Query psy16096
Match_columns 154
No_of_seqs 139 out of 1040
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 20:46:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jzt_A Hypothetical 27.5 kDa p 100.0 2.4E-42 8.2E-47 276.1 14.8 151 2-152 84-246 (246)
2 2o8n_A APOA-I binding protein; 100.0 1.3E-41 4.4E-46 274.4 15.1 151 2-153 105-259 (265)
3 3rss_A Putative uncharacterize 100.0 1.5E-33 5.2E-38 244.5 11.2 134 1-135 77-217 (502)
4 3k5w_A Carbohydrate kinase; 11 100.0 3.1E-31 1.1E-35 228.6 9.3 127 4-134 73-208 (475)
5 3d3j_A Enhancer of mRNA-decapp 100.0 1.4E-28 4.8E-33 201.8 14.0 137 2-153 158-304 (306)
6 3d3k_A Enhancer of mRNA-decapp 100.0 2.1E-28 7.3E-33 196.6 12.1 137 2-153 111-257 (259)
7 1yfb_A Transition state regula 40.6 14 0.00049 22.2 1.8 18 123-140 21-38 (59)
8 1nlt_A Protein YDJ1, mitochond 30.4 69 0.0024 24.4 4.7 69 77-146 112-189 (248)
9 3sho_A Transcriptional regulat 30.0 60 0.002 22.7 4.1 94 7-112 41-144 (187)
10 3lyd_A Uncharacterized protein 29.8 27 0.00091 25.4 2.1 37 76-112 17-63 (161)
11 3agx_A DNAJ homolog subfamily 29.5 72 0.0025 23.1 4.5 69 77-146 43-120 (181)
12 3tb6_A Arabinose metabolism tr 29.4 1.6E+02 0.0056 21.4 7.2 38 48-85 72-109 (298)
13 2q2g_A HSP40 protein, heat sho 26.9 74 0.0025 22.9 4.1 69 77-146 42-120 (180)
14 2rmg_A Urocortin-2; CRF ligand 26.9 3.1 0.00011 23.2 -2.6 10 78-87 2-11 (38)
15 2rmh_A Urocortin-3; CRF ligand 25.7 2.6 9E-05 23.5 -3.1 10 78-87 2-11 (38)
16 2xhz_A KDSD, YRBH, arabinose 5 24.3 73 0.0025 22.2 3.6 91 7-109 51-150 (183)
17 1x92_A APC5045, phosphoheptose 24.3 54 0.0018 23.3 2.9 55 49-111 115-172 (199)
18 2yva_A DNAA initiator-associat 24.2 54 0.0019 23.2 2.9 54 49-110 111-167 (196)
19 2l66_A SSO7C4, transcriptional 22.0 25 0.00087 20.3 0.6 16 124-139 12-27 (53)
20 2h3h_A Sugar ABC transporter, 21.7 2.5E+02 0.0085 20.8 6.6 34 48-84 58-91 (313)
21 2yci_X 5-methyltetrahydrofolat 21.2 1E+02 0.0035 23.9 4.2 31 18-58 148-179 (271)
22 1jeo_A MJ1247, hypothetical pr 21.1 74 0.0025 22.1 3.1 89 7-108 42-134 (180)
23 1tk9_A Phosphoheptose isomeras 21.1 69 0.0024 22.4 2.9 54 49-110 112-165 (188)
24 1m3s_A Hypothetical protein YC 21.1 69 0.0024 22.4 2.9 92 7-110 39-134 (186)
25 1xdp_A Polyphosphate kinase; P 20.9 46 0.0016 29.6 2.3 55 2-56 391-458 (687)
26 2ckc_A Chromodomain-helicase-D 20.5 51 0.0017 21.2 1.8 29 56-86 38-66 (80)
27 3g1w_A Sugar ABC transporter; 20.4 2.4E+02 0.0082 20.7 6.1 35 48-85 62-96 (305)
28 1c3g_A Heat shock protein 40; 20.1 94 0.0032 22.2 3.5 69 77-146 36-114 (170)
No 1
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=100.00 E-value=2.4e-42 Score=276.12 Aligned_cols=151 Identities=39% Similarity=0.811 Sum_probs=136.0
Q ss_pred CcceeEEEEeCCC-ChHHHHHHHHHHHhCCCceec--CCCC--CC--CCccEEEEeeecCCCCCCCCchHHHHHHHHhcC
Q psy16096 2 FGYEPEIYYPKPP-SKELYVNLLHQCKSLDIPVSE--SLPA--ET--SVFHLIVDAIFGFSYKPPLRELFVPVINLFKST 74 (154)
Q Consensus 2 ~G~~V~v~~~~~~-~~~~~~~~~~~~~~~g~~~~~--~~~~--~l--~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~ 74 (154)
+||+|+|++++.+ .+++++.++++++++|+++.. +... .+ .++|+|||||||||++|+++++++++|+++|++
T Consensus 84 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~dliIDaLfG~Gl~~~l~~~~~~~I~~iN~~ 163 (246)
T 1jzt_A 84 FGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVLSQDEGNWLEYLKPEKTLCIVDAIFGFSFKPPMREPFKGIVEELCKV 163 (246)
T ss_dssp TTCCEEEECCCCCTTCHHHHHHHHHHHHTTCCEECSSTTCGGGGGSTTTEEEEEEESCCTTCCSSCCTTHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHHHcCCcEEeccchhhhhhcccCCCcEEEEecccCCCCCCCcHHHHHHHHHHHhc
Confidence 6999999988763 347888889999999988753 2211 12 468999999999999999999999999999999
Q ss_pred C--CCeEEEEcCCCCCCCCCCcc-cccccCeEEEccccccccccc--CCCccceEeEEeChhhHHhhCCCCCCCCCCccE
Q psy16096 75 K--IPVVSIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCAHKF--EGKHHFLGGRFIPKQLEKEYDLNLPPYKGTDTY 149 (154)
Q Consensus 75 ~--~~vvSiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~~~~--~g~~~~~g~~~iP~~~~~~~~~~~p~~~g~~~~ 149 (154)
+ ++|+|||||||||+|||++. .+|+||+||||+++|+||+++ +|+++|||+++||+.+++++++++|+|.|+|++
