RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16105
         (130 letters)



>gnl|CDD|217552 pfam03429, MSP1b, Major surface protein 1B.  The major surface
           protein (MSP1) of the cattle pathogen Anaplasma is a
           heterodimer comprised of MSP1a and MSP1b. This family is
           the MSP1b chain. There MSP1 proteins are putative
           adhesins for bovine erythrocytes.
          Length = 726

 Score = 28.5 bits (63), Expect = 1.1
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 45  FLGAVASLFSNASFI--AMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNP---IYNAV 99
           F+GAVA L    S    A  A I  + +A     ++   M  +++   +      +++ V
Sbjct: 308 FMGAVAKLAGAVSMCVAAYTAAIVGMAAATPAT-LLLTAMDNQSVNNAVVKVSEYLHSNV 366

Query: 100 YTATLDFMPSTFLLMSL 116
             AT D M S F +M+ 
Sbjct: 367 EQATKDLMASEFAMMTF 383


>gnl|CDD|240508 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4.  Spt5, an
          eukaryotic ortholog of NusG, contains multiple KOW
          motifs at its C-terminus. Spt5 is involved in
          transcription elongation and termination. KOW domain is
          known as an RNA-binding motif that is shared so far
          among some families of ribosomal proteins, the
          essential bacterial transcriptional elongation factor
          NusG, the eukaryotic chromatin elongation factor Spt5,
          the higher eukaryotic KIN17 proteins and Mtr4. KOW_Spt5
          domains play critical roles in recruitment of multiple
          other eukaryotic transcription elongation and RNA
          biogenesis factors and additionally are involved in the
          binding of the eukaryotic Spt5 proteins to RNA
          polymerases.
          Length = 43

 Score = 25.9 bits (58), Expect = 1.5
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 3  IVVVLNGPYQG-EFTVMYLYTRLAF 26
           V V++GPY+G + TV+++Y    F
Sbjct: 3  TVKVVDGPYKGRQGTVLHIYRGTLF 27


>gnl|CDD|239169 cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG2: The
           NuoG/Nad11/75-kDa subunit (second domain) of the
           NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory
           complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is
           the first energy-transducting complex in the respiratory
           chains of many prokaryotes and eukaryotes. Mitochondrial
           complex I and its bacterial counterpart, NDH-1, function
           as a redox pump that uses the redox energy to
           translocate H+ ions across the membrane, resulting in a
           significant contribution to energy production. The
           atomic structure of complex I is not known and the
           mechanisms of electron transfer and proton pumping are
           not established. The nad11 gene codes for the largest
           (75-kDa) subunit of the mitochondrial NADH:ubiquinone
           oxidoreductase, it constitutes the electron input part
           of the enzyme, or the so-called NADH dehydrogenase
           fragment. In Escherichia coli, this subunit is encoded
           by the nuoG gene, and is part of the 14 distinct
           subunits constituting the 'minimal' functional enzyme.
           The nad11 gene is nuclear-encoded in animals, plants,
           and fungi, but is still encoded in the mitochondrial
           genome of some protists. The Nad11/NuoG subunit is made
           of two domains: the first contains three binding sites
           for FeS clusters (the fer2 domain), the second domain
           (this CD), is of unknown function or, as postulated, has
           lost an ancestral formate dehydrogenase activity that
           became redundant during the evolution of the complex I
           enzyme. Although only vestigial sequence evidence
           remains of a molybdopterin binding site, this protein
           domain family belongs to the molybdopterin_binding
           (MopB) superfamily of proteins. Bacterial type II
           NADH-quinone oxidoreductases and NQR-type sodium-motive
           NADH-quinone oxidoreductases are not homologs of this
           domain family.
          Length = 386

 Score = 26.9 bits (60), Expect = 3.3
 Identities = 6/29 (20%), Positives = 7/29 (24%)

Query: 46  LGAVASLFSNASFIAMRAIISKLTSAEEL 74
           L  VA          +  I       E L
Sbjct: 75  LKTVAEGLKAVKGDKIGGIAGPRADLESL 103


>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
           an aminohydrolase responsible for the conversion of
           guanine to xanthine and ammonia, the first step to
           utilize guanine as a nitrogen source. This reaction also
           removes the guanine base from the pool and therefore can
           play a role in the regulation of cellular GTP and the
           guanylate nucleotide pool.
          Length = 429

 Score = 26.5 bits (59), Expect = 4.6
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 9/41 (21%)

Query: 39  AYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMS 79
            Y+ T    +  +LF  A+    RAI          GKV  
Sbjct: 129 CYFATIHPESTEALFEEAAKRGQRAIA---------GKVCM 160


>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein;
           Provisional.
          Length = 441

 Score = 26.2 bits (58), Expect = 5.1
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 47  GAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMI 91
           G VA LFS    +A   II+ LTS  ++ ++   +++++ I P++
Sbjct: 319 GIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLV 363


>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
           acyltransferase; Validated.
          Length = 1146

 Score = 26.4 bits (59), Expect = 5.2
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 31  YNYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPM 90
           Y    F+ A+  T  LGA ++++S A +     II +L   E L +       F  +A +
Sbjct: 98  YYLGWFWLAFAVTFLLGAQSAIYSPAKY----GIIPELVGKENLSRANGLLEAFTIVAIL 153

Query: 91  IYNPIYNAVYTATLDFMPSTFL 112
               +++ ++ +     PS  L
Sbjct: 154 AGTALFSFLFESVNGNTPSEIL 175


>gnl|CDD|218382 pfam05013, FGase, N-formylglutamate amidohydrolase.
           Formylglutamate amidohydrolase (FGase) catalyzes the
           terminal reaction in the five-step pathway for histidine
           utilisation in Pseudomonas putida. By this action,
           N-formyl-L-glutamate (FG) is hydrolysed to produce
           L-glutamate plus formate.
          Length = 221

 Score = 25.6 bits (57), Expect = 8.3
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 4   VVVLNGPYQGEFTVMYLY 21
            V  N PY+G +   +  
Sbjct: 184 RVGRNEPYKGGYITRHYG 201


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,764,296
Number of extensions: 605233
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 928
Number of HSP's successfully gapped: 67
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.3 bits)