RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16105
         (130 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.4 bits (78), Expect = 0.007
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 17/111 (15%)

Query: 32  NYSTFYTAYYF-----TDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEA 86
            Y   +  ++       + +     +F +  F+  + I    T+    G +++     + 
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNASGSILNTLQQLKF 529

Query: 87  IAPMIY--NPIYNAVYTATLDFMP--------STFL-LMSLVLTSPALFIF 126
             P I   +P Y  +  A LDF+P        S +  L+ + L +    IF
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.8 bits (58), Expect = 1.9
 Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 31/54 (57%)

Query: 72  EELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI 125
           + L K+ ++  L+   A                D             ++PAL I
Sbjct: 20  QALKKLQASLKLY---AD---------------D-------------SAPALAI 42


>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
           transporter; 3.50A {Escherichia coli}
          Length = 375

 Score = 26.4 bits (59), Expect = 2.8
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 62  RAIISKLTSAEELGKVMSAFMLFEAIAPMI 91
           R +   L    +L    S   +   ++P++
Sbjct: 110 RTLPRDLYERTQLRHANSLLNMGILVSPLL 139


>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium
          dependent kinase, structural genomics, structural GE
          consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
          Length = 191

 Score = 26.1 bits (58), Expect = 2.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 60 AMRAIISKLTSAEELGKVMSAFMLF 84
          AM  + SKLT+ EE  ++   F   
Sbjct: 25 AMLFMGSKLTTLEETKELTQIFRQL 49


>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
           nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
           {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
           1m7h_A* 3cr7_A*
          Length = 211

 Score = 26.1 bits (58), Expect = 3.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 47  GAVASLFSNASFIAMRAIIS 66
             VA LF++++ IA+ + IS
Sbjct: 88  AEVAKLFADSNSIAITSFIS 107


>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
           transferase-transferase complex; HET: ADX ANP; 1.79A
           {Arabidopsis thaliana} PDB: 4fxp_A*
          Length = 200

 Score = 26.0 bits (58), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 47  GAVASLFSNASFIAMRAIIS 66
           G VA LF++A  I + ++IS
Sbjct: 87  GEVAKLFADAGIICIASLIS 106


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 4.5
 Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 41/134 (30%)

Query: 12   QGEFTV---MYLYTR-LAFR--WNEYNYSTFYTA-YYFTDFLGAVASLFSNASFIAMRAI 64
            QG       M LY    A +  WN         A  +F D  G     FS      +  I
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNR--------ADNHFKDTYG-----FS------ILDI 1664

Query: 65   I----SKLT------SAEELGKVMSAFMLFEAI--APMIYNPIYNAV--YTATLDFMPST 110
            +      LT        + + +  SA M+FE I    +    I+  +  ++ +  F    
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSA-MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723

Query: 111  FLLMSLVLTSPALF 124
             LL +   T PAL 
Sbjct: 1724 GLLSATQFTQPALT 1737


>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural
          genomics, NPPSFA, national P protein structural and
          functional analyses; 2.10A {Aeropyrum pernix}
          Length = 186

 Score = 25.2 bits (56), Expect = 5.6
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 47 GAVASLFSNASFIAMRAIIS 66
            +A L +    I + + +S
Sbjct: 75 AWIARLLARNGVIVICSFVS 94


>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
          (PAPS synthetase...; NMP-kinase fold, protein in
          complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo
          sapiens} PDB: 2pey_A* 2ax4_A*
          Length = 179

 Score = 25.2 bits (56), Expect = 5.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 47 GAVASLFSNASFIAMRAIIS 66
            VA LF++A  + + + IS
Sbjct: 67 AEVAKLFADAGLVCITSFIS 86


>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis
           platani}
          Length = 129

 Score = 24.7 bits (53), Expect = 7.3
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 28  WNEYNYSTFYTAYYF-TDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSA 80
           W+  +  T +       + +           F       +KL  + E G+V + 
Sbjct: 61  WDSPSCGTCWKVTIPNGNSIFIRGVDSGRGGFNVNPTAFTKLVGSTEAGRVDNV 114


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0777    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,990,581
Number of extensions: 105285
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 26
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (23.7 bits)