RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16096
         (154 letters)



>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 243

 Score =  120 bits (301), Expect = 4e-35
 Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 2   FGYEPEIYYPKPPSK-ELYVNLLHQCKSLDIPVSESLPAET------SVFHLIVDAIFGF 54
           FGY P ++YPK   + E Y  L+HQ     +PV                   IVDAIFGF
Sbjct: 81  FGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVLSQDEGNWLEYLKPEKTLCIVDAIFGF 140

Query: 55  SYKPPLRELFVPVINLFKSTK--IPVVSIDIPSGWNVEHGPV-EHKYQPHTLISLTAPKL 111
           S+KPP+RE F  ++      +  IP+VS+D+P+GW+V+ GP+ +    P  L+SLT PK 
Sbjct: 141 SFKPPMREPFKGIVEELCKVQNIIPIVSVDVPTGWDVDKGPISQPSINPAVLVSLTVPKP 200

Query: 112 CAHKF--EGKHHFLGGRFIPKQLEKEYDLNLPPYKGTDTYVKI 152
           C+         H++GGRFIP+    ++      Y+ TD  +K+
Sbjct: 201 CSSHIRENQTTHYVGGRFIPRDFANKFGFEPFGYESTDQILKL 243


>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 211

 Score = 56.8 bits (136), Expect = 3e-11
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 8/146 (5%)

Query: 2   FGYEPEIYYPKPPSKELYVNLLHQCKSLDIPVSESL-PAETSVFHLIVDAIFGFSYKPPL 60
              +  + +                K     V E   P+  + F ++VDAIFG   +  +
Sbjct: 66  VVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVEQFEPSILNEFDVVVDAIFGTGLRGEI 125

Query: 61  RELFVPVINLFKSTKIPVVSIDIPSGWNVEHGPVEHK-YQPHTLISLTAPKLCAHKFEGK 119
              +  +INL   +   VVS+D+PSG +   G V     +    ++   PK+    F G+
Sbjct: 126 TGEYAEIINLVNKSGKVVVSVDVPSGIDSNTGKVLRTAVKADLTVTFGVPKIGHILFPGR 185

Query: 120 HHFLGGRF-----IPKQLEKEYDLNL 140
               G         P  L    +  +
Sbjct: 186 DL-TGKLKVANIGHPVHLINSINRYV 210


>d2pstx1 d.100.2.1 (X:8-68) Uncharacterized protein PA2412
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 61

 Score = 24.6 bits (54), Expect = 1.7
 Identities = 4/15 (26%), Positives = 5/15 (33%)

Query: 79 VSIDIPSGWNVEHGP 93
             +IP GW      
Sbjct: 20 EYKEIPQGWRAAGKS 34


>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1,
           OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 200

 Score = 24.8 bits (54), Expect = 5.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 7   EIYYPKPPSKELYVNLLHQCKSLDIP 32
           +      P+ E+YV L+ +CKS    
Sbjct: 157 QWTPGYKPNPEIYVQLIKECKSRGKE 182


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.142    0.444 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 624,724
Number of extensions: 28225
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 9
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.7 bits)