Query psy16107
Match_columns 256
No_of_seqs 146 out of 393
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 21:03:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3119|consensus 99.8 9.5E-18 2.1E-22 152.7 16.1 72 162-233 183-254 (269)
2 PF07716 bZIP_2: Basic region 99.5 3.3E-13 7.1E-18 96.0 8.8 54 170-223 1-54 (54)
3 smart00338 BRLZ basic region l 99.4 2.7E-12 5.9E-17 93.6 9.5 63 170-232 2-64 (65)
4 PF00170 bZIP_1: bZIP transcri 99.0 1.9E-09 4E-14 78.6 9.2 60 172-231 4-63 (64)
5 KOG4571|consensus 98.9 5.1E-09 1.1E-13 97.6 9.5 70 165-234 219-288 (294)
6 KOG0837|consensus 98.0 2.2E-05 4.7E-10 73.0 8.1 61 174-234 207-267 (279)
7 KOG4005|consensus 97.8 0.00015 3.3E-09 67.2 9.7 53 171-223 67-119 (292)
8 KOG3584|consensus 97.7 8.1E-05 1.8E-09 70.4 6.5 48 179-233 297-344 (348)
9 PF03131 bZIP_Maf: bZIP Maf tr 97.1 6.1E-06 1.3E-10 64.4 -6.9 56 173-228 30-85 (92)
10 KOG3863|consensus 97.0 0.0016 3.4E-08 66.5 6.9 68 176-250 493-560 (604)
11 KOG4343|consensus 96.9 0.0066 1.4E-07 61.7 10.4 52 177-228 285-336 (655)
12 KOG0709|consensus 96.5 0.004 8.6E-08 61.9 5.5 60 174-233 252-311 (472)
13 KOG1414|consensus 95.8 0.00057 1.2E-08 65.8 -4.2 76 163-238 144-223 (395)
14 KOG4196|consensus 94.5 0.37 8E-06 41.3 9.3 55 179-233 59-113 (135)
15 PF08172 CASP_C: CASP C termin 90.5 0.94 2E-05 41.8 7.0 44 185-228 84-127 (248)
16 PF07334 IFP_35_N: Interferon- 90.3 0.72 1.6E-05 36.0 5.2 30 203-232 2-31 (76)
17 TIGR02894 DNA_bind_RsfA transc 90.2 2.3 5E-05 37.5 8.8 29 201-229 104-132 (161)
18 PF04977 DivIC: Septum formati 88.7 1.8 3.9E-05 31.5 6.1 44 193-236 23-67 (80)
19 PF02183 HALZ: Homeobox associ 88.7 1.7 3.8E-05 30.5 5.6 33 199-231 10-42 (45)
20 PF06005 DUF904: Protein of un 88.4 2.8 6E-05 32.1 7.1 39 192-230 16-54 (72)
21 TIGR02449 conserved hypothetic 88.1 1.9 4.2E-05 32.7 6.0 40 194-233 7-46 (65)
22 PRK00888 ftsB cell division pr 88.0 1.2 2.7E-05 35.9 5.2 39 194-232 34-72 (105)
23 PF14197 Cep57_CLD_2: Centroso 87.2 5.2 0.00011 30.4 7.9 51 177-228 10-67 (69)
24 PF07558 Shugoshin_N: Shugoshi 86.9 0.74 1.6E-05 32.4 2.9 44 175-218 2-45 (46)
25 PRK09413 IS2 repressor TnpA; R 86.5 1.6 3.4E-05 35.3 5.1 29 203-231 73-101 (121)
26 PRK13922 rod shape-determining 86.2 1.8 3.9E-05 39.2 5.8 36 197-232 72-110 (276)
27 PF00170 bZIP_1: bZIP transcri 85.9 7.3 0.00016 28.1 7.9 35 199-233 24-58 (64)
28 PF07989 Microtub_assoc: Micro 85.8 1.9 4.2E-05 33.1 5.0 32 202-233 37-68 (75)
29 PRK00888 ftsB cell division pr 85.7 3.5 7.7E-05 33.3 6.7 35 195-229 28-62 (105)
30 PF12709 Kinetocho_Slk19: Cent 85.6 9 0.0002 30.7 8.8 58 174-231 28-86 (87)
31 KOG1414|consensus 85.0 0.2 4.2E-06 48.6 -1.0 62 172-233 284-346 (395)
32 KOG1318|consensus 84.9 2.9 6.2E-05 41.6 6.9 55 196-250 292-348 (411)
33 COG2433 Uncharacterized conser 84.7 2.5 5.4E-05 44.1 6.6 39 195-233 423-461 (652)
34 PF08826 DMPK_coil: DMPK coile 84.3 5.5 0.00012 29.8 6.7 39 191-229 22-60 (61)
35 KOG1318|consensus 84.0 9 0.0002 38.2 9.9 74 165-238 221-327 (411)
36 TIGR02209 ftsL_broad cell divi 83.6 4.1 8.9E-05 30.4 5.9 46 194-240 31-77 (85)
37 PF12808 Mto2_bdg: Micro-tubul 82.6 2.1 4.5E-05 31.3 3.7 33 189-221 17-49 (52)
38 PF04977 DivIC: Septum formati 82.5 4.2 9E-05 29.5 5.4 31 197-227 20-50 (80)
39 PF06005 DUF904: Protein of un 82.2 7.6 0.00017 29.7 6.9 35 194-228 25-59 (72)
40 TIGR02894 DNA_bind_RsfA transc 82.2 8 0.00017 34.1 7.9 42 193-234 110-151 (161)
41 PF07047 OPA3: Optic atrophy 3 81.8 3.8 8.2E-05 34.2 5.5 35 187-221 98-132 (134)
42 PRK10884 SH3 domain-containing 80.9 5.6 0.00012 35.8 6.6 34 200-233 131-164 (206)
43 PF05529 Bap31: B-cell recepto 80.5 12 0.00026 32.2 8.4 34 199-232 152-185 (192)
44 smart00338 BRLZ basic region l 79.9 16 0.00035 26.4 7.7 35 199-233 24-58 (65)
45 PRK13729 conjugal transfer pil 79.8 8.4 0.00018 39.1 8.1 41 195-235 77-124 (475)
46 PRK13922 rod shape-determining 79.8 7.9 0.00017 35.0 7.3 34 200-233 68-101 (276)
47 PF15058 Speriolin_N: Sperioli 79.0 4.3 9.3E-05 36.9 5.3 34 200-234 11-44 (200)
48 KOG4196|consensus 78.6 6.5 0.00014 33.8 6.0 30 204-233 77-106 (135)
49 PF07716 bZIP_2: Basic region 78.3 18 0.00039 25.5 7.3 31 199-229 23-53 (54)
50 PF01166 TSC22: TSC-22/dip/bun 78.1 3.9 8.4E-05 30.8 4.0 32 201-232 14-45 (59)
51 PF07407 Seadorna_VP6: Seadorn 77.5 3.8 8.3E-05 40.3 4.8 23 206-228 37-59 (420)
52 PF04728 LPP: Lipoprotein leuc 76.4 6.9 0.00015 29.0 4.8 33 201-233 3-35 (56)
53 PRK05431 seryl-tRNA synthetase 76.1 9.7 0.00021 37.3 7.2 39 204-245 69-111 (425)
54 PF06810 Phage_GP20: Phage min 75.1 24 0.00052 30.3 8.6 39 187-225 27-68 (155)
55 PF08317 Spc7: Spc7 kinetochor 74.7 19 0.00041 33.9 8.5 55 179-233 214-269 (325)
56 PF08172 CASP_C: CASP C termin 74.6 6.8 0.00015 36.2 5.5 12 65-76 23-34 (248)
57 PLN02678 seryl-tRNA synthetase 74.1 16 0.00034 36.6 8.2 39 204-245 74-116 (448)
58 KOG4343|consensus 74.1 3.1 6.8E-05 43.0 3.4 37 192-228 307-343 (655)
59 PRK10803 tol-pal system protei 74.0 8.8 0.00019 35.3 6.0 36 194-229 54-89 (263)
60 PF04201 TPD52: Tumour protein 74.0 6.4 0.00014 34.7 4.9 49 199-250 34-83 (162)
61 smart00787 Spc7 Spc7 kinetocho 73.8 20 0.00042 34.2 8.4 73 177-252 207-280 (312)
62 TIGR00219 mreC rod shape-deter 73.5 8.3 0.00018 35.9 5.8 13 220-232 96-108 (283)
63 PF10186 Atg14: UV radiation r 73.5 25 0.00054 31.2 8.6 38 193-230 69-106 (302)
64 PLN02320 seryl-tRNA synthetase 73.3 10 0.00022 38.6 6.8 40 203-245 132-175 (502)
65 PRK15422 septal ring assembly 73.1 17 0.00036 28.9 6.5 36 196-231 20-62 (79)
66 PF06156 DUF972: Protein of un 73.1 10 0.00022 31.0 5.5 28 199-226 27-54 (107)
67 PF13851 GAS: Growth-arrest sp 72.8 34 0.00073 30.5 9.2 48 186-233 85-132 (201)
68 PF01166 TSC22: TSC-22/dip/bun 72.7 4.9 0.00011 30.2 3.3 32 185-216 12-43 (59)
69 KOG4010|consensus 72.3 7.6 0.00016 35.4 5.0 25 209-233 45-69 (208)
70 PF05377 FlaC_arch: Flagella a 72.3 16 0.00034 27.1 5.8 32 201-232 14-45 (55)
71 COG1340 Uncharacterized archae 72.2 43 0.00094 32.1 10.3 75 173-247 38-118 (294)
72 KOG3119|consensus 72.0 17 0.00037 33.7 7.4 47 187-233 194-240 (269)
73 smart00340 HALZ homeobox assoc 71.9 7.7 0.00017 27.6 3.9 21 201-221 12-32 (44)
74 PF04111 APG6: Autophagy prote 71.8 20 0.00044 33.9 8.0 40 190-229 53-92 (314)
75 PRK06835 DNA replication prote 70.5 23 0.0005 33.7 8.1 61 173-237 12-91 (329)
76 PF05377 FlaC_arch: Flagella a 70.4 22 0.00047 26.4 6.2 37 196-232 2-38 (55)
77 KOG3335|consensus 70.4 17 0.00036 32.8 6.7 32 189-220 101-132 (181)
78 TIGR00219 mreC rod shape-deter 70.2 13 0.00029 34.5 6.4 28 202-229 67-94 (283)
79 PRK14127 cell division protein 69.6 14 0.00031 30.5 5.7 35 199-233 35-69 (109)
80 PF06305 DUF1049: Protein of u 69.4 6.7 0.00014 28.1 3.4 22 206-227 46-67 (68)
81 COG4026 Uncharacterized protei 68.9 21 0.00045 33.8 7.2 17 217-233 172-188 (290)
82 PRK10884 SH3 domain-containing 68.8 18 0.00038 32.6 6.6 37 192-228 130-166 (206)
83 TIGR03752 conj_TIGR03752 integ 68.5 16 0.00034 37.2 6.8 28 206-233 107-134 (472)
84 PF10186 Atg14: UV radiation r 68.4 53 0.0011 29.1 9.5 41 193-233 62-102 (302)
85 PF12709 Kinetocho_Slk19: Cent 68.3 20 0.00044 28.7 6.1 32 198-229 46-77 (87)
86 KOG2391|consensus 67.4 55 0.0012 32.3 10.0 37 195-231 240-276 (365)
87 PF12999 PRKCSH-like: Glucosid 67.2 30 0.00066 30.8 7.6 19 209-227 154-172 (176)
88 PF15397 DUF4618: Domain of un 67.2 34 0.00074 32.2 8.3 71 173-245 179-249 (258)
89 PRK13169 DNA replication intia 66.9 16 0.00035 30.2 5.5 28 199-226 27-54 (110)
90 PF02403 Seryl_tRNA_N: Seryl-t 66.8 20 0.00043 28.0 5.8 24 205-228 71-94 (108)
91 PF12329 TMF_DNA_bd: TATA elem 66.7 39 0.00085 25.7 7.2 36 198-233 37-72 (74)
92 PF11932 DUF3450: Protein of u 66.6 27 0.00058 31.5 7.4 34 200-233 62-95 (251)
93 PHA00728 hypothetical protein 66.4 7.5 0.00016 33.5 3.5 24 201-224 5-28 (151)
94 PF05529 Bap31: B-cell recepto 66.2 34 0.00074 29.5 7.7 29 197-225 157-185 (192)
95 PF03980 Nnf1: Nnf1 ; InterPr 66.1 11 0.00023 29.9 4.2 31 193-223 79-109 (109)
96 PF13815 Dzip-like_N: Iguana/D 66.1 30 0.00065 28.1 6.9 34 196-229 82-115 (118)
97 PF11932 DUF3450: Protein of u 65.9 20 0.00043 32.3 6.4 36 198-233 53-88 (251)
98 KOG3156|consensus 65.8 28 0.00061 32.2 7.3 28 206-233 114-141 (220)
99 PF13851 GAS: Growth-arrest sp 65.7 63 0.0014 28.7 9.4 61 173-233 16-80 (201)
100 PF07407 Seadorna_VP6: Seadorn 65.3 12 0.00026 36.9 5.1 28 198-225 36-63 (420)
101 COG2433 Uncharacterized conser 65.0 21 0.00045 37.5 7.0 55 178-232 412-467 (652)
102 PF04568 IATP: Mitochondrial A 65.0 40 0.00087 27.5 7.4 29 201-229 69-97 (100)
103 COG2919 Septum formation initi 64.9 38 0.00082 27.6 7.3 23 201-223 64-86 (117)
104 PF07412 Geminin: Geminin; In 64.3 28 0.0006 31.8 6.9 12 166-177 100-111 (200)
105 KOG4571|consensus 64.2 34 0.00074 32.9 7.8 15 167-181 216-230 (294)
106 PF07028 DUF1319: Protein of u 64.0 87 0.0019 26.8 9.4 67 179-245 31-97 (126)
107 PF04102 SlyX: SlyX; InterPro 63.9 40 0.00087 25.1 6.7 39 194-232 4-42 (69)
108 TIGR03752 conj_TIGR03752 integ 63.7 21 0.00045 36.3 6.6 28 204-231 112-139 (472)
109 PF04880 NUDE_C: NUDE protein, 63.7 6.1 0.00013 34.8 2.6 36 195-232 19-54 (166)
110 PF03993 DUF349: Domain of Unk 63.6 53 0.0012 23.7 7.7 63 173-240 13-75 (77)
111 PRK14872 rod shape-determining 63.6 15 0.00032 35.8 5.4 60 173-233 30-89 (337)
112 PF04420 CHD5: CHD5-like prote 63.4 36 0.00078 29.2 7.2 23 211-233 69-91 (161)
113 COG2919 Septum formation initi 63.2 18 0.0004 29.5 5.2 32 199-230 55-86 (117)
114 PF14197 Cep57_CLD_2: Centroso 63.2 28 0.00061 26.4 5.8 33 188-220 34-66 (69)
115 PF02183 HALZ: Homeobox associ 62.7 29 0.00063 24.3 5.4 35 199-233 3-37 (45)
116 PF10205 KLRAQ: Predicted coil 62.5 44 0.00096 27.5 7.2 28 198-225 44-71 (102)
117 PF11382 DUF3186: Protein of u 62.0 19 0.0004 34.0 5.7 39 196-234 34-72 (308)
118 PF07106 TBPIP: Tat binding pr 61.8 19 0.00041 30.5 5.2 21 211-231 112-132 (169)
119 KOG1962|consensus 61.7 14 0.00031 33.9 4.7 29 201-229 158-186 (216)
120 cd07429 Cby_like Chibby, a nuc 61.6 20 0.00044 29.7 5.1 24 202-225 80-103 (108)
121 PF09744 Jnk-SapK_ap_N: JNK_SA 61.5 42 0.0009 29.2 7.3 58 176-233 55-114 (158)
122 PF10458 Val_tRNA-synt_C: Valy 61.3 18 0.00039 26.5 4.4 39 206-244 2-43 (66)
123 PF08232 Striatin: Striatin fa 61.0 87 0.0019 26.3 8.9 55 177-233 17-71 (134)
124 PTZ00454 26S protease regulato 60.5 41 0.00089 32.8 7.9 34 196-229 31-64 (398)
125 PF00038 Filament: Intermediat 60.0 98 0.0021 28.1 9.9 30 196-225 225-254 (312)
126 PF14775 NYD-SP28_assoc: Sperm 59.8 30 0.00066 25.5 5.3 31 203-233 28-58 (60)
127 PF10211 Ax_dynein_light: Axon 59.7 1.1E+02 0.0025 26.9 9.9 37 196-232 122-158 (189)
128 PF09006 Surfac_D-trimer: Lung 59.5 18 0.00038 26.1 3.8 23 211-233 2-24 (46)
129 TIGR02209 ftsL_broad cell divi 59.4 35 0.00076 25.3 5.8 31 198-228 28-58 (85)
130 PF14817 HAUS5: HAUS augmin-li 59.4 33 0.00072 35.9 7.4 42 188-229 73-114 (632)
131 KOG4797|consensus 59.3 23 0.0005 29.9 5.1 32 184-215 64-95 (123)
132 PF11461 RILP: Rab interacting 59.2 17 0.00038 27.3 4.0 33 201-233 3-35 (60)
133 COG4026 Uncharacterized protei 59.1 56 0.0012 30.9 8.1 35 197-231 138-172 (290)
134 TIGR00414 serS seryl-tRNA synt 58.8 59 0.0013 31.9 8.7 40 203-245 71-114 (418)
135 PF12718 Tropomyosin_1: Tropom 58.7 47 0.001 28.1 7.0 33 200-232 27-59 (143)
136 PF10883 DUF2681: Protein of u 58.2 26 0.00057 28.0 5.1 25 203-227 32-56 (87)
137 PLN02678 seryl-tRNA synthetase 58.1 34 0.00074 34.2 7.0 37 197-233 74-110 (448)
138 PF09738 DUF2051: Double stran 57.8 34 0.00075 32.6 6.7 35 203-237 142-176 (302)
139 COG1382 GimC Prefoldin, chaper 57.6 50 0.0011 27.8 6.9 51 180-233 59-109 (119)
140 PF14077 WD40_alt: Alternative 57.3 7 0.00015 28.3 1.5 23 211-233 14-36 (48)
141 PF10805 DUF2730: Protein of u 57.2 52 0.0011 26.4 6.8 41 193-233 48-90 (106)
142 PF05700 BCAS2: Breast carcino 57.2 1E+02 0.0022 27.6 9.3 41 193-233 174-214 (221)
143 PRK00295 hypothetical protein; 57.2 55 0.0012 24.6 6.4 38 195-232 6-43 (68)
144 PF07047 OPA3: Optic atrophy 3 57.1 27 0.00058 29.2 5.2 40 173-216 95-134 (134)
145 PF07061 Swi5: Swi5; InterPro 57.1 33 0.00071 26.9 5.4 26 205-230 4-29 (83)
146 PF10883 DUF2681: Protein of u 57.0 36 0.00078 27.2 5.7 34 201-234 23-56 (87)
147 KOG4673|consensus 56.7 35 0.00076 36.8 7.0 51 175-225 390-440 (961)
148 PRK13923 putative spore coat p 56.7 58 0.0013 29.0 7.5 40 195-234 112-151 (170)
149 COG0172 SerS Seryl-tRNA synthe 56.5 30 0.00065 34.7 6.3 26 199-224 73-98 (429)
150 PF04849 HAP1_N: HAP1 N-termin 56.4 18 0.00039 34.8 4.6 32 196-227 162-193 (306)
151 PTZ00454 26S protease regulato 56.1 48 0.001 32.3 7.6 42 197-238 25-66 (398)
152 PRK11239 hypothetical protein; 56.0 21 0.00045 32.9 4.7 28 197-224 186-213 (215)
153 COG5019 CDC3 Septin family pro 56.0 85 0.0018 31.2 9.1 55 179-233 313-367 (373)
154 PF09726 Macoilin: Transmembra 55.7 56 0.0012 34.6 8.4 38 193-230 544-581 (697)
155 PF12017 Tnp_P_element: Transp 55.4 25 0.00054 32.4 5.2 20 200-219 24-43 (236)
156 PRK05431 seryl-tRNA synthetase 55.2 89 0.0019 30.8 9.2 38 196-233 68-105 (425)
157 PRK02119 hypothetical protein; 55.2 60 0.0013 24.7 6.4 39 194-232 9-47 (73)
158 PRK04325 hypothetical protein; 55.2 60 0.0013 24.8 6.4 39 194-232 9-47 (74)
159 PF06156 DUF972: Protein of un 54.6 53 0.0012 26.8 6.5 36 198-233 19-54 (107)
160 PF07412 Geminin: Geminin; In 54.3 11 0.00025 34.2 2.8 19 199-217 130-148 (200)
161 COG3883 Uncharacterized protei 54.2 37 0.00079 32.2 6.2 38 196-233 61-98 (265)
162 PF05812 Herpes_BLRF2: Herpesv 54.2 20 0.00043 30.3 4.0 25 211-235 6-30 (118)
163 PRK00736 hypothetical protein; 54.1 66 0.0014 24.1 6.4 38 194-231 5-42 (68)
164 KOG4643|consensus 54.0 46 0.001 37.1 7.6 58 172-229 162-219 (1195)
165 PRK04406 hypothetical protein; 53.9 64 0.0014 24.8 6.4 39 194-232 11-49 (75)
166 TIGR03185 DNA_S_dndD DNA sulfu 53.8 76 0.0016 32.5 8.8 45 192-236 214-258 (650)
167 PF05266 DUF724: Protein of un 53.4 91 0.002 27.8 8.3 59 171-229 87-145 (190)
168 KOG3335|consensus 53.4 33 0.00071 30.9 5.4 37 196-232 101-137 (181)
169 KOG4657|consensus 53.4 47 0.001 31.2 6.6 35 199-233 91-125 (246)
170 TIGR01834 PHA_synth_III_E poly 52.9 18 0.00039 34.9 4.0 25 166-190 246-270 (320)
171 PF04508 Pox_A_type_inc: Viral 52.7 17 0.00037 22.7 2.5 20 209-228 2-21 (23)
172 TIGR02976 phageshock_pspB phag 52.7 32 0.00069 26.7 4.6 29 196-224 37-65 (75)
173 PRK02793 phi X174 lysis protei 52.7 70 0.0015 24.3 6.4 39 194-232 8-46 (72)
174 PF10805 DUF2730: Protein of u 52.6 83 0.0018 25.3 7.2 49 185-233 32-83 (106)
175 PF01486 K-box: K-box region; 52.5 55 0.0012 25.5 6.1 36 182-217 59-98 (100)
176 PF05384 DegS: Sensor protein 52.2 1.3E+02 0.0028 26.3 8.8 49 201-253 27-75 (159)
177 PF07989 Microtub_assoc: Micro 52.2 28 0.00061 26.7 4.3 29 198-226 4-32 (75)
178 PRK09039 hypothetical protein; 52.1 35 0.00076 32.7 5.8 24 203-226 139-162 (343)
179 PF02344 Myc-LZ: Myc leucine z 52.1 36 0.00079 22.8 4.1 25 205-229 5-29 (32)
180 PF13863 DUF4200: Domain of un 51.9 1.2E+02 0.0026 24.0 9.1 31 198-228 78-108 (126)
181 PF15070 GOLGA2L5: Putative go 51.6 71 0.0015 33.4 8.3 57 177-233 10-68 (617)
182 PF05103 DivIVA: DivIVA protei 51.2 7.6 0.00017 30.9 1.1 32 198-229 29-60 (131)
183 PRK10803 tol-pal system protei 51.1 27 0.00058 32.2 4.7 27 195-221 62-88 (263)
184 PF04999 FtsL: Cell division p 50.9 75 0.0016 24.4 6.5 27 196-222 44-70 (97)
185 PF12325 TMF_TATA_bd: TATA ele 50.9 1.2E+02 0.0026 25.3 8.1 10 214-223 74-83 (120)
186 PRK11637 AmiB activator; Provi 50.6 88 0.0019 30.3 8.3 23 205-227 100-122 (428)
187 PF11544 Spc42p: Spindle pole 50.6 69 0.0015 25.2 6.2 36 195-230 6-41 (76)
188 PF08614 ATG16: Autophagy prot 50.6 43 0.00093 29.1 5.7 6 67-72 18-23 (194)
189 TIGR00414 serS seryl-tRNA synt 50.6 59 0.0013 31.9 7.2 37 197-233 72-108 (418)
190 PRK03992 proteasome-activating 50.5 62 0.0013 31.1 7.3 34 200-233 14-47 (389)
191 PRK11239 hypothetical protein; 50.4 29 0.00063 32.0 4.7 31 201-231 183-213 (215)
192 PHA03155 hypothetical protein; 50.3 21 0.00045 30.1 3.5 22 197-218 11-32 (115)
193 PF01920 Prefoldin_2: Prefoldi 50.0 93 0.002 23.5 6.9 35 198-232 66-100 (106)
194 PRK14127 cell division protein 49.8 27 0.00058 28.9 4.0 32 198-229 41-72 (109)
195 PRK09413 IS2 repressor TnpA; R 49.8 43 0.00094 26.9 5.2 31 198-228 75-105 (121)
196 KOG0995|consensus 49.8 1.1E+02 0.0024 32.1 9.2 48 194-241 287-334 (581)
197 PF12718 Tropomyosin_1: Tropom 49.7 1.1E+02 0.0023 26.0 7.7 40 194-233 28-67 (143)
198 PRK13169 DNA replication intia 49.4 72 0.0016 26.4 6.5 36 198-233 19-54 (110)
199 PRK09866 hypothetical protein; 49.2 81 0.0018 33.9 8.3 63 183-248 421-483 (741)
200 KOG4797|consensus 49.1 42 0.00091 28.4 5.1 33 199-231 65-97 (123)
201 PF10779 XhlA: Haemolysin XhlA 48.9 87 0.0019 23.3 6.4 30 199-228 18-47 (71)
202 PHA03162 hypothetical protein; 48.9 25 0.00055 30.3 3.8 23 195-217 14-36 (135)
203 PF03154 Atrophin-1: Atrophin- 48.9 29 0.00063 38.2 5.1 21 160-180 566-586 (982)
204 PHA02047 phage lambda Rz1-like 48.8 76 0.0016 26.3 6.4 44 202-252 35-78 (101)
205 COG4694 Uncharacterized protei 48.5 45 0.00098 35.3 6.2 50 199-252 450-499 (758)
206 PF14645 Chibby: Chibby family 48.4 48 0.001 27.4 5.3 27 199-225 76-102 (116)
207 PRK11546 zraP zinc resistance 48.2 1.5E+02 0.0032 25.7 8.4 31 214-247 88-118 (143)
208 TIGR01242 26Sp45 26S proteasom 48.2 52 0.0011 30.9 6.2 34 202-235 7-40 (364)
209 KOG2391|consensus 48.1 2.9E+02 0.0064 27.5 13.2 22 54-75 35-56 (365)
210 PF06548 Kinesin-related: Kine 47.7 43 0.00094 34.2 5.9 34 200-233 447-484 (488)
211 KOG1853|consensus 47.6 1.4E+02 0.003 28.9 8.8 47 186-232 37-83 (333)
212 KOG2483|consensus 47.5 45 0.00097 30.9 5.5 37 187-223 105-141 (232)
213 PF06698 DUF1192: Protein of u 47.3 32 0.00069 25.7 3.7 21 212-232 25-45 (59)
214 PF04899 MbeD_MobD: MbeD/MobD 47.3 68 0.0015 24.6 5.6 36 197-232 31-66 (70)
215 PF13600 DUF4140: N-terminal d 47.1 59 0.0013 25.2 5.4 33 195-227 71-103 (104)
216 PF10481 CENP-F_N: Cenp-F N-te 47.1 93 0.002 30.1 7.7 47 187-233 81-127 (307)
217 PF02344 Myc-LZ: Myc leucine z 47.1 53 0.0012 22.1 4.3 25 198-222 5-29 (32)
218 KOG0996|consensus 47.0 66 0.0014 36.4 7.5 61 173-233 837-903 (1293)
219 PF10224 DUF2205: Predicted co 46.8 81 0.0018 24.8 6.1 33 196-228 25-57 (80)
220 PF11544 Spc42p: Spindle pole 46.5 38 0.00082 26.7 4.2 21 208-228 5-25 (76)
221 COG0172 SerS Seryl-tRNA synthe 46.5 1.1E+02 0.0023 30.9 8.3 22 204-225 71-92 (429)
222 TIGR01242 26Sp45 26S proteasom 46.5 58 0.0013 30.6 6.2 40 193-232 5-44 (364)
223 COG3074 Uncharacterized protei 46.1 88 0.0019 24.7 6.1 18 199-216 23-40 (79)
224 PF06785 UPF0242: Uncharacteri 45.8 75 0.0016 31.6 7.0 25 200-224 133-157 (401)
225 KOG1760|consensus 45.7 71 0.0015 27.5 6.0 35 198-232 85-119 (131)
226 PRK15422 septal ring assembly 45.4 90 0.002 24.8 6.1 20 210-229 48-67 (79)
227 PLN02320 seryl-tRNA synthetase 45.3 1.4E+02 0.0031 30.6 9.1 35 197-231 133-167 (502)
228 PF15035 Rootletin: Ciliary ro 45.0 1.1E+02 0.0023 27.2 7.3 35 199-233 86-120 (182)
229 KOG4673|consensus 44.9 93 0.002 33.8 7.9 52 182-233 713-764 (961)
230 PF04871 Uso1_p115_C: Uso1 / p 44.8 1.5E+02 0.0032 25.0 7.8 35 196-230 57-92 (136)
231 PHA01750 hypothetical protein 44.7 1.1E+02 0.0023 24.0 6.3 35 197-231 38-72 (75)
232 cd00890 Prefoldin Prefoldin is 44.4 91 0.002 24.5 6.2 36 198-233 91-126 (129)
233 KOG0249|consensus 43.9 1.2E+02 0.0025 33.1 8.4 55 175-229 182-258 (916)
234 smart00340 HALZ homeobox assoc 43.8 65 0.0014 23.0 4.6 35 199-233 3-37 (44)
235 PF04111 APG6: Autophagy prote 43.6 75 0.0016 30.1 6.6 35 197-231 46-80 (314)
236 cd00632 Prefoldin_beta Prefold 43.5 96 0.0021 24.4 6.2 47 183-232 55-101 (105)
237 PF10224 DUF2205: Predicted co 43.3 1.6E+02 0.0034 23.2 7.2 18 202-219 45-62 (80)
238 PHA02562 46 endonuclease subun 43.0 1.4E+02 0.003 29.3 8.4 6 67-72 118-123 (562)
239 KOG0982|consensus 42.9 1.1E+02 0.0023 31.4 7.7 39 183-222 287-325 (502)
240 PF09730 BicD: Microtubule-ass 42.7 42 0.00091 35.8 5.1 58 193-250 89-163 (717)
241 PF11853 DUF3373: Protein of u 42.5 24 0.00052 36.0 3.2 13 216-228 32-44 (489)
242 cd00890 Prefoldin Prefoldin is 42.2 82 0.0018 24.7 5.7 33 195-227 95-127 (129)
243 PRK13729 conjugal transfer pil 42.1 82 0.0018 32.2 6.8 11 204-214 79-89 (475)
244 PF12308 Noelin-1: Neurogenesi 42.0 86 0.0019 25.9 5.8 58 189-249 35-99 (101)
245 COG4420 Predicted membrane pro 42.0 1E+02 0.0022 28.0 6.8 44 190-233 123-166 (191)
246 PF15254 CCDC14: Coiled-coil d 41.9 69 0.0015 34.8 6.5 32 202-233 449-480 (861)
247 TIGR01062 parC_Gneg DNA topois 41.9 38 0.00083 36.0 4.7 56 197-252 412-468 (735)
248 KOG3433|consensus 41.8 1.1E+02 0.0024 28.1 6.9 34 185-218 107-140 (203)
249 PF08961 DUF1875: Domain of un 41.6 8.7 0.00019 35.8 0.0 33 195-227 130-162 (243)
