RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16098
         (99 letters)



>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
          ATP-binding/permease protein SAV1866 {Staphylococcus
          aureus [TaxId: 1280]}
          Length = 255

 Score = 24.0 bits (52), Expect = 3.7
 Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 11 VQSTAGAVPVLNEKGEVTMKKVKVHRYVSGKRP 43
          +++  GA P+  ++G + +  V   +Y   + P
Sbjct: 1  IKNGVGAQPIEIKQGRIDIDHVSF-QYNDNEAP 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.127    0.350 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 349,406
Number of extensions: 14360
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 5
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.0 bits)