RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16098
(99 letters)
>gnl|CDD|153373 cd07361, MEMO_like, Memo (mediator of ErbB2-driven cell motility)
is co-precipitated with the C terminus of ErbB2, a
protein involved in cell motility. This subfamily is
composed of Memo (mediator of ErbB2-driven cell
motility) and similar proteins. Memo is a protein that
is co-precipitated with the C terminus of ErbB2, a
protein involved in cell motility. It is required for
the ErbB2-driven cell mobility and is found in protein
complexes with cofilin, ErbB2 and PLCgamma1. However,
Memo is not homologous to any known signaling proteins,
and its function in ErbB2 signaling is not known.
Structural studies show that Memo binds directly to a
specific ErbB2-derived phosphopeptide. Memo is
homologous to class III nonheme iron-dependent extradiol
dioxygenases, however, no metal binding or enzymatic
activity can be detected for Memo. This subfamily also
contains a few members containing a C-terminal
AMMECR1-like domain. The AMMECR1 protein was proposed to
be a regulatory factor that is potentially involved in
the development of AMME contiguous gene deletion
syndrome.
Length = 266
Score = 29.5 bits (67), Expect = 0.19
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 27 VTMKKVKVHRYVSGKRPDYAQGSSDSEDDDDEVV 60
V ++ K + + DYA S D D D VV
Sbjct: 227 VLLEAAKELGALKAELLDYAT-SGDVSGDRDSVV 259
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 27.1 bits (61), Expect = 1.5
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 22 NEKGEVTMKKV--KVHRYVSGK---RPDYAQGSSDSEDDDDEVVNR 62
E V ++ ++ + + GK +PD AQG +E +
Sbjct: 846 GEDVGVNAGEIVRELAKVLGGKGGGKPDLAQGGGPDPKKKEEALEA 891
>gnl|CDD|129611 TIGR00520, asnASE_II, L-asparaginase, type II. Two related
families of asparaginase (L-asparagine amidohydrolase,
EC 3.5.1.1) are designated type I and type II according
to the terminology in E. coli, which has both:
L-asparaginase I is a low-affinity enzyme found in the
cytoplasm, while L-asparaginase II is a high-affinity
periplasmic enzyme synthesized with a cleavable signal
sequence. This model describes L-asparaginases related
to type II of E. coli. Both the cytoplasmic and the
cell wall asparaginases of Saccharomyces cerevisiae
belong to this set. Members of this set from
Acinetobacter glutaminasificans and Pseudomonas
fluorescens are described as having both glutaminase
and asparaginase activitities. All members are
homotetrameric [Energy metabolism, Amino acids and
amines].
Length = 349
Score = 26.7 bits (59), Expect = 2.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 3 NYSSGSLGVQSTAGAVPVLNEKGEV 27
Y G LG++ AVP L + +
Sbjct: 48 GYKVGELGIEDLIEAVPSLKDIANI 72
>gnl|CDD|225749 COG3208, GrsT, Predicted thioesterase involved in non-ribosomal
peptide biosynthesis [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 244
Score = 26.1 bits (58), Expect = 2.8
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 35 HRYVSG-KRPDYAQGSSDSEDDDDEVVNRKSEFTSIPHIPFEDPRLRRL 82
++SG + P Y +G DD + + + P EDP L L
Sbjct: 104 ALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLEDPELMAL 152
>gnl|CDD|226076 COG3546, COG3546, Mn-containing catalase [Inorganic ion transport
and metabolism].
Length = 277
Score = 25.8 bits (57), Expect = 4.5
Identities = 12/45 (26%), Positives = 13/45 (28%), Gaps = 8/45 (17%)
Query: 36 RYVSGKRPDYAQGSSDSEDDDDEVVNRKSEFTSIPHIPFEDPRLR 80
RYVSG PD G E V P + L
Sbjct: 229 RYVSGPSPDGDGG--------FEYVKGPPAGGPEPVLKEMPEELH 265
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 25.7 bits (57), Expect = 5.4
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 22 NEKGEVTMKKVK--VHRYVSGK---RPDYAQGSSDSEDDDDEVVNRKSEF 66
EK V ++ + + + G +PD AQG + + DE + + F
Sbjct: 851 GEKAGVDAGELVREIAKELGGGGGGKPDLAQGGGPDDLNVDEALEKIKSF 900
>gnl|CDD|182958 PRK11096, ansB, L-asparaginase II; Provisional.
Length = 347
Score = 25.4 bits (56), Expect = 5.6
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 3 NYSSGSLGVQSTAGAVP----VLNEKGE 26
NY++G +GV++ AVP + N KGE
Sbjct: 45 NYTAGKVGVENLVNAVPQLKDIANVKGE 72
>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed.
Length = 92
Score = 24.7 bits (55), Expect = 5.8
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 17 AVPVLNEKGEVTMKKVKVHRYVSGKRPDY 45
+V LN KG K K GKR D+
Sbjct: 50 SVNTLNVKG-----KTKRFGRRIGKRSDW 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.127 0.350
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,029,017
Number of extensions: 413003
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 23
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.1 bits)