250 PF05700 BCAS2: Breast carcino 41.5 1.7E+02 0.0036 26.2 8.1 43 191-233 165-207 (221)
251 KOG1962|consensus 41.4 63 0.0014 29.8 5.5 19 207-225 178-196 (216)
252 COG3937 Uncharacterized conser 41.3 1.1E+02 0.0023 25.6 6.3 20 211-230 86-105 (108)
253 COG1579 Zn-ribbon protein, pos 41.0 1.1E+02 0.0024 28.5 7.0 21 205-225 107-127 (239)
254 KOG3433|consensus 41.0 1.1E+02 0.0023 28.1 6.7 45 185-229 100-144 (203)
255 COG4345 Uncharacterized protei 41.0 1.2E+02 0.0025 27.5 6.8 36 198-233 122-157 (181)
256 PF15254 CCDC14: Coiled-coil d 40.9 1.5E+02 0.0033 32.4 8.8 13 181-193 403-415 (861)
257 COG1340 Uncharacterized archae 40.8 1.6E+02 0.0035 28.4 8.2 55 172-226 23-80 (294)
258 PF05812 Herpes_BLRF2: Herpesv 40.8 68 0.0015 27.1 5.1 26 196-221 5-30 (118)
259 PF06305 DUF1049: Protein of u 40.8 38 0.00083 24.1 3.3 12 202-213 56-67 (68)
260 PF03962 Mnd1: Mnd1 family; I 40.6 79 0.0017 27.9 5.8 70 163-233 53-128 (188)
261 TIGR01837 PHA_granule_1 poly(h 40.5 1.7E+02 0.0038 23.9 7.5 22 208-229 96-117 (118)
262 PF00816 Histone_HNS: H-NS his 40.3 54 0.0012 25.2 4.3 21 221-241 23-43 (93)
263 PF00261 Tropomyosin: Tropomyo 40.2 95 0.0021 27.9 6.4 35 199-233 188-222 (237)
264 PF13870 DUF4201: Domain of un 40.1 1.7E+02 0.0037 24.9 7.7 33 201-233 42-74 (177)
265 PF14257 DUF4349: Domain of un 40.0 1.2E+02 0.0027 27.2 7.1 34 199-232 160-193 (262)
266 TIGR02338 gimC_beta prefoldin, 39.9 95 0.0021 24.7 5.7 46 183-231 59-104 (110)
267 PF14645 Chibby: Chibby family 39.8 78 0.0017 26.2 5.3 33 201-233 71-103 (116)
268 COG1382 GimC Prefoldin, chaper 39.8 91 0.002 26.3 5.7 37 190-226 73-109 (119)
269 KOG0483|consensus 39.7 41 0.00088 30.4 3.9 33 199-231 117-149 (198)
270 PF01920 Prefoldin_2: Prefoldi 39.6 1.1E+02 0.0025 23.1 5.9 43 198-240 2-44 (106)
271 PF08826 DMPK_coil: DMPK coile 39.5 1.6E+02 0.0035 22.0 6.5 24 198-221 36-59 (61)
272 PF12017 Tnp_P_element: Transp 39.3 97 0.0021 28.6 6.4 26 206-231 16-41 (236)
273 PF03285 Paralemmin: Paralemmi 39.3 29 0.00063 33.0 3.1 31 194-224 3-33 (278)
274 TIGR01061 parC_Gpos DNA topois 39.2 94 0.002 33.0 7.1 54 199-252 417-471 (738)
275 PF14584 DUF4446: Protein of u 39.2 2E+02 0.0043 24.8 7.9 36 198-233 43-78 (151)
276 PF08232 Striatin: Striatin fa 39.1 1.8E+02 0.0039 24.4 7.5 39 195-233 26-64 (134)
277 TIGR01063 gyrA DNA gyrase, A s 39.1 1E+02 0.0023 32.9 7.4 54 199-252 417-471 (800)
278 PF05600 DUF773: Protein of un 39.0 2.6E+02 0.0056 28.5 9.8 68 165-233 424-492 (507)
279 PF08781 DP: Transcription fac 39.0 82 0.0018 27.3 5.5 26 202-227 2-27 (142)
280 PF01763 Herpes_UL6: Herpesvir 39.0 70 0.0015 33.2 5.9 36 195-230 371-406 (557)
281 PF04999 FtsL: Cell division p 39.0 1E+02 0.0022 23.7 5.6 32 198-229 39-70 (97)
282 KOG3584|consensus 38.9 78 0.0017 30.9 5.9 47 187-233 290-337 (348)
283 KOG4005|consensus 38.8 1.2E+02 0.0027 28.9 7.0 29 201-229 90-118 (292)
284 PF11853 DUF3373: Protein of u 38.6 40 0.00087 34.4 4.1 25 202-226 32-56 (489)
285 PF10018 Med4: Vitamin-D-recep 38.5 1.2E+02 0.0025 26.5 6.5 40 194-233 22-61 (188)
286 PHA03155 hypothetical protein; 38.5 45 0.00098 28.1 3.7 27 210-236 10-36 (115)
287 PF15619 Lebercilin: Ciliary p 38.4 65 0.0014 28.7 5.0 33 201-233 12-44 (194)
288 PRK00247 putative inner membra 38.3 62 0.0013 32.5 5.3 6 54-59 149-154 (429)
289 KOG2264|consensus 38.2 1.1E+02 0.0025 32.6 7.3 18 205-222 104-121 (907)
290 PF09304 Cortex-I_coil: Cortex 38.1 2.4E+02 0.0052 23.6 7.8 34 199-232 42-75 (107)
291 PRK00846 hypothetical protein; 37.9 1.3E+02 0.0028 23.6 6.0 35 195-229 14-48 (77)
292 PRK03992 proteasome-activating 37.9 1.4E+02 0.003 28.7 7.5 36 194-229 15-50 (389)
293 PF05769 DUF837: Protein of un 37.7 1.2E+02 0.0025 26.9 6.4 43 190-232 134-177 (181)
294 COG3883 Uncharacterized protei 37.5 94 0.002 29.5 6.1 46 188-233 67-113 (265)
295 PF08181 DegQ: DegQ (SacQ) fam 37.5 56 0.0012 23.3 3.5 11 242-252 27-37 (46)
296 PF08941 USP8_interact: USP8 i 37.5 12 0.00027 33.5 0.3 38 197-234 7-44 (179)
297 PRK10722 hypothetical protein; 37.4 1.5E+02 0.0032 28.1 7.3 60 172-233 145-208 (247)
298 PRK00846 hypothetical protein; 37.3 1.6E+02 0.0035 23.0 6.4 33 196-228 8-40 (77)
299 PF11577 NEMO: NF-kappa-B esse 37.1 36 0.00078 26.0 2.7 19 198-216 3-21 (68)
300 TIGR00293 prefoldin, archaeal 37.1 1.5E+02 0.0033 23.6 6.5 34 199-232 91-124 (126)
301 cd00632 Prefoldin_beta Prefold 37.1 1.2E+02 0.0025 23.9 5.7 27 199-225 75-101 (105)
302 PRK05560 DNA gyrase subunit A; 36.8 1.1E+02 0.0024 32.7 7.2 55 199-253 420-475 (805)
303 PRK15396 murein lipoprotein; P 36.8 79 0.0017 24.7 4.6 32 202-233 26-57 (78)
304 COG1792 MreC Cell shape-determ 36.8 1.1E+02 0.0024 28.7 6.4 23 211-233 86-108 (284)
305 PF11471 Sugarporin_N: Maltopo 36.7 83 0.0018 23.3 4.5 31 198-228 29-59 (60)
306 PRK04778 septation ring format 36.7 2.8E+02 0.0061 28.2 9.7 65 171-235 95-160 (569)
307 KOG0977|consensus 36.6 1.2E+02 0.0027 31.5 7.2 25 205-229 166-190 (546)
308 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.6 2.4E+02 0.0052 23.1 9.5 34 199-232 96-129 (132)
309 PF10226 DUF2216: Uncharacteri 36.5 1.5E+02 0.0032 27.2 6.9 37 196-232 103-139 (195)
310 PF10473 CENP-F_leu_zip: Leuci 36.3 2.8E+02 0.006 23.8 8.3 31 193-223 51-81 (140)
311 PF04102 SlyX: SlyX; InterPro 36.3 1.4E+02 0.0031 22.2 5.8 38 196-233 13-50 (69)
312 PF05557 MAD: Mitotic checkpoi 36.2 81 0.0018 32.8 6.0 33 194-226 503-535 (722)
313 PRK10947 global DNA-binding tr 36.1 1.2E+02 0.0026 25.8 6.0 39 204-242 38-76 (135)
314 PF04880 NUDE_C: NUDE protein, 36.1 41 0.00088 29.7 3.3 36 192-231 12-47 (166)
315 PF02388 FemAB: FemAB family; 36.1 1.7E+02 0.0038 28.3 7.9 27 209-235 274-300 (406)
316 PF14389 Lzipper-MIP1: Leucine 36.0 1E+02 0.0022 24.1 5.2 31 201-231 54-84 (88)
317 PF09789 DUF2353: Uncharacteri 35.9 91 0.002 30.2 5.9 36 199-234 77-112 (319)
318 TIGR02680 conserved hypothetic 35.9 1.3E+02 0.0028 34.1 7.8 48 190-240 738-785 (1353)
319 KOG0250|consensus 35.7 2.4E+02 0.0051 31.8 9.5 32 201-232 401-432 (1074)
320 PF07888 CALCOCO1: Calcium bin 35.6 1.3E+02 0.0028 31.3 7.2 14 133-147 102-115 (546)
321 KOG0977|consensus 35.6 2.2E+02 0.0047 29.8 8.7 31 199-229 146-176 (546)
322 PF14806 Coatomer_b_Cpla: Coat 35.4 22 0.00049 30.2 1.5 27 46-72 6-32 (129)
323 PF12999 PRKCSH-like: Glucosid 35.3 2.8E+02 0.0061 24.8 8.4 50 174-223 126-175 (176)
324 PF06667 PspB: Phage shock pro 35.2 42 0.00091 26.1 2.9 28 197-224 38-65 (75)
325 PF06698 DUF1192: Protein of u 35.0 1.5E+02 0.0032 22.2 5.6 26 197-222 24-49 (59)
326 PF08317 Spc7: Spc7 kinetochor 34.9 2.3E+02 0.005 26.7 8.3 25 50-74 12-38 (325)
327 PF10211 Ax_dynein_light: Axon 34.6 2.8E+02 0.0061 24.4 8.3 25 205-229 124-148 (189)
328 COG1842 PspA Phage shock prote 34.6 2.1E+02 0.0046 26.2 7.8 32 201-232 113-144 (225)
329 KOG4643|consensus 34.5 1.1E+02 0.0023 34.5 6.6 44 179-222 503-558 (1195)
330 PF07106 TBPIP: Tat binding pr 34.4 93 0.002 26.3 5.2 25 205-229 113-137 (169)
331 COG3074 Uncharacterized protei 34.2 1.4E+02 0.0031 23.5 5.6 25 199-223 37-61 (79)
332 PF15030 DUF4527: Protein of u 34.1 95 0.0021 29.6 5.5 36 187-222 44-86 (277)
333 KOG0250|consensus 34.1 2.6E+02 0.0057 31.5 9.5 30 204-233 390-419 (1074)
334 PRK09343 prefoldin subunit bet 33.9 1.3E+02 0.0029 24.6 5.8 24 201-224 85-108 (121)
335 PF13863 DUF4200: Domain of un 33.8 2.4E+02 0.0052 22.3 9.0 33 201-233 74-106 (126)
336 PF09744 Jnk-SapK_ap_N: JNK_SA 33.7 2E+02 0.0043 25.1 7.1 34 191-224 86-119 (158)
337 PF10168 Nup88: Nuclear pore c 33.7 1.5E+02 0.0032 31.6 7.4 51 200-250 638-695 (717)
338 PF02996 Prefoldin: Prefoldin 33.5 1.1E+02 0.0025 23.8 5.2 27 205-231 88-114 (120)
339 COG4942 Membrane-bound metallo 33.3 2.4E+02 0.0053 28.5 8.5 49 185-233 50-98 (420)
340 PF06216 RTBV_P46: Rice tungro 33.3 1.2E+02 0.0027 29.3 6.2 45 189-233 73-117 (389)
341 COG0255 RpmC Ribosomal protein 33.2 1.4E+02 0.003 22.9 5.4 42 209-250 12-53 (69)
342 PF02996 Prefoldin: Prefoldin 32.8 1.4E+02 0.0031 23.2 5.6 32 196-227 86-117 (120)
343 PF01486 K-box: K-box region; 32.7 97 0.0021 24.1 4.6 32 201-232 68-99 (100)
344 KOG0837|consensus 32.7 1.8E+02 0.0039 27.9 7.1 33 201-233 227-259 (279)
345 PF11598 COMP: Cartilage oligo 32.3 1.9E+02 0.004 20.6 6.4 36 198-233 5-40 (45)
346 PF05308 Mito_fiss_reg: Mitoch 32.3 62 0.0013 30.2 4.0 22 199-220 120-141 (253)
347 PF07200 Mod_r: Modifier of ru 32.2 2.9E+02 0.0062 22.7 8.3 44 189-232 36-79 (150)
348 PF07439 DUF1515: Protein of u 32.1 2.7E+02 0.0059 23.5 7.3 46 180-225 26-71 (112)
349 TIGR02338 gimC_beta prefoldin, 32.1 2.3E+02 0.0051 22.5 6.8 29 198-226 78-106 (110)
350 PRK09039 hypothetical protein; 31.9 3.7E+02 0.008 25.8 9.2 33 200-232 122-154 (343)
351 PF07558 Shugoshin_N: Shugoshi 31.9 55 0.0012 22.9 2.8 23 206-228 12-34 (46)
352 PF05266 DUF724: Protein of un 31.8 3.7E+02 0.0081 23.9 8.9 36 193-228 130-165 (190)
353 PF12592 DUF3763: Protein of u 31.8 1.3E+02 0.0029 22.1 4.9 41 210-250 2-45 (57)
354 PF04201 TPD52: Tumour protein 31.8 1.6E+02 0.0034 26.2 6.2 38 207-248 28-65 (162)
355 smart00721 BAR BAR domain. 31.6 1.7E+02 0.0036 25.0 6.3 8 53-60 49-56 (239)
356 COG4238 Murein lipoprotein [Ce 31.3 1.6E+02 0.0034 23.4 5.5 32 202-233 26-57 (78)
357 PF01608 I_LWEQ: I/LWEQ domain 31.3 1.2E+02 0.0025 26.5 5.3 33 191-223 115-147 (152)
358 PRK05561 DNA topoisomerase IV 31.3 86 0.0019 33.4 5.3 54 199-252 427-481 (742)
359 PF09766 FimP: Fms-interacting 31.3 1.6E+02 0.0035 28.4 6.7 36 195-230 109-144 (355)
360 PF02994 Transposase_22: L1 tr 31.2 1E+02 0.0023 29.8 5.5 51 192-242 149-203 (370)
361 PF12325 TMF_TATA_bd: TATA ele 31.2 1.6E+02 0.0034 24.6 5.9 30 199-228 49-81 (120)
362 PF07352 Phage_Mu_Gam: Bacteri 31.1 3.1E+02 0.0068 22.9 7.9 51 182-232 6-56 (149)
363 PF04012 PspA_IM30: PspA/IM30 31.1 3.6E+02 0.0077 23.5 9.1 11 242-252 148-158 (221)
364 PF15397 DUF4618: Domain of un 31.1 2.3E+02 0.0049 26.8 7.5 34 197-230 77-110 (258)
365 PF06637 PV-1: PV-1 protein (P 30.9 2.2E+02 0.0047 28.9 7.6 28 204-231 352-379 (442)
366 PRK06798 fliD flagellar cappin 30.9 2.7E+02 0.0059 27.7 8.4 35 199-233 402-436 (440)
367 PHA02562 46 endonuclease subun 30.9 1.3E+02 0.0029 29.4 6.2 30 204-233 216-245 (562)
368 PF13600 DUF4140: N-terminal d 30.8 1.4E+02 0.003 23.1 5.2 24 197-220 80-103 (104)
369 PF07544 Med9: RNA polymerase 30.7 1.9E+02 0.0041 22.3 5.9 29 201-229 52-80 (83)
370 PF07798 DUF1640: Protein of u 30.6 1.4E+02 0.003 25.7 5.7 19 204-222 76-94 (177)
371 PF07888 CALCOCO1: Calcium bin 30.5 3.5E+02 0.0075 28.3 9.3 29 201-229 206-234 (546)
372 TIGR01834 PHA_synth_III_E poly 30.5 3.3E+02 0.0072 26.5 8.7 24 198-221 293-316 (320)
373 cd07429 Cby_like Chibby, a nuc 30.3 1.4E+02 0.0031 24.8 5.4 32 202-233 73-104 (108)
374 COG2916 Hns DNA-binding protei 30.2 3.5E+02 0.0076 23.1 8.6 46 196-241 23-69 (128)
375 PRK09973 putative outer membra 30.2 1.1E+02 0.0025 24.4 4.6 32 202-233 25-56 (85)
376 KOG0709|consensus 30.2 63 0.0014 33.0 3.9 62 162-227 236-298 (472)
377 PRK04406 hypothetical protein; 30.2 2.5E+02 0.0055 21.5 6.6 35 199-233 23-57 (75)
378 KOG1055|consensus 30.1 31 0.00067 37.4 1.8 39 196-234 754-792 (865)
379 PF06210 DUF1003: Protein of u 30.1 2.7E+02 0.0059 22.8 7.0 23 203-225 75-97 (108)
380 PF05769 DUF837: Protein of un 29.9 1.5E+02 0.0033 26.2 5.9 32 201-232 70-101 (181)
381 PF11414 Suppressor_APC: Adeno 29.6 1.6E+02 0.0035 23.2 5.4 35 199-233 5-39 (84)
382 PRK00295 hypothetical protein; 29.6 2.4E+02 0.0053 21.1 6.5 37 197-233 15-51 (68)
383 cd07624 BAR_SNX7_30 The Bin/Am 29.6 3.8E+02 0.0082 23.4 8.3 32 198-229 124-155 (200)
384 PF11221 Med21: Subunit 21 of 29.4 2.1E+02 0.0046 24.0 6.4 33 201-233 104-140 (144)
385 PRK03947 prefoldin subunit alp 29.4 2.3E+02 0.0049 23.1 6.5 19 206-224 113-131 (140)
386 COG5509 Uncharacterized small 29.3 99 0.0021 23.7 3.9 21 212-232 29-49 (65)
387 PF14775 NYD-SP28_assoc: Sperm 29.3 93 0.002 22.9 3.8 20 199-218 38-57 (60)
388 cd00584 Prefoldin_alpha Prefol 29.3 1.8E+02 0.0038 23.3 5.7 29 203-231 96-124 (129)
389 PF11365 DUF3166: Protein of u 29.2 1.9E+02 0.0042 23.5 5.9 13 219-231 33-45 (96)
390 PF15035 Rootletin: Ciliary ro 29.1 1.9E+02 0.0042 25.6 6.4 32 197-228 70-101 (182)
391 PF09726 Macoilin: Transmembra 29.0 2E+02 0.0044 30.5 7.5 58 171-228 416-487 (697)
392 PF14362 DUF4407: Domain of un 29.0 3.6E+02 0.0079 24.7 8.4 35 198-232 132-166 (301)
393 PF05278 PEARLI-4: Arabidopsis 28.9 3.9E+02 0.0084 25.5 8.7 27 201-227 214-240 (269)
394 PF09006 Surfac_D-trimer: Lung 28.8 2E+02 0.0043 20.8 5.1 29 204-232 2-30 (46)
395 PF14662 CCDC155: Coiled-coil 28.7 1.3E+02 0.0028 27.4 5.3 40 181-221 83-122 (193)
396 PF13166 AAA_13: AAA domain 28.7 5.9E+02 0.013 25.9 10.5 44 205-252 428-471 (712)
397 PF08912 Rho_Binding: Rho Bind 28.4 1.9E+02 0.004 22.4 5.3 30 202-231 4-33 (69)
398 PF05837 CENP-H: Centromere pr 28.2 2.7E+02 0.0059 22.3 6.6 44 185-228 22-71 (106)
399 PF14282 FlxA: FlxA-like prote 28.0 1.9E+02 0.0041 23.2 5.7 21 212-232 48-68 (106)
400 PF06160 EzrA: Septation ring 28.0 4.7E+02 0.01 26.7 9.7 65 172-236 92-157 (560)
401 COG3879 Uncharacterized protei 27.9 1.4E+02 0.0031 28.1 5.6 9 222-230 96-104 (247)
402 PF04380 BMFP: Membrane fusoge 27.9 1.4E+02 0.003 22.9 4.6 29 200-228 49-77 (79)
403 PF15335 CAAP1: Caspase activi 27.9 28 0.00062 26.5 0.8 21 53-76 4-24 (64)
404 KOG3436|consensus 27.8 3E+02 0.0066 23.5 7.0 63 185-247 3-89 (123)
405 PF02403 Seryl_tRNA_N: Seryl-t 27.8 2.9E+02 0.0063 21.4 9.2 18 203-220 76-93 (108)
406 COG5185 HEC1 Protein involved 27.7 1.7E+02 0.0036 30.6 6.3 40 202-241 331-370 (622)
407 PF10168 Nup88: Nuclear pore c 27.7 6.5E+02 0.014 26.9 10.9 53 197-249 582-641 (717)
408 PRK02793 phi X174 lysis protei 27.7 2.7E+02 0.0059 21.0 6.5 36 198-233 19-54 (72)
409 TIGR02449 conserved hypothetic 27.6 2.1E+02 0.0046 21.7 5.5 32 196-227 23-54 (65)
410 KOG0933|consensus 27.5 3.5E+02 0.0077 30.6 9.1 42 192-233 799-840 (1174)
411 PF09727 CortBP2: Cortactin-bi 27.5 4.7E+02 0.01 23.8 9.0 54 174-227 95-160 (192)
412 PF10205 KLRAQ: Predicted coil 27.4 2.7E+02 0.0058 23.0 6.4 61 173-233 6-72 (102)
413 PHA03162 hypothetical protein; 27.3 88 0.0019 27.1 3.8 25 210-234 15-39 (135)
414 PRK10636 putative ABC transpor 27.3 1.5E+02 0.0033 30.4 6.2 31 203-233 558-588 (638)
415 PF14662 CCDC155: Coiled-coil 27.3 1.5E+02 0.0032 27.0 5.4 37 197-233 25-61 (193)
416 PRK02119 hypothetical protein; 27.3 2.8E+02 0.0061 21.1 6.5 36 198-233 20-55 (73)
417 PF05911 DUF869: Plant protein 27.3 2.2E+02 0.0048 30.7 7.5 39 187-225 127-165 (769)
418 COG3132 Uncharacterized protei 27.3 81 0.0018 28.9 3.7 23 199-221 190-212 (215)
419 COG3352 FlaC Putative archaeal 27.2 2.2E+02 0.0048 25.3 6.3 39 195-233 73-111 (157)
420 cd07596 BAR_SNX The Bin/Amphip 27.1 3.7E+02 0.008 22.4 9.4 23 202-224 146-168 (218)
421 PF09340 NuA4: Histone acetylt 27.1 1.4E+02 0.003 23.1 4.5 26 198-223 6-31 (80)
422 PF09849 DUF2076: Uncharacteri 27.0 1.1E+02 0.0024 28.6 4.6 28 199-226 46-73 (247)
423 PRK05771 V-type ATP synthase s 26.9 2.7E+02 0.0058 28.6 7.8 34 200-233 92-125 (646)
424 TIGR01730 RND_mfp RND family e 26.8 2.7E+02 0.0058 24.7 7.0 30 203-232 104-133 (322)
425 PF07334 IFP_35_N: Interferon- 26.8 96 0.0021 24.4 3.6 33 197-229 3-35 (76)
426 PRK05771 V-type ATP synthase s 26.8 1.7E+02 0.0036 30.1 6.4 35 195-229 94-128 (646)
427 PF05546 She9_MDM33: She9 / Md 26.7 1.1E+02 0.0024 28.1 4.6 51 201-251 32-82 (207)
428 PF09457 RBD-FIP: FIP domain ; 26.6 2.4E+02 0.0052 20.2 5.3 31 197-227 3-33 (48)
429 PF12128 DUF3584: Protein of u 26.5 4.1E+02 0.0089 29.7 9.6 64 172-235 819-882 (1201)
430 KOG3156|consensus 26.4 1.5E+02 0.0033 27.6 5.3 23 201-223 116-138 (220)
431 TIGR02780 TrbJ_Ti P-type conju 26.4 1.3E+02 0.0028 27.4 5.0 40 212-251 47-86 (246)
432 KOG0447|consensus 26.4 1.7E+02 0.0037 31.5 6.3 21 213-233 249-269 (980)
433 PF08581 Tup_N: Tup N-terminal 26.3 2.4E+02 0.0052 22.0 5.7 26 198-223 29-54 (79)
434 PF09304 Cortex-I_coil: Cortex 26.0 2.1E+02 0.0046 23.8 5.7 43 187-229 23-65 (107)
435 TIGR00985 3a0801s04tom mitocho 26.0 2.2E+02 0.0048 24.7 6.1 10 168-177 31-40 (148)
436 PF10234 Cluap1: Clusterin-ass 26.0 3.9E+02 0.0084 25.4 8.1 44 190-233 172-215 (267)
437 PF14182 YgaB: YgaB-like prote 25.9 3.1E+02 0.0067 21.8 6.3 27 207-233 39-65 (79)
438 PF09766 FimP: Fms-interacting 25.9 1.9E+02 0.0042 27.8 6.3 27 205-231 126-152 (355)
439 PF04783 DUF630: Protein of un 25.8 89 0.0019 23.4 3.1 22 181-202 10-31 (60)
440 TIGR02971 heterocyst_DevB ABC 25.7 3.9E+02 0.0083 24.4 7.9 47 198-245 94-140 (327)
441 PRK04325 hypothetical protein; 25.6 3E+02 0.0066 20.9 6.5 36 198-233 20-55 (74)
442 PF08537 NBP1: Fungal Nap bind 25.4 2.3E+02 0.0051 27.7 6.7 29 201-229 175-203 (323)
443 COG3879 Uncharacterized protei 25.4 1.9E+02 0.0042 27.2 5.9 31 198-228 54-84 (247)
444 PF09730 BicD: Microtubule-ass 25.3 4.3E+02 0.0093 28.5 9.1 62 172-233 373-437 (717)
445 cd00187 TOP4c DNA Topoisomeras 25.3 1.6E+02 0.0035 29.5 5.8 45 202-250 398-443 (445)
446 cd00584 Prefoldin_alpha Prefol 25.2 3.3E+02 0.0072 21.7 6.7 32 195-226 95-126 (129)
447 PRK00736 hypothetical protein; 25.2 2.9E+02 0.0064 20.6 6.5 38 196-233 14-51 (68)
448 PF06818 Fez1: Fez1; InterPro 25.2 3.1E+02 0.0068 25.1 7.1 35 200-234 72-106 (202)
449 PF03962 Mnd1: Mnd1 family; I 25.1 4.8E+02 0.01 23.0 10.0 17 202-218 111-127 (188)
450 PF15188 CCDC-167: Coiled-coil 25.0 3.6E+02 0.0078 21.5 6.8 51 179-229 8-64 (85)
451 PRK01156 chromosome segregatio 24.8 2.6E+02 0.0057 29.5 7.5 41 199-239 414-457 (895)
452 COG4191 Signal transduction hi 24.8 4.2E+02 0.0092 28.1 8.8 47 190-236 331-380 (603)
453 PF00261 Tropomyosin: Tropomyo 24.7 2E+02 0.0044 25.8 5.8 38 196-233 178-215 (237)
454 PRK03947 prefoldin subunit alp 24.6 2.7E+02 0.0058 22.7 6.1 35 199-233 99-133 (140)
455 PRK09343 prefoldin subunit bet 24.5 3.2E+02 0.0069 22.4 6.5 31 199-229 76-106 (121)
456 PRK05729 valS valyl-tRNA synth 24.5 1.1E+02 0.0024 32.7 4.7 30 206-235 809-838 (874)
457 PRK14872 rod shape-determining 24.5 1.7E+02 0.0036 28.7 5.5 35 198-232 61-98 (337)
458 PLN03188 kinesin-12 family pro 24.4 1.3E+02 0.0029 34.3 5.4 34 200-233 1217-1254(1320)
459 COG4942 Membrane-bound metallo 24.3 4.6E+02 0.0099 26.6 8.6 34 200-233 51-84 (420)
460 PF05565 Sipho_Gp157: Siphovir 24.3 2.5E+02 0.0053 24.0 6.0 35 199-233 52-86 (162)
461 KOG1029|consensus 24.3 4.3E+02 0.0093 29.4 8.8 18 212-229 434-451 (1118)
462 PRK10636 putative ABC transpor 24.1 1.4E+02 0.003 30.6 5.2 29 197-225 559-587 (638)
463 COG3122 Uncharacterized protei 24.0 5.8E+02 0.012 23.6 8.5 49 184-232 66-118 (215)
464 TIGR01843 type_I_hlyD type I s 24.0 5.8E+02 0.013 23.6 10.7 40 198-238 155-194 (423)
465 KOG0982|consensus 24.0 1.2E+02 0.0027 31.0 4.7 33 199-233 290-322 (502)
466 PF09602 PhaP_Bmeg: Polyhydrox 24.0 4.2E+02 0.009 23.7 7.4 40 190-232 26-65 (165)
467 PF15456 Uds1: Up-regulated Du 23.9 4.3E+02 0.0094 22.1 7.5 39 196-234 76-114 (124)
468 PF03961 DUF342: Protein of un 23.9 1.9E+02 0.0041 28.4 5.9 25 209-233 376-400 (451)
469 PLN03230 acetyl-coenzyme A car 23.9 1.5E+02 0.0034 29.9 5.3 14 213-226 103-116 (431)
470 PF00831 Ribosomal_L29: Riboso 23.8 2.8E+02 0.0061 19.9 5.9 41 209-249 8-48 (58)
471 PF04728 LPP: Lipoprotein leuc 23.8 3.1E+02 0.0067 20.4 6.3 35 195-229 4-38 (56)
472 KOG4593|consensus 23.8 2.9E+02 0.0063 29.8 7.5 25 209-233 601-625 (716)
473 COG3937 Uncharacterized conser 23.8 1.6E+02 0.0036 24.6 4.6 23 203-225 85-107 (108)
474 PRK10328 DNA binding protein, 23.4 2.7E+02 0.0058 23.7 6.0 38 205-242 39-76 (134)
475 PRK01203 prefoldin subunit alp 23.3 1.7E+02 0.0037 24.9 4.8 31 199-229 5-35 (130)
476 PF14817 HAUS5: HAUS augmin-li 23.3 1.1E+02 0.0024 32.2 4.4 21 205-225 83-103 (632)
477 PF15290 Syntaphilin: Golgi-lo 23.3 2.3E+02 0.0049 27.6 6.1 56 193-252 74-150 (305)
478 KOG2010|consensus 23.2 3.2E+02 0.0069 27.3 7.2 57 172-236 154-210 (405)
479 PF05597 Phasin: Poly(hydroxya 23.2 1E+02 0.0023 26.1 3.5 21 208-228 109-129 (132)
480 PF14131 DUF4298: Domain of un 23.0 2.8E+02 0.0062 21.6 5.7 37 195-231 1-40 (90)
481 cd01109 HTH_YyaN Helix-Turn-He 22.9 2.6E+02 0.0056 22.0 5.5 29 203-231 81-109 (113)
482 PF08286 Spc24: Spc24 subunit 22.8 29 0.00063 28.1 0.1 25 204-228 16-40 (118)
483 PF04822 Takusan: Takusan; In 22.8 2.1E+02 0.0046 22.6 4.9 26 208-233 19-44 (84)
484 PF08606 Prp19: Prp19/Pso4-lik 22.7 2.4E+02 0.0052 21.9 5.0 29 198-226 12-40 (70)
485 PHA02675 ORF104 fusion protein 22.7 3.9E+02 0.0085 21.7 6.4 38 196-233 39-76 (90)
486 PF05103 DivIVA: DivIVA protei 22.7 27 0.00058 27.7 -0.2 51 197-247 35-85 (131)
487 PF15456 Uds1: Up-regulated Du 22.7 2.1E+02 0.0046 23.9 5.2 31 200-230 21-51 (124)
488 COG3599 DivIVA Cell division i 22.6 1.9E+02 0.0041 26.4 5.3 34 197-230 33-66 (212)
