcccc
Q psy16096 78 VVSIDIPSGWNVEHGPVEHKYQPHTLISLTAP 109 (154)
Q Consensus 78 vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~ 109 (154)
+++|==... ...+=.||+++.....
T Consensus 119 vI~iT~~~~-------s~la~~ad~~l~~~~~ 143 (321)
T PRK11543 119 LLAMTGKPT-------SPLGLAAKAVLDISVE 143 (321)
T ss_pred EEEEECCCC-------ChhHHhCCEEEEcCCc
Confidence 999832111 0145578888877653
No 27
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=37.82 E-value=1.7e+02 Score=21.68 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=54.9
Q ss_pred EEEEeCCCCh-HHHHHHHHHHHhCCCceec--CC-CCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEE
Q psy16096 7 EIYYPKPPSK-ELYVNLLHQCKSLDIPVSE--SL-PAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSID 82 (154)
Q Consensus 7 ~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~-~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiD 82 (154)
+|++.|...+ ..++.....+...|.+... +. ...+.+-|+ ++++.++|.-++. .++++.+.+.+.++++|=
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~----vI~iS~sG~t~~~-i~~~~~ak~~g~~iI~IT 109 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDL----LIAISGSGETSSV-VNAAEKAKKAGAKVVLIT 109 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCE----EEEEcCCCCcHHH-HHHHHHHHHCCCeEEEEE
Confidence 3555554433 3334444456667766543 11 112344444 5788888885554 567888888899999983
Q ss_pred cCCCCCCCCCCcccccccCeEEEcccccccc
Q psy16096 83 IPSGWNVEHGPVEHKYQPHTLISLTAPKLCA 113 (154)
Q Consensus 83 iPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g~ 113 (154)
=..+ . ..+=.||+++.....+...
T Consensus 110 ~~~~------s-~la~~ad~~l~~~~~~~~~ 133 (179)
T cd05005 110 SNPD------S-PLAKLADVVVVIPAATKDD 133 (179)
T ss_pred CCCC------C-chHHhCCEEEEeCCccccc
Confidence 2221 1 1234688888776655443
No 28
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=36.82 E-value=69 Score=27.14 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=60.7
Q ss_pred ccEEEEeeecCCCCCC-CCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKPP-LRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~-l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+||+.++|+|--.+ .++.++++.+.+.+.+..+|.=++=+|+ .-+|... ..+.+|. +||+. ++- .|
T Consensus 185 aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~-gr~G~~~~~~~~~v~pDi-~t~sK---~l~--gG 257 (406)
T PRK12381 185 CAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGV-GRTGELYAYMHYGVTPDV-LTTAK---ALG--GG 257 (406)
T ss_pred eEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCC-CCCcchhhhHhhCCCCCE-EEehh---hhh--CC
Confidence 5689999999987554 5778889999999988888887787998 4566432 3467785 56653 332 23
Q ss_pred CccceEeEEeChhhHHhhC
Q psy16096 119 KHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~ 137 (154)
- -+|.+..|+++++.+.
T Consensus 258 ~--~ig~~~~~~~~~~~~~ 274 (406)
T PRK12381 258 F--PIGAMLTTEKCASVMT 274 (406)
T ss_pred C--ceEEEEEcHHHHhhcC
Confidence 2 4577777888887664
No 29
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=35.19 E-value=61 Score=28.36 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=55.9
Q ss_pred ccEEEEeeecCCCCC-CCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCc---c-cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKP-PLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV---E-HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~-~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~---~-~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|++.++|.|-.- +.++-++.+.+.+.+.+...|+=+|=+|+ +-||.. . ..+++|.. ||+..=-|=+.
T Consensus 233 AavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~-GRtG~~~a~e~~gv~PDiv-t~gK~lggG~~--- 307 (459)
T PRK11522 233 AAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGM-GRTGKMFACEHENVQPDIL-CLAKALGGGVM--- 307 (459)
T ss_pred EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecC-CccchhhhhhccCCCCCEE-EechhhhCCCc---
Confidence 568999999997554 45556777888888888888877888997 457753 1 56789964 66543222111
Q ss_pred CccceEeEEeChhhHHhh
Q psy16096 119 KHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~ 136 (154)
-+|.+...+++.+.+
T Consensus 308 ---Pigav~~~~~i~~~~ 322 (459)
T PRK11522 308 ---PIGATIATEEVFSVL 322 (459)
T ss_pred ---cceeEEEcHHHHHHh
Confidence 135555566666654
No 30
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=34.07 E-value=20 Score=31.68 Aligned_cols=83 Identities=19% Similarity=0.145 Sum_probs=55.9
Q ss_pred CCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc------cccccCeEEEccccccccc
Q psy16096 41 TSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE------HKYQPHTLISLTAPKLCAH 114 (154)
Q Consensus 41 l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~------~~v~Ad~Tvtf~~~K~g~~ 114 (154)
...++=+|=.|||||.++.--+++. .+++..+.-+.-+.|+=+|++.|... +..+-|..+.-..+++|+.
T Consensus 216 yt~~~~~iG~IfGTGtN~~y~e~~~----~ipkl~~d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~ 291 (466)
T COG5026 216 YTSSETIIGIIFGTGTNGCYCEPKG----RIPKLPRDDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQ 291 (466)
T ss_pred hcCCCCeEEEEEecCccceEEeecc----cCCcCccccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchH
Confidence 3457789999999999997444332 23443344455566666777777442 4567799999999999998
Q ss_pred ccCCCc--cceEeEE
Q psy16096 115 KFEGKH--HFLGGRF 127 (154)
Q Consensus 115 ~~~g~~--~~~g~~~ 127 (154)
.++-.. -|+|++.
T Consensus 292 ~~Ek~~sG~yLGell 306 (466)
T COG5026 292 IFEKMSSGMYLGELL 306 (466)
T ss_pred HHhhhhcceeHHHHH
Confidence 875431 4556654
No 31
>PRK11263 cardiolipin synthase 2; Provisional
Probab=34.02 E-value=85 Score=27.17 Aligned_cols=50 Identities=10% Similarity=-0.073 Sum_probs=32.0
Q ss_pred CCcceeEEEEeCCCCh----HHHHHHHHHHHhCCCceecCCCCCCCCccEEEEe
Q psy16096 1 MFGYEPEIYYPKPPSK----ELYVNLLHQCKSLDIPVSESLPAETSVFHLIVDA 50 (154)
Q Consensus 1 ~~G~~V~v~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~l~~~dlIVDa 50 (154)
++|.+|++++.+.+.. ...+..+..+.+.|+++.......+-..-++||.
T Consensus 244 ~RGV~V~ii~~~~~d~~~~~~a~~~~~~~Ll~~Gv~I~~y~~~~lHaK~~viD~ 297 (411)
T PRK11263 244 RRGVRVRLILQGEPDMPIVRVGARLLYNYLLKGGVQIYEYCRRPLHGKVALMDD 297 (411)
T ss_pred HCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHHCCCEEEEecCCCceeEEEEECC
Confidence 3699999999876654 2344557788889998864222223334466665
No 32
>PRK05443 polyphosphate kinase; Provisional
Probab=33.40 E-value=1.2e+02 Score=28.23 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=25.0
Q ss_pred CCcceeEEEEeCCCC--hHHHHHHHHHHHhCCCceecC
Q psy16096 1 MFGYEPEIYYPKPPS--KELYVNLLHQCKSLDIPVSES 36 (154)
Q Consensus 1 ~~G~~V~v~~~~~~~--~~~~~~~~~~~~~~g~~~~~~ 36 (154)
+.|.+|+|+...... ++......+.+++.|+.+...