T Consensus 164 ~~~~~vvAvDiPSGl~~dtG~~~g~av~Ad~TvTf~~~K~gl~~~~~~g~~~~~G~~~vP~~~~~~~~~~~p~y~~~~~~ 243 (246)
T 1jzt_A 164 QNIIPIVSVDVPTGWDVDKGPISQPSINPAVLVSLTVPKPCSSHIRENQTTHYVGGRFIPRDFANKFGFEPFGYESTDQI 243 (246)
T ss_dssp TTTSCEEEESSCTTSBTTTBCCSSSCCCCSEEEEESSCCGGGGGSCTTTCEEEEECCCCCHHHHHHTTCCCCCCCTTCSE
T ss_pred CCCCCEEEEECCCCccCCCCCcCCCeEcCCEEEECcchHHHHcCCccCCccceECCeeeCHHHHHhcCccCCCCCCcceE
Confidence 8 99999999999999999988 899999999999999999999 888679999999999999999999999999999
Q ss_pred Eec
Q psy16096 150 VKI 152 (154)
Q Consensus 150 ~~~ 152 (154)
|+|
T Consensus 244 ~~~ 246 (246)
T 1jzt_A 244 LKL 246 (246)
T ss_dssp EEC
T ss_pred EeC
Confidence 987
No 2
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=100.00 E-value=1.3e-41 Score=274.38 Aligned_cols=151 Identities=50% Similarity=0.984 Sum_probs=136.5
Q ss_pred CcceeEEEEeCCCChHHHHHHHHHHHhCCCceecCCCCC---C-CCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCC
Q psy16096 2 FGYEPEIYYPKPPSKELYVNLLHQCKSLDIPVSESLPAE---T-SVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIP 77 (154)
Q Consensus 2 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l-~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~ 77 (154)
+||+|+|++++.+.+++++.++++++++|+++..+++.. + ..+|+|||||||||++|+++++++++|+++|+++++
T Consensus 105 ~G~~V~V~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~dlIIDALfGtGl~~~l~~~~~~lI~~iN~~~~~ 184 (265)
T 2o8n_A 105 FGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVP 184 (265)
T ss_dssp TTCEEEEECCSCCSSHHHHHHHHHHHHTTCCBCSSCCSSHHHHHHHCSEEEEESCCTTCCCCCCTTHHHHHHHHHTCSSC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCcEEecccchhhhccCCCcEEEEeeccCCCCCCCcHHHHHHHHHHHhcCCC
Confidence 699999998876555888889999999998865322211 2 258999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCcccccccCeEEEcccccccccccCCCccceEeEEeChhhHHhhCCCCCCCCCCccEEecC
Q psy16096 78 VVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFIPKQLEKEYDLNLPPYKGTDTYVKID 153 (154)
Q Consensus 78 vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~iP~~~~~~~~~~~p~~~g~~~~~~~~ 153 (154)
|+|||||||+|+|||++. +|+||+||||+++|+|+++++|+++|||++++|+.+++++++++|.|.|+|.+|+|.
T Consensus 185 VvAVDIPSGldadtG~~~-av~Ad~TVTf~~~K~g~~~~~g~~~~~G~~~vP~~l~~k~~l~lp~y~~~~~~~~~~ 259 (265)
T 2o8n_A 185 IASIDIPSGWDVEKGNPS-GIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 259 (265)
T ss_dssp EEEESSCTTSBTTTBCTT-SCCCSEEEEESSCBGGGGGCCSSEEEEECCCCCHHHHHHTTCCCCCCCTTCSEEECC
T ss_pred EEEEeCCCCcccCCCCcC-eeeCCEEEECCchhhhhcCCCCccceECCeecCHHHHHHhCCCCCCCCCcceEEEee
Confidence 999999999999999887 999999999999999999999987899999999999999999999999999999985
No 3
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=100.00 E-value=1.5e-33 Score=244.49 Aligned_cols=134 Identities=22% Similarity=0.292 Sum_probs=120.6
Q ss_pred CCcceeEEEEeCCCChHHHHHHHHHHHhCCCceecC-CCCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeE
Q psy16096 1 MFGYEPEIYYPKPPSKELYVNLLHQCKSLDIPVSES-LPAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVV 79 (154)
Q Consensus 1 ~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vv 79 (154)
++||+|+||+++.+.+++++.++++++++|+++..+ +...+.++|+|||||||||++|+++++++++|+++|+++++|+
T Consensus 77 ~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~dliVDalfG~Gl~~~l~~~~~~~i~~iN~~~~~vv 156 (502)
T 3rss_A 77 GVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVEQFEPSILNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVV 156 (502)
T ss_dssp TTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEESCCCGGGGGGCSEEEEESCSTTCCSCCCHHHHHHHHHHHTTCCEEE
T ss_pred HCCCeEEEEEECCCCCHHHHHHHHHHHhCCCceecccccccCCCCCEEEEeCccCCCCCCCcHHHHHHHHHHHcCCCCEE
Confidence 369999999998776688889999999999988742 2223567899999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCcc-cccccCeEEEcccccccccccCCCccceEeEE-----eChhhHHh
Q psy16096 80 SIDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRF-----IPKQLEKE 135 (154)
Q Consensus 80 SiDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~-----iP~~~~~~ 135 (154)
|||||||+|+|||++. .+|+||+||||+++|+|+++++++ +|||++. ||+.+++.
