BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16105
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PEM8|PCFT_MOUSE Proton-coupled folate transporter OS=Mus musculus GN=Slc46a1 PE=1
SV=1
Length = 459
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
+RA +SKL S E G + SA ++A ++ + I+N++Y ATL+FM FLL + +L
Sbjct: 375 IRAKLSKLVSESEQGALFSAVACVNSLAMLMASGIFNSIYPATLNFMKGFPFLLGAGLLF 434
Query: 120 SPALFI 125
PA+ I
Sbjct: 435 IPAILI 440
>sp|Q5EBA8|PCFT_RAT Proton-coupled folate transporter OS=Rattus norvegicus GN=Slc46a1
PE=2 SV=1
Length = 459
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
+RA +SKL S E G + SA ++A ++ + I+N++Y ATL+FM FLL + +L
Sbjct: 375 IRAKLSKLVSESEQGALFSAVACVNSLAMLMASGIFNSLYPATLNFMKGFPFLLGAGLLF 434
Query: 120 SPALFI 125
PA+ I
Sbjct: 435 IPAILI 440
>sp|Q96NT5|PCFT_HUMAN Proton-coupled folate transporter OS=Homo sapiens GN=SLC46A1 PE=1
SV=1
Length = 459
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
+RA +SKL E G + SA ++A + + I+N++Y ATL+FM FLL + +L
Sbjct: 375 IRAKLSKLVRETEQGALFSAVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLL 434
Query: 120 SPALFI 125
PA+ I
Sbjct: 435 IPAVLI 440
>sp|Q7ZWG6|PCFT_DANRE Proton-coupled folate transporter OS=Danio rerio GN=slc46a1 PE=2
SV=1
Length = 481
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 56 ASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLM 114
AS +R+ +SKL E G + ++ E + ++ + ++NA+Y ATL FM F+
Sbjct: 390 ASTPVLRSKLSKLVDPAEQGALFASVACVEGLCSLVSSGVFNALYPATLHFMKGFPFVFG 449
Query: 115 SLVLTSPALFI 125
+ +L PA I
Sbjct: 450 AAILLIPAGII 460
>sp|Q05B81|PCFT_BOVIN Proton-coupled folate transporter OS=Bos taurus GN=SLC46A1 PE=2
SV=1
Length = 459
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
+RA +S+L E G + SA +A ++ + I+N++Y ATL+ M FLL + +L
Sbjct: 375 IRAKLSRLVRQSEQGALFSALACVNGLAMLMASGIFNSLYPATLNLMKGFPFLLAAGLLF 434
Query: 120 SPALFI 125
PA+ +
Sbjct: 435 IPAILM 440
>sp|Q7Z3Q1|S46A3_HUMAN Solute carrier family 46 member 3 OS=Homo sapiens GN=SLC46A3 PE=2
SV=1
Length = 461
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 45 FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL 104
FL V LF+ F +R+++SK+ + E G + + E + + +N +Y+AT+
Sbjct: 352 FLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYSATV 411
Query: 105 DFMPS-TFLLMSLVLTSPAL 123
+ P TFLL + +L PA+
Sbjct: 412 AWYPGFTFLLSAGLLLLPAI 431
>sp|Q5RBM3|S46A3_PONAB Solute carrier family 46 member 3 OS=Pongo abelii GN=SLC46A3 PE=2
SV=1
Length = 463
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 45 FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL 104
FL V LF+ F +R+++SK+ + E G + + E + + +N +Y+AT+
Sbjct: 352 FLARVPFLFTIVPFSVLRSMLSKVVRSTEQGILFACIAFLETLGGVTAVSTFNGIYSATV 411
Query: 105 DFMPS-TFLLMSLVLTSPAL 123
+ P TFLL + +L PA+
Sbjct: 412 AWYPGFTFLLSAGLLLLPAI 431
>sp|Q5BK75|S46A3_RAT Solute carrier family 46 member 3 OS=Rattus norvegicus GN=Slc46a3
PE=2 SV=1
Length = 461
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
+R+++SK+ + E G + + E + + YN +Y+AT+ + P FLL + +L
Sbjct: 368 LRSMLSKVVHSTEQGVLFACIAFLETLGGVTSTSAYNGIYSATVAWYPGFVFLLSAGLLV 427
Query: 120 SPAL 123
PA+
Sbjct: 428 LPAV 431
>sp|Q9DC26|S46A3_MOUSE Solute carrier family 46 member 3 OS=Mus musculus GN=Slc46a3 PE=2
SV=1
Length = 460
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
+R+++SK+ + E G + + E +A + Y+ +Y+AT+ + P FLL + +L
Sbjct: 368 LRSMLSKVVHSTEQGALFACIAFLETLAGVTSTSAYSGIYSATVAWYPGFIFLLSAGLLV 427
Query: 120 SPALFIFLC 128