T Consensus 391 ~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~ 428 (691)
T PRK05443 391 ENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYG 428 (691)
T ss_pred HcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEc
Confidence 369999999875542 234445567888899998653
No 33
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=32.98 E-value=2.1e+02 Score=21.81 Aligned_cols=34 Identities=41% Similarity=0.412 Sum_probs=22.0
Q ss_pred EEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcC
Q psy16096 48 VDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIP 84 (154)
Q Consensus 48 VDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiP 84 (154)
+|||...+... ..+...++.+++.+.|++.+|-+
T Consensus 61 vdgiIi~~~~~---~~~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 61 VDAIIINPASP---TALNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred CCEEEEeCCCh---hhhHHHHHHHHHCCCeEEEEecC
Confidence 56666655332 22345667777778899999864
No 34
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.65 E-value=58 Score=26.50 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=27.7
Q ss_pred CcceeEEEEeCCCCh----HHHHHHHHHHHhCCCce-------------ecCCCCCCCCccEEEEeee
Q psy16096 2 FGYEPEIYYPKPPSK----ELYVNLLHQCKSLDIPV-------------SESLPAETSVFHLIVDAIF 52 (154)
Q Consensus 2 ~G~~V~v~~~~~~~~----~~~~~~~~~~~~~g~~~-------------~~~~~~~l~~~dlIVDalf 52 (154)
.|++|.++-..+..- +..++.++.+.+.|... ..+. +.++++|+||+|++
T Consensus 27 ~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~d~ViEav~ 93 (286)
T PRK07819 27 AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADRQLVIEAVV 93 (286)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCCCEEEEecc
Confidence 588898887654321 12223344444444321 1122 23678999999985
No 35
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=32.56 E-value=2.4e+02 Score=22.00 Aligned_cols=90 Identities=8% Similarity=0.028 Sum_probs=52.2
Q ss_pred EEEeCCCCh-HHHHHHHHHHHhCCCceec--C--C----CCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCe
Q psy16096 8 IYYPKPPSK-ELYVNLLHQCKSLDIPVSE--S--L----PAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPV 78 (154)
Q Consensus 8 v~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~--~----~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~v 78 (154)
|++.+...+ ..++.....+..+|..... + . ...+.+- |.++++.++|. ..+..++++.+.+.+.++
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~----d~~i~iS~sG~-t~~~~~~~~~a~~~g~~i 77 (268)
T TIGR00393 3 LVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPN----DVVLMISYSGE-SLELLNLIPHLKRLSHKI 77 (268)
T ss_pred EEEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCC----CEEEEEeCCCC-CHHHHHHHHHHHHcCCcE
Confidence 455554433 3344445566677876542 1 0 0123334 55788899987 555667888888888999
Q ss_pred EEEEcCCCCCCCCCCcccccccCeEEEcccc
Q psy16096 79 VSIDIPSGWNVEHGPVEHKYQPHTLISLTAP 109 (154)
Q Consensus 79 vSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~ 109 (154)
++|==... . ..+-.||+.+.....
T Consensus 78 i~iT~~~~-----s--~l~~~~d~~l~~~~~ 101 (268)
T TIGR00393 78 IAFTGSPN-----S--SLARAADYVLDIKVE 101 (268)
T ss_pred EEEECCCC-----C--cccccCCEEEEcCCC
Confidence 98832211 0 123357877777544
No 36
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=32.46 E-value=79 Score=27.14 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=53.2
Q ss_pred ccEEEEeeecCCCCCC-CCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCC-cc-cccccCeEEEcccccccccccCCCc
Q psy16096 44 FHLIVDAIFGFSYKPP-LRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGP-VE-HKYQPHTLISLTAPKLCAHKFEGKH 120 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~-l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~-~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~ 120 (154)
+-+|++.++|.|-.-+ .++-++++-+.+.+.+...+.=+|-+|+-...+- .. ..+++|. +||+..-.|= +
T Consensus 202 aavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDi-vt~gK~lggG--~---- 274 (428)
T PRK12389 202 AAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDL-TALGKIIGGG--L---- 274 (428)
T ss_pred EEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCe-eeechhhcCC--C----
Confidence 5689999999865444 4555677777778888878888899998332221 12 4689997 4665432221 1
Q ss_pred cceEeEEeChhhHHhh
Q psy16096 121 HFLGGRFIPKQLEKEY 136 (154)
Q Consensus 121 ~~~g~~~iP~~~~~~~ 136 (154)
-+|.+...+++.+.+
T Consensus 275 -Pi~av~~~~~i~~~~ 289 (428)
T PRK12389 275 -PIGAYGGRKDIMEQV 289 (428)
T ss_pred -ceeEEeEHHHHHhhh
Confidence 134455566766655
No 37
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=31.76 E-value=3e+02 Score=22.77 Aligned_cols=86 Identities=14% Similarity=0.248 Sum_probs=56.2
Q ss_pred ccEEEEeeecCCCC-CCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYK-PPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~-~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-++++.+.|.+-. -+..+.+.++.+.+.+.+..++.=++-+|+. .+|... ..+.+|. +||+. ++ .+|
T Consensus 167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g-~~g~~~~~~~~~~~pdi-~t~sK---~l--~~G 239 (375)
T PRK04260 167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMG-RTGKLYAFEHYGIEPDI-FTLAK---GL--ANG 239 (375)
T ss_pred EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCC-cccchhhhHhhCCCCCE-EEecc---cc--cCC
Confidence 45788888887533 3445668888888888878888777878874 355331 3467784 46643 33 233
Q ss_pred CccceEeEEeChhhHHhhCC
Q psy16096 119 KHHFLGGRFIPKQLEKEYDL 138 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~~ 138 (154)
- -+|-+..|+++.+.+..
T Consensus 240 ~--~ig~~~~~~~~~~~~~~ 257 (375)
T PRK04260 240 V--PVGAMLAKSSLGGAFGY 257 (375)
T ss_pred c--ceEEEEEcHHHHhhcCC
Confidence 3 35777788888776643
No 38
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=29.14 E-value=95 Score=26.60 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=56.3
Q ss_pred ccEEEEeeecCCCC-CCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYK-PPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~-~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|++.++|.|-- -+.++.+.++.+.+.+.+..+|+=||=+|+ +-||... ..+.+|. +||+ | ++- ..|
T Consensus 200 aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~-GrtG~~~~~~~~~v~PDi-~t~~--K-~l~-~~G 273 (425)
T PRK09264 200 AAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGC-GRTGTFFSFERAGITPDI-VTLS--K-SIS-GYG 273 (425)
T ss_pred EEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCC-ccccHHHHHhhcCCCCCE-EEec--c-ccC-CCc
Confidence 46899999997644 456778899999999998888988999996 3466432 4578895 5665 4 442 112
Q ss_pred CccceEeEEeChhh
Q psy16096 119 KHHFLGGRFIPKQL 132 (154)
Q Consensus 119 ~~~~~g~~~iP~~~ 132 (154)
- -+|.+..|+++
T Consensus 274 ~--pigav~~~~~i 285 (425)
T PRK09264 274 L--PMALVLIKPEL 285 (425)
T ss_pred c--ceEEEEEchhh
Confidence 2 34666677765
No 39
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=28.73 E-value=52 Score=26.63 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=24.3
Q ss_pred CCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy16096 59 PLRELFVPVINLFKSTKIPVVSIDIPS 85 (154)
Q Consensus 59 ~l~~~~~~li~~iN~~~~~vvSiDiPS 85 (154)
=.|+.++++++.+++.++.+|.+||.=
T Consensus 61 w~R~~~A~ll~~L~~~ga~~I~~Di~f 87 (310)
T PF05226_consen 61 WPRSVYARLLDRLAAAGAKAIGFDILF 87 (310)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEeee
Confidence 367889999999999999999999975
No 40
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=28.67 E-value=67 Score=23.80 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=37.7
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcccccccCeEEEcccccccc
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLCA 113 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g~ 113 (154)
|.++++..+|. .....++++++.+.+.++|+|==.++ .. .+=.||+++.+....++.
