Query psy16098
Match_columns 99
No_of_seqs 77 out of 79
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 20:49:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6f_A Uncharacterized protein 18.1 34 0.0011 25.5 0.6 17 14-32 14-30 (181)
2 3hie_A Protein PSL1, exocyst c 15.7 1.2E+02 0.0042 22.0 3.1 30 5-34 51-88 (171)
3 2rr3_B OSBP, oxysterol-binding 14.2 46 0.0016 19.8 0.4 16 47-62 9-24 (47)
4 4esy_A CBS domain containing m 13.4 72 0.0025 20.6 1.3 12 16-27 50-61 (170)
5 2v2t_A RELB, transcription fac 12.2 98 0.0034 24.2 1.9 26 12-37 34-60 (288)
6 1ug0_A Splicing factor 4; SURP 11.7 1.3E+02 0.0043 19.2 2.0 14 73-86 21-34 (88)
7 2kya_A Patellamide protein; cy 11.4 20 0.00068 20.2 -1.7 20 1-20 3-24 (34)
8 1jb3_A Agrin; neuromuscular ju 11.0 84 0.0029 22.2 1.0 15 27-41 33-47 (131)
9 3k6e_A CBS domain protein; str 10.4 1E+02 0.0034 20.2 1.2 12 16-27 49-60 (156)
10 3ctu_A CBS domain protein; str 10.3 1.1E+02 0.0038 19.1 1.4 16 12-27 112-127 (156)
No 1
>4e6f_A Uncharacterized protein; PF14730 family protein, DUF4468 with TBP-like fold,structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.49A {Bacteroides ovatus}
Probab=18.09 E-value=34 Score=25.46 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=12.0
Q ss_pred cCCceeeeccccceeeeee
Q psy16098 14 TAGAVPVLNEKGEVTMKKV 32 (99)
Q Consensus 14 TAGAvpVrNeKge~smqKv 32 (99)
-|||||.+ .|.+.+.++
T Consensus 14 LaGAVPev--dGKVvFt~~ 30 (181)
T 4e6f_A 14 LVGAVPEV--DGKVVFSKE 30 (181)
T ss_dssp STTSSCEE--TTEEEEEEE
T ss_pred hcCCcccc--CCEEEEEEE
Confidence 38999997 466665544
No 2
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=15.70 E-value=1.2e+02 Score=22.04 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=20.6
Q ss_pred CCCCCCccccCC-------ceeeecc-ccceeeeeeeE
Q psy16098 5 SSGSLGVQSTAG-------AVPVLNE-KGEVTMKKVKV 34 (99)
Q Consensus 5 ~~~~~~i~STAG-------AvpVrNe-Kge~smqKvKV 34 (99)
.+.+||..+..| .+-|+.+ .|++.|.|+|.
T Consensus 51 ps~~Pp~~~~~~~KK~R~L~lav~~~~sgrV~lhK~K~ 88 (171)
T 3hie_A 51 PSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARE 88 (171)
T ss_dssp SSSCCCTTCCGGGEEEEEEEEEECTTCTTCEEEEEEEE
T ss_pred CCCCCCCCCCCCCccceEEEEEEecCCCceEEEEEEEE
Confidence 345666666556 4556654 88999999985
No 3
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=14.19 E-value=46 Score=19.84 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=8.2
Q ss_pred CCCCCCCcchhHHhhh
Q psy16098 47 QGSSDSEDDDDEVVNR 62 (99)
Q Consensus 47 ~~~~sdede~~~fi~k 62 (99)
..+.||||++-.|.+.