489 KOG4809|consensus 22.6 2.3E+02 0.005 30.0 6.3 61 186-249 316-376 (654)
490 PRK04863 mukB cell division pr 22.6 5.8E+02 0.013 29.7 10.0 68 169-236 981-1048(1486)
491 PF11221 Med21: Subunit 21 of 22.6 4.2E+02 0.0091 22.2 7.0 43 188-233 98-140 (144)
492 PF07889 DUF1664: Protein of u 22.5 4.2E+02 0.0091 22.4 6.9 66 183-248 57-122 (126)
493 COG3923 PriC Primosomal replic 22.5 5.8E+02 0.013 23.0 8.4 55 173-227 116-173 (175)
494 TIGR00293 prefoldin, archaeal 22.5 2.9E+02 0.0063 22.0 5.8 35 197-231 2-36 (126)
495 KOG0483|consensus 22.4 1.4E+02 0.003 27.0 4.3 42 191-232 102-143 (198)
496 PF12001 DUF3496: Domain of un 22.3 2.4E+02 0.0052 23.5 5.3 36 198-233 4-40 (111)
497 COG1579 Zn-ribbon protein, pos 22.3 6.5E+02 0.014 23.5 10.1 77 172-250 20-99 (239)
498 PRK13902 alaS alanyl-tRNA synt 22.2 2.5E+02 0.0053 30.8 6.8 50 179-228 739-788 (900)
499 PF14943 MRP-S26: Mitochondria 22.2 5.5E+02 0.012 22.6 9.5 73 178-251 82-155 (170)
500 TIGR02977 phageshock_pspA phag 22.2 3.2E+02 0.0069 24.3 6.5 40 194-233 92-131 (219)
No 1
>KOG3119|consensus
Probab=99.77 E-value=9.5e-18 Score=152.72 Aligned_cols=72 Identities=49% Similarity=0.650 Sum_probs=67.8
Q ss_pred CCCCCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 162 KNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 162 k~~k~~~k~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
........+|++||+||+|||+||||||+|+|+++.++..|+..|++||+.|+.+|++|++|+..||.+|.+
T Consensus 183 ~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 183 KLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred cCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556678999999999999999999999999999999999999999999999999999999999999998
No 2
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.47 E-value=3.3e-13 Score=95.95 Aligned_cols=54 Identities=43% Similarity=0.614 Sum_probs=52.2
Q ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 170 NTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 170 ~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
+++.|+.||.|||+||+|||+|+|+...+++.++..|+.+|..|+.+|..|++|
T Consensus 1 ~~~~~~~rR~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 1 KDEEKRERRERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999999999999999999999999986
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.39 E-value=2.7e-12 Score=93.60 Aligned_cols=63 Identities=48% Similarity=0.620 Sum_probs=60.8
Q ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 170 NTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 170 ~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+++++++||.||++||++||+|++....+++.++..|+.+|..|+.+|..|+.|+..|+.++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999999875
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.04 E-value=1.9e-09 Score=78.58 Aligned_cols=60 Identities=47% Similarity=0.581 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 172 DEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.+-..||.||.+||++||.+++....+++.++..|+.+|..|+.+|..|+.++..|+...
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345679999999999999999999999999999999999999999999999999998653
No 5
>KOG4571|consensus
Probab=98.92 E-value=5.1e-09 Score=97.61 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=64.7
Q ss_pred CCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 165 KSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 165 k~~~k~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
.......+.|++||..|++||.|.|+|+|.....+..+++.|+++|++||.++..|++||..||++|+.+
T Consensus 219 ~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 219 HPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred CCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557789999999999999999999999999999999999999999999999999999999999864
No 6
>KOG0837|consensus
Probab=98.00 E-value=2.2e-05 Score=73.02 Aligned_cols=61 Identities=30% Similarity=0.329 Sum_probs=57.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 174 YKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 174 Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
-.++|.||.+||.|||.++-+|...++++|+.|..+|..|-..+..|...+..+|+-++.|
T Consensus 207 leRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 207 LERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999999999999999999999999999999988865
No 7
>KOG4005|consensus
Probab=97.79 E-value=0.00015 Score=67.17 Aligned_cols=53 Identities=32% Similarity=0.456 Sum_probs=45.8
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 171 TDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 171 dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
.++-.+|.-||..||.-+|++||.|..+|+..+..|++||..|+.+-+.|...
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777899999999999999999999999999999999888877766544
No 8
>KOG3584|consensus
Probab=97.69 E-value=8.1e-05 Score=70.42 Aligned_cols=48 Identities=33% Similarity=0.463 Sum_probs=41.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 179 ERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 179 eRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.||.+|||-||.|||+=..+|+.||..||..|..| -.||+.||+|+-+
T Consensus 297 mKNREAARECRRKKKEYVKCLENRVAVLENQNKaL-------IEELKtLKeLYc~ 344 (348)
T KOG3584|consen 297 MKNREAARECRRKKKEYVKCLENRVAVLENQNKAL-------IEELKTLKELYCH 344 (348)
T ss_pred HhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHH-------HHHHHHHHHHhhc
Confidence 69999999999999999999999999999999875 4566677777654
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.14 E-value=6.1e-06 Score=64.43 Aligned_cols=56 Identities=29% Similarity=0.382 Sum_probs=40.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+.++||-||..||++||.+|.....+++.++..|..+...|+.++..|..|++.|+
T Consensus 30 K~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk 85 (92)
T PF03131_consen 30 KQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999988777766666666665555555555555544433
No 10
>KOG3863|consensus
Probab=97.01 E-value=0.0016 Score=66.51 Aligned_cols=68 Identities=26% Similarity=0.410 Sum_probs=60.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhh
Q psy16107 176 RRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFD 250 (256)
Q Consensus 176 ~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~ 250 (256)
+||-||.+||.+||.+|-..+..++..+..|.+|.++|..+-.++.+++..+|+.|.. +.++|.++|.
T Consensus 493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~-------L~~~Vf~~lr 560 (604)
T KOG3863|consen 493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSE-------LYQEVFQQLR 560 (604)
T ss_pred ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 5777899999999999999999999999999999999999999999999999988874 6666666653
No 11
>KOG4343|consensus
Probab=96.92 E-value=0.0066 Score=61.68 Aligned_cols=52 Identities=31% Similarity=0.342 Sum_probs=45.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 177 RRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 177 RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
|-.||.+.|--||.|||+-..-|+.++..|.+||+.||++-..|++.|..|-
T Consensus 285 RmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 285 RMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 6679999999999999999999999988888888888888888888777653
No 12
>KOG0709|consensus
Probab=96.51 E-value=0.004 Score=61.93 Aligned_cols=60 Identities=30% Similarity=0.334 Sum_probs=52.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 174 YKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 174 Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+|-.||.+.|.-||.|||+=...++.||..-.+||.+|+++|++|+.+...|-..|.+
T Consensus 252 rvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 252 RVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred HHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 344556899999999999999999999999999999999999999999987766666654
No 13
>KOG1414|consensus
Probab=95.81 E-value=0.00057 Score=65.78 Aligned_cols=76 Identities=24% Similarity=0.232 Sum_probs=68.6
Q ss_pred CCCCCCCCCHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy16107 163 NGKSVDKNTDEYKRRRERNNIAVRK---SREKAKIRSRETEEKVKLLV-KENERLQKRIELLSEELNVLRSLFTNVGVLP 238 (256)
Q Consensus 163 ~~k~~~k~dd~Yr~RReRNNiAaRK---SReKrK~R~~el~~kv~~Le-~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lp 238 (256)
........+.++..||+||-.||.+ ||.+++.....++..++.|+ .+|..|..+|..|..|.+.|..++.-|..++
T Consensus 144 ~~~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~~h~~~~ 223 (395)
T KOG1414|consen 144 PSVLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELNTHRPPC 223 (395)
T ss_pred CCCCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHhccCCCc
Confidence 3444556678899999999999999 99999999999999999999 9999999999999999999999999887644
No 14
>KOG4196|consensus
Probab=94.52 E-value=0.37 Score=41.26 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=48.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 179 ERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 179 eRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-||.-=|.-||-||-+...+++.+-.+|..+.+.|+.++..+..|++.||.-+.+
T Consensus 59 LKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 59 LKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998888888888888888888888888888876654
No 15
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.52 E-value=0.94 Score=41.77 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 185 VRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 185 aRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
|..=||+=|+|..|+++++..+..++..|+.+|+.|+++.-.|=
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999866554
No 16
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=90.27 E-value=0.72 Score=36.05 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+.+|.+||.+|+.+|..|+.|++.++.-|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~q 31 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQ 31 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 357899999999999999999999887643
No 17
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.21 E-value=2.3 Score=37.47 Aligned_cols=29 Identities=45% Similarity=0.517 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+...|+.++..|+.+++.|++|+..|..
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544
No 18
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.69 E-value=1.8 Score=31.47 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT-NVGV 236 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~-q~~~ 236 (256)
+....+++.+..+|+.+|+.|+.+|+.|+..-+.+..+-+ ..|+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 3445566777777788888888888877555565555555 4455
No 19
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.67 E-value=1.7 Score=30.50 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+....+.|..+|+.|+.+.+.|..|+..|+..+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566777777777777777777777777655
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.36 E-value=2.8 Score=32.10 Aligned_cols=39 Identities=23% Similarity=0.131 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
+-.....++.++.+|+.+|..|..+.+.|+.|...|+.-
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334455667777777777777777777777777777743
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=88.14 E-value=1.9 Score=32.71 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.|...+-..+.+|+.||..|+.+++.++.|-..|++-...
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888999999999999999999998888775443
No 22
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=88.04 E-value=1.2 Score=35.91 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
++..+++++..+|+.+|+.|+.+|+.|+...+.+.++-+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 344455666677777777777777777765555555544
No 23
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.19 E-value=5.2 Score=30.36 Aligned_cols=51 Identities=31% Similarity=0.382 Sum_probs=31.7
Q ss_pred HHHhhhHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 177 RRERNNIAVRKSRE-----K--AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 177 RReRNNiAaRKSRe-----K--rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
-|.||..|++|.=. | +++|+. ...++...-.+|.+|+.+++.|++|++.++
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~-~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDS-AERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777777776431 1 112211 223455667788888888888888877665
No 24
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=86.89 E-value=0.74 Score=32.36 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=13.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 175 r~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie 218 (256)
++++-++|.-..|.-.....+..+++.++..|..||..||.++-
T Consensus 2 k~k~~~qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 45677888888888888888888888899999999999888764
No 25
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=86.54 E-value=1.6 Score=35.32 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
...++.||.+|+++|.+|+.|++.||...
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888888765
No 26
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=86.17 E-value=1.8 Score=39.18 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIE---LLSEELNVLRSLFT 232 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie---~L~kEl~~LK~ll~ 232 (256)
.++.++-++|++||+.|+.++. .|++|.+.||.+|.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555566666666666665 56777777777765
No 27
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=85.92 E-value=7.3 Score=28.14 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
....+..|+.....|..+...|..++..|+..+.+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999887765
No 28
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=85.82 E-value=1.9 Score=33.09 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-++.+.++|..|+..++.|++|++.++.+|.+
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999998876
No 29
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=85.72 E-value=3.5 Score=33.27 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+-.++++++.+++++|++|+++.+.|+.|+..|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567888899999999999999999999999875
No 30
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=85.65 E-value=9 Score=30.72 Aligned_cols=58 Identities=33% Similarity=0.428 Sum_probs=34.9
Q ss_pred HHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 174 YKRRRERNNIAVRKSREKA-KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 174 Yr~RReRNNiAaRKSReKr-K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
|..|=+.-=.|.|||=++| ..+..+++.+...|..||+.|+.+++.-..|.+.|-.+|
T Consensus 28 YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 28 YSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555666666554 334455666666667777777776666666666554443
No 31
>KOG1414|consensus
Probab=85.00 E-value=0.2 Score=48.55 Aligned_cols=62 Identities=31% Similarity=0.404 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q psy16107 172 DEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQ-KRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk-~~Ie~L~kEl~~LK~ll~q 233 (256)
+++++-=+||-+|+-|||.+||.....++.++..+..+|..|. .+++.|..++..+...+.-
T Consensus 284 ~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~~~~~ 346 (395)
T KOG1414|consen 284 ERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQALLT 346 (395)
T ss_pred hhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhcccccc
Confidence 3343334899999999999999999999999999999999999 8888888888887654443
No 32
>KOG1318|consensus
Probab=84.87 E-value=2.9 Score=41.60 Aligned_cols=55 Identities=25% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchhhHHHHHhhh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGV--LPEHLHRELNKHFD 250 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~--lpe~~~~ev~~~l~ 250 (256)
..|++.+.+.|+..|..|..+|++|+.+...+...+..++- .++...+.|...++
T Consensus 292 ~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~~~~~~~~e~~i~~e~~ 348 (411)
T KOG1318|consen 292 ARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKLTNSLEGSEQIIKEESD 348 (411)
T ss_pred HHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhcch
Confidence 33444455555556666666666666655554444333321 45555555555554
No 33
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.70 E-value=2.5 Score=44.08 Aligned_cols=39 Identities=33% Similarity=0.469 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+...+..+++.|+.||..|+.+|++|++++..|+.-|.+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888888888888888888888877765
No 34
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.34 E-value=5.5 Score=29.81 Aligned_cols=39 Identities=36% Similarity=0.410 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
|-|.-...++.++.+-+..|..|..+|+.|+++++.+|.
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566677888899999999999999999999988873
No 35
>KOG1318|consensus
Probab=84.02 E-value=9 Score=38.18 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHH
Q psy16107 165 KSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETE---------------------------------EKVKLLVKENE 211 (256)
Q Consensus 165 k~~~k~dd~Yr~RReRNNiAaRKSReKrK~R~~el~---------------------------------~kv~~Le~EN~ 211 (256)
......+.++|+||+-=|+==||-|++=..++.+|. +++.+++..-.
T Consensus 221 ~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk 300 (411)
T KOG1318|consen 221 KTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQK 300 (411)
T ss_pred CcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334445566777777778888999999888887754 34445555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy16107 212 RLQKRIELLSEELNVLRSLFTNVGVLP 238 (256)
Q Consensus 212 ~Lk~~Ie~L~kEl~~LK~ll~q~~~lp 238 (256)
.|...+.+|...++.|+.+...+|..-
T Consensus 301 ~le~~n~~L~~rieeLk~~~~~~~~~~ 327 (411)
T KOG1318|consen 301 KLESTNQELALRIEELKSEAGRHGLQV 327 (411)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 777888899999999999999888733
No 36
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=83.60 E-value=4.1 Score=30.39 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCch
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV-GVLPEH 240 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~-~~lpe~ 240 (256)
.....++.+..+|+.||.+|+.+|..|.. .+.+.++=... |+.+..
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~~lgM~~p~ 77 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKKQLGMKLPD 77 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhcCCCCCC
Confidence 34455667788889999999999998886 56666666654 774443
No 37
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=82.62 E-value=2.1 Score=31.29 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 189 REKAKIRSRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 189 ReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
|+.+..-......++.+|+.||..|+++++.++
T Consensus 17 rE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 17 REARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555556667788889999999998887664
No 38
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.45 E-value=4.2 Score=29.54 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
..+..++..|+++++.|+.+++.|+.+++.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777777777777777
No 39
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.23 E-value=7.6 Score=29.72 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.+..+++++...|..+|..|+.+..+|+.|-..+.
T Consensus 25 ~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 25 MENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666665554443
No 40
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.21 E-value=8 Score=34.14 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
+....+++.+++.|++||..|+.++..++.+...|-.++-.+
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888888888888888888888888777777654
No 41
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=81.80 E-value=3.8 Score=34.23 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
||+.|.+.|+....++.+.|+.+...|+.+|+.++
T Consensus 98 Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 98 RSARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555556666666666666666666554
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.89 E-value=5.6 Score=35.79 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
...+.+|+++|.+|+.+++.+++|++.|+..+..
