Query psy16105
Match_columns 130
No_of_seqs 122 out of 701
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 21:01:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 98.4 1.4E-05 4.7E-10 62.1 14.4 113 13-128 270-432 (451)
2 4aps_A DI-OR tripeptide H+ sym 98.1 7.9E-05 2.7E-09 58.8 14.3 113 12-127 30-194 (491)
3 3o7q_A L-fucose-proton symport 98.1 0.0001 3.4E-09 57.0 13.4 86 17-102 47-179 (438)
4 1pw4_A Glycerol-3-phosphate tr 97.8 0.00039 1.3E-08 53.7 12.4 70 54-125 133-202 (451)
5 2gfp_A EMRD, multidrug resista 97.7 0.0001 3.6E-09 56.1 7.9 99 22-123 26-168 (375)
6 2xut_A Proton/peptide symporte 97.7 0.00049 1.7E-08 54.7 11.5 111 13-126 30-195 (524)
7 3o7q_A L-fucose-proton symport 97.6 0.0016 5.4E-08 50.2 12.4 107 13-123 276-426 (438)
8 2cfq_A Lactose permease; trans 96.9 0.0049 1.7E-07 48.0 8.7 68 56-126 328-396 (417)
9 2gfp_A EMRD, multidrug resista 96.6 0.00034 1.2E-08 53.2 0.2 48 54-102 305-352 (375)
10 2xut_A Proton/peptide symporte 96.4 0.0015 5.2E-08 51.8 3.0 78 50-127 415-500 (524)
11 4aps_A DI-OR tripeptide H+ sym 96.4 0.0035 1.2E-07 49.2 4.9 70 54-127 400-469 (491)
12 4gc0_A D-xylose-proton symport 95.2 0.42 1.4E-05 37.1 12.0 71 56-126 386-459 (491)
13 4gc0_A D-xylose-proton symport 89.0 4.8 0.00016 31.0 10.4 48 54-101 140-187 (491)
14 2cfq_A Lactose permease; trans 88.0 0.031 1.1E-06 43.4 -2.9 100 15-118 27-176 (417)
15 4ev6_A Magnesium transport pro 29.1 1.4E+02 0.0049 22.4 6.2 45 84-128 282-332 (339)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.38 E-value=1.4e-05 Score=62.07 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=84.9
Q ss_pred chhHHHHHhhhhhccccchhHHHHHHHHHHHHH-----------------------------------------------
Q psy16105 13 GEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF----------------------------------------------- 45 (130)
Q Consensus 13 g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~----------------------------------------------- 45 (130)
+.......|.++.+++++.+.|...+..++..+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 445566677788899999998888776654333
Q ss_pred --HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHH-hHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105 46 --LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAI-APMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA 122 (130)
Q Consensus 46 --~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl-~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~ 122 (130)
.....+...+...|...+++++.+|++++|+.+|.......+ +..++|.+...+++.. -....|++.+++.+++
T Consensus 350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~ 426 (451)
T 1pw4_A 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILA 426 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHH
Confidence 111222234566788889999999999999999999999999 9999999999998862 3556788877777766
Q ss_pred HHHHHh
Q psy16105 123 LFIFLC 128 (130)
Q Consensus 123 ~~l~~~ 128 (130)
.++..+
T Consensus 427 ~~~~~~ 432 (451)
T 1pw4_A 427 VILLIV 432 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.15 E-value=7.9e-05 Score=58.78 Aligned_cols=113 Identities=10% Similarity=0.065 Sum_probs=84.7
Q ss_pred cchhHHHHHhhhhh-----ccccchhHHHHHHHHHHHHH-----------------------------------------
Q psy16105 12 QGEFTVMYLYTRLA-----FRWNEYNYSTFYTAYYFTDF----------------------------------------- 45 (130)
Q Consensus 12 ~g~~~i~~ly~~~~-----f~W~~~~~g~~~~~~~~~~~----------------------------------------- 45 (130)
.+....+..|.+++ +++++.+.|...+...+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 109 (491)
T 4aps_A 30 YGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS 109 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTT
T ss_pred HHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34456777888888 99999999999877654443
Q ss_pred ----HHHHHHHHHhhHHHHHHHHHhcCCCccc--hHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHH
Q psy16105 46 ----LGAVASLFSNASFIAMRAIISKLTSAEE--LGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLT 119 (130)
Q Consensus 46 ----~~~~~~~~~~~~~p~~rs~iSk~v~~~e--qG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~ 119 (130)
.-.+.+...+...|+..+++++..|++| +|+.++..+...+++..++|++...+.+. .-...+|++.+...
T Consensus 110 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~ 186 (491)
T 4aps_A 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGM 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Confidence 1123344567789999999999999999 88899999999999999999999988764 11245666766666
Q ss_pred HHHHHHHH
Q psy16105 120 SPALFIFL 127 (130)
Q Consensus 120 ~~~~~l~~ 127 (130)
++++++..