T Consensus 157 AvDiPSGl~~dtG~~~g~av~Ad~Tvtf~~~K~gl~~~~g~-~~~G~v~v~dIGip~~~~~~ 217 (502)
T 3rss_A 157 SVDVPSGIDSNTGKVLRTAVKADLTVTFGVPKIGHILFPGR-DLTGKLKVANIGHPVHLINS 217 (502)
T ss_dssp EESSCTTBCTTTCCBSSCCCCCSEEEEESSCCHHHHSTTHH-HHHCEEEEECCSCCHHHHTT
T ss_pred EecCCCCccCCCCCcCCCeeeCCEEEECcchHHHHhccchh-hccceEEEEcCCCChHHhhc
Confidence 9999999999999988 899999999999999999999999 9999998 68877654
No 4
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=99.97 E-value=3.1e-31 Score=228.61 Aligned_cols=127 Identities=16% Similarity=0.253 Sum_probs=113.4
Q ss_pred ceeEEEEeCCCChHHHHHHHHHHHhCCCceecCC---CCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEE
Q psy16096 4 YEPEIYYPKPPSKELYVNLLHQCKSLDIPVSESL---PAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVS 80 (154)
Q Consensus 4 ~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvS 80 (154)
|+|+|++++++.+++++.++++++++|+++.... ...+.++|+|||||||||++|+++++++ |+++|+++++|+|
T Consensus 73 ~~V~v~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~dliIDaLfGtGl~~~l~~~~~--I~~iN~~~~~vvA 150 (475)
T 3k5w_A 73 FRVLVFEMKLTKSPMCQLQKERAKKAGVVIKTYEENALNQNLECDVLIDCVIGSHFKGKLEPFLN--FESLSQKARFKIA 150 (475)
T ss_dssp BEEEEEESSCCCSHHHHHHHHHHHHTTCEEEECCCC----CCCEEEEEEESCCTTCCSCCCTTCC--HHHHTTTEEEEEE
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHCCCcEeccccccccccCCCCEEEEeccCCCCCCCCChHHH--HHHHHhCCCCEEE
Confidence 8999999987777889999999999999876421 1235679999999999999999999999 9999999999999
Q ss_pred EEcCCCCCCCCCCcc-cccccCeEEEcccccccccccCCCccceEeEE-----eChhhHH
Q psy16096 81 IDIPSGWNVEHGPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRF-----IPKQLEK 134 (154)
Q Consensus 81 iDiPSGld~dtG~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~-----iP~~~~~ 134 (154)
||||||+|+| |++. .+|+||+||||+++|+|+++++++ +|||++. ||+.+++
T Consensus 151 vDiPSGl~~d-G~~~g~av~Ad~TvTf~~~K~gl~~~~~~-~~~G~v~v~dIGip~~~~~ 208 (475)
T 3k5w_A 151 CDIPSGIDSK-GRVDKRAFKADLTISMGAIKSCLLSDRAK-DYVGELKVGHLGVFNPIYE 208 (475)
T ss_dssp ESSCTTBCTT-SCBCTTCCCCSEEEEESSEEGGGGCGGGH-HHHCEEEEECCSSCHHHHC
T ss_pred EECCCCCCCC-CCcCCceeeCCEEEECcChHHHhcCcchH-hhcCCeEEeCCCCChHHhc
Confidence 9999999999 9888 899999999999999999999999 9999998 6887654
No 5
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=201.84 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=113.9
Q ss_pred CcceeEEEEeCCCC-hHHHHHHHHHHHhCCCceecCCCCCC--CCccEEEEeeecCCCCCCCC--chHHHHHHHHhcCCC
Q psy16096 2 FGYEPEIYYPKPPS-KELYVNLLHQCKSLDIPVSESLPAET--SVFHLIVDAIFGFSYKPPLR--ELFVPVINLFKSTKI 76 (154)
Q Consensus 2 ~G~~V~v~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~dlIVDalfGtG~~~~l~--~~~~~li~~iN~~~~ 76 (154)
+||+|+|++++.+. .++++.++++++++|+++... ...+ ..+|+||||| |||++++++ ++++++|+++|++++
T Consensus 158 ~G~~V~V~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~l~~~~~dlIIDAL-G~G~~~~l~~~~~~~~lI~~iN~~~~ 235 (306)
T 3d3j_A 158 HDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSS-LKDLPTSPVDLVINCL-DCPENVFLRDQPWYKAAVAWANQNRA 235 (306)
T ss_dssp TTCEEEEECCCCSSCCHHHHHHHHHHHTSSCEEESC-STTSCSSCCSEEEEEC-CCTTCGGGGGCHHHHHHHHHHHHSCC
T ss_pred CCCcEEEEEecCCCCCHHHHHHHHHHHHcCCccccc-hhhhccCCCCEEEECC-CCCCCCccCcchHHHHHHHHHHhcCC
Confidence 69999999887543 377888999999999876532 1223 3689999999 999999999 899999999999999
Q ss_pred CeEEEEcCCCCCCCCCCcccccccCeEEEcccccccccccCCCccceEeEE-----eChhhHHhhCCCCCCCCCCccEEe
Q psy16096 77 PVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLCAHKFEGKHHFLGGRF-----IPKQLEKEYDLNLPPYKGTDTYVK 151 (154)
Q Consensus 77 ~vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~-----iP~~~~~~~~~~~p~~~g~~~~~~ 151 (154)
+|+|||||||+. + .+|+||+||||+++|. ++ +|||+++ ||+.++++++.+++.++|++.++.