T Consensus 103 Dv~I~iS~SG~-t~~~i~~~~~ak~~Ga~vI~IT~~~~------s~-La~~aD~~l~~~~~~~~~ 159 (177)
T cd05006 103 DVLIGISTSGN-SPNVLKALEAAKERGMKTIALTGRDG------GK-LLELADIEIHVPSDDTPR 159 (177)
T ss_pred CEEEEEeCCCC-CHHHHHHHHHHHHCCCEEEEEeCCCC------Cc-hhhhCCEEEEeCCCChHH
Confidence 44678888887 44566688888888999999832211 11 233588888877665554
No 41
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=28.17 E-value=1.2e+02 Score=25.78 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=45.9
Q ss_pred ccEEEEeeecCCCCCC-CCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCc---c-cccccCeEEEcc
Q psy16096 44 FHLIVDAIFGFSYKPP-LRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV---E-HKYQPHTLISLT 107 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~-l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~---~-~~v~Ad~Tvtf~ 107 (154)
+-+|++.++|.|--.+ .++.+.++.+.+.+.+..++.=++=+|+ +-||.- . ..+++|. +||+
T Consensus 181 aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~-GRtG~~~a~~~~gv~PDi-~t~g 247 (395)
T PRK03715 181 VAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGC-GRTGTLFAYELSGIEPDI-MTLG 247 (395)
T ss_pred eEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC-CCCcchhhHhhcCCCCce-eeeh
Confidence 4589999999876654 4566777878888888777777788996 457763 2 4678996 6776
No 42
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.06 E-value=73 Score=22.00 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=23.6
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEE
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSID 82 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiD 82 (154)
|.++++..+|.-++ ..++++.+.+.+.++++|=
T Consensus 45 dl~I~iS~SG~t~e-~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 45 TLVIAVSYSGNTEE-TLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CEEEEEECCCCCHH-HHHHHHHHHHCCCEEEEEe
Confidence 45677888887444 4557777777788888875
No 43
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=27.73 E-value=69 Score=25.95 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=58.0
Q ss_pred EEEeCCCCh-HHHHHHHHHHHhCCCceec--CC--C----CCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCe
Q psy16096 8 IYYPKPPSK-ELYVNLLHQCKSLDIPVSE--SL--P----AETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPV 78 (154)
Q Consensus 8 v~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~--~----~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~v 78 (154)
|++.|...+ ..+......|..+|.+... +. . ..+.+-|+ ++++.++|.-+ +..++.+.+-+.++++
T Consensus 133 I~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv----~i~iS~sG~t~-e~i~~a~~ak~~ga~v 207 (281)
T COG1737 133 IYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDV----VIAISFSGYTR-EIVEAAELAKERGAKV 207 (281)
T ss_pred EEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCE----EEEEeCCCCcH-HHHHHHHHHHHCCCcE
Confidence 455554444 4445555677778877654 10 0 12445554 57889998844 4455677777788999
Q ss_pred EEEEcCCCCCCCCCCcccccccCeEEEcccccccccc
Q psy16096 79 VSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLCAHK 115 (154)
Q Consensus 79 vSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g~~~ 115 (154)
|+|==..+ ++ .+=.||+++.........+.
T Consensus 208 IaiT~~~~------sp-la~~Ad~~L~~~~~~~~~~~ 237 (281)
T COG1737 208 IAITDSAD------SP-LAKLADIVLLVPVAEESFFR 237 (281)
T ss_pred EEEcCCCC------Cc-hhhhhceEEeccCccccchh
Confidence 99832221 11 35578888888766655544
No 44
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=27.65 E-value=2.5e+02 Score=20.61 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=54.0
Q ss_pred EEEEeCCCCh-HHHHHHHHHHHhCCCceec--CC-CCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEE
Q psy16096 7 EIYYPKPPSK-ELYVNLLHQCKSLDIPVSE--SL-PAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSID 82 (154)
Q Consensus 7 ~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~-~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiD 82 (154)
.|++.|...+ ..++.....+...|..... +. ...+.+-|+ ++.+..+|. .....++++.+++.+.++++|=
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv----~I~iS~sG~-t~~~i~~~~~ak~~g~~ii~IT 106 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDL----LIAISGSGE-TESLVTVAKKAKEIGATVAAIT 106 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCE----EEEEeCCCC-cHHHHHHHHHHHHCCCeEEEEE
Confidence 4555554433 3333344456666765543 11 112444544 566777776 4455668888888899999983
Q ss_pred cCCCCCCCCCCcccccccCeEEEcccccccc
Q psy16096 83 IPSGWNVEHGPVEHKYQPHTLISLTAPKLCA 113 (154)
Q Consensus 83 iPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g~ 113 (154)
=..+ . ..+=.||+++.....+...
T Consensus 107 ~~~~------s-~la~~ad~~l~~~~~~~~~ 130 (179)
T TIGR03127 107 TNPE------S-TLGKLADVVVEIPAATKKD 130 (179)
T ss_pred CCCC------C-chHHhCCEEEEeCCccccC
Confidence 2111 0 1344688888877655443
No 45
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=27.44 E-value=82 Score=27.96 Aligned_cols=86 Identities=14% Similarity=0.257 Sum_probs=56.5
Q ss_pred ccEEEEeeecCCCCC-CCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCc---c-cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKP-PLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV---E-HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~-~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~---~-~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|++.++|.|--- +.++-+.++.+.+.+.+...|+=+|-+|+-- ||.. . ..+++|. +||+..=.|=+. |
T Consensus 262 AAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGR-tG~~~a~e~~gv~PDi-vtlgK~lggG~~-P- 337 (504)
T PLN02760 262 AAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGR-LGTMFGCDKYNIKPDL-VSLAKALSSAYM-P- 337 (504)
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcc-cchhhHHHhcCCCCcE-EEecccccCCcc-c-
Confidence 568999999986443 4556677777777888888888889999842 4532 1 4678994 677543222111 1
Q ss_pred CccceEeEEeChhhHHhhC
Q psy16096 119 KHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~ 137 (154)
+|.+...+++.+.+.
T Consensus 338 ----igAv~~~~~i~d~~~ 352 (504)
T PLN02760 338 ----IGAVLVSPEISDVIH 352 (504)
T ss_pred ----cceEeecHHHHhhhh
Confidence 355666777776553
No 46
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=26.93 E-value=1.2e+02 Score=25.88 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=22.8
Q ss_pred CCCCCccEEEEeeecCCCCCCCCchHHHHHHHHh
Q psy16096 39 AETSVFHLIVDAIFGFSYKPPLRELFVPVINLFK 72 (154)
Q Consensus 39 ~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN 72 (154)
+.+..+|++|-|++=.|-+-| +=-.++++..+.
T Consensus 227 e~v~~aDlvIgaVLIpgakaP-kLvt~e~vk~Mk 259 (371)
T COG0686 227 EAVKKADLVIGAVLIPGAKAP-KLVTREMVKQMK 259 (371)
T ss_pred HHhhhccEEEEEEEecCCCCc-eehhHHHHHhcC
Confidence 346789999999998887765 333455555444
No 47
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=26.93 E-value=2.8e+02 Score=20.95 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=21.0
Q ss_pred EEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcC
Q psy16096 48 VDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIP 84 (154)
Q Consensus 48 VDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiP 84 (154)
||||+....... ...+++.+.+.+.|+|.+|-.
T Consensus 57 vdgiii~~~~~~----~~~~~~~~~~~~ipvv~i~~~ 89 (270)
T cd01545 57 VDGVILTPPLSD----NPELLDLLDEAGVPYVRIAPG 89 (270)
T ss_pred CCEEEEeCCCCC----ccHHHHHHHhcCCCEEEEecC
Confidence 577777655422 134556666677888888854
No 48
>COG2002 AbrB Regulators of stationary/sporulation gene expression [Transcription]
Probab=26.76 E-value=47 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=16.2
Q ss_pred eEeEEeChhhHHhhCCCCC
Q psy16096 123 LGGRFIPKQLEKEYDLNLP 141 (154)
Q Consensus 123 ~g~~~iP~~~~~~~~~~~p 141 (154)
-|+++||.++.+.++++..
T Consensus 13 ~GqIvIPkeiR~~lgi~~G 31 (89)
T COG2002 13 KGQIVIPKEIREALGIKEG 31 (89)
T ss_pred CceEEecHHHHHHhCCCCC
Confidence 4889999999999988753
No 49
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=25.85 E-value=83 Score=22.96 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=40.1
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcccccccCeEEEccccccccc
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLCAH 114 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g~~ 114 (154)
|.++++..+|. .....++++.+++.+.++++|==.++ .. .+=.||.++.......++.