T Consensus 187 ~~~~~~~~ 194 (491)
T 4aps_A 187 FIGLLVYY 194 (491)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.08 E-value=0.0001 Score=57.03 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=69.2
Q ss_pred HHHHhhhhhccccchhHHHHHHHHHHHHH-----------------------------------------------HHHH
Q psy16105 17 VMYLYTRLAFRWNEYNYSTFYTAYYFTDF-----------------------------------------------LGAV 49 (130)
Q Consensus 17 i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-----------------------------------------------~~~~ 49 (130)
...-+.++.+++++.+.|+..+...+... .-.+
T Consensus 47 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 126 (438)
T 3o7q_A 47 ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFI 126 (438)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 33445677899999999999888765544 1122
Q ss_pred HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105 50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA 102 (130)
Q Consensus 50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~ 102 (130)
.+...+...|+..+++++..|++|+|+..+..+...+++.+++|++...+...
T Consensus 127 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 127 IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33345778899999999999999999999999999999999999999988733
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.81 E-value=0.00039 Score=53.75 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=53.9
Q ss_pred HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105 54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI 125 (130)
Q Consensus 54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l 125 (130)
.+...|+..+++++..|++|||+.+|..+...+++.+++|++...+.+.. +.|. .+|++.+.+.++..++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~-~~f~~~~~~~~~~~~~ 202 (451)
T 1pw4_A 133 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWH-AALYMPAFCAILVALF 202 (451)
T ss_dssp HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCST-TCTHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHH-HHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999998877542 1132 3456655555444333
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.73 E-value=0.0001 Score=56.08 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=74.0
Q ss_pred hhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhhH
Q psy16105 22 TRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNAS 57 (130)
Q Consensus 22 ~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~ 57 (130)
.++++++++.+.|+..+...+... .....+...+..
T Consensus 26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~ 105 (375)
T 2gfp_A 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVG 105 (375)
T ss_dssp HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 366899999999999888765554 112233445678
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105 58 FIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL 123 (130)
Q Consensus 58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~ 123 (130)
.|..++.+++..|++|+|+.++..+...+++..++|++...+.+.. .| ..+|++.+.+.++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~-~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 106 GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW--NW-RACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH--HH-HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc--cH-HHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999988775431 12 345666555554443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.70 E-value=0.00049 Score=54.75 Aligned_cols=111 Identities=10% Similarity=0.031 Sum_probs=79.0
Q ss_pred chhHHHHHhhhhhcc------ccchhHHHHHHHHHHHHH-----------------------------------------
Q psy16105 13 GEFTVMYLYTRLAFR------WNEYNYSTFYTAYYFTDF----------------------------------------- 45 (130)
Q Consensus 13 g~~~i~~ly~~~~f~------W~~~~~g~~~~~~~~~~~----------------------------------------- 45 (130)
+.......|.++.++ +++.+.|...+...+...
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 109 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV 109 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH
Confidence 345666778888889 999999998877654443
Q ss_pred -----HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHH---HHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHH
Q psy16105 46 -----LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSA---FMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLV 117 (130)
Q Consensus 46 -----~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~---~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~ 117 (130)
.-.+.+...+...|+..+++++.+|++|+|+..+. .....+++..++|++...+.+. .-...+|++.+.
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~ 186 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGV 186 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHH
Confidence 01122333466789999999999999999876555 8888899999999988887753 112356777666
Q ss_pred HHHHHHHHH
Q psy16105 118 LTSPALFIF 126 (130)
Q Consensus 118 l~~~~~~l~ 126 (130)
+.+.+.++.
T Consensus 187 ~~~~~~~~~ 195 (524)
T 2xut_A 187 LMFVATVFF 195 (524)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555444
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.56 E-value=0.0016 Score=50.22 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=75.7
Q ss_pred chhHHHHHh-hhhhccccchhHHHHHHHHHHHHH-------------------------------------------HHH
Q psy16105 13 GEFTVMYLY-TRLAFRWNEYNYSTFYTAYYFTDF-------------------------------------------LGA 48 (130)
Q Consensus 13 g~~~i~~ly-~~~~f~W~~~~~g~~~~~~~~~~~-------------------------------------------~~~ 48 (130)
+.......| .++++++++.+.|...+...+..+ ...
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALT 355 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 344566677 888999999999999887655443 123
Q ss_pred HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105 49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL 123 (130)
Q Consensus 49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~ 123 (130)
..+.+.+...|...+...+..|++ +++..+... ...++..++|++...+++.+-+ ....|++.+.+.+..+
T Consensus 356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGN--IPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTS--SGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHH
Confidence 344455778899999999999866 888887766 7779999999999999887421 2344555444444333
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.88 E-value=0.0049 Score=48.02 Aligned_cols=68 Identities=9% Similarity=0.035 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHH-HHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105 56 ASFIAMRAIISKLTSAEELGKVMSAF-MLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF 126 (130)
Q Consensus 56 ~~~p~~rs~iSk~v~~~eqG~~~~~~-~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~ 126 (130)
...+...+..++..|++++|+.++.. +....++..++|.+...+++.. -+...|.+.+++.+++.++.