T Consensus 236 ~VvAVDiPSGl~---~---~av~Ad~TvTf~~~K~------~~-~~~G~v~v~dIGip~~~~~~~~~~~~~~~g~~~vi~ 302 (306)
T 3d3j_A 236 PVLSIDPPVHEV---E---QGIDAKWSLALGLPLP------LG-EHAGRIYLCDIGIPQQVFQEVGINYHSPFGCKFVIP 302 (306)
T ss_dssp CEEEESCCCC-----------CCCSEEEEESSCCC------CC-GGGCEEEEECCCCCHHHHHHTTCBCCCTTTTCSEEE
T ss_pred CEEEEECCCCCC---C---CceecCEEEEcCcccc------hh-hhCCEEEEECCCCCHHHHhhcCcccCCCCCCceeEe
Confidence 999999999992 2 5899999999999996 45 6666665 899999999999999999999998
Q ss_pred cC
Q psy16096 152 ID 153 (154)
Q Consensus 152 ~~ 153 (154)
|.
T Consensus 303 l~ 304 (306)
T 3d3j_A 303 LH 304 (306)
T ss_dssp CB
T ss_pred cc
Confidence 74
No 6
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=196.62 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=113.1
Q ss_pred CcceeEEEEeCCCC-hHHHHHHHHHHHhCCCceecCCCCCC--CCccEEEEeeecCCCCCCCC--chHHHHHHHHhcCCC
Q psy16096 2 FGYEPEIYYPKPPS-KELYVNLLHQCKSLDIPVSESLPAET--SVFHLIVDAIFGFSYKPPLR--ELFVPVINLFKSTKI 76 (154)
Q Consensus 2 ~G~~V~v~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~dlIVDalfGtG~~~~l~--~~~~~li~~iN~~~~ 76 (154)
+||+|+|++++.+. .++++.++++++++|+++... ...+ .++|+||||| |||++++++ ++++++|+++|++++
T Consensus 111 ~G~~V~v~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~l~~~~~dlIVDAL-G~G~~~~l~~~~~~~~lI~~iN~~~~ 188 (259)
T 3d3k_A 111 HDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSS-LKDLPTSPVDLVINCL-DCPENVFLRDQPWYKAAVAWANQNRA 188 (259)
T ss_dssp TTCEEEEECCBCSSCCHHHHHHHHHHTTSSCEEESC-GGGSCSSCCSEEEEEC-CCTTCTTGGGSHHHHHHHHHHHHHCS
T ss_pred CCCeEEEEEecCCCCCHHHHHHHHHHHHcCCCcccc-hhhhccCCCCEEEECC-CCCCCCccCcchHHHHHHHHHHhCCC
Confidence 69999999887543 377888999999999876531 1123 3689999999 999999999 899999999999999
Q ss_pred CeEEEEcCCCCCCCCCCcccccccCeEEEcccccccccccCCCccceEeEE-----eChhhHHhhCCCCCCCCCCccEEe
Q psy16096 77 PVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLCAHKFEGKHHFLGGRF-----IPKQLEKEYDLNLPPYKGTDTYVK 151 (154)
Q Consensus 77 ~vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~-----iP~~~~~~~~~~~p~~~g~~~~~~ 151 (154)
+|+|||||||++ + .+|+||+||||+++|. ++ +|||+++ ||+.++++++.+.+.++|.+.++.
T Consensus 189 ~vvAVDiPSGl~---~---~~v~Ad~TvTf~~~K~------~~-~~~G~~~v~diGip~~~~~~~~~~~~~~fg~~~vv~ 255 (259)
T 3d3k_A 189 PVLSIDPPVHEV---E---QGIDAKWSLALGLPLP------LG-EHAGRIYLCDIGIPQQVFQEVGINYHSPFGCKFVIP 255 (259)
T ss_dssp CEEEESCCCC-----------CCCSEEEEESSCCC------CC-GGGCEEEEECCCCCHHHHHHTTCBCCCSCTTCSEEE
T ss_pred CEEEEECCCCCC---C---CceeccEEEEcCcccc------hh-hhCCEEEEECCCCCHHHHhhcCcccCCCCCCceEEE
Confidence 999999999992 2 4899999999999996 45 6666665 899999999999999999999988
Q ss_pred cC
Q psy16096 152 ID 153 (154)
Q Consensus 152 ~~ 153 (154)
|-
T Consensus 256 l~ 257 (259)
T 3d3k_A 256 LH 257 (259)
T ss_dssp EB
T ss_pred ee
Confidence 73
No 7
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=40.59 E-value=14 Score=22.23 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.3
Q ss_pred eEeEEeChhhHHhhCCCC
Q psy16096 123 LGGRFIPKQLEKEYDLNL 140 (154)
Q Consensus 123 ~g~~~iP~~~~~~~~~~~ 140 (154)
-|++.||+++.++++++-
T Consensus 21 kGqItIPkeiR~~Lgi~~ 38 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAE 38 (59)
T ss_dssp TCEEECCHHHHHHTTCCT
T ss_pred CCEEEeCHHHHHHcCCCC
Confidence 388999999999988763
No 8
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=30.42 E-value=69 Score=24.43 Aligned_cols=69 Identities=9% Similarity=0.090 Sum_probs=45.8
Q ss_pred CeEEEEcCCCCCCCC-------CCcc-cccccCeEEEcccccccccccCCCccceEeEEeC-hhhHHhhCCCCCCCCCC
Q psy16096 77 PVVSIDIPSGWNVEH-------GPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFIP-KQLEKEYDLNLPPYKGT 146 (154)
Q Consensus 77 ~vvSiDiPSGld~dt-------G~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~iP-~~~~~~~~~~~p~~~g~ 146 (154)
..+.|+||.|++..+ |+.. .....|+.|.+...+...|.-.|. +..-.+-|+ .+++--+.+.+|.++|.