T Consensus 81 D~~i~iS~sG~-t~~~~~~~~~a~~~g~~ii~iT~~~~------s~-l~~~ad~~l~~~~~~~~~~ 138 (154)
T TIGR00441 81 DVLLGISTSGN-SKNVLKAIEAAKDKGMKTITLAGKDG------GK-MAGLADIELRVPHFYTPRI 138 (154)
T ss_pred CEEEEEcCCCC-CHHHHHHHHHHHHCCCEEEEEeCCCC------Cc-hhhhCCEEEEeCCCCcHHH
Confidence 55778888887 55566788888888999999843322 11 2336899888877766543
No 50
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=25.23 E-value=52 Score=28.30 Aligned_cols=70 Identities=11% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCceecC------CCC---------------CC-CCccEEEEeeecCCCCCCCCchHHHHHHHHh--
Q psy16096 17 ELYVNLLHQCKSLDIPVSES------LPA---------------ET-SVFHLIVDAIFGFSYKPPLRELFVPVINLFK-- 72 (154)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~~~------~~~---------------~l-~~~dlIVDalfGtG~~~~l~~~~~~li~~iN-- 72 (154)
+.++...+.+...|+.+.+. ..+ .+ .-|=..-|-..|++--+-.-+...++++.+-
T Consensus 236 ~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~lr~~ 315 (369)
T COG1509 236 PEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVEELRGR 315 (369)
T ss_pred HHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccHHHHHHHHHHHHHh
Confidence 66777888999999987651 110 01 2234466777887766554455555555543
Q ss_pred --cCCCCeEEEEcCCC
Q psy16096 73 --STKIPVVSIDIPSG 86 (154)
Q Consensus 73 --~~~~~vvSiDiPSG 86 (154)
....|++++|+|.|
T Consensus 316 ~SG~~~P~~v~d~pgg 331 (369)
T COG1509 316 TSGYAVPTLVVDIPGG 331 (369)
T ss_pred CCCcccceeEEecCCC
Confidence 44578999999998
No 51
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=25.13 E-value=2.2e+02 Score=20.79 Aligned_cols=36 Identities=33% Similarity=0.449 Sum_probs=26.1
Q ss_pred EEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy16096 47 IVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSG 86 (154)
Q Consensus 47 IVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSG 86 (154)
-+|+++|.+..... ..+.+.+++.+.|+|+++-+..
T Consensus 58 ~~d~ii~~~~~~~~----~~~~~~~~~~~ip~v~~~~~~~ 93 (269)
T cd01391 58 GVDGIIGPPSSSSA----LAVVELAAAAGIPVVSLDATAP 93 (269)
T ss_pred CCCEEEecCCCHHH----HHHHHHHHHcCCcEEEecCCCC
Confidence 47999998876432 2267777888899999887654
No 52
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=25.02 E-value=1.9e+02 Score=24.97 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=54.8
Q ss_pred ccEEEEee-ecCCCC-CCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCc---c-cccccCeEEEcccccccccccC
Q psy16096 44 FHLIVDAI-FGFSYK-PPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV---E-HKYQPHTLISLTAPKLCAHKFE 117 (154)
Q Consensus 44 ~dlIVDal-fGtG~~-~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~---~-~~v~Ad~Tvtf~~~K~g~~~~~ 117 (154)
+-+|++.+ .|.|-- .+.++.+.++.+.+.+.+...|.=++-+|+ +-+|.. . ..+++|.+ ||+..-.|
T Consensus 206 aavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~-GrtG~~fa~~~~gv~PDi~-t~gK~l~g----- 278 (428)
T PRK07986 206 AAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGF-GRTGKLFACEHAGIAPDIL-CLGKALTG----- 278 (428)
T ss_pred EEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC-ccCCCeeeecccCCCCCEE-EechhhhC-----
Confidence 45799997 677643 445577888888888888888877788998 567754 2 56889976 55432211
Q ss_pred CCccceEeEEeChhhHHhh
Q psy16096 118 GKHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 118 g~~~~~g~~~iP~~~~~~~ 136 (154)
|- --++.+..++++.+.+
T Consensus 279 G~-~p~~av~~~~~i~~~~ 296 (428)
T PRK07986 279 GT-MTLSATLTTREVAETI 296 (428)
T ss_pred Cc-ccCcchhchHHHHHHh
Confidence 11 1134444566666654
No 53
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.86 E-value=2.9e+02 Score=20.90 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=18.8
Q ss_pred chHHHHHHHHhcCCCCeEEEEcC
Q psy16096 62 ELFVPVINLFKSTKIPVVSIDIP 84 (154)
Q Consensus 62 ~~~~~li~~iN~~~~~vvSiDiP 84 (154)
......++.+.+.+.|++.+|.+
T Consensus 67 ~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 67 DSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHHhhcCceEEEEecc
Confidence 34557788888889999999998
No 54
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=24.86 E-value=1.5e+02 Score=24.88 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=58.7
Q ss_pred ccEEEEeeecCCCCCC-CCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKPP-LRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~-l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|++-++|+|-..+ ..+.+.++.+.+.+.+..+++=++=+|+ .-+|... ..+.+|.. ||+.. + ..|
T Consensus 181 aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~-Gr~G~~~a~~~~gv~pDi~-t~~K~---l--ggG 253 (397)
T TIGR03246 181 CAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGV-GRTGELYAYMHYGVTPDIL-TSAKA---L--GGG 253 (397)
T ss_pred EEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CccccchhhhhcCCCCCEE-Eeehh---h--hCC
Confidence 4689999999876554 5678888888889888877777777999 5677532 45678864 55432 2 122
Q ss_pred CccceEeEEeChhhHHhhC
Q psy16096 119 KHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~ 137 (154)
- -+|.+..++++.+.+.
T Consensus 254 ~--pigav~~~~~i~~~~~ 270 (397)
T TIGR03246 254 F--PIGAMLTTTEIAAHLK 270 (397)
T ss_pred c--ceeEEEEcHHHHHhcc
Confidence 2 3566667888877654
No 55
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.66 E-value=39 Score=25.03 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCCCCCCCcc-cccccCeEEEccc
Q psy16096 76 IPVVSIDIPSGWNVEHGPVE-HKYQPHTLISLTA 108 (154)
Q Consensus 76 ~~vvSiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~ 108 (154)
.+-.|+++|||+-+--.-.. ..=+||.-|-+.-
T Consensus 56 lkYAAvEvPSGvRGRMsl~gplIeeAeAaIIv~~ 89 (143)
T PF09885_consen 56 LKYAAVEVPSGVRGRMSLIGPLIEEAEAAIIVED 89 (143)
T ss_pred cceeEeecCCcccchhhhhhhhHhhhceeeEecC
Confidence 45679999999876543222 2334555554443
No 56
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=24.48 E-value=4.1e+02 Score=22.25 Aligned_cols=85 Identities=13% Similarity=0.201 Sum_probs=57.9
Q ss_pred ccEEEEeeecCCCCC-CCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKP-PLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~-~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+||+.++++|-.. +.++.+.++.+.+++.+..+|+=|+=+|+- .+|... ..+.+|. +||+ | ++- +|
T Consensus 186 aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g-~~g~~~~~~~~~~~pdi-~s~s--K-~l~--~G 258 (403)
T PRK05093 186 CAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMG-RTGDLFAYMHYGVTPDI-LTSA--K-ALG--GG 258 (403)
T ss_pred EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC-CCccchhhhhcCCCCCE-EEec--c-ccc--CC
Confidence 468999999998765 456788999999999888888878878873 355421 2355663 4554 2 221 23
Q ss_pred CccceEeEEeChhhHHhhC
Q psy16096 119 KHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~ 137 (154)
- -+|-+..|+++.+.+.
T Consensus 259 ~--rig~vv~~~~i~~~l~ 275 (403)
T PRK05093 259 F--PIGAMLTTAEIASHFK 275 (403)
T ss_pred c--ceEEEEEcHHHHhhcC
Confidence 2 3566777888877654
No 57
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.45 E-value=2.4e+02 Score=19.37 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=39.7
Q ss_pred eEEEEeCCCCh-HHHHHHHHHHHhCCCceec------CCCCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCe
Q psy16096 6 PEIYYPKPPSK-ELYVNLLHQCKSLDIPVSE------SLPAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPV 78 (154)
Q Consensus 6 V~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~------~~~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~v 78 (154)
+-+++-+...+ =..++..+.+++.|+++.. ++....+++|+|+ + ...++-.+.++-+.+...+.||
T Consensus 3 Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvil---l----~PQv~~~~~~i~~~~~~~~ipv 75 (99)
T cd05565 3 VLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVI---L----APQMASYYDELKKDTDRLGIKL 75 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEE---E----cChHHHHHHHHHHHhhhcCCCE
Confidence 44455334333 3345556778888886542 2223356676554 1 2234445555666666667889
Q ss_pred EEEEc
Q psy16096 79 VSIDI 83 (154)
Q Consensus 79 vSiDi 83 (154)
..||.