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345557777777777777777777666655443
No 43
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.45 E-value=12 Score=32.23 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..++.+.+++|.+.|+.+|+..+.|++.||....
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777777777777777766544
No 44
>smart00338 BRLZ basic region leucin zipper.
Probab=79.91 E-value=16 Score=26.36 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
....+..|+.+...|..++..|..++..|+.-+..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888888888888888876554
No 45
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=79.85 E-value=8.4 Score=39.06 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16107 195 RSRETEEKVKLLV-------KENERLQKRIELLSEELNVLRSLFTNVG 235 (256)
Q Consensus 195 R~~el~~kv~~Le-------~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~ 235 (256)
+..+++++++.|+ +.+..+..+|+.|+.|+..|+..+...+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455555555554 5566888999999999999998885433
No 46
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=79.82 E-value=7.9 Score=35.04 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.....+|.+||++|++++.+|+.++..++.+..+
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~e 101 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQELEQLEAE 101 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999988876654
No 47
>PF15058 Speriolin_N: Speriolin N terminus
Probab=78.97 E-value=4.3 Score=36.92 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
.++.++|-.||++||++|..+ +|..+||.+|.+.
T Consensus 11 rhqierLv~ENeeLKKlVrLi-rEN~eLksaL~ea 44 (200)
T PF15058_consen 11 RHQIERLVRENEELKKLVRLI-RENHELKSALGEA 44 (200)
T ss_pred HHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 455677889999999998755 5778888887653
No 48
>KOG4196|consensus
Probab=78.58 E-value=6.5 Score=33.81 Aligned_cols=30 Identities=37% Similarity=0.410 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+||++|..|..+|+.|..|+..++.-+..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999988865554
No 49
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=78.29 E-value=18 Score=25.46 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
....+..|+.+...|..++..|..++..|+.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677888888888888888888887764
No 50
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.15 E-value=3.9 Score=30.75 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
++|+.|+.....|..++.+|+.|...||....
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56788888888999999999999999988644
No 51
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=77.51 E-value=3.8 Score=40.25 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
|+.||.+||++++.|+.|+..|+
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 52
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=76.36 E-value=6.9 Score=29.05 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++++|..+...|..+|.+|..++..||.-+..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ 35 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQA 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888888888888866554
No 53
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=76.08 E-value=9.7 Score=37.34 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCchhhHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRS----LFTNVGVLPEHLHREL 245 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~----ll~q~~~lpe~~~~ev 245 (256)
+.|..+...|+.+|..|++++..+.. ++.. ||.-.|..|
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---iPN~~~~~v 111 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLR---IPNLPHDSV 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCccC
Confidence 34555555666666666666554443 3444 555554443
No 54
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=75.09 E-value=24 Score=30.32 Aligned_cols=39 Identities=33% Similarity=0.507 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy16107 187 KSREKAKIRSRETEEKVKLLVK---ENERLQKRIELLSEELN 225 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~---EN~~Lk~~Ie~L~kEl~ 225 (256)
--|+..+....+....++.|+. .|+.|+.+|+.|+.++.
T Consensus 27 ~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3455556666666667777777 88889999999888887
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.73 E-value=19 Score=33.92 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=31.7
Q ss_pred HhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 179 ERNNIAVRKSR-EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 179 eRNNiAaRKSR-eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-|+-++.-+.- +.+|....+++.++..|+.+.+.+..++.+|..++..+..++..
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 33444555566666666666666666666666666666666654
No 56
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=74.64 E-value=6.8 Score=36.19 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=6.3
Q ss_pred hhhHHHHhhcCC
Q psy16107 65 EGLFTEILNQGQ 76 (256)
Q Consensus 65 d~~ladlf~~~~ 76 (256)
..|=.||.....
T Consensus 23 ~kLE~DL~~~~~ 34 (248)
T PF08172_consen 23 AKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHhc
Confidence 345556665543
No 57
>PLN02678 seryl-tRNA synthetase
Probab=74.09 E-value=16 Score=36.60 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCchhhHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLR----SLFTNVGVLPEHLHREL 245 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK----~ll~q~~~lpe~~~~ev 245 (256)
++|.++-..|+.+|..|+.++..+. .++.. ||.-.|.+|
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~---iPNi~~~~V 116 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKLKT---IGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCccC
Confidence 3444555555555555555554443 34444 666555554
No 58
>KOG4343|consensus
Probab=74.07 E-value=3.1 Score=42.99 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
=+.|.+++..+.+.|++||..||.+|+.|..|...||
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3556666777777777777777777777777655443
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.04 E-value=8.8 Score=35.26 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+-..+|+.+++.|..|..+||-+||++.-+++.+++
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999988775
No 60
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=73.98 E-value=6.4 Score=34.75 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chhhHHHHHhhh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLP-EHLHRELNKHFD 250 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lp-e~~~~ev~~~l~ 250 (256)
+..++.++|.|..-|+.-+..-++....||..| |+-| ..+.+.|++.+.
T Consensus 34 Lr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL---Git~l~elkqnlskg~~ 83 (162)
T PF04201_consen 34 LRSELAKVEEEIQTLRQVLAAKERHCAELKRKL---GITPLSELKQNLSKGWH 83 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---CCchHHHHHHHHHHHhH
Confidence 344555666666666666666666666666433 3322 244455555443
No 61
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.83 E-value=20 Score=34.20 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=48.5
Q ss_pred HHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcC
Q psy16107 177 RRERNNIAVRKSR-EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSY 252 (256)
Q Consensus 177 RReRNNiAaRKSR-eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~ 252 (256)
++-|+-++....- +.++....+++.++..|+...+.+..++.++..++..+...+.+ +..-...||....+.|
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~---~r~~t~~Ei~~Lk~~~ 280 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ---CRGFTFKEIEKLKEQL 280 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHH
Confidence 3444666665554 45556666777777777777777777888888888888887776 4555555555554444
No 62
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=73.54 E-value=8.3 Score=35.92 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q psy16107 220 LSEELNVLRSLFT 232 (256)
Q Consensus 220 L~kEl~~LK~ll~ 232 (256)
|++|...||++|.
T Consensus 96 l~~EN~rLr~LL~ 108 (283)
T TIGR00219 96 LKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHhc
Confidence 6778888888776
No 63
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.52 E-value=25 Score=31.17 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
+.|...+..+++.+.++++.++.+|++++..+...+..
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444433
No 64
>PLN02320 seryl-tRNA synthetase
Probab=73.25 E-value=10 Score=38.57 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCchhhHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLR----SLFTNVGVLPEHLHREL 245 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK----~ll~q~~~lpe~~~~ev 245 (256)
.++|..+-..|+.+|..|+.++..+. .+++. ||.-.|..|
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~---iPN~~h~~V 175 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQS---IPNMTHPDV 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCccC
Confidence 34555555666666666666654433 34444 555544443
No 65
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=73.10 E-value=17 Score=28.85 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIEL-------LSEELNVLRSLF 231 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~-------L~kEl~~LK~ll 231 (256)
..-++.++++|+.+|..|..++.. |..|...||+--
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344667777888877777776665 666666666543
No 66
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=73.09 E-value=10 Score=31.01 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
++..+.+|.+||.+|+.+.+.|...+..
T Consensus 27 LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 27 LKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 67
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.77 E-value=34 Score=30.46 Aligned_cols=48 Identities=33% Similarity=0.400 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 186 RKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 186 RKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+=...|.+-..++.++..|+-|++.|..++..|++|.+.|..-|..
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344566777788889999999999999999999999888877764
No 68
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=72.73 E-value=4.9 Score=30.20 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 185 VRKSREKAKIRSRETEEKVKLLVKENERLQKR 216 (256)
Q Consensus 185 aRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~ 216 (256)
||.-=+-=|.+..+++.+..+|+.||..||..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333445667777777777777777777764
No 69
>KOG4010|consensus
Probab=72.32 E-value=7.6 Score=35.41 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|-++||.++..++.||.+||+.|..
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaA 69 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAA 69 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555555555543
No 70
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=72.26 E-value=16 Score=27.07 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..+..+++||+.|+..|+.+++-+..|-.++.
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655554443
No 71
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=72.18 E-value=43 Score=32.14 Aligned_cols=75 Identities=27% Similarity=0.369 Sum_probs=39.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCchhhHHHH
Q psy16107 173 EYKRRRERNNIAVRKSREKAK---IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT---NVGVLPEHLHRELN 246 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK---~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~---q~~~lpe~~~~ev~ 246 (256)
.|+.+|+-=|.=||.-|++.+ .+-.++-.+|.+|..+...+..++..|-+++..|+...- ..|.-+..+-++|.
T Consensus 38 ~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~ 117 (294)
T COG1340 38 ELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIE 117 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Confidence 455555555555555554433 223344455666666666666666666666665554444 33334455555554
Q ss_pred H
Q psy16107 247 K 247 (256)
Q Consensus 247 ~ 247 (256)
+
T Consensus 118 ~ 118 (294)
T COG1340 118 R 118 (294)
T ss_pred H
Confidence 3
No 72
>KOG3119|consensus
Probab=71.97 E-value=17 Score=33.71 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+++||..+..+..--+.-+..+.++..+|..|++|.+.||..+.+
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666788888999999999888887776
No 73
>smart00340 HALZ homeobox associated leucin zipper.
Probab=71.88 E-value=7.7 Score=27.63 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
.-++.|..||.+|+++|++|+
T Consensus 12 rcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 12 RCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566667766655555443
No 74
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.75 E-value=20 Score=33.90 Aligned_cols=40 Identities=35% Similarity=0.421 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
++-++.+.++.++++.|+.|+++|.+++..|+.|...|..
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777788888888888888888888888777754
No 75
>PRK06835 DNA replication protein DnaC; Validated
Probab=70.48 E-value=23 Score=33.71 Aligned_cols=61 Identities=20% Similarity=0.418 Sum_probs=33.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH----HHHHHh
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERL---------------QKRIELLSEELNVL----RSLFTN 233 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~L---------------k~~Ie~L~kEl~~L----K~ll~q 233 (256)
.|-.||.+|.....+-++. .-..-=++.+|+.+...+ ...++.|++++..| +.+|..
T Consensus 12 ~y~~~r~~~~~~~~~r~~e----~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~~ 87 (329)
T PRK06835 12 EYEKRRDKEELELKNRKEE----VYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLVS 87 (329)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777887776665443333 222222333344443333 45566677777666 577788
Q ss_pred cCCC
Q psy16107 234 VGVL 237 (256)
Q Consensus 234 ~~~l 237 (256)
+|+-
T Consensus 88 ~g~~ 91 (329)
T PRK06835 88 NGYP 91 (329)
T ss_pred cCCC
Confidence 7763
No 76
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=70.43 E-value=22 Score=26.38 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..+++.++..|+....-+|+++++|..+++.+.+=+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777777777666665443
No 77
>KOG3335|consensus
Probab=70.40 E-value=17 Score=32.76 Aligned_cols=32 Identities=31% Similarity=0.195 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 189 REKAKIRSRETEEKVKLLVKENERLQKRIELL 220 (256)
Q Consensus 189 ReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L 220 (256)
-+++++...++..+++.|+.+.+++++.+.+|
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444444444444
No 78
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=70.15 E-value=13 Score=34.52 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+..|.+||++||+++.+|..++..+..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~ 94 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQ 94 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888777666665443
No 79
>PRK14127 cell division protein GpsB; Provisional
Probab=69.59 E-value=14 Score=30.48 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+...++.|..||.+|+.++..|+.++..++.-+..
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455667777777777777777777777776554
No 80
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.42 E-value=6.7 Score=28.12 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
+..++.+++++++.+++|++.|
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555555554
No 81
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.92 E-value=21 Score=33.76 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy16107 217 IELLSEELNVLRSLFTN 233 (256)
Q Consensus 217 Ie~L~kEl~~LK~ll~q 233 (256)
+..|+.|+..|..+|..
T Consensus 172 lk~le~E~s~LeE~~~~ 188 (290)
T COG4026 172 LKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444444444444
No 82
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.77 E-value=18 Score=32.64 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+++...++..+-.+|.+++..++.+++.|+.+++.++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667777777777777777777777777666
No 83
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.50 E-value=16 Score=37.17 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 206 LVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|+.+..+|..++++|+.|+..++.++.+
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666665544
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.40 E-value=53 Score=29.09 Aligned_cols=41 Identities=37% Similarity=0.426 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+..+++.++..|+.+.+.++.+|+.+++++..+|..+..
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666666666666666666666666666655
No 85
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=68.29 E-value=20 Score=28.72 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.-+.++.+|+.+|..|..+|+.|+.+++.-+.
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888887776553
No 86
>KOG2391|consensus
Probab=67.42 E-value=55 Score=32.34 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+++++..=..+|+.+.+.|+.++..|++.++.|+.-.
T Consensus 240 t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 240 TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444445555666666666666666655555433
No 87
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=67.20 E-value=30 Score=30.85 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16107 209 ENERLQKRIELLSEELNVL 227 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~L 227 (256)
..++++.+|++|++|+...
T Consensus 154 ~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 154 KREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555443
No 88
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=67.18 E-value=34 Score=32.20 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=35.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHREL 245 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev 245 (256)
.+...+.+.|....|+=.+-|+-+.++++++..|+.|...|...+....+ ..+..+|+....+..+-+..+
T Consensus 179 ~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re--~iF~dvll~rpKCTPDmdV~L 249 (258)
T PF15397_consen 179 PALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPRE--VIFADVLLRRPKCTPDMDVIL 249 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH--HhhHHHhcCCCCCCCCchhhc
Confidence 35566667777777776666666555444444444444443333331111 123344555454444444443
No 89
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=66.92 E-value=16 Score=30.15 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
++..+.+|.+||..|+.+.+.|+..+..
T Consensus 27 LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 27 LKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 90
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=66.82 E-value=20 Score=28.05 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.|..+-..|+.+|..|+.++..+.
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544443
No 91
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.70 E-value=39 Score=25.71 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+..+..+++.+...|+.+|+.+..++..|+..+..
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455667777788888888888888888877654
No 92
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=66.58 E-value=27 Score=31.45 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+++.|+..|..|...|..+++++..|..-+.+
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544443
No 93
>PHA00728 hypothetical protein
Probab=66.38 E-value=7.5 Score=33.49 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
..+++|.+||++|++++++|+.-+
T Consensus 5 teveql~keneelkkkla~leal~ 28 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALM 28 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHH
Confidence 468899999999999888887543
No 94
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.22 E-value=34 Score=29.46 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
....+++++|++|-+..+..++.|+++.+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 95
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=66.14 E-value=11 Score=29.89 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
+.....+..++..++.+|..|..+|..+++|
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4444567788899999999999999888754
No 96
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=66.06 E-value=30 Score=28.06 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
...+++++..+..++++|+..+..+..++..||.
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666666654
No 97
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.93 E-value=20 Score=32.30 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++..+...|++|.+.|+.++++|++.++.++.-+.+
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555544443
No 98
>KOG3156|consensus
Probab=65.76 E-value=28 Score=32.22 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 206 LVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+.|-..|+++.+.|+.|++.+|.-|+.
T Consensus 114 e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 114 ERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888877764
No 99
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.69 E-value=63 Score=28.74 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=44.8
Q ss_pred HHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 173 EYKRRRERNNIAVRKSRE----KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSRe----KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.|.----+||.+--+|=. --|.++......+.++..||.+|..-+..++.|+..|+..+.+
T Consensus 16 ~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 16 NYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 466667788888777642 2344555666677788888888888888888888888877765
No 100
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=65.28 E-value=12 Score=36.92 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
.++++-..|++||++|+.+|+.|+.|..
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555566788888888888888855544
No 101
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.00 E-value=21 Score=37.53 Aligned_cols=55 Identities=33% Similarity=0.364 Sum_probs=38.9
Q ss_pred HHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 178 RERNNIAVRKSREK-AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 178 ReRNNiAaRKSReK-rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+++--+.+-..|.+ -..+...++.+...|+.++++|+++|+.|+.+++.++.-+.
T Consensus 412 ~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 412 EERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666644 34455567778888888888888888888888888776554
No 102
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=64.95 E-value=40 Score=27.50 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+.++|++-.+.|+.+|+.-+++|+.|..
T Consensus 69 ~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555556666665554
No 103
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=64.88 E-value=38 Score=27.64 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
.+.+.|..+|..|+++|..|+.+
T Consensus 64 ~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 64 AELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444444444444444444
No 104
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=64.31 E-value=28 Score=31.77 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=8.0
Q ss_pred CCCCCCHHHHHH
Q psy16107 166 SVDKNTDEYKRR 177 (256)
Q Consensus 166 ~~~k~dd~Yr~R 177 (256)
....-++.||.-
T Consensus 100 ~~e~Pse~YWk~ 111 (200)
T PF07412_consen 100 SSEGPSENYWKE 111 (200)
T ss_dssp -SSSCCHHHHHH
T ss_pred hcCCChHHHHHH
Confidence 444668899974
No 105
>KOG4571|consensus
Probab=64.16 E-value=34 Score=32.90 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=7.8
Q ss_pred CCCCCHHHHHHHHhh
Q psy16107 167 VDKNTDEYKRRRERN 181 (256)
Q Consensus 167 ~~k~dd~Yr~RReRN 181 (256)
......+|+.++.|-
T Consensus 216 ~s~~~~~~~~~~~~r 230 (294)
T KOG4571|consen 216 KSAHPYKTPEKKLRR 230 (294)
T ss_pred ccCCCCCCchHHHHH
Confidence 344445566666543
No 106
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=63.98 E-value=87 Score=26.80 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=41.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Q psy16107 179 ERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHREL 245 (256)
Q Consensus 179 eRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev 245 (256)
.|.+...|-+-.+--.....+..=++..+.+...|+.++..|..|+..|+.-+..+.+|-...-.++
T Consensus 31 ~R~dL~~KV~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeL 97 (126)
T PF07028_consen 31 YRSDLGSKVSQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEEL 97 (126)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3444444443333333333333334444566888888888899999999988888888766544443
No 107
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.89 E-value=40 Score=25.13 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.|..+++.++..++.-.+.|-..|....++++.|+..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555555555555554444
No 108
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.73 E-value=21 Score=36.35 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.+|.++.+.|+.++.+|+..+..|..-|
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666555544
No 109
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=63.72 E-value=6.1 Score=34.83 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
-+.|+.+ -+.|..++.+||-++..|+.|+ .+++.+.
T Consensus 19 LE~ELdE-KE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 19 LESELDE-KENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHH-HHHHHHCH----------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 3444433 3567777888888888888887 5555443
No 110
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=63.60 E-value=53 Score=23.69 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=34.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEH 240 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~ 240 (256)
.|..+|..-..+-+.-|+....+...+-.+++.|..... +..+..++..|..-..+.|.+|-.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d-----~~~~~~~~k~l~~~Wk~iG~vpr~ 75 (77)
T PF03993_consen 13 AFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED-----WKEAAEEIKELQQEWKEIGPVPRK 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHcCCCCcC
Confidence 344444444444444444444444444444444444333 556777777788878887877743
No 111
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=63.56 E-value=15 Score=35.76 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=36.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+--|-|...+.....--.+...-.. .....|.+||++|++++.+|+.++..+..+...
T Consensus 30 ~~~~e~~r~~~~d~~ap~~~~~~~p~~-~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~E 89 (337)
T PRK14872 30 RPVYEKIQDTFVSLCSKFFPKFRQGPS-SHALVLETENFLLKERIALLEERLKSYEEANQT 89 (337)
T ss_pred cHHHHHHHHhhHHHhchhhHHHhCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544442222210011 566788999999999999998888877665543
No 112
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=63.40 E-value=36 Score=29.17 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 211 ERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+|+++++.|++|++.+++.+..
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666665554
No 113
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=63.24 E-value=18 Score=29.47 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
+...+..++++|+.|+++...|+.|+..|++-
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445588899999999999999999988864
No 114
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=63.23 E-value=28 Score=26.39 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 188 SREKAKIRSRETEEKVKLLVKENERLQKRIELL 220 (256)
Q Consensus 188 SReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L 220 (256)
=|+..-.+....-.+..+|..||+.|+++++.+
T Consensus 34 ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 34 ERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444445555555555555555444
No 115
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.69 E-value=29 Score=24.34 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++.....|...-+.|+..-+.|.+|.+.|+..+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666655554
No 116
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=62.53 E-value=44 Score=27.52 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
.++++++-|.=-|..|.++|+.|+.|++
T Consensus 44 k~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 44 KLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666665
No 117
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=62.00 E-value=19 Score=33.95 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
...++.++..|++||++|+.++++|++++...+.+..+.
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999888887764
No 118
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.84 E-value=19 Score=30.50 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 211 ERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+.|+..|++|+.|+..|..-|
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555544444433
No 119
>KOG1962|consensus
Probab=61.72 E-value=14 Score=33.93 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
++.+.|+.|-+....+++.+++++..|+.
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443
No 120
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=61.64 E-value=20 Score=29.70 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
+...|++||.-||-+|+-|-..+.
T Consensus 80 k~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446689999999999888765554
No 121
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=61.48 E-value=42 Score=29.24 Aligned_cols=58 Identities=28% Similarity=0.291 Sum_probs=37.0
Q ss_pred HHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 176 RRRERNNIAVRKSREK--AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 176 ~RReRNNiAaRKSReK--rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+-++.-.-....|+| |+..+.++.+--+.++.++..|..+|+.|+.++..|...+..
T Consensus 55 L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 55 LREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333444444444 333344444445688999999999999999999888855543
No 122
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.31 E-value=18 Score=26.54 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCchhhHH
Q psy16107 206 LVKENERLQKRIELLSEELNVLRSLFTNVGV---LPEHLHRE 244 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~---lpe~~~~e 244 (256)
++.|..+|.++++.|++++..+...|...|. -|..+-..
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~ 43 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEK 43 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHH
Confidence 5678888999999999999999888887655 45554433
No 123
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=61.02 E-value=87 Score=26.27 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=41.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 177 RRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 177 RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-|+||-=-+-|+=.| .|+..++.+...++.-|..|..+|..|+..+...|.-+..
T Consensus 17 ErdR~~WeiERaEmk--arIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 17 ERDRNQWEIERAEMK--ARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355555555444443 4566777788888888889999999999999999988765
No 124
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=60.52 E-value=41 Score=32.82 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
...++.+...|+.++..|+.++..|+.|+..|+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 31 LEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555555555555555555555555544
No 125
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=60.04 E-value=98 Score=28.15 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
...+..++..|...|..|..+|..|+.++.
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 334444445555555555555554444333
No 126
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=59.77 E-value=30 Score=25.51 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.-..-.+...|..+++.|+++...||.+|.|
T Consensus 28 Y~~vL~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 28 YNKVLLDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777777888888888888888876
No 127
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=59.69 E-value=1.1e+02 Score=26.88 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..++..+...|+.++..|+.++..|+..++.+..-+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777666655443
No 128
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=59.46 E-value=18 Score=26.08 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 211 ERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.||++|+.|+.++..|..-|.+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666665554
No 129
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=59.38 E-value=35 Score=25.35 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.+..++..++++.+.|+.+...|+.|+..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555556666666666666666666666554
No 130
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=59.37 E-value=33 Score=35.93 Aligned_cols=42 Identities=36% Similarity=0.394 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 188 SREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 188 SReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+|+....+..+++.++++|..++..|+..|+.++.|+..-..
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~ 114 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEA 114 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566556667778888888999999999888888888765443
No 131
>KOG4797|consensus
Probab=59.29 E-value=23 Score=29.90 Aligned_cols=32 Identities=41% Similarity=0.420 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 184 AVRKSREKAKIRSRETEEKVKLLVKENERLQK 215 (256)
Q Consensus 184 AaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~ 215 (256)
|||--=+-=|.+..+++++...||+||.-||.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45444444445555555555555555555444
No 132
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=59.16 E-value=17 Score=27.25 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+++.+.-.|..+||++|-.|+.||..+|.-...
T Consensus 3 ~ELr~VL~ERNeLK~~v~~leEEL~~yk~~~~~ 35 (60)
T PF11461_consen 3 QELREVLQERNELKARVFLLEEELAYYKSELLP 35 (60)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 356677788899999999999999999976664
No 133
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.11 E-value=56 Score=30.94 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.++.++++++.+||+.|..+++.|+.|+..++.-|
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555544444444333
No 134
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.80 E-value=59 Score=31.90 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCchhhHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRS----LFTNVGVLPEHLHREL 245 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~----ll~q~~~lpe~~~~ev 245 (256)
++.|..+-..|+.+|..|++++..+.. ++.. ||.-.|..|
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---lPN~~~~~v 114 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLS---IPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCccC
Confidence 344555555566666666665554443 4444 555555443
No 135
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=58.68 E-value=47 Score=28.10 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+.+...++.+...|..++..|+.+|+.+..-|.
T Consensus 27 e~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 27 EQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 136
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=58.20 E-value=26 Score=27.98 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
...|.+||+.|+.++..-++|++..
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777666666543
No 137
>PLN02678 seryl-tRNA synthetase
Probab=58.08 E-value=34 Score=34.24 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++.+++.+|.++...|..++..++.++..+-.-|-.
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455566666666666666666666666655544433
No 138
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=57.76 E-value=34 Score=32.65 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLFTNVGVL 237 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~l 237 (256)
++.++.....|+.++..|+.+|.....++..||++
T Consensus 142 lEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlV 176 (302)
T PF09738_consen 142 LERQKRAHDSLREELDELREQLKQRDELIEKHGLV 176 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCee
Confidence 45567778888888889999999999999999993
No 139
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.59 E-value=50 Score=27.84 Aligned_cols=51 Identities=33% Similarity=0.357 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 180 RNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 180 RNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
==|+=++.|+++.. .++.++.+.|+.....|+.+.+.|+.+++.|+..+.+
T Consensus 59 VG~llvk~~k~~~~---~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 59 VGNLLVKVSKEEAV---DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred hhhHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777666554 4566677777777777777777777777777776654
No 140
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=57.26 E-value=7 Score=28.27 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 211 ERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.|+.+|.+|+.|+..||.+=..
T Consensus 14 e~l~vrv~eLEeEV~~LrKINrd 36 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKINRD 36 (48)
T ss_pred chheeeHHHHHHHHHHHHHHhHH
Confidence 57899999999999999986443
No 141
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.23 E-value=52 Score=26.43 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 193 KIRSRETEEKVKLL--VKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 193 K~R~~el~~kv~~L--e~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..|-..++.+++.| ..+...|+.+|.+++.+++.+..-+..
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444455555555 555556666666666666666555543
No 142
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=57.20 E-value=1e+02 Score=27.60 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+...++.+...+-..|..+...+..|++|+..||.-...