T Consensus 112 ~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~-DL~~~~~Isl~eAllG~~i~v~tldG~ 189 (248)
T 1nlt_A 112 KILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGD-DLVYEAEIDLLTAIAGGEFALEHVSGD 189 (248)
T ss_dssp EEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETT-EEEEEEEEEHHHHHHCBCCEEECSSSC
T ss_pred EEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCC-EEEEEEEeCHHHHhcCCEEEEeCCCCC
Confidence 579999999987542 1111 234579999999888888888887 666666653 22223355667777774
No 9
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=30.05 E-value=60 Score=22.72 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=55.9
Q ss_pred EEEEeCCCCh-HHHHHHHHHHHhCCCceec-C-CC-------CCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCC
Q psy16096 7 EIYYPKPPSK-ELYVNLLHQCKSLDIPVSE-S-LP-------AETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKI 76 (154)
Q Consensus 7 ~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~-~-~~-------~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~ 76 (154)
+|+++|...+ ..+......+...|.++.. . .. ..+.+- |.++.+..+|.- ....++++.+.+.+.
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~----d~~i~iS~sG~t-~~~~~~~~~ak~~g~ 115 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPT----DLMIGVSVWRYL-RDTVAALAGAAERGV 115 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTT----EEEEEECCSSCC-HHHHHHHHHHHHTTC
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCC----CEEEEEeCCCCC-HHHHHHHHHHHHCCC
Confidence 5666665544 3334344456667776543 1 11 123344 456778888874 456668888888899
Q ss_pred CeEEEEcCCCCCCCCCCcccccccCeEEEccccccc
Q psy16096 77 PVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPKLC 112 (154)
Q Consensus 77 ~vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K~g 112 (154)
++++|==..+ . ..+=.||+++........
T Consensus 116 ~vi~IT~~~~------s-~l~~~ad~~l~~~~~~~~ 144 (187)
T 3sho_A 116 PTMALTDSSV------S-PPARIADHVLVAATRGVG 144 (187)
T ss_dssp CEEEEESCTT------S-HHHHHCSEEEECCCCCSS
T ss_pred CEEEEeCCCC------C-cchhhCcEEEEecCCCCc
Confidence 9999842211 1 134468999888765543
No 10
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=29.83 E-value=27 Score=25.43 Aligned_cols=37 Identities=11% Similarity=0.280 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCCCCCCC--cc--------cccccCeEEEccccccc
Q psy16096 76 IPVVSIDIPSGWNVEHGP--VE--------HKYQPHTLISLTAPKLC 112 (154)
Q Consensus 76 ~~vvSiDiPSGld~dtG~--~~--------~~v~Ad~Tvtf~~~K~g 112 (154)
-+.++||+|-||...+.- .. ..|+++.+||+...--.
T Consensus 17 ~p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~~ 63 (161)
T 3lyd_A 17 LTGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAATG 63 (161)
T ss_dssp CCEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECTT
T ss_pred CceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCcH
Confidence 368999999999988552 11 24888888888765543
No 11
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=29.47 E-value=72 Score=23.09 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=43.6
Q ss_pred CeEEEEcCCCCCCCC-------CCcc-cccccCeEEEcccccccccccCCCccceEeEEeCh-hhHHhhCCCCCCCCCC
Q psy16096 77 PVVSIDIPSGWNVEH-------GPVE-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFIPK-QLEKEYDLNLPPYKGT 146 (154)
Q Consensus 77 ~vvSiDiPSGld~dt-------G~~~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~iP~-~~~~~~~~~~p~~~g~ 146 (154)
..+.|+||.|+...+ |+.. ..-..|+.+.+.......|.-.|. +..-.+.|+- +++--....+|.++|.
T Consensus 43 ~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~-DL~~~~~Isl~eAllG~~i~v~tldG~ 120 (181)
T 3agx_A 43 KILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGS-DVIYPARISLREALCGCTVNVPTLDGR 120 (181)
T ss_dssp EEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETT-EEEEEEEEEHHHHHHCEEEEEECTTSC
T ss_pred EEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCC-cEEEEEEcCHHHHhCCCEEEeECCCCC
Confidence 579999999987432 1111 234579999998888888877777 5555555432 2222244556666664
No 12
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=29.44 E-value=1.6e+02 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=24.3
Q ss_pred EEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy16096 48 VDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPS 85 (154)
Q Consensus 48 VDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPS 85 (154)
+|||+=.+...+........++.+.+.+.|+|.+|-+.
T Consensus 72 vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 109 (298)
T 3tb6_A 72 IDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASY 109 (298)
T ss_dssp CSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCC
T ss_pred CCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCc
Confidence 45554445444433344567777778889999998653
No 13
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=26.89 E-value=74 Score=22.95 Aligned_cols=69 Identities=12% Similarity=0.206 Sum_probs=44.1
Q ss_pred CeEEEEcCCCCCCCC-------CCc-c-cccccCeEEEcccccccccccCCCccceEeEEeCh-hhHHhhCCCCCCCCCC
Q psy16096 77 PVVSIDIPSGWNVEH-------GPV-E-HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFIPK-QLEKEYDLNLPPYKGT 146 (154)
Q Consensus 77 ~vvSiDiPSGld~dt-------G~~-~-~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~iP~-~~~~~~~~~~p~~~g~ 146 (154)
..+.|+||.|+...+ |+. . .....|+.+.+.......|.-.|. +....+-|+- ++.--+...+|.++|.