T Consensus 328 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---g~~~~f~~~~~~~l~~~~~~ 396 (417)
T 2cfq_A 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLIS 396 (417)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---CcHHHHHHHHHHHHHHHHHH
Confidence 34456678999999999999999994 8888999999999999888742 13456777777776666554
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.62 E-value=0.00034 Score=53.18 Aligned_cols=48 Identities=6% Similarity=-0.086 Sum_probs=41.8
Q ss_pred HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105 54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA 102 (130)
Q Consensus 54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~ 102 (130)
.+...|...+.+.+.+| |++|+.+|..+....++..++|.+...+++.
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35567788888899887 8999999999999999999999999888764
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.45 E-value=0.0015 Score=51.85 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=59.2
Q ss_pred HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccC-------C-chHHHHHHHHHHH
Q psy16105 50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFM-------P-STFLLMSLVLTSP 121 (130)
Q Consensus 50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~-------p-g~~f~~~a~l~~~ 121 (130)
.+...+...|...+.+++.+|++++|+.+|.......++..++|.+...+++.+-..| + ...|++.+++.++
T Consensus 415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
T 2xut_A 415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAIL 494 (524)
T ss_dssp HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHH
Confidence 3444567889999999999999999999999999999999999999998876421101 1 2337777777666
Q ss_pred HHHHHH
Q psy16105 122 ALFIFL 127 (130)
Q Consensus 122 ~~~l~~ 127 (130)
+.++..
T Consensus 495 ~~~~~~ 500 (524)
T 2xut_A 495 AAIVFA 500 (524)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 665544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.43 E-value=0.0035 Score=49.24 Aligned_cols=70 Identities=7% Similarity=0.020 Sum_probs=53.8
Q ss_pred HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105 54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL 127 (130)
Q Consensus 54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~ 127 (130)
.+...|...+.+++.+|++++|+..|.......++..++|.+...+.+. .....|.+.+++.+.+.++..
T Consensus 400 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 400 EMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999999999999999999999887766543 344566666666655554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=95.15 E-value=0.42 Score=37.13 Aligned_cols=71 Identities=8% Similarity=0.009 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc---cccCCchHHHHHHHHHHHHHHHH
Q psy16105 56 ASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT---LDFMPSTFLLMSLVLTSPALFIF 126 (130)
Q Consensus 56 ~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t---~~~~pg~~f~~~a~l~~~~~~l~ 126 (130)
...|......+...|.+.||+..|.......+++++++.++..+.+.. .....+.+|++.+++.+++.+..
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 345778889999999999999999999999999999888877664432 12456778888777776665543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=89.03 E-value=4.8 Score=31.00 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=41.1
Q ss_pred HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105 54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT 101 (130)
Q Consensus 54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~ 101 (130)
.+...|.....++...|+++||+..+..+....++.++++.+......
T Consensus 140 ~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 140 VGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 466789999999999999999999999999999998888777665543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=87.96 E-value=0.031 Score=43.38 Aligned_cols=100 Identities=7% Similarity=0.042 Sum_probs=59.1
Q ss_pred hHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------HH---------HHHH--------------
Q psy16105 15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------LG---------AVAS-------------- 51 (130)
Q Consensus 15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------~~---------~~~~-------------- 51 (130)
...+..|.++++++++.+.|...+...+... .+ ....
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999888765544 00 0000
Q ss_pred -HH----HhhHHHHHHHHHhcCCCc--cchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHH
Q psy16105 52 -LF----SNASFIAMRAIISKLTSA--EELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVL 118 (130)
Q Consensus 52 -~~----~~~~~p~~rs~iSk~v~~--~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l 118 (130)
.. .+...++..+.....+++ +++|+.+|......+++..++|++...+.+.. ...+|++.+..
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~----~~~~f~~~~~~ 176 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN----NQFVFWLGSGC 176 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHC----SHHHHTTTTTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc----hhHHHHHHHHH
Confidence 00 011122222333333332 45566677776677788889999888887542 34566665544
No 15
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=29.09 E-value=1.4e+02 Score=22.36 Aligned_cols=45 Identities=11% Similarity=0.356 Sum_probs=25.2
Q ss_pred HHHHhHhhHHH-HHHHHHHhccccCCc-----hHHHHHHHHHHHHHHHHHh
Q psy16105 84 FEAIAPMIYNP-IYNAVYTATLDFMPS-----TFLLMSLVLTSPALFIFLC 128 (130)
Q Consensus 84 ~~sl~~~i~~~-l~~~iy~~t~~~~pg-----~~f~~~a~l~~~~~~l~~~ 128 (130)
+..++.++.|| +.+.+|.-..+..|+ ..+++.+.+.+.++++++|
T Consensus 282 LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~ 332 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYI 332 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHH
Confidence 33345555555 557788876554443 4555555555555555553
Done!