T Consensus 9 KGe~SdEDed~EfFDA 24 (47)
T 2rr3_B 9 KGDMSDEDDENEFFDA 24 (47)
T ss_dssp CCCSCCCCCSSCCBCC
T ss_pred cccccccccccccccc
Confidence 3456666544444443
No 4
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=13.45 E-value=72 Score=20.64 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=10.1
Q ss_pred Cceeeeccccce
Q psy16098 16 GAVPVLNEKGEV 27 (99)
Q Consensus 16 GAvpVrNeKge~ 27 (99)
+++||.|+.|++
T Consensus 50 ~~~pVvd~~g~l 61 (170)
T 4esy_A 50 GCAPVVDQNGHL 61 (170)
T ss_dssp SEEEEECTTSCE
T ss_pred eEEEEEcCCccE
Confidence 589999998875
No 5
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A
Probab=12.21 E-value=98 Score=24.17 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=15.1
Q ss_pred cccCCceeeecc-ccceeeeeeeEEEe
Q psy16098 12 QSTAGAVPVLNE-KGEVTMKKVKVHRY 37 (99)
Q Consensus 12 ~STAGAvpVrNe-Kge~smqKvKV~RY 37 (99)
++|+|+||-.+. +..-+.=.||+.-|
T Consensus 34 G~s~Gsi~G~~s~~~~kt~PtVkl~gy 60 (288)
T 2v2t_A 34 GRSAGSILGESSTEASKTQPAIELRDC 60 (288)
T ss_dssp CCCSCCCCBSSCCTTSCCCCCEEEESC
T ss_pred CCCCccccccccCCCCCcCCEEEEecc
Confidence 457888886443 32334555666655
No 6
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=11.68 E-value=1.3e+02 Score=19.22 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=10.2
Q ss_pred CCCChHHHHhhhhc
Q psy16098 73 PFEDPRLRRLTSRK 86 (99)
Q Consensus 73 ~~~DpRLRRL~~r~ 86 (99)
...||.++++....
T Consensus 21 pP~d~~~~~iIdkt 34 (88)
T 1ug0_A 21 PPEGAETRRVIEKL 34 (88)
T ss_dssp SGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 34688999887754
No 7
>2kya_A Patellamide protein; cyclic peptides, patellamides, ribosomal P synthetase, unknown function; NMR {Prochloron didemni}
Probab=11.36 E-value=20 Score=20.19 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=12.8
Q ss_pred CCCCCCCCC-Cccc-cCCceee
Q psy16098 1 MNNYSSGSL-GVQS-TAGAVPV 20 (99)
Q Consensus 1 ~~~~~~~~~-~i~S-TAGAvpV 20 (99)
++||.+.+. ||+- |+|-+|.
T Consensus 3 ~~NllPqq~~Pi~R~t~GqLP~ 24 (34)
T 2kya_A 3 KKNILPQQGQPVIRLTAGQLSS 24 (34)
T ss_dssp CSSCCCSCCTHHHHHHHHHHHH
T ss_pred ccccCcCCCCCceecccccCcH
Confidence 468866443 4655 8887764
No 8
>1jb3_A Agrin; neuromuscular junction, interaction coiled-DOIL proteins with globular proteins, OB-fold, TIMP, cell adhesion; 1.60A {Gallus gallus} SCOP: b.40.3.2 PDB: 1pxu_A 1jc7_A 3i70_A
Probab=10.98 E-value=84 Score=22.19 Aligned_cols=15 Identities=47% Similarity=0.667 Sum_probs=12.1
Q ss_pred eeeeeeeEEEeecCC
Q psy16098 27 VTMKKVKVHRYVSGK 41 (99)
Q Consensus 27 ~smqKvKV~RYv~GK 41 (99)
.---+|+|.||+=||
T Consensus 33 ~ys~~VrV~rv~KG~ 47 (131)
T 1jb3_A 33 TYSCKVRVWRYLKGK 47 (131)
T ss_dssp EEEEEEEEEEEEECH
T ss_pred ceEEEEEEEEEEcCh
Confidence 344689999999997
No 9
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=10.44 E-value=1e+02 Score=20.15 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=9.1
Q ss_pred Cceeeeccccce
Q psy16098 16 GAVPVLNEKGEV 27 (99)
Q Consensus 16 GAvpVrNeKge~ 27 (99)
+++||.++.|++
T Consensus 49 s~~pVvd~~~~l 60 (156)
T 3k6e_A 49 TRVPVVTDEKQF 60 (156)
T ss_dssp SEEEEECC-CBE
T ss_pred cEEEEEcCCCcE
Confidence 589999988764
No 10
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=10.34 E-value=1.1e+02 Score=19.14 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=11.3
Q ss_pred cccCCceeeeccccce
Q psy16098 12 QSTAGAVPVLNEKGEV 27 (99)
Q Consensus 12 ~STAGAvpVrNeKge~ 27 (99)
+...|.+||.++.|++
T Consensus 112 ~~~~~~lpVvd~~g~~ 127 (156)
T 3ctu_A 112 LVDESFLPVVDAEGIF 127 (156)
T ss_dssp TTTSSEEEEECTTSBE
T ss_pred HHHcCeEEEEcCCCeE
Confidence 3334679999988764
Done!