T Consensus 76 ~~I~~ 80 (99)
T cd05565 76 VTTTG 80 (99)
T ss_pred EEeCH
Confidence 88874
No 58
>PF03082 MAGSP: Male accessory gland secretory protein; InterPro: IPR004315 The accessory gland of male insects is a genital tissue that secretes many components of the ejaculatory fluid, some of which affect the female's receptivity to courtship and her rate of oviposition. The protein is expressed exclusively in the male accessory glands of adult Drosophila melanogaster. During copulation it is transferred to the female genital tract where it is rapidly altered [].; GO: 0007618 mating, 0005576 extracellular region
Probab=24.44 E-value=44 Score=26.83 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCCCCCCCCc
Q psy16096 65 VPVINLFKSTKIPVVSIDIPSGWNVEHGPV 94 (154)
Q Consensus 65 ~~li~~iN~~~~~vvSiDiPSGld~dtG~~ 94 (154)
.+++..+|.. ...||-|+|+|-++..|..
T Consensus 233 ~~L~q~in~e-i~kvatdvpt~~~ps~gn~ 261 (264)
T PF03082_consen 233 KELIQKINSE-IAKVATDVPTETNPSQGNP 261 (264)
T ss_pred HHHHHHHHHH-HHHhhccCCCCCCCCcCCC
Confidence 3455566654 4456999999999988865
No 59
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=24.44 E-value=1.3e+02 Score=25.78 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=30.5
Q ss_pred eeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy16096 50 AIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGW 87 (154)
Q Consensus 50 alfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGl 87 (154)
++.+|....-..+.+..+++.. +...+++.+|.|.|+
T Consensus 80 ~VvTTCvseIIGDDIeaVvkE~-~~giPVI~V~t~GGf 116 (352)
T TIGR03282 80 GVVGTCASMIIGEDLKEAVDEA-DVDAEVIAVEVHAGF 116 (352)
T ss_pred EEECCCchhhccCCHHHHHHHh-CCCCCEEEEECCCCC
Confidence 5778888777788888888876 357899999999998
No 60
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=24.11 E-value=1.3e+02 Score=24.35 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=11.8
Q ss_pred CCccEEEEeeecC-CCC
Q psy16096 42 SVFHLIVDAIFGF-SYK 57 (154)
Q Consensus 42 ~~~dlIVDalfGt-G~~ 57 (154)
..-++|+|-++|+ |-.
T Consensus 153 ~~~~IilDPgi~~~~~~ 169 (261)
T PRK07535 153 PPEDIYIDPLVLPLSAA 169 (261)
T ss_pred CHhHEEEeCCCCcccCC
Confidence 3458999999994 444
No 61
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=23.22 E-value=2.8e+02 Score=19.60 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=24.2
Q ss_pred CCCccEEEEeeecCCC--CCCCCchHHHHHHHHhcCCC
Q psy16096 41 TSVFHLIVDAIFGFSY--KPPLRELFVPVINLFKSTKI 76 (154)
Q Consensus 41 l~~~dlIVDalfGtG~--~~~l~~~~~~li~~iN~~~~ 76 (154)
+.++|.| +||+.. .+.++.+....+++++..++
T Consensus 48 ~~~~d~i---ilgs~t~~~g~~p~~~~~fl~~l~~~~k 82 (140)
T TIGR01754 48 PENYDLV---FLGTWTWERGRTPDEMKDFIAELGYKPS 82 (140)
T ss_pred hhhCCEE---EEEcCeeCCCcCCHHHHHHHHHhcccCC
Confidence 4557775 699974 56788889999998876443
No 62
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=23.19 E-value=3.8e+02 Score=21.12 Aligned_cols=95 Identities=7% Similarity=0.035 Sum_probs=62.3
Q ss_pred EEEEeCCCChH-HHHHHHHHHHhCCCceec----CC----CCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCC
Q psy16096 7 EIYYPKPPSKE-LYVNLLHQCKSLDIPVSE----SL----PAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIP 77 (154)
Q Consensus 7 ~v~~~~~~~~~-~~~~~~~~~~~~g~~~~~----~~----~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~ 77 (154)
+||..|-.++. -.+....++.+.|.+... +. ...+.+-|++| ||-|.|-+.+ +..++..+.+.+.+
T Consensus 41 kv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~Dvvi-aiS~SGeT~e----l~~~~~~aK~~g~~ 115 (202)
T COG0794 41 KVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVI-AISGSGETKE----LLNLAPKAKRLGAK 115 (202)
T ss_pred cEEEEcCChhHHHHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEE-EEeCCCcHHH----HHHHHHHHHHcCCc
Confidence 35666655453 345555677788877543 11 11366778776 7777776544 56788888888999
Q ss_pred eEEEEcCCCCCCCCCCcc--cccccCeEEEcccccccccc
Q psy16096 78 VVSIDIPSGWNVEHGPVE--HKYQPHTLISLTAPKLCAHK 115 (154)
Q Consensus 78 vvSiDiPSGld~dtG~~~--~~v~Ad~Tvtf~~~K~g~~~ 115 (154)
++||= ++.. .+=.||+++.+-..+...-.
T Consensus 116 liaiT---------~~~~SsLak~aDvvl~ip~~~e~~p~ 146 (202)
T COG0794 116 LIAIT---------SNPDSSLAKAADVVLVIPVKTEACPL 146 (202)
T ss_pred EEEEe---------CCCCChHHHhcCeEEEccCccccCcc
Confidence 99983 3322 56689999999887775543
No 63
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.06 E-value=1.5e+02 Score=25.67 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=57.2
Q ss_pred ccEEEEee-ecCCCCC-CCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccC
Q psy16096 44 FHLIVDAI-FGFSYKP-PLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFE 117 (154)
Q Consensus 44 ~dlIVDal-fGtG~~~-~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~ 117 (154)
+.+|+.-+ .|.|--. +.++-+.++.+.+.+.+...|.=++-+|+ +-||... ..+++|..+ |+. ++ .-
T Consensus 208 AAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~-GrtG~~~a~~~~gv~PDiv~-~gK---~l--~g 280 (429)
T PRK06173 208 AALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGF-GRTGKLFALEHAGVVPDIMC-IGK---AL--TG 280 (429)
T ss_pred EEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCC-CcCCcchHHHhcCCCCCEEE-eeh---hh--hC
Confidence 56899997 8986444 55666777777788888888888889997 5677542 467889654 543 33 11
Q ss_pred CCccceEeEEeChhhHHhh
Q psy16096 118 GKHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 118 g~~~~~g~~~iP~~~~~~~ 136 (154)
|- --++.+...+++.+.+
T Consensus 281 G~-~p~~a~~~~~~i~~~~ 298 (429)
T PRK06173 281 GY-LTLSATITTEAIAQTI 298 (429)
T ss_pred Cc-cccceEEecHHHHHHH
Confidence 21 1256666777776654
No 64
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=22.96 E-value=1.5e+02 Score=25.29 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=57.9
Q ss_pred ccEEEEeeecCCCCCCC-CchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCc---c-cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKPPL-RELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV---E-HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~l-~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~---~-~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+.+|+.-+.|.|-...+ ++-++++.+.+.+.+..+|+=+|=+|+-- +|.. . ..+.+|. +||+ | ++- +|
T Consensus 199 Aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr-~g~~~a~~~~~~~pDi-~~ls--K-~l~--~G 271 (420)
T TIGR00700 199 AALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR-TGAMFACEHEGPEPDL-ITTA--K-SLA--DG 271 (420)
T ss_pred EEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc-cchhHHHhhcCCCCCE-EEee--c-ccc--CC
Confidence 66899999998655544 44488888888888888999999999843 4532 1 4568884 4543 2 232 23
Q ss_pred CccceEeEEeChhhHHhhC
Q psy16096 119 KHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~ 137 (154)
- -+|.+..|+++++.+.