T Consensus 174 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 174 GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777788888888888888888888888865443
No 143
>PRK00295 hypothetical protein; Provisional
Probab=57.15 E-value=55 Score=24.56 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
|..+++.++..++.-.+.|-..|....++++.|+..+.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666767666666666666555555555555554433
No 144
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=57.14 E-value=27 Score=29.18 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=29.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKR 216 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~ 216 (256)
+|++-+++ .++.++...++...++.++++|+.+.++++++
T Consensus 95 E~~Rs~~k----e~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~~ 134 (134)
T PF07047_consen 95 EYWRSARK----EAKKEEELQERLEELEERIEELEEQVEKQQER 134 (134)
T ss_pred HHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555444 34556677788889999999999999988753
No 145
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=57.10 E-value=33 Score=26.89 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
.|+.++..|++++.+|.+++..++.-
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~ 29 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAE 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555555555555555555543
No 146
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=57.03 E-value=36 Score=27.23 Aligned_cols=34 Identities=38% Similarity=0.327 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
-++..++++|++|.+++++|+.|...-...+..+
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888877666655543
No 147
>KOG4673|consensus
Probab=56.74 E-value=35 Score=36.80 Aligned_cols=51 Identities=31% Similarity=0.405 Sum_probs=41.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 175 r~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
-.||.-||-++---|+-.-+|...++.+|.-+.+|.+.||.++..|++|+.
T Consensus 390 ~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 390 DLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345556666676777888888888899999999999999999988888875
No 148
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=56.65 E-value=58 Score=28.97 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
....++++.+.|+.+|..|+.+....+.+...|..++..+
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~ra 151 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRA 151 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777777777776654
No 149
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.51 E-value=30 Score=34.73 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
+..+++.|..+...|..++.+++.++
T Consensus 73 l~~e~~~l~~~l~~~e~~~~~~~~~l 98 (429)
T COG0172 73 LIAEVKELKEKLKELEAALDELEAEL 98 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33344444444444444444444433
No 150
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=56.45 E-value=18 Score=34.85 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
...+++|++.|+.||..||.+...|..|...+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~ 193 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTY 193 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 45678889999999999999999999765544
No 151
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=56.14 E-value=48 Score=32.33 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLP 238 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lp 238 (256)
.+++.++..|+.+|..|+.++..+++|+..++..+.+....|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVP 66 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345678889999999999999999999999998888754433
No 152
>PRK11239 hypothetical protein; Provisional
Probab=55.98 E-value=21 Score=32.91 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
..++++|..|+.|.+.|+++|+.|..++
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3366666666666666666666665543
No 153
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=55.96 E-value=85 Score=31.19 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=43.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 179 ERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 179 eRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+++.=++..+|=+.++..+++.-.+|.++...|+.++++...++..++..+.+
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556677778888888888888889999999999999999988887775
No 154
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=55.69 E-value=56 Score=34.56 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
|+|..+|+.++..|+.|......++..|+.|+..||..
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666555566666666666655554
No 155
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=55.42 E-value=25 Score=32.38 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIEL 219 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~ 219 (256)
..++..|+.+...|+.+++.
T Consensus 24 k~kir~le~~l~~Lk~~l~~ 43 (236)
T PF12017_consen 24 KKKIRRLEKELKKLKQKLEK 43 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555543
No 156
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=55.25 E-value=89 Score=30.76 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..++..++.+|.++...|++++..++.++..+-..+=.
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34567777777788888888887777777766555443
No 157
>PRK02119 hypothetical protein; Provisional
Probab=55.17 E-value=60 Score=24.73 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.|..+++.++..++.-.+.|-..|....++++.|+..|.
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665555555555555554444
No 158
>PRK04325 hypothetical protein; Provisional
Probab=55.16 E-value=60 Score=24.76 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.|..+++.++..++.-.+.|-..|....++++.|+..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~ 47 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLR 47 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777766666666666666555555555554443
No 159
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.63 E-value=53 Score=26.83 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+-.++..|+.....|-.+-..|+-|...||..|.+
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555566677777777765
No 160
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=54.28 E-value=11 Score=34.18 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRI 217 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~I 217 (256)
+...++.|..|+..|+.++
T Consensus 130 Lh~~ie~~~eEi~~lk~en 148 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEEN 148 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 161
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.25 E-value=37 Score=32.16 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..++..++..+..++.+++.+|..|+++|+.|++=+..
T Consensus 61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666654443
No 162
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=54.16 E-value=20 Score=30.25 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16107 211 ERLQKRIELLSEELNVLRSLFTNVG 235 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll~q~~ 235 (256)
++|-++|..|+-|...||..+.+.+
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3455555555555555555555543
No 163
>PRK00736 hypothetical protein; Provisional
Probab=54.08 E-value=66 Score=24.14 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.|..+++.++..++.-.+.|-..|....++++.|+..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777766666666666555555555555544433
No 164
>KOG4643|consensus
Probab=54.05 E-value=46 Score=37.13 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 172 DEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
..|...+-|||.+-.--=.-.+.+..-+.+++++--.-+-+|+.+|+.|++|+++|++
T Consensus 162 ~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrq 219 (1195)
T KOG4643|consen 162 KSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQ 219 (1195)
T ss_pred CCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677766553332233333333333333334455566666666666666654
No 165
>PRK04406 hypothetical protein; Provisional
Probab=53.89 E-value=64 Score=24.79 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.|..+++.++..++.-.+.|-..|....++++.|+..|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666665555555555555554444
No 166
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=53.81 E-value=76 Score=32.53 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGV 236 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~ 236 (256)
...+..++..+.+.++.+...|+.+++.+++++..|+..|.+.|-
T Consensus 214 le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 214 LEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444455566666666666667777777777777766666543
No 167
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.42 E-value=91 Score=27.77 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=32.2
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 171 TDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 171 dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
|-..-+.|-..=...+-.+.+.......++.++.+-+.++.+|..+|..|+..+..|+.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQR 145 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44455555555555555556655555666666655544555555555555555544444
No 168
>KOG3335|consensus
Probab=53.42 E-value=33 Score=30.94 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+...+....+|+.....|..+|+++++.++.|...+.
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~ 137 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLN 137 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444455566777777777777777777777765444
No 169
>KOG4657|consensus
Probab=53.37 E-value=47 Score=31.20 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+++.+.-+..|.+.|++.+..|+.|.+.+|.++.+
T Consensus 91 ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~ 125 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQ 125 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44445555566666666666677777777777766
No 170
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=52.87 E-value=18 Score=34.95 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHhhhHHHHHHHH
Q psy16107 166 SVDKNTDEYKRRRERNNIAVRKSRE 190 (256)
Q Consensus 166 ~~~k~dd~Yr~RReRNNiAaRKSRe 190 (256)
.....+++|..-.-+--.|.-.-|.
T Consensus 246 ~e~~~S~efak~~G~lvna~m~lr~ 270 (320)
T TIGR01834 246 AEVFASEENAKVHGKFINALMRLRI 270 (320)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 3445678888777666555554443
No 171
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=52.74 E-value=17 Score=22.68 Aligned_cols=20 Identities=40% Similarity=0.513 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16107 209 ENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK 228 (256)
|..+||.+|..|+++|..-+
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999887644
No 172
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=52.71 E-value=32 Score=26.69 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
..+.++++.+|-..+++|+.+|+.|++=+
T Consensus 37 s~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 37 STDDQALLQELYAKADRLEERIDTLERIL 65 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888887644
No 173
>PRK02793 phi X174 lysis protein; Provisional
Probab=52.70 E-value=70 Score=24.26 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.|..+++.++..++.-.+.|-..|....++++.|+..+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555555555555544444444444333
No 174
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.56 E-value=83 Score=25.27 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=36.6
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Q psy16107 185 VRKSR-EKAKIRSRETEEKVKLLVKENERL--QKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 185 aRKSR-eKrK~R~~el~~kv~~Le~EN~~L--k~~Ie~L~kEl~~LK~ll~q 233 (256)
|+|.+ ++-.++......|+..+|.+-+.| +..+..|+.++..+++-+..
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 33444 444566666788888888888888 88888888888888877765
No 175
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.50 E-value=55 Score=25.51 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 182 NIAVRKSREKAKIR----SRETEEKVKLLVKENERLQKRI 217 (256)
Q Consensus 182 NiAaRKSReKrK~R----~~el~~kv~~Le~EN~~Lk~~I 217 (256)
..|.++=|.+|.+. ...+..++..|..+|..|+.+|
T Consensus 59 e~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 59 ESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666555442 2233444444444444444443
No 176
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=52.19 E-value=1.3e+02 Score=26.29 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcCC
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSYP 253 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~~ 253 (256)
.+++.|.+|...++.+|...-.+++.|...... --.-..+|.+.|+.|.
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~----aR~rL~eVS~~f~~ys 75 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQ----ARQRLAEVSRNFDRYS 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhcccC
Confidence 445556666666666666666666655544443 2233456677777665
No 177
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=52.16 E-value=28 Score=26.72 Aligned_cols=29 Identities=45% Similarity=0.526 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
+.+..+..|.+||-.||-+|--|+..+..
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~ 32 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQK 32 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 45667889999999999999988888773
No 178
>PRK09039 hypothetical protein; Validated
Probab=52.15 E-value=35 Score=32.65 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
|..|..+.+.||+++..|+.+|+.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 179
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=52.11 E-value=36 Score=22.82 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.|..|.+.|+.+-++|+..++.||+
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666666666666666666653
No 180
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=51.87 E-value=1.2e+02 Score=24.03 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+...++..|..+...|+.+|..|+..+..++
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666665544
No 181
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=51.57 E-value=71 Score=33.37 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=47.5
Q ss_pred HHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 177 RRERNNIAVRKSRE--KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 177 RReRNNiAaRKSRe--KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.-+|.+-|..=..+ .-++|..+|..++..|.+|......+|..|+..|..|+..+..
T Consensus 10 q~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 10 QAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34666667664444 4478999999999999999999999999999999999987775
No 182
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=51.24 E-value=7.6 Score=30.87 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+...+..|..+|..|+.+|..|+.++..++.
T Consensus 29 ~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 29 ELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34455666667777777777666666555543
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=51.15 E-value=27 Score=32.15 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
+...++.++.+|.-.++++.-+|++|+
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 184
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=50.90 E-value=75 Score=24.40 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSE 222 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~k 222 (256)
...++.+..+|+.||..|+.++..|..
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444555666677777777777666654
No 185
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.86 E-value=1.2e+02 Score=25.32 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy16107 214 QKRIELLSEE 223 (256)
Q Consensus 214 k~~Ie~L~kE 223 (256)
+.++..|+..
T Consensus 74 ~~el~~l~~r 83 (120)
T PF12325_consen 74 EQELEELQQR 83 (120)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 186
>PRK11637 AmiB activator; Provisional
Probab=50.60 E-value=88 Score=30.30 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
.++.+...|+.+|..+++++..+
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333
No 187
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=50.58 E-value=69 Score=25.23 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
...++..++...+.|.++|..-|+.|+.+|..+-.+
T Consensus 6 qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~L 41 (76)
T PF11544_consen 6 QNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTEL 41 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777777776665544
No 188
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.57 E-value=43 Score=29.14 Aligned_cols=6 Identities=33% Similarity=0.866 Sum_probs=0.0
Q ss_pred hHHHHh
Q psy16107 67 LFTEIL 72 (256)
Q Consensus 67 ~ladlf 72 (256)
.|++||
T Consensus 18 ~~~~li 23 (194)
T PF08614_consen 18 AFAELI 23 (194)
T ss_dssp ------
T ss_pred cccccc
Confidence 344444
No 189
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=50.56 E-value=59 Score=31.88 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++..++++|.++...|.+++..++.++..+-..+-.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4666777788888888888888888777766655544
No 190
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.53 E-value=62 Score=31.08 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+.++|+..+..|..++..++.++..|+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (389)
T PRK03992 14 EEQIRQLELKLRDLEAENEKLERELERLKSELEK 47 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554
No 191
>PRK11239 hypothetical protein; Provisional
Probab=50.37 E-value=29 Score=31.99 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.+...|+.+...|+++|++|+..+..|+..|
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456688888888888888888888777654
No 192
>PHA03155 hypothetical protein; Provisional
Probab=50.34 E-value=21 Score=30.09 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie 218 (256)
.+|..++..|+-||..||++|.
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666665553
No 193
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.03 E-value=93 Score=23.55 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+..+.+.++.+...|+.++..+.+++..++.-|.
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666665554
No 194
>PRK14127 cell division protein GpsB; Provisional
Probab=49.79 E-value=27 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+..+...|+.+|.+|+.+|++++..+...+.
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~ 72 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVSVGAS 72 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 34556677888888888888888888776654
No 195
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=49.79 E-value=43 Score=26.95 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.++.++.+|++++.+|+.+++-|++-+...+
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677888888888888888888776554
No 196
>KOG0995|consensus
Probab=49.79 E-value=1.1e+02 Score=32.09 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHL 241 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~ 241 (256)
.+...+..+++.|..|-++-..+++.|+++.+.||..+...|+-+++.
T Consensus 287 ~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv 334 (581)
T KOG0995|consen 287 SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDV 334 (581)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 344556677788888888888888888888999998888778765544
No 197
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=49.73 E-value=1.1e+02 Score=26.00 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++....+.++..|...|..|..+|+.++..+..++..+..
T Consensus 28 ~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 28 QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566677777777777777777777777777766654
No 198
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.40 E-value=72 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+-.++..|+.....|-.+-..|+-|.+.||..|.+
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555666667777777775
No 199
>PRK09866 hypothetical protein; Provisional
Probab=49.16 E-value=81 Score=33.90 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHh
Q psy16107 183 IAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKH 248 (256)
Q Consensus 183 iAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~ 248 (256)
.|+.|++..+......+.-|..-|..+.+.|+.+|..|+..+..|...=.+ +-+....+|..+
T Consensus 421 sa~~kl~~~a~~~~d~l~~r~~gl~~~~~~L~~~I~~~e~d~~~l~~~q~~---~~~~~~~~~~~~ 483 (741)
T PRK09866 421 SAAHKLLNYAQQAREYLDFRAHGLNVACEQLRQNIHQVEESLQLLQLNQAQ---VSGEIKHEIELA 483 (741)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 466788888888999999999999999999999999999999999876666 334444444333
No 200
>KOG4797|consensus
Probab=49.09 E-value=42 Score=28.40 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
..++|+.|+....+|..++..|++|...||.+.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456788888888888888888888888888653
No 201
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=48.94 E-value=87 Score=23.27 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.+.++..||.-++.+...|..+...++.++
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444
No 202
>PHA03162 hypothetical protein; Provisional
Probab=48.90 E-value=25 Score=30.33 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRI 217 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~I 217 (256)
-..+|..++.+|+-||..||++|
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777666
No 203
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=48.90 E-value=29 Score=38.16 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHh
Q psy16107 160 HRKNGKSVDKNTDEYKRRRER 180 (256)
Q Consensus 160 ~~k~~k~~~k~dd~Yr~RReR 180 (256)
......+.-..+.+.++||+-
T Consensus 566 aRTDL~F~Pl~gSKLAkKRee 586 (982)
T PF03154_consen 566 ARTDLYFVPLPGSKLAKKREE 586 (982)
T ss_pred cccceeeeecCccHHhhhhHH
Confidence 334455566677788877754
No 204
>PHA02047 phage lambda Rz1-like protein
Probab=48.81 E-value=76 Score=26.25 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcC
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSY 252 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~ 252 (256)
+++.|+...+.++.+|..+++.++.|..- -+...+||...|+++
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~k-------ae~~t~Ei~~aL~~n 78 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEAR-------TNTQRQEVDRALDQN 78 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhC
Confidence 44455555555555555555555555443 234445555555443
No 205
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.52 E-value=45 Score=35.29 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcC
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSY 252 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~ 252 (256)
++.++..||+|....+++|+.|.+|+..+..+|.. -.....++|..|..|
T Consensus 450 ~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l~~----~~~~vke~nq~l~~g 499 (758)
T COG4694 450 LEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFLVS----IKPIVKEINQTLLKG 499 (758)
T ss_pred HHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHhh----chhhHHHHHHHHHhh
Confidence 45677789999999999999999999999999865 334567777777654
No 206
>PF14645 Chibby: Chibby family
Probab=48.39 E-value=48 Score=27.42 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
+.++..+|++||.-||.+|+-|-.-+.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLT 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677888888777776655443
No 207
>PRK11546 zraP zinc resistance protein; Provisional
Probab=48.18 E-value=1.5e+02 Score=25.74 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHH
Q psy16107 214 QKRIELLSEELNVLRSLFTNVGVLPEHLHRELNK 247 (256)
Q Consensus 214 k~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~ 247 (256)
.++|..|.+|+..|+.-|.+ .--..+.++.+
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e---~r~~~~~~~~k 118 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDE---LRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34577777777777766665 23334444444
No 208
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=48.16 E-value=52 Score=30.89 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTNVG 235 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~ 235 (256)
++++|+.++..++.++..+++|+..+++.+.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555554433
No 209
>KOG2391|consensus
Probab=48.08 E-value=2.9e+02 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=10.1
Q ss_pred hhhccCccccchhhHHHHhhcC
Q psy16107 54 LQNLIDDSQFNEGLFTEILNQG 75 (256)
Q Consensus 54 lsayId~~~f~d~~ladlf~~~ 75 (256)
|.-+-|.=-|+|+==.+||+--
T Consensus 35 L~P~t~tf~~~Dg~s~~ll~~~ 56 (365)
T KOG2391|consen 35 LRPKTDTFTHNDGRSRLLLQLD 56 (365)
T ss_pred cCcccceEEecCCCccchhhcc
Confidence 3333333345665555555433
No 210
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=47.73 E-value=43 Score=34.16 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSE----ELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~k----El~~LK~ll~q 233 (256)
+++....+.||++|+++|+.|++ |+.+|++.|..
T Consensus 447 ~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~lae 484 (488)
T PF06548_consen 447 QERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQYLAE 484 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666789999999999999998 88899988875
No 211
>KOG1853|consensus
Probab=47.63 E-value=1.4e+02 Score=28.92 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 186 RKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 186 RKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.-..+-.++-+.+|+..+.+|+..|..|..++..|+.|+..+|+-+.
T Consensus 37 ~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 37 NEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777788888888888888888888888887776543
No 212
>KOG2483|consensus
Probab=47.47 E-value=45 Score=30.88 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
.+-.+=..+...-+..+++|+.||..|++++++|+..
T Consensus 105 ~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~ 141 (232)
T KOG2483|consen 105 EHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSLP 141 (232)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4444445555566677788888888888888887743
No 213
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=47.33 E-value=32 Score=25.70 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 212 RLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 212 ~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+|..+|+.|+.|+..++..+.
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544443
No 214
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=47.31 E-value=68 Score=24.61 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..++.....-..+|..|+++|..|.+.+..|-+-+.
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677778888888888888888888776554
No 215
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=47.13 E-value=59 Score=25.18 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
+..++..+++.|+.+...+..++..+++++..|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455556666666666666666666666554
No 216
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=47.08 E-value=93 Score=30.09 Aligned_cols=47 Identities=28% Similarity=0.324 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|+|+|=--...-.+..|..|+..+...+.+|+.|+.|+..+|.-|..
T Consensus 81 k~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 81 KTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444556778899999999999999999999999987764
No 217
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=47.06 E-value=53 Score=22.05 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSE 222 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~k 222 (256)
.+-.+.+.|.+.++.|+.++++|..
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567788888888888888764
No 218
>KOG0996|consensus
Probab=46.98 E-value=66 Score=36.41 Aligned_cols=61 Identities=26% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHh
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERL-----Q-KRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~L-----k-~~Ie~L~kEl~~LK~ll~q 233 (256)
.|..++-.+-+|+-..+.--+.+-.++++.++.|++|.+.| + ++|+.|+..++.+.....+
T Consensus 837 ~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q 903 (1293)
T KOG0996|consen 837 EYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQ 903 (1293)
T ss_pred HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhH
Confidence 35555555555542222111222233444455555555555 3 7777777777777666665
No 219
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=46.79 E-value=81 Score=24.79 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
..+++.-+..|-...+..+.+.+.|+.|.+.|.
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444433
No 220
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=46.52 E-value=38 Score=26.68 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 208 KENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
++|..|+.++...+.|+..|.
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn 25 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLN 25 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 221
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.48 E-value=1.1e+02 Score=30.92 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
..|..+-..|+.+|+.++.++.
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~ 92 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALD 92 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHH
Confidence 3444444555555554444444
No 222
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=46.46 E-value=58 Score=30.58 Aligned_cols=40 Identities=35% Similarity=0.459 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+.+...++++.+++..|...++.++..+++++..++..=.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPL 44 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 3466777888888999999999999999999988875433
No 223
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.15 E-value=88 Score=24.69 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKR 216 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~ 216 (256)
++.++++|+.+|..|..+
T Consensus 23 LQmEieELKEknn~l~~e 40 (79)
T COG3074 23 LQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHhhHhHHH
Confidence 455555555555544433
No 224
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=45.79 E-value=75 Score=31.59 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
+.-+..+++||.+|+.+++.|.+|.
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3334455556666555555555554
No 225
>KOG1760|consensus
Probab=45.72 E-value=71 Score=27.49 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+++..+.|+++.+.|+.+++....+++.||.+|=
T Consensus 85 ~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 85 QLEEKKETLEKEIEELESELESISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777788888887664
No 226
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=45.42 E-value=90 Score=24.79 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16107 210 NERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 210 N~~Lk~~Ie~L~kEl~~LK~ 229 (256)
++.|..+..+|+.|-..+..
T Consensus 48 r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 48 REELERENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555544433
No 227
>PLN02320 seryl-tRNA synthetase
Probab=45.34 E-value=1.4e+02 Score=30.58 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.++.++++.|.++...|+.++..++.++..+-..+
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555666666666666666555555444433
No 228
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=44.96 E-value=1.1e+02 Score=27.18 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+.+++....|..|...|..|+.++..|++-|..
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777777777777777766654
No 229
>KOG4673|consensus
Probab=44.93 E-value=93 Score=33.76 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 182 NIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 182 NiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|-+-+++=++.+.|..+..++...+..|.+.|+.++..|..|+..+|..+.+
T Consensus 713 ~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q 764 (961)
T KOG4673|consen 713 QGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQ 764 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888899999999999999999999999999999999999888877765
No 230
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=44.79 E-value=1.5e+02 Score=25.00 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRI-ELLSEELNVLRSL 230 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~I-e~L~kEl~~LK~l 230 (256)
.......+..|+..+..|+.+. ..++.|+.-|--+
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~l 92 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQSELDDLLVL 92 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4444555556666666666544 4444444444333
No 231
>PHA01750 hypothetical protein
Probab=44.75 E-value=1.1e+02 Score=23.98 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.-.++++..|..|...++.++..|++.+..+|.-+
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34566778888888888888888888888887654
No 232
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=44.38 E-value=91 Score=24.47 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+..+.+.|+++-..|...+..+++++..|+..+.+
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666555443
No 233
>KOG0249|consensus
Probab=43.89 E-value=1.2e+02 Score=33.13 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=28.8
Q ss_pred HHHHHhhhHHHHH---------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 175 KRRRERNNIAVRK---------------SREKAKIRSRETEE-------KVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 175 r~RReRNNiAaRK---------------SReKrK~R~~el~~-------kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
-++|++||.+.++ -|..++++...+.+ .+.++..+.++|..-++.|..|++.|+.
T Consensus 182 arqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 182 ARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3466777776543 34444444443333 3334444555555555556666666654
No 234
>smart00340 HALZ homeobox associated leucin zipper.
Probab=43.80 E-value=65 Score=23.02 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++-.++.|++--+.|..+-..|++|++.||.+-..
T Consensus 3 TEvdCe~LKrcce~LteeNrRL~ke~~eLralk~~ 37 (44)
T smart00340 3 TEVDCELLKRCCESLTEENRRLQKEVQELRALKLS 37 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45567889999999999999999999999986543
No 235
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.62 E-value=75 Score=30.12 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.++..++..|+.|..+|.+++..|++|...|...+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 236
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.55 E-value=96 Score=24.37 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 183 IAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 183 iAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+-+.++.+.... .+..+.+.|+.+...|..++..+.+++..|+.-+.
T Consensus 55 vfv~~~~~ea~~---~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 55 VLVKQEKEEART---ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554433 34556666777777777777777777776665554
No 237
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=43.26 E-value=1.6e+02 Score=23.20 Aligned_cols=18 Identities=39% Similarity=0.300 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIEL 219 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~ 219 (256)
+.+.|+.||.-|...|..
T Consensus 45 E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 45 ENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 238
>PHA02562 46 endonuclease subunit; Provisional
Probab=43.00 E-value=1.4e+02 Score=29.31 Aligned_cols=6 Identities=33% Similarity=0.838 Sum_probs=2.8
Q ss_pred hHHHHh
Q psy16107 67 LFTEIL 72 (256)
Q Consensus 67 ~ladlf 72 (256)
+|.++|
T Consensus 118 ~i~~~~ 123 (562)
T PHA02562 118 YFEQML 123 (562)
T ss_pred HHHHHH
Confidence 444444
No 239
>KOG0982|consensus
Probab=42.95 E-value=1.1e+02 Score=31.39 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 183 IAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSE 222 (256)
Q Consensus 183 iAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~k 222 (256)
+-+|+-|+|.-+.+. ++.++.+|+.||.+||..|.-|+.
T Consensus 287 il~k~eReasle~En-lqmr~qqleeentelRs~~arlks 325 (502)
T KOG0982|consen 287 ILIKKEREASLEKEN-LQMRDQQLEEENTELRSLIARLKS 325 (502)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666555443 345666666666666665554443
No 240
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.69 E-value=42 Score=35.77 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhcCCCCchhhHHHHHhhh
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIEL-----------------LSEELNVLRSLFTNVGVLPEHLHRELNKHFD 250 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~-----------------L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~ 250 (256)
|.|+..+-+...+||.||-.|.++|.. |+.|+..|+..+....-|-+....++...|.