T Consensus 42 ~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~-DL~~~~~Isl~eAllG~~i~v~tldG~ 120 (180)
T 2q2g_A 42 NIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDC-HLIMKVTIPLVRALTGFTCPVTTLDNR 120 (180)
T ss_dssp EEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETT-EEEEEEEEEHHHHHHCEEEEEECTTCC
T ss_pred EEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCC-EEEEEEEcCHHHHhCCCEEEeeCCCCC
Confidence 579999999987432 222 1 234569999998888788877777 5555555432 2222344556777765
No 14
>2rmg_A Urocortin-2; CRF ligand, sauvagine, astressin, urotensins, CRF receptors, hormone, secreted; NMR {Synthetic}
Probab=26.89 E-value=3.1 Score=23.18 Aligned_cols=10 Identities=50% Similarity=0.989 Sum_probs=7.2
Q ss_pred eEEEEcCCCC
Q psy16096 78 VVSIDIPSGW 87 (154)
Q Consensus 78 vvSiDiPSGl 87 (154)
.+|+|+|.++
T Consensus 2 ~lSlDvp~~L 11 (38)
T 2rmg_A 2 VLSLDVPIGL 11 (38)
T ss_dssp CSCCSTTHHH
T ss_pred eeeeeccHHH
Confidence 4688888764
No 15
>2rmh_A Urocortin-3; CRF ligand, sauvagine, astressin2B, urotensins, CRF receptors, amidation, hormone, secreted; NMR {Synthetic}
Probab=25.66 E-value=2.6 Score=23.49 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=6.7
Q ss_pred eEEEEcCCCC
Q psy16096 78 VVSIDIPSGW 87 (154)
Q Consensus 78 vvSiDiPSGl 87 (154)
.+|+|+|.++
T Consensus 2 ~lSlDvp~~l 11 (38)
T 2rmh_A 2 TLSLDVPTNI 11 (38)
T ss_dssp GGGCCCCHHH
T ss_pred eeeeeccHHH
Confidence 4677887764
No 16
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=24.32 E-value=73 Score=22.15 Aligned_cols=91 Identities=8% Similarity=0.039 Sum_probs=51.5
Q ss_pred EEEEeCCCCh-HHHHHHHHHHHhCCCceecCC--------CCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCC
Q psy16096 7 EIYYPKPPSK-ELYVNLLHQCKSLDIPVSESL--------PAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIP 77 (154)
Q Consensus 7 ~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~--------~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~ 77 (154)
+|++.|...+ ..++.....+...|.+..... ...+.+-|+ ++.+..+|.- ....++++.+++.+.+
T Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~----vI~iS~sG~t-~~~~~~~~~ak~~g~~ 125 (183)
T 2xhz_A 51 KVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDV----VIAISNSGES-SEITALIPVLKRLHVP 125 (183)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCE----EEEECSSSCC-HHHHHHHHHHHTTTCC
T ss_pred eEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCE----EEEEeCCCCC-HHHHHHHHHHHHCCCC
Confidence 3455554433 233333445666776653210 012344544 5677777764 4456788888888999
Q ss_pred eEEEEcCCCCCCCCCCcccccccCeEEEcccc
Q psy16096 78 VVSIDIPSGWNVEHGPVEHKYQPHTLISLTAP 109 (154)
Q Consensus 78 vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~ 109 (154)
+++|==. .....+=.||+++.....
T Consensus 126 vi~IT~~-------~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 126 LICITGR-------PESSMARAADVHLCVKVA 150 (183)
T ss_dssp EEEEESC-------TTSHHHHHSSEEEECCCS
T ss_pred EEEEECC-------CCChhHHhCCEEEEeCCC
Confidence 9998211 111134468998888753
No 17
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=24.27 E-value=54 Score=23.33 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=36.4
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcccccc---cCeEEEcccccc
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHKYQ---PHTLISLTAPKL 111 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~~~v~---Ad~Tvtf~~~K~ 111 (154)
|.++++..+|.- ....++++.+++.+.++++|= +- .+. ..+=. ||+++.......
T Consensus 115 DvvI~iS~SG~t-~~~i~~~~~ak~~g~~vI~IT---~~---~~s-~La~~~~~ad~~l~~~~~~~ 172 (199)
T 1x92_A 115 DVLLAISTSGNS-ANVIQAIQAAHDREMLVVALT---GR---DGG-GMASLLLPEDVEIRVPSKIT 172 (199)
T ss_dssp CEEEEECSSSCC-HHHHHHHHHHHHTTCEEEEEE---CT---TCH-HHHHHCCTTCEEEECSCSCH
T ss_pred CEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEE---CC---CCC-cHHhccccCCEEEEeCCCch
Confidence 445788888874 445568888999999999982 21 111 13445 898888776443
No 18
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=24.19 E-value=54 Score=23.20 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=34.8
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcccccc---cCeEEEccccc
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHKYQ---PHTLISLTAPK 110 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~~~v~---Ad~Tvtf~~~K 110 (154)
|.++++..+|.- ....++++.+++.+.++++|==.. +.. .+=. ||+++......