T Consensus 272 ~--pig~v~~~~~i~~~~~ 288 (420)
T TIGR00700 272 L--PLSGVTGRAEIMDAPA 288 (420)
T ss_pred c--ceEEEEecHHHHhhcC
Confidence 3 3567778888887654
No 65
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=22.31 E-value=1.7e+02 Score=25.07 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=58.6
Q ss_pred ccEEEEeeecCCC-CCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSY-KPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~-~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|+..+.|.|- .-+..+-++++.+++++.+..+|.=||-+|+. -+|... ..+++|. +||+..-. +|
T Consensus 200 aavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~g-r~G~~~a~~~~~~~pDi-~t~gK~l~-----~G 272 (421)
T PRK09792 200 AAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFA-RTGKLFAMDHYADKPDL-MTMAKSLA-----GG 272 (421)
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC-CCCchhHHHhcCCCCcE-EEeehhhc-----CC
Confidence 4689999988654 34567778888899999999999999999985 477532 2468884 56653221 22
Q ss_pred CccceEeEEeChhhHHhhC
Q psy16096 119 KHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~ 137 (154)
- =+|.+..++++.+.+.
T Consensus 273 ~--pigav~~~~~i~~~~~ 289 (421)
T PRK09792 273 M--PLSGVVGNANIMDAPA 289 (421)
T ss_pred C--ceEEEEEcHHHHhccC
Confidence 2 2466667888776653
No 66
>PRK06541 hypothetical protein; Provisional
Probab=22.17 E-value=1.6e+02 Score=25.71 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=58.7
Q ss_pred ccEEEEeeecCCCCCCC-CchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKPPL-RELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~l-~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|++-++|.|-.-++ ++-+.++.+.+.+.+...|+=+|-+|+- -+|... ..+++|.+ ||+. ++- .|
T Consensus 223 Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfG-R~G~~~a~~~~gv~PDiv-t~gK---~l~--~G 295 (460)
T PRK06541 223 AAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFG-RLGEMFGCERFGYVPDII-TCAK---GIT--SG 295 (460)
T ss_pred EEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC-cCchhhhhhhcCCCCCEE-Eecc---ccc--CC
Confidence 56899999998766544 6667888888888888888888889984 567542 46788864 5533 221 11
Q ss_pred CccceEeEEeChhhHHhhC
Q psy16096 119 KHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~ 137 (154)
- .-+|.+..++++.+.+.
T Consensus 296 ~-~pigav~~~~~i~~~~~ 313 (460)
T PRK06541 296 Y-SPLGAMIASDRLFEPFL 313 (460)
T ss_pred c-cceeEEEEcHHHHHHhh
Confidence 1 12577778888877654
No 67
>PRK07483 hypothetical protein; Provisional
Probab=22.15 E-value=1.1e+02 Score=26.41 Aligned_cols=86 Identities=10% Similarity=0.218 Sum_probs=57.0
Q ss_pred ccEEEEeeecC--CCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccC
Q psy16096 44 FHLIVDAIFGF--SYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFE 117 (154)
Q Consensus 44 ~dlIVDalfGt--G~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~ 117 (154)
+-+||..+.|. |..-+.++-++.+-+.+.+.+...|+=.|-+|+- -||... ..+++|.+.. +. |+- -
T Consensus 201 AAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfG-RtG~~~a~~~~gv~PDiv~~-gK---~l~--g 273 (443)
T PRK07483 201 AAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMG-RTGTLFACEEDGVAPDLVTI-AK---GLG--A 273 (443)
T ss_pred EEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcc-cCcHHHHHhhcCCCCCeeee-hh---hhc--c
Confidence 56899999984 5555666667777777788888888888999994 577543 4688996544 22 221 1
Q ss_pred CCccceEeEEeChhhHHhhC
Q psy16096 118 GKHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 118 g~~~~~g~~~iP~~~~~~~~ 137 (154)
|- .-+|.+...+++.+.+.
T Consensus 274 G~-~Pi~av~~~~~i~~~~~ 292 (443)
T PRK07483 274 GY-QPIGAVLASDRIYDAIA 292 (443)
T ss_pred Cc-cccEEEEEcHHHHHHHh
Confidence 11 12566667777776653
No 68
>PRK07480 putative aminotransferase; Validated
Probab=21.86 E-value=1.9e+02 Score=25.25 Aligned_cols=85 Identities=11% Similarity=0.130 Sum_probs=55.2
Q ss_pred ccEEEEeeecCCCCCC-CCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCc---c-cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKPP-LRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV---E-HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~-l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~---~-~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|+.-+.|.|--.. ..+-++.+-+.+.+.+...|.=.|-+|+- -||.. . ..+++|. +||+..=.|=+.
T Consensus 221 AAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfG-RtG~~~a~~~~gv~PDi-v~~gK~l~gG~~--- 295 (456)
T PRK07480 221 AAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFG-RTGEWFGSQHFGIKPDL-MTIAKGLTSGYI--- 295 (456)
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC-cCcchhhhhhcCCCCCe-eeeehhhccCCc---
Confidence 5689999999865544 45556666677788888888888999983 46643 2 5688996 455432211111
Q ss_pred CccceEeEEeChhhHHhh
Q psy16096 119 KHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~ 136 (154)
-+|.+...+++.+.+
T Consensus 296 ---Pi~av~~~~~i~~~~ 310 (456)
T PRK07480 296 ---PMGAVGVGDRVAEVL 310 (456)
T ss_pred ---cceEEEEcHHHHHHH
Confidence 145566677776655
No 69
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=21.79 E-value=2.4e+02 Score=24.19 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=57.6
Q ss_pred ccEEEEee-ecCC-CCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCc--c--cccccCeEEEcccccccccccC
Q psy16096 44 FHLIVDAI-FGFS-YKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPV--E--HKYQPHTLISLTAPKLCAHKFE 117 (154)
Q Consensus 44 ~dlIVDal-fGtG-~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~--~--~~v~Ad~Tvtf~~~K~g~~~~~ 117 (154)
+-+|++.+ .|.| ..-+..+.+.++.+.+.+.+...|.=++-+|+ .-||.. . ..+++|.++ |+ | ++ ..
T Consensus 209 aavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-Gr~G~~~~~~~~~v~pDi~~-~g--K-~l--~g 281 (427)
T TIGR00508 209 AAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGF-GRTGKLFACEHAGVVPDILC-VG--K-AL--TG 281 (427)
T ss_pred EEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC-CcCCccchhhhcCCCCCEEE-ec--h-hh--hc
Confidence 46899997 8887 44456788888888888888888888888997 557753 1 456888653 43 3 33 12
Q ss_pred CCccceEeEEeChhhHHhhC
Q psy16096 118 GKHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 118 g~~~~~g~~~iP~~~~~~~~ 137 (154)
|- --++.+...+++.+.+.
T Consensus 282 G~-~p~~a~~~~~~~~~~~~ 300 (427)
T TIGR00508 282 GY-MTLSATVTTDKVAQTIS 300 (427)
T ss_pred Cc-ccceEEEEcHHHHHHHh
Confidence 22 12466666777766554
No 70
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.66 E-value=1.1e+02 Score=23.43 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=38.9
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc-cccccCeEEEcccccccc
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCA 113 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~ 113 (154)
|.++++..+|. .....++++.+.+.+.++++|==..+ +... ..-.||+.+.....+.+.
T Consensus 113 Dv~i~iS~sG~-t~~~~~~~~~ak~~g~~iI~IT~~~~-----s~l~~l~~~ad~~l~v~~~~~~~ 172 (197)
T PRK13936 113 DVLLAISTSGN-SANVIQAIQAAHEREMHVVALTGRDG-----GKMASLLLPEDVEIRVPAERTAR 172 (197)
T ss_pred CEEEEEeCCCC-cHHHHHHHHHHHHCCCeEEEEECCCC-----ChhhhhhccCCEEEEeCCCcHHH
Confidence 55677777776 44567788888889999999843321 1111 122589888887766553
No 71
>COG4923 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=21.58 E-value=1.1e+02 Score=24.33 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=20.1
Q ss_pred chHHHHHHHHh-cCCCCeEEEEcCCCCCC
Q psy16096 62 ELFVPVINLFK-STKIPVVSIDIPSGWNV 89 (154)
Q Consensus 62 ~~~~~li~~iN-~~~~~vvSiDiPSGld~ 89 (154)
+++..+.+.+. +..-+++.||||-|+-.