T Consensus 89 K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALe 163 (717)
T PF09730_consen 89 KFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALE 163 (717)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556677888888887776654 4455555555555544455555555555544
No 241
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=42.50 E-value=24 Score=36.00 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy16107 216 RIELLSEELNVLR 228 (256)
Q Consensus 216 ~Ie~L~kEl~~LK 228 (256)
+|++|++||+.||
T Consensus 32 kie~L~kql~~Lk 44 (489)
T PF11853_consen 32 KIEALKKQLEELK 44 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 242
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.25 E-value=82 Score=24.71 Aligned_cols=33 Identities=39% Similarity=0.494 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
|...+..+++.|+++-..++.++..|+..+..+
T Consensus 95 r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 95 RLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677788888888888888888877653
No 243
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.10 E-value=82 Score=32.21 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy16107 204 KLLVKENERLQ 214 (256)
Q Consensus 204 ~~Le~EN~~Lk 214 (256)
.+||++.+.||
T Consensus 79 sELEKqLaaLr 89 (475)
T PRK13729 79 AQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 244
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=42.00 E-value=86 Score=25.95 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhh
Q psy16107 189 REKAKIRSRETEEKVKLLVKENERLQKR-------IELLSEELNVLRSLFTNVGVLPEHLHRELNKHF 249 (256)
Q Consensus 189 ReKrK~R~~el~~kv~~Le~EN~~Lk~~-------Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l 249 (256)
|+.|-.+...+.++|..+..-.+.|-.+ |..++..+..|+.-|.+ +-+....-+.++|
T Consensus 35 rD~r~~qlrqllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~---~e~~~~~l~~k~f 99 (101)
T PF12308_consen 35 RDARSRQLRQLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQ---VEDDRKSLSAKSF 99 (101)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH---HhcCHHHhhhhhh
Confidence 3333444455666777777666666543 67777778888888887 4444444444444
No 245
>COG4420 Predicted membrane protein [Function unknown]
Probab=41.97 E-value=1e+02 Score=28.04 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.-.+.+...++++..|-.+.+.|+..+..+..|++.+|+++.+
T Consensus 123 ~~d~qvnlkaE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~ 166 (191)
T COG4420 123 ELDYQVNLKAEQEVAALHEKLDELRLDLGYVRDELDDLRELLAE 166 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHH
Confidence 33456677788888889999999999999999999999999988
No 246
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=41.94 E-value=69 Score=34.82 Aligned_cols=32 Identities=41% Similarity=0.466 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+.|...|++|.+.|+.++.|.+.|+.+|..
T Consensus 449 ~~e~lq~kneellk~~e~q~~Enk~~~~~~~e 480 (861)
T PF15254_consen 449 SQELLQSKNEELLKVIENQKEENKRLRKMFQE 480 (861)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999988775
No 247
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=41.86 E-value=38 Score=36.03 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcC
Q psy16107 197 RETEEKVKLLVK-ENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSY 252 (256)
Q Consensus 197 ~el~~kv~~Le~-EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~ 252 (256)
.-+..++.+|.+ |..+|+++.++|++|++.|+.+|.+...+-.-+..|+...-+.|
T Consensus 412 aIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~ 468 (735)
T TIGR01062 412 AILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADATKY 468 (735)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 335567777765 77889999999999999999999873333333444555444444
No 248
>KOG3433|consensus
Probab=41.75 E-value=1.1e+02 Score=28.08 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 185 VRKSREKAKIRSRETEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 185 aRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie 218 (256)
.++.|+.+.+|..++..+..-|.++.+.||.+++
T Consensus 107 ~K~~~e~tEer~~el~kklnslkk~~e~lr~el~ 140 (203)
T KOG3433|consen 107 RKAGREETEERTDELTKKLNSLKKILESLRWELA 140 (203)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444444444444444433
No 249
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=41.64 E-value=8.7 Score=35.81 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
++..+..-|+.|..||++|++++.+|+.|...|
T Consensus 130 ~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 130 KIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788999999999999999999999988
No 250
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=41.47 E-value=1.7e+02 Score=26.21 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.||....+...++..|+..=..|-.++-+++..+..|+.-+.+
T Consensus 165 ~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~ 207 (221)
T PF05700_consen 165 ERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQ 207 (221)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777788888888888888888888888766554
No 251
>KOG1962|consensus
Probab=41.43 E-value=63 Score=29.80 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16107 207 VKENERLQKRIELLSEELN 225 (256)
Q Consensus 207 e~EN~~Lk~~Ie~L~kEl~ 225 (256)
++++..|+++++.+.+|.+
T Consensus 178 ~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred HHHHHHHHHHHHHcccHHH
Confidence 3333333333333333333
No 252
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=41.29 E-value=1.1e+02 Score=25.63 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16107 211 ERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~l 230 (256)
..|+.+|+.|++++..|.+-
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 86 DELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777766654
No 253
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.99 E-value=1.1e+02 Score=28.50 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
.|+.+...|..+++.|++++.
T Consensus 107 ~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 254
>KOG3433|consensus
Probab=40.98 E-value=1.1e+02 Score=28.15 Aligned_cols=45 Identities=33% Similarity=0.351 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 185 VRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 185 aRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+..|=+++|.-..+++++..+|+.+...|+..++.|+.|+..++.
T Consensus 100 l~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 100 LGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556777777777888888888888888888888888776653
No 255
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.96 E-value=1.2e+02 Score=27.48 Aligned_cols=36 Identities=39% Similarity=0.460 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++++|+.....|+++++..|++|..++..+-+.+..
T Consensus 122 el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke 157 (181)
T COG4345 122 ELEEKLADAMEEVERIEKTIEELVSELESLANKLKE 157 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777776666555443
No 256
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=40.90 E-value=1.5e+02 Score=32.36 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHH
Q psy16107 181 NNIAVRKSREKAK 193 (256)
Q Consensus 181 NNiAaRKSReKrK 193 (256)
=.+.-.+-|++.|
T Consensus 403 Lrilnqqlreqe~ 415 (861)
T PF15254_consen 403 LRILNQQLREQEK 415 (861)
T ss_pred HHHHHHHHHHHHh
Confidence 3344455555433
No 257
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=40.84 E-value=1.6e+02 Score=28.40 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 172 DEYKRRRERNNIAVRKSREKAKIRSR---ETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSReKrK~R~~---el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
++...+|.-+|..|+.-|++|...+. ++-+++..|..+-..+-.+|.+|+.+...
T Consensus 23 ~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e 80 (294)
T COG1340 23 EELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE 80 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888777765544 34445555556666666666665555443
No 258
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=40.82 E-value=68 Score=27.11 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
..+|..++.+|+-||..||++|.+=.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 46788899999999999999987643
No 259
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.76 E-value=38 Score=24.13 Aligned_cols=12 Identities=50% Similarity=0.531 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERL 213 (256)
Q Consensus 202 kv~~Le~EN~~L 213 (256)
+++++++|++.|
T Consensus 56 ~l~~le~e~~~l 67 (68)
T PF06305_consen 56 ELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHhc
Confidence 444455555444
No 260
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.61 E-value=79 Score=27.88 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=33.0
Q ss_pred CCCCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 163 NGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLV------KENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 163 ~~k~~~k~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le------~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
........+.....++.+-+.. .+.-++-+.+..+++.++..+. .+...|-+++++|++++..|+.-|..
T Consensus 53 sn~YWsFps~~~~~~~~~~~~l-~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 53 SNYYWSFPSQAKQKRQNKLEKL-QKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred eeEEEecChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555544443332 2333333334444444444332 34445556666666666666655553
No 261
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=40.54 E-value=1.7e+02 Score=23.91 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 208 KENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.|...|+.+|..|++.+..|+.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888888888888877753
No 262
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=40.34 E-value=54 Score=25.17 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhcCCCCchh
Q psy16107 221 SEELNVLRSLFTNVGVLPEHL 241 (256)
Q Consensus 221 ~kEl~~LK~ll~q~~~lpe~~ 241 (256)
..-+..++.++.+.|+-++++
T Consensus 23 ~~~~~~i~~~~~~~Gis~~el 43 (93)
T PF00816_consen 23 EEAIAEIRELMAEYGISPEEL 43 (93)
T ss_dssp HHHHHHHHHHHHHTT--HHHC
T ss_pred HHHHHHHHHHHHHhCCCHHHh
Confidence 344788899999999866665
No 263
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=40.18 E-value=95 Score=27.85 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+.+++..+.....|..+|..|+.+|...|.-+..
T Consensus 188 aE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~ 222 (237)
T PF00261_consen 188 AENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKK 222 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666665554
No 264
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=40.07 E-value=1.7e+02 Score=24.88 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
--.++|.-||..|..+|++-..|+..||.....
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999977654
No 265
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.96 E-value=1.2e+02 Score=27.20 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.-+.+..++.+..+.+.+|+.++.++..|.+...
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445668889999999999999999988887654
No 266
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.93 E-value=95 Score=24.71 Aligned_cols=46 Identities=30% Similarity=0.350 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 183 IAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 183 iAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+-++++++..+. .+..+.+.++.....|..+++.|++++..+..-|
T Consensus 59 vlv~~~~~e~~~---~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 59 LLVKTDKEEAIQ---ELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred hhheecHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554433322 2334444455555555555555555554444433
No 267
>PF14645 Chibby: Chibby family
Probab=39.84 E-value=78 Score=26.20 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+...|.++|..|+.+...|+-+++.|-+||..
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~elLlDMLte 103 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIELLLDMLTE 103 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777778777777777777777777764
No 268
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.78 E-value=91 Score=26.31 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
+.=+.|..-++.+++.|++.-..|+.+++.|+.+|..
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667778888888888888888888777653
No 269
>KOG0483|consensus
Probab=39.71 E-value=41 Score=30.42 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+...++.|..+|..|..++.+|..++..++...
T Consensus 117 Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~ 149 (198)
T KOG0483|consen 117 LKRQLESLRSENDRLQSEVQELVAELSSLKREM 149 (198)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 344455555555555555555555555444433
No 270
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=39.60 E-value=1.1e+02 Score=23.06 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEH 240 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~ 240 (256)
++..++..|..+-..+..+|..|+.++..+...+.....++++
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4566778888888888888888888887777666554445554
No 271
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=39.47 E-value=1.6e+02 Score=22.02 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
+.+.+-..|+.+...|+.++++|+
T Consensus 36 eaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 36 EAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444455555555554443
No 272
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=39.33 E-value=97 Score=28.57 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+..||..|+.+|..|++++..||+.+
T Consensus 16 ~~~e~~~Lk~kir~le~~l~~Lk~~l 41 (236)
T PF12017_consen 16 LKIENKKLKKKIRRLEKELKKLKQKL 41 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544
No 273
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=39.26 E-value=29 Score=32.98 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
.+.++-+++.+.||.-..+|.++|+.|+.+-
T Consensus 3 rQ~qEDEqKtR~LEesI~RLEkEIe~LE~~e 33 (278)
T PF03285_consen 3 RQMQEDEQKTRSLEESIHRLEKEIEALENGE 33 (278)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3456678899999999999999999998863
No 274
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=39.18 E-value=94 Score=33.03 Aligned_cols=54 Identities=11% Similarity=0.160 Sum_probs=34.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcC
Q psy16107 199 TEEKVKLLV-KENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSY 252 (256)
Q Consensus 199 l~~kv~~Le-~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~ 252 (256)
+..++..|. .|..+|+.++++|++|++.|+.+|.+...+-.-+..|+..+-..|
T Consensus 417 l~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kf 471 (738)
T TIGR01061 417 VSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQF 471 (738)
T ss_pred HhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 444555555 455688999999999999999988763323333444444444444
No 275
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=39.17 E-value=2e+02 Score=24.81 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++.-+..+..+++.++.+++.+++++..|+..+..
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666677777777777777777777777665553
No 276
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=39.11 E-value=1.8e+02 Score=24.38 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.-.+|+.++..|+-|+..++.-...|.+.|.+|...|.+
T Consensus 26 ERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777766
No 277
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=39.10 E-value=1e+02 Score=32.92 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=35.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcC
Q psy16107 199 TEEKVKLLV-KENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSY 252 (256)
Q Consensus 199 l~~kv~~Le-~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~ 252 (256)
+..++..|. .|..+|+.++++|++|++.|+.+|.+...+-.-+..|+..+-..|
T Consensus 417 l~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkf 471 (800)
T TIGR01063 417 LDMRLQRLTGLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQF 471 (800)
T ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHh
Confidence 344555565 457789999999999999999999873333333444444444444
No 278
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=38.99 E-value=2.6e+02 Score=28.54 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 165 KSVDKNTDEYKRRRERNNIAVRKSR-EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 165 k~~~k~dd~Yr~RReRNNiAaRKSR-eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
......+++|.+|=. ++.-=++.. +|-+.+...+.+|..++..+-..|+-+++.|.+....|+.++.+
T Consensus 424 L~~Ik~SprYvdrl~-~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 424 LFMIKSSPRYVDRLV-ESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHhcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344556888887532 222222222 44455555667777777777777777888777777777776654
No 279
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=38.98 E-value=82 Score=27.29 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
+++.|+.|..+++.+|++-+..|+.|
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL 27 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQEL 27 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766655555544
No 280
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=38.98 E-value=70 Score=33.25 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
..++.+..++.|+++|..|..+|.+++.||..++.-
T Consensus 371 qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 371 QINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677788899999999999999999999988864
No 281
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=38.96 E-value=1e+02 Score=23.71 Aligned_cols=32 Identities=31% Similarity=0.283 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+..++..+++++.+|+.+-+.|+-|+..|..
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44455777777777877777777777777764
No 282
>KOG3584|consensus
Probab=38.95 E-value=78 Score=30.90 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKEN-ERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN-~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|.|+-|-+|++|...++..-++|. ..|+.+|.-|+.+.+.|-+-|..
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKt 337 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKT 337 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHH
Confidence 445556666666666666666664 45888999999998888777665
No 283
>KOG4005|consensus
Probab=38.82 E-value=1.2e+02 Score=28.89 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+..+++.+...|..+-+.|..|.+.||.
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555543
No 284
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=38.63 E-value=40 Score=34.43 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
++++|++|.++|++++..|++.++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 4555555555555555444444433
No 285
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.51 E-value=1.2e+02 Score=26.49 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+-+++..++..|+.+...|..+|..+-++|...+..|..
T Consensus 22 ~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~ 61 (188)
T PF10018_consen 22 QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRT 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888888888888888877766
No 286
>PHA03155 hypothetical protein; Provisional
Probab=38.50 E-value=45 Score=28.13 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16107 210 NERLQKRIELLSEELNVLRSLFTNVGV 236 (256)
Q Consensus 210 N~~Lk~~Ie~L~kEl~~LK~ll~q~~~ 236 (256)
-++|.++|..|+-|...||..|.+++-
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~ 36 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGN 36 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 467888888899999999999988664
No 287
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.35 E-value=65 Score=28.72 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++.+|..+...|..+++.|..|...||.+-..
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~R 44 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKR 44 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888776544
No 288
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=38.26 E-value=62 Score=32.48 Aligned_cols=6 Identities=0% Similarity=0.562 Sum_probs=2.4
Q ss_pred hhhccC
Q psy16107 54 LQNLID 59 (256)
Q Consensus 54 lsayId 59 (256)
++++++
T Consensus 149 v~sfl~ 154 (429)
T PRK00247 149 VESFLQ 154 (429)
T ss_pred HHHHHh
Confidence 444433
No 289
>KOG2264|consensus
Probab=38.24 E-value=1.1e+02 Score=32.59 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSE 222 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~k 222 (256)
+|..|.+++..+|++|++
T Consensus 104 el~seI~~~n~kiEelk~ 121 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKR 121 (907)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344444444444443333
No 290
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=38.13 E-value=2.4e+02 Score=23.58 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+...+..|..+|..+-.+|..|+.+|..++.-+-
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666667777777777777777766655443
No 291
>PRK00846 hypothetical protein; Provisional
Probab=37.92 E-value=1.3e+02 Score=23.56 Aligned_cols=35 Identities=11% Similarity=-0.021 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
|..+++.++...+.-.+.|-..|....++++.|+.
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ 48 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAE 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333333333333333
No 292
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=37.85 E-value=1.4e+02 Score=28.69 Aligned_cols=36 Identities=39% Similarity=0.510 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+...++.+.++|..+...++.+|+.|+++++.|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 15 EQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455667777888888888999999999999988876
No 293
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=37.68 E-value=1.2e+02 Score=26.93 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKEN-ERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN-~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..|-.....+..++..+..++ ......|.+|+.|.+.||++|.
T Consensus 134 ~~kI~EM~~vM~~ai~~de~~~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 134 AEKICEMAAVMRKAIELDEENSQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred HHHHHHHHHHHHHHHhcchhhhHhHHHHHHHHHHHHHHHHHHHh
Confidence 333334444445555555554 5778889999999999999885
No 294
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.54 E-value=94 Score=29.49 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q psy16107 188 SREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN-VLRSLFTN 233 (256)
Q Consensus 188 SReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~-~LK~ll~q 233 (256)
.++..+.+..+++.+.++|+.+.+.|+.+|.+.+.-+. .+|.|...
T Consensus 67 k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 67 KIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555555555555555555555444443 45554443
No 295
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=37.52 E-value=56 Score=23.28 Aligned_cols=11 Identities=45% Similarity=0.818 Sum_probs=5.9
Q ss_pred hHHHHHhhhcC
Q psy16107 242 HRELNKHFDSY 252 (256)
Q Consensus 242 ~~ev~~~l~~~ 252 (256)
.+-||+.+|+|
T Consensus 27 l~ninksidq~ 37 (46)
T PF08181_consen 27 LRNINKSIDQY 37 (46)
T ss_pred HHHHHHhHHHH
Confidence 34456666555
No 296
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=37.48 E-value=12 Score=33.52 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
+.-+.++.+|+++.++.+.+|.+.++|+..||..+...
T Consensus 7 q~Qq~~i~ELk~~~aeq~~ql~eqkREl~lLk~yirAl 44 (179)
T PF08941_consen 7 QQQQTKIAELKKEQAEQQQQLSEQKRELELLKEYIRAL 44 (179)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467889999999999999999999999999988764
No 297
>PRK10722 hypothetical protein; Provisional
Probab=37.43 E-value=1.5e+02 Score=28.05 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=46.0
Q ss_pred HHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 172 DEYKRRRER----NNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 172 d~Yr~RReR----NNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.-|+.-|++ =+.|.-|.|=+|-+.+. ..+++.|.+++.+|+.+++.+++.|+.|..|=.|
T Consensus 145 PL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~s--D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERq 208 (247)
T PRK10722 145 PLYQLWRDGQALQLALAEERQRYQKLQQSS--DSELDALRQQQQRLQYQLELTTRKLENLTDIERQ 208 (247)
T ss_pred HHHHHHHHhhHHHHhHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666 35677777766665544 4678899999999999999999999999988766
No 298
>PRK00846 hypothetical protein; Provisional
Probab=37.29 E-value=1.6e+02 Score=22.99 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
...++.++..||...+-...-|+.|.+.+....
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq 40 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADAR 40 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 299
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=37.14 E-value=36 Score=25.98 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKR 216 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~ 216 (256)
++.+.+..|-.||..||.-
T Consensus 3 e~~~~l~~LL~EN~~LKea 21 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEA 21 (68)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHH
Confidence 4555666666666666643
No 300
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=37.09 E-value=1.5e+02 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+..+++.|++.-..|...+..|++++..+...+.
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566666666666666666666655544
No 301
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.05 E-value=1.2e+02 Score=23.93 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
+..+++.|++.-..|..++..|+.++.
T Consensus 75 le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 75 IELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 302
>PRK05560 DNA gyrase subunit A; Validated
Probab=36.81 E-value=1.1e+02 Score=32.65 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=37.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcCC
Q psy16107 199 TEEKVKLLV-KENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSYP 253 (256)
Q Consensus 199 l~~kv~~Le-~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~~ 253 (256)
+..++..|. .|..+|+.++++|++|++.|+.+|.....+-.-+..|+..+-..|.
T Consensus 420 L~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg 475 (805)
T PRK05560 420 LDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFG 475 (805)
T ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 345556666 4678899999999999999999998733333344445554444443
No 303
>PRK15396 murein lipoprotein; Provisional
Probab=36.77 E-value=79 Score=24.75 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++++|..+...|..+|.+|..++..+|.-...
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888888888888777765554
No 304
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=36.77 E-value=1.1e+02 Score=28.69 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 211 ERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+..+++.|++|...||.+|.-
T Consensus 86 ~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 86 EQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 44556677888999999998874
No 305
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=36.69 E-value=83 Score=23.35 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
-+++|+..||+.....+++....+.++..++
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677777777777777777777777766543
No 306
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.67 E-value=2.8e+02 Score=28.18 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=52.5
Q ss_pred CHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16107 171 TDEYKRRRERNNIAVRKSR-EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVG 235 (256)
Q Consensus 171 dd~Yr~RReRNNiAaRKSR-eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~ 235 (256)
.+.|+-++.|+.+.--.+. +.-..+...+...+..|.....+-+..|.+|+.....+|.-++..+
T Consensus 95 ~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~ 160 (569)
T PRK04778 95 NDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANR 160 (569)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567778888877777766 6677777788888888888888889999999999999998888663
No 307
>KOG0977|consensus
Probab=36.64 E-value=1.2e+02 Score=31.46 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.|+.|+..|++++..|..+|..+|.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444444444444444444444443
No 308
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.63 E-value=2.4e+02 Score=23.15 Aligned_cols=34 Identities=35% Similarity=0.396 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
...+-..|+.+...++.+|+.|..+...|-+.|-
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444456777777777777777777666655543
No 309
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=36.48 E-value=1.5e+02 Score=27.18 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..-|.++|....+....|..+.+.|.+|...||++.+
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl 139 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCL 139 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4457788888888888888889999999999998765
No 310
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=36.35 E-value=2.8e+02 Score=23.84 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
|.-...++.++..+..+...|...+..|..|
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444333333333333333333
No 311
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.27 E-value=1.4e+02 Score=22.17 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
....+.-+++|-....+...+|..|++++..|+.-+..
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777888888887777777766
No 312
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.19 E-value=81 Score=32.82 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
++...+..++..|+.++..|+.++..|+.+|..
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446777777777888888777777777765
No 313
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=36.15 E-value=1.2e+02 Score=25.84 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLH 242 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~ 242 (256)
++-+.+.+..++++++...-+..+|.++...|+-++.+.
T Consensus 38 ~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis~~eL~ 76 (135)
T PRK10947 38 NERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 76 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 344555666677777777779999999999999887774
No 314
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=36.12 E-value=41 Score=29.72 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+-+|..-|+.++ .|.+.|+.++..|+.|+..||.-+
T Consensus 12 AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 12 AIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554 556677777778888888887655
No 315
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.07 E-value=1.7e+02 Score=28.35 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTNVG 235 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q~~ 235 (256)
....|..+++.++++++.++.++..+|
T Consensus 274 k~~~~~~q~~~~~k~~~~~~~~~~~~~ 300 (406)
T PF02388_consen 274 KLKELEEQLASLEKRIEEAEELIAEYG 300 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455667777777777777777766543
No 316
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=35.96 E-value=1e+02 Score=24.11 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.++.+|-.|.+.|..+|..|++.+..|..-+
T Consensus 54 ~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 54 KKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777777666444
No 317
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.92 E-value=91 Score=30.24 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
..++...|..|...|++++.+++.++..||.-+...
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 344556677888888888888888888888877664
No 318
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=35.91 E-value=1.3e+02 Score=34.09 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEH 240 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~ 240 (256)
..|..|..+++.++.+|+.+...|..++..|+..+..|..-+.. +|..
T Consensus 738 ~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~---~Ps~ 785 (1353)
T TIGR02680 738 RARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAG---APSD 785 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCc
Confidence 34566778899999999999999999999999999999988888 7875
No 319
>KOG0250|consensus
Probab=35.68 E-value=2.4e+02 Score=31.81 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+.+.|++|++.|+..+..|..|...++.-+.
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444333
No 320
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.59 E-value=1.3e+02 Score=31.32 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCC
Q psy16107 133 NGAPTNFNTPLAHSS 147 (256)
Q Consensus 133 ~~~~~~~~~~~~ps~ 147 (256)
-|..+||.- ..|.+
T Consensus 102 ~G~S~pFqf-~~~~p 115 (546)
T PF07888_consen 102 RGASTPFQF-RAPKP 115 (546)
T ss_pred EEecCCccc-CCCCc
Confidence 466677764 44443
No 321
>KOG0977|consensus
Probab=35.58 E-value=2.2e+02 Score=29.76 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
...++..|+.|..-++++|..|+.|+..||.
T Consensus 146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~ 176 (546)
T KOG0977|consen 146 YLSRLSELEAEINTLKRRIKALEDELKRLKA 176 (546)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544443
No 322
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=35.37 E-value=22 Score=30.16 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCccccchhhhccCccccchhhHHHHh
Q psy16107 46 NTPEISLDLQNLIDDSQFNEGLFTEIL 72 (256)
Q Consensus 46 ~~~E~SiDlsayId~~~f~d~~ladlf 72 (256)
.-+||.|||..||-|+.+.|.-|-.+-
T Consensus 6 iLNdIhIdImDyI~Pa~~~~~~FR~mW 32 (129)
T PF14806_consen 6 ILNDIHIDIMDYIKPATCSDEEFRSMW 32 (129)
T ss_pred EcccceEcHHHhcCcccCCHHHHHHHH
Confidence 348999999999999987776665554
No 323
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=35.31 E-value=2.8e+02 Score=24.80 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=26.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 174 YKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 174 Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
|+..+..-...++.-=.+|.+-..+.+.+.++++.+...|+.+|...++|
T Consensus 126 ~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 126 YREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444433333333333344444445555666777777777777766654
No 324
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=35.16 E-value=42 Score=26.08 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
.+-++++++|-..+++|..+|+.|++=+
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 38 EEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677888899999988888887644
No 325
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.00 E-value=1.5e+02 Score=22.16 Aligned_cols=26 Identities=38% Similarity=0.427 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSE 222 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~k 222 (256)
.++.+++..|+.|.++++..|..-..
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554333
No 326
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.93 E-value=2.3e+02 Score=26.69 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=13.0
Q ss_pred ccchhhhccCcc--ccchhhHHHHhhc
Q psy16107 50 ISLDLQNLIDDS--QFNEGLFTEILNQ 74 (256)
Q Consensus 50 ~SiDlsayId~~--~f~d~~ladlf~~ 74 (256)
.+|-|+.|++.- .|.|++--++.+.
T Consensus 12 ~~isL~~FL~~~~I~F~dDl~~~~~~~ 38 (325)
T PF08317_consen 12 EPISLQDFLNMTGIRFYDDLEMELTTT 38 (325)
T ss_pred CCcCHHHHHHHhCceeCCCcccccccc
Confidence 356677777654 3555444344433
No 327
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=34.61 E-value=2.8e+02 Score=24.41 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.|+.++..|+.++..|+.++..|+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~ 148 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKN 148 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 328
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=34.56 E-value=2.1e+02 Score=26.15 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..+..|+.....|..+|.+++.....|+.-..
T Consensus 113 ~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 113 EQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544433
No 329
>KOG4643|consensus
Probab=34.49 E-value=1.1e+02 Score=34.49 Aligned_cols=44 Identities=30% Similarity=0.280 Sum_probs=29.9
Q ss_pred HhhhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 179 ERNNIAVRKSREKA------------KIRSRETEEKVKLLVKENERLQKRIELLSE 222 (256)
Q Consensus 179 eRNNiAaRKSReKr------------K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~k 222 (256)
+-++.++++.-.|. .++-.+++..+-.||+||+.|-.+|..|..