T Consensus 111 DvvI~iS~SG~t-~~~i~~~~~ak~~g~~vI~IT~~~------~s~-la~~~~~ad~~l~~~~~~ 167 (196)
T 2yva_A 111 DVLLAISTRGNS-RDIVKAVEAAVTRDMTIVALTGYD------GGE-LAGLLGPQDVEIRIPSHR 167 (196)
T ss_dssp CEEEEECSSSCC-HHHHHHHHHHHHTTCEEEEEECTT------CHH-HHTTCCTTSEEEECSCSC
T ss_pred CEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCC------Cch-hhhcccCCCEEEEeCCCC
Confidence 456788888874 445568888888899999982211 111 1212 88888776543
No 19
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=22.02 E-value=25 Score=20.26 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=14.0
Q ss_pred EeEEeChhhHHhhCCC
Q psy16096 124 GGRFIPKQLEKEYDLN 139 (154)
Q Consensus 124 g~~~iP~~~~~~~~~~ 139 (154)
|++.||+++.++++++
T Consensus 12 gqi~IPk~ir~~lgi~ 27 (53)
T 2l66_A 12 YQVTIPAKVRQKFQIK 27 (53)
T ss_dssp SCBCCCHHHHHHSCCC
T ss_pred CEEEeCHHHHHHcCcC
Confidence 7788999999998876
No 20
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=21.74 E-value=2.5e+02 Score=20.81 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=20.7
Q ss_pred EEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcC
Q psy16096 48 VDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIP 84 (154)
Q Consensus 48 VDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiP 84 (154)
+|||+-.+... ......++.+.+.+.|+|.+|-+
T Consensus 58 vdgiIi~~~~~---~~~~~~~~~~~~~~iPvV~~~~~ 91 (313)
T 2h3h_A 58 VNGIAIAPSDP---TAVIPTIKKALEMGIPVVTLDTD 91 (313)
T ss_dssp CSEEEECCSST---TTTHHHHHHHHHTTCCEEEESSC
T ss_pred CCEEEEeCCCh---HHHHHHHHHHHHCCCeEEEeCCC
Confidence 44554444332 22345667777778999999865
No 21
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=21.20 E-value=1e+02 Score=23.85 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCceecCCCCCCCCccEEEEeeecC-CCCC
Q psy16096 18 LYVNLLHQCKSLDIPVSESLPAETSVFHLIVDAIFGF-SYKP 58 (154)
Q Consensus 18 ~~~~~~~~~~~~g~~~~~~~~~~l~~~dlIVDalfGt-G~~~ 58 (154)
.++...+.+.++|+ .+-++|+|-.+|+ |...
T Consensus 148 ~l~~~~~~a~~~Gi----------~~~~IilDPg~gfigk~~ 179 (271)
T 2yci_X 148 LAMELVANADAHGI----------PMTELYIDPLILPVNVAQ 179 (271)
T ss_dssp HHHHHHHHHHHTTC----------CGGGEEEECCCCCTTTST
T ss_pred HHHHHHHHHHHCCC----------CcccEEEecCCCccccCH
Confidence 34444556666663 3457999999987 6654
No 22
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.13 E-value=74 Score=22.11 Aligned_cols=89 Identities=11% Similarity=-0.051 Sum_probs=51.3
Q ss_pred EEEEeCCCCh-HHHHHHHHHHHhCCCceec--CC-CCCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEE
Q psy16096 7 EIYYPKPPSK-ELYVNLLHQCKSLDIPVSE--SL-PAETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSID 82 (154)
Q Consensus 7 ~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~-~~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiD 82 (154)
+|++.|...+ ..+......+...|.+... +. ...+.+-|+ ++.+..+|.- ....++++.+++.++++++|=
T Consensus 42 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~----vi~iS~sG~t-~~~~~~~~~ak~~g~~vi~IT 116 (180)
T 1jeo_A 42 KIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDL----LILISGSGRT-ESVLTVAKKAKNINNNIIAIV 116 (180)
T ss_dssp SEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCE----EEEEESSSCC-HHHHHHHHHHHTTCSCEEEEE
T ss_pred EEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCE----EEEEeCCCCc-HHHHHHHHHHHHCCCcEEEEe
Confidence 3556665433 3333334455667766543 11 112444554 4566777764 456678888888899999993
Q ss_pred cCCCCCCCCCCcccccccCeEEEccc
Q psy16096 83 IPSGWNVEHGPVEHKYQPHTLISLTA 108 (154)
Q Consensus 83 iPSGld~dtG~~~~~v~Ad~Tvtf~~ 108 (154)
=.. + . .+=.||.++....
T Consensus 117 ~~~----~--s--l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 117 CEC----G--N--VVEFADLTIPLEV 134 (180)
T ss_dssp SSC----C--G--GGGGCSEEEECCC
T ss_pred CCC----C--h--HHHhCCEEEEeCC
Confidence 211 1 1 2346888888776
No 23
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=21.08 E-value=69 Score=22.36 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=35.0
Q ss_pred EeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCCCcccccccCeEEEccccc
Q psy16096 49 DAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHKYQPHTLISLTAPK 110 (154)
Q Consensus 49 DalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPSGld~dtG~~~~~v~Ad~Tvtf~~~K 110 (154)
|.++++..+|.- ....++++.+.+.+.++++|==..+ .. .+=.||+++......
T Consensus 112 Dvvi~iS~sG~t-~~~~~~~~~ak~~g~~vi~iT~~~~------s~-L~~~ad~~l~~~~~~ 165 (188)
T 1tk9_A 112 DVLIGISTSGKS-PNVLEALKKAKELNMLCLGLSGKGG------GM-MNKLCDHNLVVPSDD 165 (188)
T ss_dssp CEEEEECSSSCC-HHHHHHHHHHHHTTCEEEEEEEGGG------TT-HHHHCSEEEEESCSC
T ss_pred CEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCC------cc-hHHcCCEEEEeCCCC
Confidence 445788888875 4456788888888899999822111 11 244588888665433
No 24
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.07 E-value=69 Score=22.41 Aligned_cols=92 Identities=8% Similarity=-0.064 Sum_probs=52.6
Q ss_pred EEEEeCCCCh-HHHHHHHHHHHhCCCceec--CCC-CCCCCccEEEEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEE
Q psy16096 7 EIYYPKPPSK-ELYVNLLHQCKSLDIPVSE--SLP-AETSVFHLIVDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSID 82 (154)
Q Consensus 7 ~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~~-~~l~~~dlIVDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiD 82 (154)
+|++.|...+ ..+......+...|.+... +.. ..+.+-| .++.+..+|.- ....++++.+.+.++++++|=
T Consensus 39 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d----~vI~iS~sG~t-~~~~~~~~~ak~~g~~vi~IT 113 (186)
T 1m3s_A 39 QIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGD----LVIIGSGSGET-KSLIHTAAKAKSLHGIVAALT 113 (186)
T ss_dssp CEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTC----EEEEECSSSCC-HHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCC----EEEEEcCCCCc-HHHHHHHHHHHHCCCEEEEEE
Confidence 4556665433 3333334455667766543 111 1234444 44677777775 456678888888899999982
Q ss_pred cCCCCCCCCCCcccccccCeEEEccccc
Q psy16096 83 IPSGWNVEHGPVEHKYQPHTLISLTAPK 110 (154)
Q Consensus 83 iPSGld~dtG~~~~~v~Ad~Tvtf~~~K 110 (154)
+- .....+=.||.++......