T Consensus 37 ~ef~~f~dfl~~~~~d~~vlvDiPIGLp~ 65 (245)
T COG4923 37 EEFASFADFLAASPDDAVVLVDIPIGLPE 65 (245)
T ss_pred HHHHHHHHHHhcCCCCceEEEeccccCCc
Confidence 34566666654 34568999999999975
No 72
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.50 E-value=1.2e+02 Score=24.15 Aligned_cols=92 Identities=12% Similarity=0.032 Sum_probs=52.2
Q ss_pred EEEeCCCCh-HHHHHHHHHHHhCCCceec--CCC------CCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCe
Q psy16096 8 IYYPKPPSK-ELYVNLLHQCKSLDIPVSE--SLP------AETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPV 78 (154)
Q Consensus 8 v~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~~------~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~v 78 (154)
|++.|...+ ..++.....+...|..... +.. ..+.+-|++| .++++|. ..+..++++.+.+.++++
T Consensus 131 I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I----~iS~sg~-~~~~~~~~~~ak~~ga~i 205 (278)
T PRK11557 131 IILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLL----AISYSGE-RRELNLAADEALRVGAKV 205 (278)
T ss_pred EEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEE----EEcCCCC-CHHHHHHHHHHHHcCCCE
Confidence 455544433 3444444556667766543 110 1245666654 5577777 445666788888889999
Q ss_pred EEEEcCCCCCCCCCCcccccccCeEEEcccccc
Q psy16096 79 VSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKL 111 (154)
Q Consensus 79 vSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~ 111 (154)
|+|==. ... ..+=.||+++.......
T Consensus 206 I~IT~~-----~~s--~la~~ad~~l~~~~~~~ 231 (278)
T PRK11557 206 LAITGF-----TPN--ALQQRASHCLYTIAEEQ 231 (278)
T ss_pred EEEcCC-----CCC--chHHhCCEEEEeCCCCc
Confidence 998211 111 13447898887655443
No 73
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=21.47 E-value=2.2e+02 Score=23.45 Aligned_cols=85 Identities=14% Similarity=0.202 Sum_probs=54.2
Q ss_pred ccEEEEeeecCCCCC-CCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKP-PLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~-~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|++.+.|.|-.- +.++.+.++.+.+.+.+..+++=|+=+|+. -+|... ..+.+| ++||+ | ++- .|
T Consensus 169 ~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g-~~g~~~~~~~~~~~~d-i~t~s--K-~l~--~G 241 (377)
T PRK02936 169 AAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIG-RTGTLFAYEQFGLDPD-IVTVA--K-GLG--NG 241 (377)
T ss_pred EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC-cCchhhHHHhhCCCCc-EEEEc--c-ccc--CC
Confidence 468899999876444 456778899999999888888888888874 355321 345667 35553 2 221 22
Q ss_pred CccceEeEEeChhhHHhhC
Q psy16096 119 KHHFLGGRFIPKQLEKEYD 137 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~~ 137 (154)
- -+|-+..|+++.+.+.
T Consensus 242 ~--~ig~v~~~~~~~~~~~ 258 (377)
T PRK02936 242 I--PVGAMIGKKELGTAFG 258 (377)
T ss_pred C--ccEEEEEcHHHHhhcc
Confidence 1 1344556777777654
No 74
>PLN02624 ornithine-delta-aminotransferase
Probab=21.39 E-value=4.7e+02 Score=22.81 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=54.5
Q ss_pred ccEEEEeeecCCCCCCCC-chHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKPPLR-ELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~l~-~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+|++.+.|.|-.-.++ +-+.++.+.+.+.+..+++=++-+|+ .-+|... ..+++| .++|+ | ++- -|
T Consensus 226 aaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~-GrtG~~~a~~~~~i~pD-iv~ls--K-~lg--gG 298 (474)
T PLN02624 226 AAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGL-ARTGKMLACDWEEVRPD-VVILG--K-ALG--GG 298 (474)
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-CcCcchhhHHhcCCCCC-EEEec--c-ccc--CC
Confidence 458999999876544333 35888888888888877777788987 3466532 346777 45565 3 332 12
Q ss_pred CccceEeEEeChhhHHhh
Q psy16096 119 KHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~ 136 (154)
- -.+|.+..++++.+.+
T Consensus 299 ~-~pigav~~~~~i~~~~ 315 (474)
T PLN02624 299 V-IPVSAVLADKDVMLCI 315 (474)
T ss_pred C-CcceeeeecHHHHhHh
Confidence 1 2456666777776654
No 75
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=21.16 E-value=1.6e+02 Score=24.23 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=15.5
Q ss_pred CCccEEEEeeecCCCCCCCCchHHHHHHHHh
Q psy16096 42 SVFHLIVDAIFGFSYKPPLRELFVPVINLFK 72 (154)
Q Consensus 42 ~~~dlIVDalfGtG~~~~l~~~~~~li~~iN 72 (154)
.+-++|+|-.||+| ... +.-.++++.++
T Consensus 178 ~~~~IilDPGiGF~--k~~-~~n~~ll~~l~ 205 (282)
T PRK11613 178 AKEKLLLDPGFGFG--KNL-SHNYQLLARLA 205 (282)
T ss_pred ChhhEEEeCCCCcC--CCH-HHHHHHHHHHH
Confidence 34579999965544 333 33344555444
No 76
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.14 E-value=2.7e+02 Score=18.74 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=39.3
Q ss_pred eeEEEEeCCCCh-HHHHHHHHHHHhCCCceec------CCCCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCC
Q psy16096 5 EPEIYYPKPPSK-ELYVNLLHQCKSLDIPVSE------SLPAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIP 77 (154)
Q Consensus 5 ~V~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~------~~~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~ 77 (154)
++-+++-.+-.+ -...+..+.+++.|++... ++.....++|+|+ + ...++..+.++-+.++..+.|
T Consensus 5 ~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvil---l----~pqi~~~~~~i~~~~~~~~ip 77 (95)
T TIGR00853 5 NILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVL---L----APQVAYMLPDLKKETDKKGIP 77 (95)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEE---E----CchHHHHHHHHHHHhhhcCCC
Confidence 344444333333 2344445677878876532 1222345666654 2 233455566666667777789
Q ss_pred eEEEEc
Q psy16096 78 VVSIDI 83 (154)
Q Consensus 78 vvSiDi 83 (154)
+..||.
T Consensus 78 v~~I~~ 83 (95)
T TIGR00853 78 VEVING 83 (95)
T ss_pred EEEeCh
Confidence 988774
No 77
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=21.08 E-value=75 Score=20.90 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.4
Q ss_pred hcCCCCeEEEEcCCCCCCCCCCcc
Q psy16096 72 KSTKIPVVSIDIPSGWNVEHGPVE 95 (154)
Q Consensus 72 N~~~~~vvSiDiPSGld~dtG~~~ 95 (154)
++.+....+++.|+++....|...
T Consensus 35 ~~~G~~~~sV~Cp~~~~~~~G~tf 58 (80)
T PF14230_consen 35 EQYGVTPVSVTCPGDLEVEVGATF 58 (80)
T ss_pred HhhCCCCCEeECCCCCcccCCceE
Confidence 345677889999999999999644
No 78
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.99 E-value=3.7e+02 Score=22.51 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=46.6
Q ss_pred cceeEEEEeCCCChHHHHHHHHHHHhCCCceec--CCC--CCCCCccEEE---EeeecCCCCCCCCchHHHHHHHHhcCC
Q psy16096 3 GYEPEIYYPKPPSKELYVNLLHQCKSLDIPVSE--SLP--AETSVFHLIV---DAIFGFSYKPPLRELFVPVINLFKSTK 75 (154)
Q Consensus 3 G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~--~~l~~~dlIV---DalfGtG~~~~l~~~~~~li~~iN~~~ 75 (154)
|.+.+|+....+..-+-+...+.+++.|++... +.. ..++++|.|+ |++++-|.=-.--|. ..+.-.+.+.+
T Consensus 143 ~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT-~~lA~~A~e~~ 221 (301)
T COG1184 143 GKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGT-SPLALAARELR 221 (301)
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccch-HHHHHHHHHhC
Confidence 556788887765443344556778888987654 111 1245677776 667666533222233 23444556778
Q ss_pred CCeEEEEcC
Q psy16096 76 IPVVSIDIP 84 (154)
Q Consensus 76 ~~vvSiDiP 84 (154)
.|++++=-.