T Consensus 503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34566676665443 344455666777788888888888888776
No 330
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.41 E-value=93 Score=26.28 Aligned_cols=25 Identities=48% Similarity=0.539 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+|..+...|+.+|+.|+..+..|+.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677888888888888888888877
No 331
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.21 E-value=1.4e+02 Score=23.52 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
+.+++..+...++.|..+-++|+.|
T Consensus 37 l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 37 LSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444
No 332
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=34.13 E-value=95 Score=29.60 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKENER-------LQKRIELLSE 222 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN~~-------Lk~~Ie~L~k 222 (256)
-||+-+.-...+++.++++|.++-.+ ||++|..|-+
T Consensus 44 as~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~ 86 (277)
T PF15030_consen 44 ASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQ 86 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHH
Confidence 46766666777788888888776554 4555554443
No 333
>KOG0250|consensus
Probab=34.11 E-value=2.6e+02 Score=31.47 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+..+..+...+++.|++|+..|..++.+
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~ 419 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINS 419 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555554444
No 334
>PRK09343 prefoldin subunit beta; Provisional
Probab=33.86 E-value=1.3e+02 Score=24.59 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
.+++.|++.-..|+.++..++..+
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 335
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=33.75 E-value=2.4e+02 Score=22.28 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
....+...+...|+.+|+.|+.++..+...+..
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777766655
No 336
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=33.71 E-value=2e+02 Score=25.06 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
--+....++..++..|+.+|..|..++..+...+
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3444555666777777777777775555544433
No 337
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.68 E-value=1.5e+02 Score=31.62 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCchhhHHHHHhhh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV-------GVLPEHLHRELNKHFD 250 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~-------~~lpe~~~~ev~~~l~ 250 (256)
.++++.+..+...|+..|+++++.++..+..+.+. ..|++.....|..+|.
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~ 695 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILK 695 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHH
Confidence 34444444445555555555555555444332211 1266777777766664
No 338
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=33.46 E-value=1.1e+02 Score=23.78 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.|++.-..|..++..++.++..+...+
T Consensus 88 ~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 88 ELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 339
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.28 E-value=2.4e+02 Score=28.47 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 185 VRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 185 aRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..++....+.+...++..+..|+.++..++.+|.+...+++.++.-+..
T Consensus 50 ~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 50 LEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 3344455666666777777778887777777777666666666555443
No 340
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=33.25 E-value=1.2e+02 Score=29.32 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 189 REKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 189 ReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|+.-+..=..+.+.|..|...|+.||++|...+.-++-||+-+..
T Consensus 73 ~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~kk 117 (389)
T PF06216_consen 73 RQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVKK 117 (389)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 344455555567778888888888888888888888888877664
No 341
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=33.21 E-value=1.4e+02 Score=22.90 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhh
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFD 250 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~ 250 (256)
..++|..++.+|++|+-.||.....-+.--.+..++|.+-++
T Consensus 12 s~eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~~ir~vRr~IA 53 (69)
T COG0255 12 SVEELEEELRELKKELFNLRFQLATGQLENPHRIREVRRDIA 53 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 345677777777777777777666544433555555555544
No 342
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=32.82 E-value=1.4e+02 Score=23.24 Aligned_cols=32 Identities=41% Similarity=0.479 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
...++...+.|..+-..++.+|..+...+..+
T Consensus 86 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 86 IKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777888888888777777654
No 343
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.73 E-value=97 Score=24.14 Aligned_cols=32 Identities=38% Similarity=0.424 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+...|..+...|+.++..|..+...|+..+.
T Consensus 68 rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 68 RKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567888889999999999999998887653
No 344
>KOG0837|consensus
Probab=32.65 E-value=1.8e+02 Score=27.90 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+++.+||+.-..|+.+...|..++..|+..+-+
T Consensus 227 drisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e 259 (279)
T KOG0837|consen 227 DRISRLEDKVKTLKIYNRDLASELSKLKEQVAE 259 (279)
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 467788888888888888888888888887765
No 345
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=32.32 E-value=1.9e+02 Score=20.60 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+-..+.+|..-..+||..+.+-.+|+..||+.+..
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777788888889999999999999998765
No 346
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=32.31 E-value=62 Score=30.17 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELL 220 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L 220 (256)
.-+|...||.|...||++|+.+
T Consensus 120 AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888765
No 347
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=32.19 E-value=2.9e+02 Score=22.70 Aligned_cols=44 Identities=32% Similarity=0.335 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 189 REKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 189 ReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
++.-...+..+.+....++.+...||.+|..+..++..|+.-+.
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQ 79 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555666666655555555555544
No 348
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=32.14 E-value=2.7e+02 Score=23.47 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 180 RNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 180 RNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
|--..+..||.+=-.|.+|+.+++..||..-..|+..|...+.=.+
T Consensus 26 ~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~ 71 (112)
T PF07439_consen 26 RSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTD 71 (112)
T ss_pred HHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHH
Confidence 5566778899999999999999999999999999999987655433
No 349
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.05 E-value=2.3e+02 Score=22.46 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
.++.+++.|++.-..|+.++..+++++..
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666667777777666666543
No 350
>PRK09039 hypothetical protein; Validated
Probab=31.94 E-value=3.7e+02 Score=25.82 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..++..++.+..+...+|..|++|+..||..+.
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla 154 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLA 154 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555554443
No 351
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=31.85 E-value=55 Score=22.92 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
|-+.|..|..+|..|++++..|+
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~ 34 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLL 34 (46)
T ss_dssp ------------------HHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHH
Confidence 44444444444444444444444
No 352
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.85 E-value=3.7e+02 Score=23.94 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
-....+++.++.+|+.+...++.+.+...+|+..|+
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lk 165 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLK 165 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666654444433333333444443
No 353
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=31.85 E-value=1.3e+02 Score=22.11 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CCchhhHHHHHhhh
Q psy16107 210 NERLQKRIELLSEELNVLRSLFTNVGV---LPEHLHRELNKHFD 250 (256)
Q Consensus 210 N~~Lk~~Ie~L~kEl~~LK~ll~q~~~---lpe~~~~ev~~~l~ 250 (256)
++.+..+++.++.++..-|..|.++-+ |+.+....|...|.
T Consensus 2 ~~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~ 45 (57)
T PF12592_consen 2 PEEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQ 45 (57)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHH
Confidence 567889999999999999999998744 88887777765543
No 354
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=31.81 E-value=1.6e+02 Score=26.23 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHh
Q psy16107 207 VKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKH 248 (256)
Q Consensus 207 e~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~ 248 (256)
+.|-++||.++..++.||.+||+.|.. -+-...+|.+-
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~a----Ker~~~eLKrk 65 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAA----KERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHH
Confidence 455677777777788888888877765 34444444443
No 355
>smart00721 BAR BAR domain.
Probab=31.61 E-value=1.7e+02 Score=25.04 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=4.1
Q ss_pred hhhhccCc
Q psy16107 53 DLQNLIDD 60 (256)
Q Consensus 53 DlsayId~ 60 (256)
|+..|+.+
T Consensus 49 ~~~~y~q~ 56 (239)
T smart00721 49 DTKLYLQP 56 (239)
T ss_pred HHHHHcCC
Confidence 45555544
No 356
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=31.35 E-value=1.6e+02 Score=23.40 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|+.+|...-..|-++|++|+..++.++.-...
T Consensus 26 K~dqlss~vq~LnAkv~qLe~dv~a~~~~~qA 57 (78)
T COG4238 26 KIDQLSSDVQTLNAKVDQLENDVNAMRSDVQA 57 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666655544
No 357
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=31.33 E-value=1.2e+02 Score=26.54 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
..|..+.+.+.++.+||+|.+.-|.++..|.+.
T Consensus 115 ~~k~~eMe~Qv~iL~lE~eLe~ar~kL~~lRk~ 147 (152)
T PF01608_consen 115 QAKRQEMEAQVRILKLEKELEKARKKLAELRKA 147 (152)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666655543
No 358
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=31.31 E-value=86 Score=33.36 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcC
Q psy16107 199 TEEKVKLLV-KENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSY 252 (256)
Q Consensus 199 l~~kv~~Le-~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~ 252 (256)
+..++..|. .|..+|+.++++|++|++.|+.+|.....+-.-+..|+..+-+.|
T Consensus 427 l~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kf 481 (742)
T PRK05561 427 LELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKF 481 (742)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 445555665 456789999999999999999998862222222344444444444
No 359
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=31.30 E-value=1.6e+02 Score=28.39 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
+-.+++.+...|.++|...+..+..|...|..|...
T Consensus 109 ~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a 144 (355)
T PF09766_consen 109 QLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKA 144 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334555666677888888888888887777766644
No 360
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=31.22 E-value=1e+02 Score=29.79 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCchhh
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGV----LPEHLH 242 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~----lpe~~~ 242 (256)
-.+|..+++.++.+++.....+..+|..|+..+..|..-...-|+ |||...
T Consensus 149 ~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg~e 203 (370)
T PF02994_consen 149 LEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEGEE 203 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT
T ss_pred HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCCcc
Confidence 344455555555555555555556666666666666665555555 888754
No 361
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.21 E-value=1.6e+02 Score=24.60 Aligned_cols=30 Identities=40% Similarity=0.583 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQ---KRIELLSEELNVLR 228 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk---~~Ie~L~kEl~~LK 228 (256)
+.+++..|..+|+.++ .++..|+.++..|.
T Consensus 49 l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 49 LREEIVKLMEENEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554443 33444455554444
No 362
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=31.12 E-value=3.1e+02 Score=22.86 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 182 NIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 182 NiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
|.|.|+-++-.++...--..--.++..-.+.+..+++.|..+++.|..++.
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~ 56 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554444333332222233333344444455555555555554444
No 363
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=31.09 E-value=3.6e+02 Score=23.50 Aligned_cols=11 Identities=18% Similarity=0.610 Sum_probs=4.9
Q ss_pred hHHHHHhhhcC
Q psy16107 242 HRELNKHFDSY 252 (256)
Q Consensus 242 ~~ev~~~l~~~ 252 (256)
...|+..+.+|
T Consensus 148 ~~~~~~~~~~~ 158 (221)
T PF04012_consen 148 QKKVNEALASF 158 (221)
T ss_pred HHHHHHHhccC
Confidence 33444444443
No 364
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.09 E-value=2.3e+02 Score=26.82 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
..++.++..|+.+...|.++|....+||.+|+-.
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY 110 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY 110 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667788888888888888888888877643
No 365
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.95 E-value=2.2e+02 Score=28.91 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
..|++|.+.|.+++++.++|++.|+..+
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777776544
No 366
>PRK06798 fliD flagellar capping protein; Validated
Probab=30.95 E-value=2.7e+02 Score=27.68 Aligned_cols=35 Identities=14% Similarity=0.381 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++.+-+.|.++...|...|.+|..+...|..|+.+
T Consensus 402 l~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~~~~ 436 (440)
T PRK06798 402 NKQKQDNIVDKYQKLESTLAALDSQLKTIKAMTKQ 436 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444556666666666777777777777776665
No 367
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.86 E-value=1.3e+02 Score=29.40 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..|+++.+.|..++..|+.++..|+.-+..
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554
No 368
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=30.79 E-value=1.4e+02 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELL 220 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L 220 (256)
..++.+...+..+...++++++-|
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 80 EALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444555555555555443
No 369
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.67 E-value=1.9e+02 Score=22.26 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.-+++-+.+...|+.+|+..+.-+..+|+
T Consensus 52 ~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 52 RSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555544444444
No 370
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=30.65 E-value=1.4e+02 Score=25.70 Aligned_cols=19 Identities=47% Similarity=0.587 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSE 222 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~k 222 (256)
..|..+++.|+.+|+.|+.
T Consensus 76 ~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444
No 371
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.54 E-value=3.5e+02 Score=28.30 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+...|..++..++.+|.+|+.++..|..
T Consensus 206 ~E~~~L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 206 EERESLKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555554433
No 372
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=30.48 E-value=3.3e+02 Score=26.52 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
++.+++.+|+++..+|+++|++|+
T Consensus 293 e~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 293 EAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444443333
No 373
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=30.27 E-value=1.4e+02 Score=24.75 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+..|+++|..|..+-..|+-+++.|.+||..
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888765
No 374
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=30.24 E-value=3.5e+02 Score=23.14 Aligned_cols=46 Identities=33% Similarity=0.385 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q psy16107 196 SRETEEKVKLLVKENE-RLQKRIELLSEELNVLRSLFTNVGVLPEHL 241 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~-~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~ 241 (256)
..++++.+.++.++.+ ...++|.+...++..++++|...|+=|+.+
T Consensus 23 ~~ek~eq~~~~r~~e~~~~~~~i~e~~~~~~~~~e~~~k~~i~~~el 69 (128)
T COG2916 23 MLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLIKDGITPEEL 69 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3334444444444333 344567788888999999999988766655
No 375
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.20 E-value=1.1e+02 Score=24.39 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++++|..+...|..+|.+|..+++.+|.-...
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~a 56 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYA 56 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888999999998888888876644
No 376
>KOG0709|consensus
Probab=30.16 E-value=63 Score=32.97 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=37.2
Q ss_pred CCCCCCCCCCHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 162 KNGKSVDKNTDEYKRRRERNNIAVRKSR-EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 162 k~~k~~~k~dd~Yr~RReRNNiAaRKSR-eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
........+.++-..||.|-.|+=|+|- ++||.|.. -++.||.-...--++-.+|++.+..|
T Consensus 236 lPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKke----Yid~LE~rv~~~taeNqeL~kkV~~L 298 (472)
T KOG0709|consen 236 LPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKE----YIDGLESRVSAFTAENQELQKKVEEL 298 (472)
T ss_pred CcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhh----HHHHHhhhhhhcccCcHHHHHHHHHH
Confidence 3445556777888888998888888887 45555432 33445544444444444555555444
No 377
>PRK04406 hypothetical protein; Provisional
Probab=30.15 E-value=2.5e+02 Score=21.49 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+.-+++|-....+..++|..|++++..|++-|..
T Consensus 23 QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 23 QEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555566666666666655555544
No 378
>KOG1055|consensus
Probab=30.11 E-value=31 Score=37.40 Aligned_cols=39 Identities=36% Similarity=0.498 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
.+.-+++..-|+.||.+|++.|.+.++.+..+|+-|...
T Consensus 754 ~k~~eer~~~lk~EN~~l~~~i~ekee~i~e~~~~l~~~ 792 (865)
T KOG1055|consen 754 NENEEERLRLLKKENRRLRKKIMEKEERLSELKHQLQPR 792 (865)
T ss_pred chhHHHHhhhhhcccHHHHHhcccchHHHHHHHHhcccc
Confidence 344456888999999999999999999999999988763
No 379
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.08 E-value=2.7e+02 Score=22.77 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
...-|.|++.|..+++.|..++.
T Consensus 75 nl~ae~ei~~l~~~l~~l~~~~~ 97 (108)
T PF06210_consen 75 NLKAEQEIERLHRKLDALREKLG 97 (108)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhH
Confidence 33445555555555555554443
No 380
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=29.91 E-value=1.5e+02 Score=26.19 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+..+|..||..|+.-+++-+.-++.+-.-++
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq~alelIM~KyR 101 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQSALELIMSKYR 101 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999987777665444333
No 381
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=29.63 E-value=1.6e+02 Score=23.22 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+-.+.++||+|.+.|-..|+.++++-+....-+..
T Consensus 5 ~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~ 39 (84)
T PF11414_consen 5 MLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQS 39 (84)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999998877776654
No 382
>PRK00295 hypothetical protein; Provisional
Probab=29.57 E-value=2.4e+02 Score=21.08 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.-.+.-+++|-....+..++|..|++++..|.+-|..
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677777777777777777777777666654
No 383
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.56 E-value=3.8e+02 Score=23.44 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.-+..++.|.+....|..+|+.++.+++....
T Consensus 124 ~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~ 155 (200)
T cd07624 124 EYELSVEELNKKRLELLKEVEKLQDKLECANA 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555444433
No 384
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=29.44 E-value=2.1e+02 Score=23.98 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENER----LQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~----Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++.+|+.||.. |+..|.+.+..+..++.+|..
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554 444445555555555665554
No 385
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.42 E-value=2.3e+02 Score=23.12 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEEL 224 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl 224 (256)
|+.+-..++.+++++...+
T Consensus 113 l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 113 LEEALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 386
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.32 E-value=99 Score=23.68 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 212 RLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 212 ~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+|..+|..|+.|+..|+.-+.
T Consensus 29 El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 29 ELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 387
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=29.28 E-value=93 Score=22.94 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie 218 (256)
+..+++.|+++|.+|+.-+.
T Consensus 38 l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 38 LIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455778888888776554
No 388
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.27 E-value=1.8e+02 Score=23.34 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.+.|++.-+.|...+..+++++..+...+
T Consensus 96 ~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 96 IEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 389
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.21 E-value=1.9e+02 Score=23.51 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy16107 219 LLSEELNVLRSLF 231 (256)
Q Consensus 219 ~L~kEl~~LK~ll 231 (256)
.|+.|+..+|..+
T Consensus 33 ~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 33 QLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHhc
Confidence 3444455555444
No 390
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.08 E-value=1.9e+02 Score=25.56 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.+-+.+++.|..-|..||.++++.....+.|.
T Consensus 70 eEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~ 101 (182)
T PF15035_consen 70 EEEQQRSEELAQVNALLREQLEQARKANEALQ 101 (182)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555656666666555444443333333
No 391
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.04 E-value=2e+02 Score=30.52 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=33.5
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 171 TDEYKRRRERNNIAVRKSREKAKIRSRETEEK--------------VKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 171 dd~Yr~RReRNNiAaRKSReKrK~R~~el~~k--------------v~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
...+..|-++.-...|-=....|+.++++..+ +.+|+.||+.|+.+|..|.+....=|
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DK 487 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDK 487 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555655555544444446666777776666 55566666666666666555444333
No 392
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=28.98 E-value=3.6e+02 Score=24.68 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
....+...+..+...|+.++..++++++.+...+.
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666667777777777777766665544
No 393
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=28.92 E-value=3.9e+02 Score=25.54 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
+++.+.+++...++.+|...+..+..|
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 394
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=28.78 E-value=2e+02 Score=20.80 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..|+...+.|+.+|..|+.-+...|...+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa~l 30 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKAEL 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888888887766
No 395
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.74 E-value=1.3e+02 Score=27.39 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 181 NNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 181 NNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
|+-....+|.--|+. ..+..++..|..||..|....+.|+
T Consensus 83 ~~~L~aq~rqlEkE~-q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQ-QSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 444444444333322 2344455555555555544444433
No 396
>PF13166 AAA_13: AAA domain
Probab=28.71 E-value=5.9e+02 Score=25.92 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcC
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSY 252 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~ 252 (256)
.++.+...++.++..+++++..|+.-+.. -+..-..||..|..|
T Consensus 428 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 428 SLEKKLKKAKEEIKKIEKEIKELEAQLKN----TEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHh
Confidence 33444445555555566666666665554 355556677766665
No 397
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=28.42 E-value=1.9e+02 Score=22.44 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.|..|..|++.|-.++..++.|+..++.--
T Consensus 4 dv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 4 DVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655555443
No 398
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=28.17 E-value=2.7e+02 Score=22.30 Aligned_cols=44 Identities=32% Similarity=0.458 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q psy16107 185 VRKSREKAKIRSRETEEKVKLLVKE------NERLQKRIELLSEELNVLR 228 (256)
Q Consensus 185 aRKSReKrK~R~~el~~kv~~Le~E------N~~Lk~~Ie~L~kEl~~LK 228 (256)
+++.|-.-++++.++..++.+|.++ +..++.+|+.+++++..-|
T Consensus 22 v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r 71 (106)
T PF05837_consen 22 VEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSR 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 3444444444444544455444433 2345566666666655444
No 399
>PF14282 FlxA: FlxA-like protein
Probab=28.01 E-value=1.9e+02 Score=23.18 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 212 RLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 212 ~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..+.++..|..+|..|...|.
T Consensus 48 ~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 48 QKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 400
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=28.00 E-value=4.7e+02 Score=26.69 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16107 172 DEYKRRRERNNIAVRKSR-EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGV 236 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSR-eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~ 236 (256)
+.|+-++.|+.+.--... +.-......+...+..|......-+.+|.+|+.....+|.-|..++.
T Consensus 92 ~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~ 157 (560)
T PF06160_consen 92 DKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSF 157 (560)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555444444 44455555666667777777777777888888888888877776533
No 401
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.88 E-value=1.4e+02 Score=28.07 Aligned_cols=9 Identities=44% Similarity=0.652 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy16107 222 EELNVLRSL 230 (256)
Q Consensus 222 kEl~~LK~l 230 (256)
.+++.||.+
T Consensus 96 ~~l~~l~~~ 104 (247)
T COG3879 96 DRLEKLRML 104 (247)
T ss_pred HHHHHHHHH
Confidence 334444433
No 402
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=27.86 E-value=1.4e+02 Score=22.91 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.++.+.+.....+++.+|+.|+..|..|.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666777777777777777777664
No 403
>PF15335 CAAP1: Caspase activity and apoptosis inhibitor 1
Probab=27.86 E-value=28 Score=26.46 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=17.2
Q ss_pred hhhhccCccccchhhHHHHhhcCC
Q psy16107 53 DLQNLIDDSQFNEGLFTEILNQGQ 76 (256)
Q Consensus 53 DlsayId~~~f~d~~ladlf~~~~ 76 (256)
+||+|||| +.+++..+|..=+
T Consensus 4 pis~Yi~D---r~Eml~Q~F~~l~ 24 (64)
T PF15335_consen 4 PISFYIDD---RKEMLRQCFSVLK 24 (64)
T ss_pred cHHHHHcc---HHHHHHHHHHHcC
Confidence 58999999 5899999996544
No 404
>KOG3436|consensus
Probab=27.82 E-value=3e+02 Score=23.53 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H------------HHHHHHHHHHHHhcCCCCch
Q psy16107 185 VRKSREKAKIRSRETEEKVKLLVKENERLQKRIEL------------L------------SEELNVLRSLFTNVGVLPEH 240 (256)
Q Consensus 185 aRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~------------L------------~kEl~~LK~ll~q~~~lpe~ 240 (256)
.-|+++=+.....++.+++.+|..|...|+..-.. . +.+...|++.+..+..+|-.
T Consensus 3 kik~~eLr~~~ke~L~~ql~dLK~ELa~LRv~K~tgg~~~klskik~vrKsiArvLTVine~~k~~lr~~yk~~k~~p~d 82 (123)
T KOG3436|consen 3 KIKARELRGKSKEQLLKQLDDLKVELAQLRVAKVTGGAASKLSKIKVVRKSIARVLTVINEKQKEELREAYKGKKYLPKD 82 (123)
T ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcccccchh
Confidence 34566666555677888888888888888754322 1 22344556666666666666
Q ss_pred hhHHHHH
Q psy16107 241 LHRELNK 247 (256)
Q Consensus 241 ~~~ev~~ 247 (256)
+-+..++
T Consensus 83 Lr~KktR 89 (123)
T KOG3436|consen 83 LRPKKTR 89 (123)
T ss_pred hhHHHHH
Confidence 6554443
No 405
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.76 E-value=2.9e+02 Score=21.41 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELL 220 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L 220 (256)
+..|..+...|..++..+
T Consensus 76 ~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 76 VKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 406
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.70 E-value=1.7e+02 Score=30.63 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHL 241 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~ 241 (256)
++++|..|.+.-..+|+.|+...+.|+..+...||-+++.
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~f 370 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQF 370 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHH
Confidence 4556777777777788888888888888888888866654
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.69 E-value=6.5e+02 Score=26.91 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCCchhhHHHHHhh
Q psy16107 197 RETEEKVKLLVKENERLQKRIEL-------LSEELNVLRSLFTNVGVLPEHLHRELNKHF 249 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~-------L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l 249 (256)
.+++++.+.|...-++|..+++. |.+.++.+...+..+........++..+-|
T Consensus 582 ~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL 641 (717)
T PF10168_consen 582 QELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKEL 641 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 34455555555555555555554 444455555555443333334444444333
No 408
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.66 E-value=2.7e+02 Score=21.04 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-.+.-+++|-+...+..++|..|++++..|++-|..
T Consensus 19 fQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 19 FQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666667777777777766666655
No 409
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=27.63 E-value=2.1e+02 Score=21.74 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
+..+.+++..+..|+..|..+++.-...|+.+
T Consensus 23 N~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 23 NRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666555544433
No 410
>KOG0933|consensus
Probab=27.53 E-value=3.5e+02 Score=30.64 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++|..+-..+++.-+.+.+.|..++++|++|+..++..+.+
T Consensus 799 ~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~ 840 (1174)
T KOG0933|consen 799 AKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQ 840 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555566666666666666666666666655
No 411
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=27.53 E-value=4.7e+02 Score=23.75 Aligned_cols=54 Identities=30% Similarity=0.415 Sum_probs=33.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 174 YKRRRERNNIAVRKSREKAKIRSRETEEKV------------KLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 174 Yr~RReRNNiAaRKSReKrK~R~~el~~kv------------~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
.-.+|..+=.|+.-+|-++-..+.+-+.+- .-|++|.++|+..|+.-+.+...+
T Consensus 95 ~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~ 160 (192)
T PF09727_consen 95 KMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKL 160 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888887777765555543322 247777777777766544444333
No 412
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.44 E-value=2.7e+02 Score=23.04 Aligned_cols=61 Identities=26% Similarity=0.400 Sum_probs=42.2
Q ss_pred HHHHHHHhhhH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 173 EYKRRRERNNI---AVRKSREKAKIRSRET---EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 173 ~Yr~RReRNNi---AaRKSReKrK~R~~el---~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+|-.-|.-|.+ ||---+.|-..-...+ +..+..++.||+-|.-+-.+|++.+..|..-|..
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666543 4544454443333333 3456788999999999999999999999887773
No 413
>PHA03162 hypothetical protein; Provisional
Probab=27.33 E-value=88 Score=27.09 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 210 NERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 210 N~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
-++|-++|..|+-|...||..+.+.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888888999999999998765
No 414
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=27.33 E-value=1.5e+02 Score=30.35 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
...++++.+.|.++|+.|++++..|...|.+
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~ 588 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGD 588 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556666777777777777777776654
No 415
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.32 E-value=1.5e+02 Score=27.05 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..++..++..+..|.+|..+|..|.+.+..+...+..
T Consensus 25 ~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~ 61 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK 61 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666665554443
No 416
>PRK02119 hypothetical protein; Provisional
Probab=27.30 E-value=2.8e+02 Score=21.07 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-.+.-+++|-....+..++|..|++++..|++-|..