PA I LC
Sbjct: 428 LPA--ISLC 434
>sp|Q6DCX5|PCFT_XENLA Proton-coupled folate transporter OS=Xenopus laevis GN=slc46a1 PE=2
SV=1
Length = 463
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 45 FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL 104
F G F+ A+ +R+ +SK+ E G + S+ E ++ ++ ++N++Y ATL
Sbjct: 363 FTGYGLRFFAMATTPVIRSKLSKMVEEGEQGALFSSVACVEGLSFLLATGLFNSLYPATL 422
Query: 105 DFM 107
FM
Sbjct: 423 HFM 425
>sp|A5D7V7|S46A3_BOVIN Solute carrier family 46 member 3 OS=Bos taurus GN=SLC46A3 PE=2
SV=1
Length = 461
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 52 LFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-T 110
LF+ +R++ISK+ + E G + + E + + +N +Y+AT+ +
Sbjct: 359 LFTVMPLSVLRSMISKVVHSTEQGTMFACLAFLETLGGITAVSTFNGIYSATVAWCKGFV 418
Query: 111 FLLMSLVLTSPALFIFLC 128
FLL +++L PA I LC
Sbjct: 419 FLLSAVLLLIPA--ISLC 434
>sp|Q5F4B8|S46A3_CHICK Solute carrier family 46 member 3 OS=Gallus gallus GN=SLC46A3 PE=2
SV=1
Length = 464
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 45 FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL 104
FL V SLFS +R+++SK+ E G V + E + I ++N +Y AT+
Sbjct: 354 FLVRVPSLFSIMPIPVLRSMLSKVVLPSEQGAVFACIACLEVLTGTISLSVFNVIYAATV 413
>sp|Q9BY10|TSCOT_HUMAN Thymic stromal cotransporter homolog OS=Homo sapiens GN=SLC46A2
PE=2 SV=1
Length = 475
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 52 LFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLD-FMPST 110
LF+ +R+ +SKL GKV L A+ ++ + +YN +Y T+D F+ S
Sbjct: 382 LFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSC 441
Query: 111 FLLMS 115
F L S
Sbjct: 442 FALSS 446
>sp|Q8CA03|TSCOT_MOUSE Thymic stromal cotransporter protein OS=Mus musculus GN=Slc46a2
PE=1 SV=2
Length = 479
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 52 LFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLD-FMPST 110
LF+ +R+ +SKL GK+ L + ++ + IYN +Y TLD F+ +
Sbjct: 383 LFALIPITTIRSAMSKLIKDSSYGKIFVILQLCLTLTGVVTSTIYNKIYQLTLDKFIGTC 442
Query: 111 FLLMS 115
F+L S
Sbjct: 443 FVLSS 447
>sp|P96709|YDGK_BACSU Uncharacterized MFS-type transporter YdgK OS=Bacillus subtilis
(strain 168) GN=ydgK PE=3 SV=1
Length = 402
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 32 NYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMI 91
N +T A + F ++A + RAI+ + + EL K S M+ A+APM+
Sbjct: 99 NITTLVAARFLQGFT-------ASAGLVLSRAIVRDVFTGRELSKFFSLLMVITAVAPMV 151
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 41 YFTDFLGAVASL-FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNA- 98
YFTDFL V S+ +N SF+ A ELGK A M+ P + + N
Sbjct: 35 YFTDFLNQVNSVSTTNFSFVFKEC---AKQGALELGKQAHAHMIISGFRPTTF--VLNCL 89
Query: 99 --VYTATLDFMPSTFLLMSLVL 118
VYT + DF+ ++ + + L
Sbjct: 90 LQVYTNSRDFVSASMVFDKMPL 111
>sp|Q9CU24|THMS3_MOUSE Protein THEMIS3 OS=Mus musculus GN=Themis3 PE=2 SV=1
Length = 569
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 15 FTVMYLYTRLAFRWNEYNYST-------------FYTAYYFTDFLGAVASLFSNASFIAM 61
F V Y Y L R Y Y+ F + +T +LG+ AS +N F+A+
Sbjct: 324 FLVPYTYQGLVLRRGRYFYAVSDVAAAMKHGELCFQASQDYTSYLGSFASFRANECFLAL 383
Query: 62 RAIISKLTSAEELGKV 77
+ + EL +V
Sbjct: 384 KKSVVSAEIHGELHRV 399
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,642,566
Number of Sequences: 539616
Number of extensions: 1329222
Number of successful extensions: 3737
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3714
Number of HSP's gapped (non-prelim): 30
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)