T Consensus 222 ~Pf~v~aes 230 (301)
T COG1184 222 VPFYVVAES 230 (301)
T ss_pred CCEEEEeee
Confidence 888776433
No 79
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=20.74 E-value=1.6e+02 Score=23.67 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCceecCCCCCCCCccEEEEeeecCCC
Q psy16096 20 VNLLHQCKSLDIPVSESLPAETSVFHLIVDAIFGFSY 56 (154)
Q Consensus 20 ~~~~~~~~~~g~~~~~~~~~~l~~~dlIVDalfGtG~ 56 (154)
+...+.+.+.|++ ..|+|+|-.+|++-
T Consensus 151 ~~~i~~~~~~Gi~----------~~~iilDPg~gf~k 177 (257)
T TIGR01496 151 EARAEELVAAGVA----------AERIILDPGIGFGK 177 (257)
T ss_pred HHHHHHHHHcCCC----------HHHEEEECCCCccc
Confidence 3344556666643 45899999666544
No 80
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=20.67 E-value=1.2e+02 Score=24.82 Aligned_cols=92 Identities=11% Similarity=0.112 Sum_probs=54.1
Q ss_pred EEEEeCCCCh-HHHHHHHHHHHhCCCceecC----CC----CCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCC
Q psy16096 7 EIYYPKPPSK-ELYVNLLHQCKSLDIPVSES----LP----AETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIP 77 (154)
Q Consensus 7 ~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~~----~~----~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~ 77 (154)
++++.+...+ ..+......+...|.+.... .. ..+.+- |.++++..+|. .....++++.+++.+.+
T Consensus 49 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~----d~~I~iS~sG~-t~~~~~~~~~ak~~g~~ 123 (326)
T PRK10892 49 KVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQ----DVVIAISNSGE-SSEILALIPVLKRLHVP 123 (326)
T ss_pred eEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCC----CEEEEEeCCCC-CHHHHHHHHHHHHCCCc
Confidence 3555555443 34444445666677765431 11 113334 45788888887 44556688888888999
Q ss_pred eEEEEcCCCCCCCCCCcccccccCeEEEccccc
Q psy16096 78 VVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPK 110 (154)
Q Consensus 78 vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K 110 (154)
+++|==..+ .. .+=.||+++......
T Consensus 124 vi~iT~~~~------s~-la~~ad~~l~~~~~~ 149 (326)
T PRK10892 124 LICITGRPE------SS-MARAADIHLCVKVPK 149 (326)
T ss_pred EEEEECCCC------Cc-ccccCCEEEEeCCCc
Confidence 999832211 11 344688888776554
No 81
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=20.58 E-value=2e+02 Score=25.01 Aligned_cols=85 Identities=15% Similarity=0.118 Sum_probs=55.9
Q ss_pred ccEEEEeeecCCCCCC-CCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKPP-LRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~~-l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+.+|++.++|.|--.. .++-++++.+.+.+.+...|.=+|-+|+- -||... ..+++|.. ||+..--+ |
T Consensus 226 AavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~G-RtG~~~a~e~~gv~PDiv-t~gK~lg~-----G 298 (442)
T TIGR03372 226 AAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMG-RTGKMFACEHEGVQPDIL-CLAKALGG-----G 298 (442)
T ss_pred EEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCC-ccccchhhhhcCCCCCee-eehhhhcC-----C
Confidence 5689999999875544 45556777777888888888888999974 477531 56889964 45432211 1
Q ss_pred CccceEeEEeChhhHHhh
Q psy16096 119 KHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~ 136 (154)
- --+|.+...+++.+.+
T Consensus 299 ~-~Pigavv~~~~i~~~~ 315 (442)
T TIGR03372 299 V-MPIGATIATEAVFSVL 315 (442)
T ss_pred c-ccceEEEecHHHHHhh
Confidence 0 0145556667776655
No 82
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=20.47 E-value=1.8e+02 Score=25.25 Aligned_cols=85 Identities=12% Similarity=0.189 Sum_probs=55.2
Q ss_pred ccEEEEeeecCCCCC-CCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcc----cccccCeEEEcccccccccccCC
Q psy16096 44 FHLIVDAIFGFSYKP-PLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVE----HKYQPHTLISLTAPKLCAHKFEG 118 (154)
Q Consensus 44 ~dlIVDalfGtG~~~-~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~----~~v~Ad~Tvtf~~~K~g~~~~~g 118 (154)
+-+||+.++|.|-.. +.++-+.++.+.+.+.+...|.=+|-+|+- -||... ..+++|. +||+....|=+.+
T Consensus 220 Aavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~G-RtG~~~~~~~~gv~PDi-~~~gK~l~gG~~P-- 295 (445)
T PRK09221 220 AAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFG-RLGAAFAAERFGVTPDI-ITFAKGLTNGAIP-- 295 (445)
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCC-cCchhhHHHhcCCCCCE-EEeccccccCccc--
Confidence 568999999986554 445556777777788888788777889964 455432 4578884 5666544332111
Q ss_pred CccceEeEEeChhhHHhh
Q psy16096 119 KHHFLGGRFIPKQLEKEY 136 (154)
Q Consensus 119 ~~~~~g~~~iP~~~~~~~ 136 (154)
+|.+..++++++.+
T Consensus 296 ----i~av~~~~~i~~~~ 309 (445)
T PRK09221 296 ----MGAVIASDEIYDAF 309 (445)
T ss_pred ----ceeeEEcHHHHHhh
Confidence 35556677776654
No 83
>KOG2730|consensus
Probab=20.38 E-value=73 Score=25.94 Aligned_cols=31 Identities=32% Similarity=0.347 Sum_probs=22.1
Q ss_pred CccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEc
Q psy16096 43 VFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDI 83 (154)
Q Consensus 43 ~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDi 83 (154)
.+++||||-+|-|.+- |+..- ...+|+||||
T Consensus 94 ~~~~iidaf~g~gGnt---------iqfa~-~~~~VisIdi 124 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNT---------IQFAL-QGPYVIAIDI 124 (263)
T ss_pred CcchhhhhhhcCCchH---------HHHHH-hCCeEEEEec
Confidence 6789999999998652 22222 3567889997
No 84
>PRK13937 phosphoheptose isomerase; Provisional
Probab=20.36 E-value=1.2e+02 Score=22.87 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=37.2
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcccccccCeEEEccccccc
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLC 112 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g 112 (154)
|.++++..+|. .....++++.+++.+.++++|==.. +.. ..=.||+++........
T Consensus 108 Dl~i~iS~sG~-t~~~~~~~~~ak~~g~~~I~iT~~~------~s~-L~~~ad~~l~~~~~e~~ 163 (188)
T PRK13937 108 DVLIGISTSGN-SPNVLAALEKARELGMKTIGLTGRD------GGK-MKELCDHLLIVPSDDTP 163 (188)
T ss_pred CEEEEEeCCCC-cHHHHHHHHHHHHCCCeEEEEeCCC------CCh-hHHhCCEEEEeCCCCcH
Confidence 55778888887 4556678888888899999983211 111 23367888877765543
No 85
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.09 E-value=70 Score=22.16 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=22.1
Q ss_pred CccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy16096 43 VFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPS 85 (154)
Q Consensus 43 ~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPS 85 (154)
+.|++| +|||-+ ....-.++.+++++.+..+-..|-|+
T Consensus 53 ~pe~li---iGtG~~--~~~~~~~~~~~l~~~GI~ve~m~T~~ 90 (110)
T PF04430_consen 53 KPEVLI---IGTGKR--QLFLPPELREYLRKKGIGVEVMDTPA 90 (110)
T ss_dssp S-SEEE---EEETTS---SECTHHHHHHHHTTT-EEEEE-HHH
T ss_pred CCcEEE---EccCCc--cccCCHHHHHHHHHcCCeEEEECHHH
Confidence 567775 999998 34444556667776665555555443
Done!