T Consensus 114 ---~~----~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 114 ---IN----PESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp ---SC----TTSHHHHHCSEEEECSCCS
T ss_pred ---CC----CCCchHHhCCEEEEeCCcc
Confidence 11 1111344688888776644
No 25
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=20.93 E-value=46 Score=29.58 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=34.1
Q ss_pred CcceeEEEEeCCCCh--HHHHHHHHHHHhCCCceecCCCCC-CCCccEEEE----------eeecCCC
Q psy16096 2 FGYEPEIYYPKPPSK--ELYVNLLHQCKSLDIPVSESLPAE-TSVFHLIVD----------AIFGFSY 56 (154)
Q Consensus 2 ~G~~V~v~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~-l~~~dlIVD----------alfGtG~ 56 (154)
+|.+|+|++.....- .......+.+++.|+.+....+.. .-..-+||| +..|++-
T Consensus 391 rGV~VrVLvd~~a~~~~~~n~~~~~~L~~aGV~V~~~~~~~k~H~Ki~VID~re~~~i~~~a~iGS~N 458 (687)
T 1xdp_A 391 NGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVVRYAHIGTGN 458 (687)
T ss_dssp TTCEEEEEECTTCSSTTTTTTTTTHHHHHHTCEEEECCTTCEECCEEEEEEEEETTEEEEEEEEESSC
T ss_pred cCCEEEEEECCCcccchhhHHHHHHHHHHCCCEEEEecCCccccceEEEEEeccCCeEEEEEEEeCCc
Confidence 688999887653311 112234566777898887543321 334557889 8899864
No 26
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=20.45 E-value=51 Score=21.16 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=21.8
Q ss_pred CCCCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy16096 56 YKPPLRELFVPVINLFKSTKIPVVSIDIPSG 86 (154)
Q Consensus 56 ~~~~l~~~~~~li~~iN~~~~~vvSiDiPSG 86 (154)
+.|+-..+-+.+.+|+.+. +-..+|+|+=
T Consensus 38 L~Ge~AP~~KdL~dWLrqh--P~y~vD~p~f 66 (80)
T 2ckc_A 38 LVGEDAPKNKDLVEWLKLH--PTYTVDMPSY 66 (80)
T ss_dssp ECTTSSCBHHHHHHHHHHC--TTEEESCCCC
T ss_pred cccccCccccCHHHHHHHC--CCcEEecCCc
Confidence 3445556678999999975 5678899984
No 27
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.37 E-value=2.4e+02 Score=20.66 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=22.0
Q ss_pred EEeeecCCCCCCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy16096 48 VDAIFGFSYKPPLRELFVPVINLFKSTKIPVVSIDIPS 85 (154)
Q Consensus 48 VDalfGtG~~~~l~~~~~~li~~iN~~~~~vvSiDiPS 85 (154)
+|||+=.+... ......++.+.+.+.|+|.+|-+.
T Consensus 62 vdgiIi~~~~~---~~~~~~~~~~~~~~iPvV~~~~~~ 96 (305)
T 3g1w_A 62 PAGIAISAIDP---VELTDTINKAVDAGIPIVLFDSGA 96 (305)
T ss_dssp CSEEEECCSST---TTTHHHHHHHHHTTCCEEEESSCC
T ss_pred CCEEEEcCCCH---HHHHHHHHHHHHCCCcEEEECCCC
Confidence 45554444332 234556777777889999998653
No 28
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=20.11 E-value=94 Score=22.16 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=42.6
Q ss_pred CeEEEEcCCCCCCCC-------CCcc--cccccCeEEEcccccccccccCCCccceEeEEeCh-hhHHhhCCCCCCCCCC
Q psy16096 77 PVVSIDIPSGWNVEH-------GPVE--HKYQPHTLISLTAPKLCAHKFEGKHHFLGGRFIPK-QLEKEYDLNLPPYKGT 146 (154)
Q Consensus 77 ~vvSiDiPSGld~dt-------G~~~--~~v~Ad~Tvtf~~~K~g~~~~~g~~~~~g~~~iP~-~~~~~~~~~~p~~~g~ 146 (154)
..+.|+||.|+...+ |+.. ..-..|+.+.+.......|.-.|. +....+-|+- ++.--....+|.++|.
T Consensus 36 ~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~-DL~~~~~Isl~eAllG~~~~v~tldG~ 114 (170)
T 1c3g_A 36 TQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGD-DLIYTLPLSFKESLLGFSKTIQTIDGR 114 (170)
T ss_dssp EEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETT-EEEEEECCBHHHHHHCEEEEEECSSSC
T ss_pred EEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCC-cEeEEEEcCHHHHhCCCeEEeeCCCCC
Confidence 679999999987532 2211 234578999998888777777776 5555554432 2222244445666664
Done!