T Consensus 20 ~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 20 FQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666666666666666666666665554
No 417
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=27.27 E-value=2.2e+02 Score=30.74 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
+++...-.....+..+++-+++||..||-+|-.|.+||+
T Consensus 127 ~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 127 EEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455567888899999999998877766666654
No 418
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.26 E-value=81 Score=28.93 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
++.+|..|+.|.+.|+++++.|-
T Consensus 190 learv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 190 LEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777777653
No 419
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=27.17 E-value=2.2e+02 Score=25.26 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-.....++++.|+.....|...++.+.+++..++..+.|
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~q 111 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQ 111 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHH
Confidence 344455566666666666666666666666666666555
No 420
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.12 E-value=3.7e+02 Score=22.36 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
++..|+.+...++..+..++.+.
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~ 168 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRY 168 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 421
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=27.06 E-value=1.4e+02 Score=23.15 Aligned_cols=26 Identities=31% Similarity=0.183 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
++.++-++|+++...|..+|-.++.+
T Consensus 6 ~l~~~k~~Le~~L~~lE~qIy~~Et~ 31 (80)
T PF09340_consen 6 ELLQKKKKLEKDLAALEKQIYDKETS 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666655544
No 422
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=27.00 E-value=1.1e+02 Score=28.55 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
|-+.|..+|.-.++|.+||++|+.+|..
T Consensus 46 laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 46 LAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888889999999999999999866
No 423
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.90 E-value=2.7e+02 Score=28.64 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
...+.+++++-..|.+++++|++|++.|++.+..
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~ 125 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIER 125 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554443
No 424
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=26.79 E-value=2.7e+02 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+..++.+...++.++..++.++..++..+.
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 133 (322)
T TIGR01730 104 LDDAKAAVEAAQADLEAAKASLASAQLNLR 133 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555566666666666666655443
No 425
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=26.78 E-value=96 Score=24.37 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.++.++-.+|+.+..+|++++.+++++....+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~d 35 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKED 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 456677788999999999999999998766654
No 426
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.76 E-value=1.7e+02 Score=30.06 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.-.++.+++..|.++..+|+.++++|++++..|+-
T Consensus 94 ~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44677778888888888888888888888887765
No 427
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.72 E-value=1.1e+02 Score=28.07 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhc
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDS 251 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~ 251 (256)
..++.|++.+..+..+++..++++...|.-+..+----..+-+|||.-|+.
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666666666554322345556677766653
No 428
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=26.62 E-value=2.4e+02 Score=20.20 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
.++...+.+++.+|.+...+|..|+.=++.|
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~L 33 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNL 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888889998888888888766644
No 429
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.47 E-value=4.1e+02 Score=29.67 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16107 172 DEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVG 235 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~ 235 (256)
+.+..+-.....+.+.-+++-+....+.+.+..+|+++...++..+..+..-+..|+.++...+
T Consensus 819 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 882 (1201)
T PF12128_consen 819 PELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLA 882 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444555555566666667777777888888888888888888888888888888887753
No 430
>KOG3156|consensus
Probab=26.40 E-value=1.5e+02 Score=27.56 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
.+...|..||++|+..|+.|+..
T Consensus 116 sEF~~lr~e~EklkndlEk~ks~ 138 (220)
T KOG3156|consen 116 SEFANLRAENEKLKNDLEKLKSS 138 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777776654
No 431
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=26.37 E-value=1.3e+02 Score=27.38 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhc
Q psy16107 212 RLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDS 251 (256)
Q Consensus 212 ~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~ 251 (256)
.+..+|.+|+.++..++.++.+.--||.....+|.+.|..
T Consensus 47 q~~~Qi~qlqnQiq~y~nql~n~~~L~~~~~~~~~~~l~~ 86 (246)
T TIGR02780 47 QLNNQIQQLQNQIQRYENQLKNTMSLPANIWNRLESSLQK 86 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4455566777777777777776555888888888777664
No 432
>KOG0447|consensus
Probab=26.36 E-value=1.7e+02 Score=31.50 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy16107 213 LQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 213 Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-.++++.|++|...||.++++
T Consensus 249 YQreLErlEKENkeLr~lll~ 269 (980)
T KOG0447|consen 249 YQRILERLEKENKELRKLVLQ 269 (980)
T ss_pred HHHHHHHHHHhhHHHHHHHhh
Confidence 345566666666666666665
No 433
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=26.31 E-value=2.4e+02 Score=22.01 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
+.+.++..=-.|...++..|-+|+..
T Consensus 29 e~e~ki~~Qi~Em~~ir~~v~eLE~~ 54 (79)
T PF08581_consen 29 EYEHKINSQIQEMQQIRQKVYELEQA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 434
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.03 E-value=2.1e+02 Score=23.84 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+|.+.-|.-..++...-+.|+.-+..|+++-..+.+-+..|..
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqa 65 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQA 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333344444444444444444444444443
No 435
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=25.97 E-value=2.2e+02 Score=24.71 Aligned_cols=10 Identities=10% Similarity=0.713 Sum_probs=4.6
Q ss_pred CCCCHHHHHH
Q psy16107 168 DKNTDEYKRR 177 (256)
Q Consensus 168 ~k~dd~Yr~R 177 (256)
...|++||++
T Consensus 31 RR~dPdFRkk 40 (148)
T TIGR00985 31 RRNDPDFRKK 40 (148)
T ss_pred hccCHHHHHH
Confidence 3445555544
No 436
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.96 E-value=3.9e+02 Score=25.38 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..-..+...++..+..|..+...|..+|+..+.|++..+.=|..
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s 215 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS 215 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677778888888888888888888888776665554
No 437
>PF14182 YgaB: YgaB-like protein
Probab=25.94 E-value=3.1e+02 Score=21.83 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 207 VKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 207 e~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+-..++.+|...+++|..+..+|..
T Consensus 39 ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 39 EAELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788889999999999988875
No 438
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=25.93 E-value=1.9e+02 Score=27.85 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
..+.....|...+..|.+-..-+...|
T Consensus 126 ~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 126 KKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444433
No 439
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=25.81 E-value=89 Score=23.44 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy16107 181 NNIAVRKSREKAKIRSRETEEK 202 (256)
Q Consensus 181 NNiAaRKSReKrK~R~~el~~k 202 (256)
|..||.+||++|+--.+.+..+
T Consensus 10 ~eeaV~~CkeRkr~~k~Av~~R 31 (60)
T PF04783_consen 10 DEEAVSLCKERKRLMKQAVDAR 31 (60)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999998776666555
No 440
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=25.70 E-value=3.9e+02 Score=24.36 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHREL 245 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev 245 (256)
.....+..++.+...++.++...+++++..+.|+.+ |.++.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~-g~iS~~~~d~~ 140 (327)
T TIGR02971 94 KLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRD-GAVSASDLDSK 140 (327)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence 344556667777788888888888999999998876 77765554433
No 441
>PRK04325 hypothetical protein; Provisional
Probab=25.63 E-value=3e+02 Score=20.89 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-.+.-+++|-....+..++|..|++++..|.+-+..
T Consensus 20 fQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 20 FQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666655554
No 442
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=25.41 E-value=2.3e+02 Score=27.71 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+|.-|..++.+|+.+|..+++||..++.
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k 203 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKK 203 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777665543
No 443
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.35 E-value=1.9e+02 Score=27.21 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.+...+..++++-..|..+|+.|++.++..+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555544444
No 444
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=25.32 E-value=4.3e+02 Score=28.51 Aligned_cols=62 Identities=26% Similarity=0.284 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 172 DEYKRRRERNNIAVRKSRE-KA--KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSRe-Kr--K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+.|.-|.+.|....+..+ +. +.+...+..++..+++....-+.+|..|++++..+..+--.
T Consensus 373 ~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E 437 (717)
T PF09730_consen 373 AELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGE 437 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666665543 22 34455666777777776666677888888888887776554
No 445
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=25.26 E-value=1.6e+02 Score=29.48 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=29.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhh
Q psy16107 202 KVKLLVK-ENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFD 250 (256)
Q Consensus 202 kv~~Le~-EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~ 250 (256)
++..|.. |.++|+.++++|++|++.|+.++.+ +......+.+-|+
T Consensus 398 ~L~~LT~~e~~kL~~E~~~l~~ei~~l~~~l~~----~~~~~~~i~~eL~ 443 (445)
T cd00187 398 RLRRLTKLEREKLLKELKELEAEIEDLEKILAS----EERPKDLWKEELD 443 (445)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcC----hHHHHHHHHHHHH
Confidence 3344443 4678999999999999999998865 3444444444443
No 446
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.25 E-value=3.3e+02 Score=21.72 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
|...++...+.|+++-..|+.++..+...+..
T Consensus 95 r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 95 KIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777776654
No 447
>PRK00736 hypothetical protein; Provisional
Probab=25.23 E-value=2.9e+02 Score=20.62 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
....+.-+++|-....+..++|..|++++..|.+-|..
T Consensus 14 lafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 14 VAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777777777888888888877776665
No 448
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.20 E-value=3.1e+02 Score=25.09 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
+.++.....|.+.|+.+|..|+.|+..||..+...
T Consensus 72 e~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 72 ENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 34555666778889999999999999999998875
No 449
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.13 E-value=4.8e+02 Score=23.01 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIE 218 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie 218 (256)
++.+|+.++..|+++++
T Consensus 111 ~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 111 ELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 450
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.04 E-value=3.6e+02 Score=21.53 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=33.4
Q ss_pred HhhhHHHHHHHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 179 ERNNIAVRKSREK-----AKIRSRETE-EKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 179 eRNNiAaRKSReK-----rK~R~~el~-~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
++..+....||.. +|.+..++. +.-..|++|-..|+.++...++|+..||.
T Consensus 8 d~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3455555566543 222222222 24467889999999999999999999885
No 451
>PRK01156 chromosome segregation protein; Provisional
Probab=24.85 E-value=2.6e+02 Score=29.50 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCc
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT---NVGVLPE 239 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~---q~~~lpe 239 (256)
+..+++.|.++-..|+.+|..|+.++..|+...- ..|++|-
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~ 457 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPV 457 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 3345666777777778888888887777776443 3455543
No 452
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=24.84 E-value=4.2e+02 Score=28.08 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCC
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEE---LNVLRSLFTNVGV 236 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kE---l~~LK~ll~q~~~ 236 (256)
+.+.+-+...+++..+|..-|.+|+.+|.+.++- +...++-|.|+|.
T Consensus 331 ~a~~eLE~rV~eRTadL~~~n~~l~~EIaer~~ae~~LR~~QdeLvQA~k 380 (603)
T COG4191 331 EARAELERRVEERTADLTRANARLQAEIAEREQAEAALRRAQDELVQAGK 380 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778888889999999999999876544 4444556666655
No 453
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=24.72 E-value=2e+02 Score=25.76 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
...+..++...+.-.+....+|..|+.+++.|..-|..
T Consensus 178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555555554443
No 454
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.59 E-value=2.7e+02 Score=22.70 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+..+.+.|+..-..|...+..++++++.+...+.+
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666666555555443
No 455
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.50 E-value=3.2e+02 Score=22.36 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+..+.+.++.+...|.++.+.|++.+..+..
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666554443
No 456
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=24.49 E-value=1.1e+02 Score=32.73 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16107 206 LVKENERLQKRIELLSEELNVLRSLFTNVG 235 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~ 235 (256)
+++|.++|.++++.|++|++.++..|...+
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~ 838 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEG 838 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 344444555555555555555555554433
No 457
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=24.46 E-value=1.7e+02 Score=28.66 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIEL---LSEELNVLRSLFT 232 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~---L~kEl~~LK~ll~ 232 (256)
.+.++-++|++||.+|+.++.. +.+|...|+.++.
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 61 VLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445666777777665554 3355555665543
No 458
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.40 E-value=1.3e+02 Score=34.33 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLS----EELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~----kEl~~LK~ll~q 233 (256)
+++....+.||++|+++|+.|+ .|+.+|+++|..
T Consensus 1217 ~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1217 QKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAE 1254 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667788999999999999997 467889987754
No 459
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.34 E-value=4.6e+02 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.++..-..+-..|..+|..|++++..++..+.+
T Consensus 51 ~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 51 EKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444455555555544444443
No 460
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=24.33 E-value=2.5e+02 Score=24.05 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++..++.+..|-.+|..+...+++.++.||+.|..
T Consensus 52 ~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 52 LEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777888888888888888877664
No 461
>KOG1029|consensus
Probab=24.25 E-value=4.3e+02 Score=29.45 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 212 RLQKRIELLSEELNVLRS 229 (256)
Q Consensus 212 ~Lk~~Ie~L~kEl~~LK~ 229 (256)
.|+++..+|..|++.|-.
T Consensus 434 ~~nak~~ql~~eletLn~ 451 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNF 451 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 462
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=24.11 E-value=1.4e+02 Score=30.64 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
...+++++.||++.++|..+|++|+.++.
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556777889999999999988888874
No 463
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.04 E-value=5.8e+02 Score=23.58 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=27.6
Q ss_pred HHHHHH-HHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHH
Q psy16107 184 AVRKSR-EKAKI-RSRETEEKVKLLVKENER-LQKRIELLSEELN-VLRSLFT 232 (256)
Q Consensus 184 AaRKSR-eKrK~-R~~el~~kv~~Le~EN~~-Lk~~Ie~L~kEl~-~LK~ll~ 232 (256)
-++||| ++++. |+..-+.+.++||++..- ++++-..|.+|.. ..++|+.
T Consensus 66 l~~k~~vd~~eayr~aae~~Kaeqlerdk~l~~qQk~~a~~ke~kAqvkqLIe 118 (215)
T COG3122 66 LAKKSRVDAREAYRIAAEENKAEQLERDKQLSEQQKQAALAKEYKAQVKQLIE 118 (215)
T ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466676 45554 555566677778777632 4444445555544 4444433
No 464
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=24.01 E-value=5.8e+02 Score=23.60 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLP 238 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lp 238 (256)
.+..++..++.+-..+++++..+++++...+.++.. |++.
T Consensus 155 ~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~-g~is 194 (423)
T TIGR01843 155 QLEAELAGLQAQLQALRQQLEVISEELEARRKLKEK-GLVS 194 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC
Confidence 334444455555555555555566666666666554 5544
No 465
>KOG0982|consensus
Probab=24.01 E-value=1.2e+02 Score=30.98 Aligned_cols=33 Identities=42% Similarity=0.430 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+|+..|+.| .|..+|.+|..|+..||.+...
T Consensus 290 k~eReasle~E--nlqmr~qqleeentelRs~~ar 322 (502)
T KOG0982|consen 290 KKEREASLEKE--NLQMRDQQLEEENTELRSLIAR 322 (502)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444 4666777888888888877765
No 466
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=24.01 E-value=4.2e+02 Score=23.68 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
++-|+.+..+... |+.+++.+.+.+++|++++..++..+.
T Consensus 26 ~~~kqve~~~l~~---lkqqqd~itk~veeLe~~~~q~~~~~s 65 (165)
T PF09602_consen 26 SFMKQVEQQTLKK---LKQQQDWITKQVEELEKELKQFKREFS 65 (165)
T ss_pred HHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443322 555555566666666666555554444
No 467
>PF15456 Uds1: Up-regulated During Septation
Probab=23.93 E-value=4.3e+02 Score=22.10 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
....++.+..+.+.-+.+-.++..+++.+..++.-|++|
T Consensus 76 ~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH 114 (124)
T PF15456_consen 76 SLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEH 114 (124)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777888888888888777764
No 468
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.91 E-value=1.9e+02 Score=28.37 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.-..|+.....|.+++..|+..+.+
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~ 400 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKE 400 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666655554
No 469
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=23.90 E-value=1.5e+02 Score=29.95 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy16107 213 LQKRIELLSEELNV 226 (256)
Q Consensus 213 Lk~~Ie~L~kEl~~ 226 (256)
|..+|..|++.+..
T Consensus 103 ~~~ei~~l~~~~~~ 116 (431)
T PLN03230 103 FSAQIAELEERYDQ 116 (431)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 470
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=23.83 E-value=2.8e+02 Score=19.91 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhh
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHF 249 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l 249 (256)
..++|..+|.+|++|+-.||....--++--.+..+.+.+-+
T Consensus 8 s~~eL~~~l~elk~eL~~Lr~q~~~~~l~n~~~ir~~Rr~I 48 (58)
T PF00831_consen 8 SDEELQEKLEELKKELFNLRFQKATGQLENPHRIREIRRDI 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 45677788888888888888766653333334444444433
No 471
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.83 E-value=3.1e+02 Score=20.40 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+..++...|..|......|...|..|+.++...++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666655554
No 472
>KOG4593|consensus
Probab=23.79 E-value=2.9e+02 Score=29.78 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|...|+++|+.+++-...||.+|..
T Consensus 601 ev~qlk~ev~s~ekr~~rlk~vF~~ 625 (716)
T KOG4593|consen 601 EVAQLKKEVESAEKRNQRLKEVFAS 625 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777765
No 473
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=23.79 E-value=1.6e+02 Score=24.59 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
+..|+.+.++|+.+|..|+.++.
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 85 MDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777777777777777653
No 474
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=23.45 E-value=2.7e+02 Score=23.73 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLH 242 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~ 242 (256)
+.+.+.+..+++..+.+.-+..++.++.+.|+-++.+.
T Consensus 39 er~~~~~~~~~~~~er~~~l~~i~~~~~~~Git~eeL~ 76 (134)
T PRK10328 39 ERREEEEQQQRELAERQEKINTWLELMKADGINPEELL 76 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 44455556666666677778899999999999887774
No 475
>PRK01203 prefoldin subunit alpha; Provisional
Probab=23.32 E-value=1.7e+02 Score=24.94 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+..++..|+.+-+.|..++..|+.-...+..
T Consensus 5 ~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~ 35 (130)
T PRK01203 5 VEAQLNYIESLISSVDSQIDSLNKTLSEVQQ 35 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 476
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=23.32 E-value=1.1e+02 Score=32.17 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
+|+++.++|+++|..|.++|.
T Consensus 83 ~L~~everLraei~~l~~~I~ 103 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIE 103 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 477
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.32 E-value=2.3e+02 Score=27.57 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhcCCCCchhhHHHHHhhhc
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIEL---------------------LSEELNVLRSLFTNVGVLPEHLHRELNKHFDS 251 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~---------------------L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~ 251 (256)
|.|-.+.+.++..-+.|.++||.++.. ..+||+.||+.+.. .-....+-++-++.
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieT----mrssL~ekDkGiQK 149 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIET----MRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhchhhhhHHH
Q ss_pred C
Q psy16107 252 Y 252 (256)
Q Consensus 252 ~ 252 (256)
|
T Consensus 150 Y 150 (305)
T PF15290_consen 150 Y 150 (305)
T ss_pred H
No 478
>KOG2010|consensus
Probab=23.25 E-value=3.2e+02 Score=27.30 Aligned_cols=57 Identities=25% Similarity=0.273 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16107 172 DEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGV 236 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~ 236 (256)
|.-.++=+-=|+..|-||+|-|+ ++.++.--..|..+.++|+.+|..=.+|+..+|.
T Consensus 154 D~LeE~eeqLaeS~Re~eek~kE--------~er~Kh~~s~Lq~~~~elKe~l~QRdeliee~Gl 210 (405)
T KOG2010|consen 154 DVLEEQEEQLAESYRENEEKSKE--------LERQKHMCSVLQHKMEELKEGLRQRDELIEEHGL 210 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCe
Confidence 34455666667777778777654 4556667778888888888888888888888887
No 479
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=23.25 E-value=1e+02 Score=26.08 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 208 KENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.+.+.|..+|++|+.+|..|.
T Consensus 109 ~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 109 KDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 466778888888888887765
No 480
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=22.96 E-value=2.8e+02 Score=21.63 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEE---LNVLRSLF 231 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kE---l~~LK~ll 231 (256)
|..+|++...+..+.+.+|.+-++.+++- +..|+...
T Consensus 1 rI~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY 40 (90)
T PF14131_consen 1 RIQEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYY 40 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666555544 44555444
No 481
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.93 E-value=2.6e+02 Score=22.00 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
...|+.....|..+|+.|+.-++.|...+
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 81 LELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665555544
No 482
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=22.80 E-value=29 Score=28.09 Aligned_cols=25 Identities=44% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
..|+.+...|+.+++.|+.++..|.
T Consensus 16 ~~LE~~l~~l~~el~~L~~~l~eLe 40 (118)
T PF08286_consen 16 SDLESELESLQSELEELKEELEELE 40 (118)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 483
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=22.80 E-value=2.1e+02 Score=22.61 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 208 KENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++-++|+.+|...++|-+.||.+|.-
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~~ 44 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILAL 44 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888999999999988874
No 484
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=22.74 E-value=2.4e+02 Score=21.92 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
.++.+...+.-|+-.||+++.+.++|+..
T Consensus 12 ~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 12 TLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777778888887777777653
No 485
>PHA02675 ORF104 fusion protein; Provisional
Probab=22.72 E-value=3.9e+02 Score=21.69 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-..+.+..+.+.+.=..+...|..|+..+++||.-|+.
T Consensus 39 L~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~ 76 (90)
T PHA02675 39 LVSLLDSYKTITDCCRETGARLDRLERHLETLREALLK 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666667777778888888888888877765
No 486
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.70 E-value=27 Score=27.73 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNK 247 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~ 247 (256)
..+..+...|..++..|..+|..++.+...|+..|..+.-.-+.+......
T Consensus 35 ~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~ 85 (131)
T PF05103_consen 35 ERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEE 85 (131)
T ss_dssp HHHHHHHHHHHHHHHCCCCT-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
No 487
>PF15456 Uds1: Up-regulated During Septation
Probab=22.65 E-value=2.1e+02 Score=23.94 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
.++|+.|++|-..|..+|+.+++.+.....+
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~ 51 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLALESKI 51 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=22.63 E-value=1.9e+02 Score=26.37 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
..+......+-.+|..|+.+|..|++++......
T Consensus 33 D~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 33 DDVIDDYEQLLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 489
>KOG4809|consensus
Probab=22.63 E-value=2.3e+02 Score=30.00 Aligned_cols=61 Identities=25% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhh
Q psy16107 186 RKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHF 249 (256)
Q Consensus 186 RKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l 249 (256)
++-.+-+-..+.++.++++..++||..|+.+|.+|+.++..-..-+.. +-++...-....+
T Consensus 316 erLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~d---lkehassLas~gl 376 (654)
T KOG4809|consen 316 ERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLID---LKEHASSLASAGL 376 (654)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
No 490
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.57 E-value=5.8e+02 Score=29.75 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16107 169 KNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGV 236 (256)
Q Consensus 169 k~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~ 236 (256)
.++..--++=+..-.-+.+.+++.+.+..+.+.+..+...+-..|+..+..+++++..++.-|.+.|+
T Consensus 981 ~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~ 1048 (1486)
T PRK04863 981 AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV 1048 (1486)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
No 491
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=22.55 E-value=4.2e+02 Score=22.17 Aligned_cols=43 Identities=28% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 188 SREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 188 SReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|-+.-.++..+++++ ++....+|+..|.+.+..+..++.+|..
T Consensus 98 see~Q~~~i~~L~~E---~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 98 SEEEQLKRIKELEEE---NEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp -HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.55 E-value=4.2e+02 Score=22.43 Aligned_cols=66 Identities=9% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHh
Q psy16107 183 IAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKH 248 (256)
Q Consensus 183 iAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~ 248 (256)
.|.+..|..=.+|.+.+-.++++..+-....+.+|..+...+..++.-+......-..+..-|.++
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=22.47 E-value=5.8e+02 Score=23.05 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 173 EYKRRRERNNIAVRKSREKAKI---RSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~---R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
.||+||-.-++.-|+++..+.. ....+++++...+.-.++-+.-++.+++-+..+
T Consensus 116 qd~Errl~~m~~~r~l~l~q~s~~vEqq~lqqel~~~e~RlarCr~AlekiE~~l~~~ 173 (175)
T COG3923 116 QDYERRLLAMVQDRRLQLAQQSDLVEQQKLQQELEAYEQRLARCRHALEKIENRLARK 173 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 494
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.45 E-value=2.9e+02 Score=21.98 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+.+.....+|+.+-+.|...+..|+..+..++..+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~ 36 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAI 36 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>KOG0483|consensus
Probab=22.43 E-value=1.4e+02 Score=27.02 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
++|=|...++...+.|..+-+.|+.+-..|+.|+..|+..+.
T Consensus 102 RARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 102 RARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred cccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
No 496
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=22.31 E-value=2.4e+02 Score=23.54 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQ-KRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk-~~Ie~L~kEl~~LK~ll~q 233 (256)
+|+.+.+.|+.|..++| .+-+.=+.|++..|+++..
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~e 40 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQLYLE 40 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHH
No 497
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.28 E-value=6.5e+02 Score=23.52 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHh
Q psy16107 172 DEYKRRRERNNIAVRKSR---EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKH 248 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSR---eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~ 248 (256)
+++..++.-=..+.+|-+ ++.+.+...++.+++.|+.+..++..+|..+...++.++..+ .++.-+.-.+.++.-
T Consensus 20 ~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E 97 (239)
T COG1579 20 DRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL--SAVKDERELRALNIE 97 (239)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHH
Q ss_pred hh
Q psy16107 249 FD 250 (256)
Q Consensus 249 l~ 250 (256)
++
T Consensus 98 ~~ 99 (239)
T COG1579 98 IQ 99 (239)
T ss_pred HH
No 498
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=22.24 E-value=2.5e+02 Score=30.80 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 179 ERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 179 eRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.+-....+..-..-+....++..+++.|.+|+.+|+++|+.|++++..++
T Consensus 739 ~~~~~~l~~~a~~L~~~~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~ 788 (900)
T PRK13902 739 QELEDLLKEAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELL 788 (900)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=22.24 E-value=5.5e+02 Score=22.64 Aligned_cols=73 Identities=27% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhc
Q psy16107 178 RERN-NIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDS 251 (256)
Q Consensus 178 ReRN-NiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~ 251 (256)
...| -+|..|--.-++++....+..+..+...-.+....++...+++..++..-.. =|-++.++..|..+||.
T Consensus 82 ~~~N~~~~~~Re~Rl~~e~e~~~~~~l~~~~~~~~~~~~~~~~~e~~V~~~~e~sk~-FIT~ENLd~~IeeALdn 155 (170)
T PF14943_consen 82 EEWNAEIAELREERLAKEREEREEEILERLERKEEEEEERKERKEEEVRQLKEESKN-FITRENLDAAIEEALDN 155 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cCCHHhHHHHHHHHHcC
No 500
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.16 E-value=3.2e+02 Score=24.28 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+....+..+..|+.+-..++..|+.|+..+..|+.-+..
T Consensus 92 ~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~ 131 (219)
T TIGR02977 92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAE 131 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!