BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16098
         (99 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QDS|A Chain A, Structure Of Apo Boletus Edulis Lectin
 pdb|3QDS|B Chain B, Structure Of Apo Boletus Edulis Lectin
 pdb|3QDT|A Chain A, Structure Of Boletus Edulis Lectin In Complex With
          T-Antigen Disaccharide
 pdb|3QDT|B Chain B, Structure Of Boletus Edulis Lectin In Complex With
          T-Antigen Disaccharide
 pdb|3QDU|A Chain A, Structure Of Boletus Edulis Lectin In Complex With
          N,N-Diacetyl Chitobiose
 pdb|3QDU|B Chain B, Structure Of Boletus Edulis Lectin In Complex With
          N,N-Diacetyl Chitobiose
 pdb|3QDU|C Chain C, Structure Of Boletus Edulis Lectin In Complex With
          N,N-Diacetyl Chitobiose
 pdb|3QDU|D Chain D, Structure Of Boletus Edulis Lectin In Complex With
          N,N-Diacetyl Chitobiose
 pdb|3QDV|A Chain A, Structure Of The Orthorhombic Form Of The Boletus Edulis
          Lectin In Complex With N-Acetyl Glucosamine And
          N-Acetyl Galactosamine
 pdb|3QDV|B Chain B, Structure Of The Orthorhombic Form Of The Boletus Edulis
          Lectin In Complex With N-Acetyl Glucosamine And
          N-Acetyl Galactosamine
 pdb|3QDW|A Chain A, Structure Of The Hexagonal Form Of The Boletus Edulis
          Lectin In Complex With N-Acetyl Glucosamine And
          N-Acetyl Galactosamine
 pdb|3QDW|B Chain B, Structure Of The Hexagonal Form Of The Boletus Edulis
          Lectin In Complex With N-Acetyl Glucosamine And
          N-Acetyl Galactosamine
 pdb|3QDX|A Chain A, Structure Of The Orthorhombic Form Of The Boletus Edulis
          Lectin In Complex With T-Antigen Disaccharide And
          N,N-Diacetyl Chitobiose
 pdb|3QDX|B Chain B, Structure Of The Orthorhombic Form Of The Boletus Edulis
          Lectin In Complex With T-Antigen Disaccharide And
          N,N-Diacetyl Chitobiose
 pdb|3QDY|A Chain A, Structure Of The Hexagonal Form Of The Boletus Edulis
          Lectin In Complex With T-Antigen Disaccharide And
          N,N-Diacetyl Chitobiose
 pdb|3QDY|B Chain B, Structure Of The Hexagonal Form Of The Boletus Edulis
          Lectin In Complex With T-Antigen Disaccharide And
          N,N-Diacetyl Chitobiose
          Length = 143

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 8  SLGVQSTAGAVPVLNEKGEVTMKKVKVHRY------VSGKRPD 44
          ++G   T+G +  +++KGE+    V VH Y      V+G +P+
Sbjct: 45 TMGGSGTSGVLRFMSDKGELITVAVGVHNYKRWCDVVTGLKPE 87


>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
           (isoform A) Spanning Residues 289 Through 561
          Length = 273

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 20  VLNEKGEVTMKKVKVHRYVSGKRPDY 45
           VLN  G VT   VK  + + G  PDY
Sbjct: 207 VLNFHGRVTQASVKNFQIIHGNDPDY 232


>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
          Length = 265

 Score = 25.8 bits (55), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 20  VLNEKGEVTMKKVKVHRYVSGKRPDY 45
           VLN  G VT   VK  + + G  PDY
Sbjct: 199 VLNFHGRVTQASVKNFQIIHGNDPDY 224


>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
           Phosphatidylinositol 4,5-Bis-Phosphate
          Length = 265

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 20  VLNEKGEVTMKKVKVHRYVSGKRPDY 45
           VLN  G VT   VK  + + G  PDY
Sbjct: 199 VLNFHGRVTQASVKNFQIIHGNDPDY 224


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,551,598
Number of Sequences: 62578
Number of extensions: 74956
Number of successful extensions: 102
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 10
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)